|
Name |
Accession |
Description |
Interval |
E-value |
| HMMR_C |
pfam15908 |
Hyaluronan mediated motility receptor C-terminal; HMMR_C is the C-terminal region of ... |
431-584 |
8.89e-53 |
|
Hyaluronan mediated motility receptor C-terminal; HMMR_C is the C-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464934 [Multi-domain] Cd Length: 157 Bit Score: 177.41 E-value: 8.89e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 431 RKQLEEKGKRTAEKENVMTELTMEINKWRLLYEELYEKTKPFQQQLDAFEAEKQALLNEHGATQEQLNKIRDSYAQLLGH 510
Cdd:pfam15908 1 TKQLEMEEQRKARLENTVDELTEEIKKWRNLYEELYNKTKPFQEQLDAFEAEKNALLNENGAAQEELNKLSDAYAKLLGH 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568971767 511 QNLKQKIKHVVKLKDENSQLKSEVSKLRSQLVKRKQNELRLQGELDKALGIRHFDPSKAFCHASKENF---TPLKEG 584
Cdd:pfam15908 81 QNQKQKIKHVVKLKEENTQLKQEVSKLRSQLAKEKQVQKKLQEQLNGAQGIRRFDPSKAFQHESKENFepkTPLKEG 157
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
1-154 |
6.34e-42 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 153.81 E-value: 6.34e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 1 MMVKQEGMELKLQATQKDLTESKGKIVQLEGKLVSIEKEKIDEKCETEKLLEYIQEISCASDQVEKCKVDIAQLEEDLKE 80
Cdd:pfam15905 175 VMAKQEGMEGKLQVTQKNLEHSKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYITELSCVSEQVEKYKLDIAQLEELLKE 254
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568971767 81 KDREILSLKQSLEENIT-FSKQIEDLTVKCQLLETERDNLVSKDRERAETLSAEMQILTERLALERQEYEKLQQK 154
Cdd:pfam15905 255 KNDEIESLKQSLEEKEQeLSKQIKDLNEKCKLLESEKEELLREYEEKEQTLNAELEELKEKLTLEEQEHQKLQQK 329
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
126-407 |
2.21e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 2.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 126 RAETLSAEMQILTERLALERQEYEKLQQKELQSQSLLQQEKELSARLQQQLcsfqEEMTSEKNVFKEELKLALAELDAVQ 205
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL----EELELELEEAQAEEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 206 QKEEQSERLVKQLEEETKSTAEQLTRLDN---LLREKEVELEKHIAAHAQAILIAQEKYNDTAQSLRDVTAQLESVQEky 282
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEeleELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE-- 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 283 ndTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESYKSSTLKEIEDLKLENLTLQEK 362
Cdd:COG1196 380 --ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 568971767 363 VAMAEKSVEDVQQQILTAESTNQEYARMVQDLQNRSTLKEEEIKE 407
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
9-352 |
3.94e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.20 E-value: 3.94e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 9 ELKLQATQKDLTESKGKIVQLEGKLVSIEKEKidekcetEKLLEYIQ--------EISCASDQVEKCKVDIAQLEEDLKE 80
Cdd:COG1196 178 ERKLEATEENLERLEDILGELERQLEPLERQA-------EKAERYRElkeelkelEAELLLLKLRELEAELEELEAELEE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 81 KDREILSLKQSLEENitfSKQIEDLTVKCQLLETERDNLVSKDRERAETLSAEMQILTERLALERQEYEKLQQKELQSQS 160
Cdd:COG1196 251 LEAELEELEAELAEL---EAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 161 LLQQEKELSARL---QQQLCSFQEEMTSEKNVFKEELKLALAELDAVQQKEEQSERLVKQLEEETKSTAEQLTRLDNLLR 237
Cdd:COG1196 328 LEEELEELEEELeelEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 238 EKEvELEKHIAAHAQAILIAQEKYNDTAQSLRDVTAQLESVQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQL 317
Cdd:COG1196 408 AEE-ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
330 340 350
....*....|....*....|....*....|....*
gi 568971767 318 ESEQEKYNDTAQSLRDVTAQLESYKSSTLKEIEDL 352
Cdd:COG1196 487 AEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
38-541 |
1.68e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 67.37 E-value: 1.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 38 KEKIDEKCET---EKLLEYIQEISCASDQVEKCKVDIAQLEEDLKEKDREILSLKQSLEENITFSKQIEDLTVKCQLLET 114
Cdd:PRK02224 193 KAQIEEKEEKdlhERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETER 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 115 ERDNL---VSKDRERAETLSAEMQILTERLALERQEYEklqqkelqsqSLLQQEKELSARlqqqlcsfqeemtseknvfK 191
Cdd:PRK02224 273 EREELaeeVRDLRERLEELEEERDDLLAEAGLDDADAE----------AVEARREELEDR-------------------D 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 192 EELKLALAELD-AVQQKEEQSERL---VKQLEEETKStaeqltrldnlLREKEVELEKHIAAhaqailiAQEKYNDTAQS 267
Cdd:PRK02224 324 EELRDRLEECRvAAQAHNEEAESLredADDLEERAEE-----------LREEAAELESELEE-------AREAVEDRREE 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 268 LRDVTAQLESVQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESEQEKYNDtAQSLRDV----TAQLESYKS 343
Cdd:PRK02224 386 IEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEE-AEALLEAgkcpECGQPVEGS 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 344 STLKEIEDLKLENLTLQEKVAMAEKSVEDVQQQILTAESTnQEYARMVQDLQNRSTLKEEEIkeitssflekitdlknql 423
Cdd:PRK02224 465 PHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDL-VEAEDRIERLEERREDLEELI------------------ 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 424 rqqdEDFRKQLEEKGKRTAEKENVMTELTMEINKWRLLYEELYEKTKPFQQQLDAFEAEKQALLNEhgatQEQLNKIRDS 503
Cdd:PRK02224 526 ----AERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKER----IESLERIRTL 597
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 568971767 504 YAQLLGH----QNLKQKIKHVVKLKDENSQLKSEVSKLRSQL 541
Cdd:PRK02224 598 LAAIADAedeiERLREKREALAELNDERRERLAEKRERKREL 639
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
191-491 |
2.69e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 2.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 191 KEELKLALAELDAVQQKEEQSerlvkQLEEETKSTAEQLTRLDNLLREKEVELEKHIAAHA---QAILIAQEKYNDTAQS 267
Cdd:TIGR02168 222 LRELELALLVLRLEELREELE-----ELQEELKEAEEELEELTAELQELEEKLEELRLEVSeleEEIEELQKELYALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 268 LRDVTAQLESVQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESYKSStlk 347
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR--- 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 348 eIEDLKLENLTLQEKVAMAEKSVEDVQQQILTAESTNQEYARMVQDLQNRSTLKEEEIKEI----TSSFLEKITDLKNQL 423
Cdd:TIGR02168 374 -LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAelkeLQAELEELEEELEEL 452
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568971767 424 RQQDEDFRKQLEEKGKRTAEKENVMTELTMEINKwrlLYEELYEKTKPFQQQLDAFEAEKQALLNEHG 491
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAERELAQ---LQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
193-465 |
6.46e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 6.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 193 ELKLALAELDAVQQKEEQSERLVKQLEEEtkstAEQLTRLDNLLREKEVELEKHIAAHAQAILIAQEKYNDTAQSLRDVT 272
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAE----LEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 273 AQLESVQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESYKSSTLKEIEDL 352
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 353 KLENLTLQEKVAMAEKSVEDVQQQILTAESTNQEYARMVQDLQNRST--LKEEEIKEITSSFLEKITDLKNQLRQQDEDF 430
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEalAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270
....*....|....*....|....*....|....*
gi 568971767 431 RKQLEEKGKRTAEKENVMTELTMEINKWRLLYEEL 465
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLLL 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
9-321 |
1.01e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 1.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 9 ELKLQATQKDLTESKGKIVQLEGKLVSIE---------KEKIDEKCETEKLLeYIQEISCASDQVEKCKVDIAQLEEDLK 79
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILNELERQLKSLErqaekaeryKELKAELRELELAL-LVLRLEELREELEELQEELKEAEEELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 80 EKDREILSLKQSLEENITFSKQIEDltvKCQLLETERDNLVSKdrerAETLSAEMQILTERLALERQEYEKLQQKELQSQ 159
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEE---EIEELQKELYALANE----ISRLEQQKQILRERLANLERQLEELEAQLEELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 160 SLLQQEKELSARLQQQLCSFQEEMTSEKNVFKEELKLALAELDAVQQKEEQSERL---VKQLEEETKSTAEQLTRLDNLL 236
Cdd:TIGR02168 330 SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLrskVAQLELQIASLNNEIERLEARL 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 237 REKEVELEKHIAAHAQAILIAQE-KYNDTAQSLRDVTAQLESVQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTA 315
Cdd:TIGR02168 410 ERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
|
....*.
gi 568971767 316 QLESEQ 321
Cdd:TIGR02168 490 RLDSLE 495
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
9-496 |
1.60e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 1.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 9 ELKLQATQKDLTESKGKIVQLEGKLVSIEKE----KIDEKCETEKLLEYIQEISCASDQVEKCKVDIAQLEEDLKEKDRE 84
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELEleeaQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 85 ILSLKQSLEEnitfskQIEDLTVKCQLLETERDNLVSKDRERAETLSAEMQILTERLALERQEYEKLQQKELQSQSLLQQ 164
Cdd:COG1196 332 LEELEEELEE------LEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 165 EKELSARLQQqlcsfQEEMTSEKNVFKEELKLALAELDAVQQKEEQSERLVKQLEEEtkstAEQLTRLDNLLREKEVELE 244
Cdd:COG1196 406 EEAEEALLER-----LERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE----EEALLELLAELLEEAALLE 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 245 KHIAAHAQAILIAQEKYNDTAQSLRDVTAQLESVQEKYNDTAQSLRDVTAQLESEQEKYNDTAqslrDVTAQLESEQEKY 324
Cdd:COG1196 477 AALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAA----LEAALAAALQNIV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 325 NDTAQSLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKSVEDV--------------QQQILTAESTNQEYARM 390
Cdd:COG1196 553 VEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVdlvasdlreadaryYVLGDTLLGRTLVAARL 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 391 VQDLQNRSTLKEEEI------------KEITSSFLEKITDLKNQLRQQDEDFRKQLEEKGKRTAEKENVMTELTMEINKW 458
Cdd:COG1196 633 EAALRRAVTLAGRLRevtlegeggsagGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEA 712
|
490 500 510
....*....|....*....|....*....|....*...
gi 568971767 459 RLLYEELYEKTKPFQQQLDAFEAEKQALLNEHGATQEQ 496
Cdd:COG1196 713 EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEE 750
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
208-431 |
3.87e-09 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 59.65 E-value: 3.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 208 EEQSERLVKQLEEETKSTAEQLTRLDNLLREKEVELEKHIAAHAqaILIAQEKYNDTAQSLRDVTAQLESVQEKYNDTAQ 287
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNG--LVDLSEEAKLLLQQLSELESQLAEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 288 SLRDVTAQLESEQEKYNDTAQS---------LRDVTAQLESEQEKYNDTAQSLRDVTAQLESYKSSTLKEIE----DLKL 354
Cdd:COG3206 241 RLAALRAQLGSGPDALPELLQSpviqqlraqLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQrilaSLEA 320
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568971767 355 ENLTLQEKVAMAEKSVEDVQQQILTAESTNQEYARMVQDLQNrstlkeeeIKEITSSFLEKITDLKNQLRQQDEDFR 431
Cdd:COG3206 321 ELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEV--------ARELYESLLQRLEEARLAEALTVGNVR 389
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
4-486 |
8.00e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.54 E-value: 8.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 4 KQEGMELKLQATQKDLTESKGKIVQLEGKLVSIEKEKIDEKCETEKLLEYIQEISCASDQVEKCKVDIAQLEEDLKEKDR 83
Cdd:PRK03918 187 RTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 84 EILSLK---QSLEENITFSKQIEDLTVKCQLLETERDNLVSKDRERAETLSaemqILTERLALERQEYEKLQQKELQSQS 160
Cdd:PRK03918 267 RIEELKkeiEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLS----RLEEEINGIEERIKELEEKEERLEE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 161 LLQQEKELS---ARLQQQLCSFQEEMTSEKNVFKEELKLALAELDAVQQKEEQSERLVKQLEEETKSTAEQLTRLDNLLR 237
Cdd:PRK03918 343 LKKKLKELEkrlEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIK 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 238 EKEVELEKHIAAHAQAILIAQE-KYNDTAQSLRDVTAQLESVQEKYNDTAQSLRDVTAQL---------ESEQEKYNDTA 307
Cdd:PRK03918 423 ELKKAIEELKKAKGKCPVCGRElTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELrelekvlkkESELIKLKELA 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 308 QSLRDVTAQLES--------EQEKYNDTAQSLRDVTAQLESYKSStLKEIEDLKLENLTLQEKVAMAEK----------- 368
Cdd:PRK03918 503 EQLKELEEKLKKynleelekKAEEYEKLKEKLIKLKGEIKSLKKE-LEKLEELKKKLAELEKKLDELEEelaellkelee 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 369 ----SVEDVQQQILTAESTNQEYARMVqDLQNRSTLKEEEIKeITSSFLEKITDLKNQLRQQDEDFRKQLEEKGKRTAEK 444
Cdd:PRK03918 582 lgfeSVEELEERLKELEPFYNEYLELK-DAEKELEREEKELK-KLEEELDKAFEELAETEKRLEELRKELEELEKKYSEE 659
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 568971767 445 E-----NVMTELTMEINKWRLLYEELYEKTKPFQQQLDAFEAEKQAL 486
Cdd:PRK03918 660 EyeelrEEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER 706
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
120-445 |
2.34e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 2.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 120 VSKDRERAETLSAEMQILTERLALERQEYEKLQ--QKELQ--SQSLLQQEKELSARLQQQLCSFQEEMTSEKNVFKEELk 195
Cdd:TIGR02169 182 VEENIERLDLIIDEKRQQLERLRREREKAERYQalLKEKReyEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEI- 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 196 lalaeldavQQKEEQSERLVKQLEEETKSTAEQLTRLDNLLREKEVELEKHIAAHAQAILIAQEKYNDTAQSLRDVTAQL 275
Cdd:TIGR02169 261 ---------SELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 276 ESVQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESYKSstlkEIEDLKLE 355
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR----EINELKRE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 356 NLTLQEKVAMAEKSVEDVQQQILTAESTNQEYARMVQDLQNRSTLKEEEIKEItSSFLEKITDLKNQLRQQDEDFRKQLE 435
Cdd:TIGR02169 408 LDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL-AADLSKYEQELYDLKEEYDRVEKELS 486
|
330
....*....|
gi 568971767 436 EKGKRTAEKE 445
Cdd:TIGR02169 487 KLQRELAEAE 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
155-459 |
2.64e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 2.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 155 ELQSQSLLQQEKELsARLQQQLCSFQEEMTS---EKNVFKEELKLALAELDAVQQKEEQSERLVKQLEEETK---STAEQ 228
Cdd:TIGR02168 666 AKTNSSILERRREI-EELEEKIEELEEKIAElekALAELRKELEELEEELEQLRKELEELSRQISALRKDLArleAEVEQ 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 229 LTRLDNLLREKEVELEKHIAAHAQAILIAQEKYNDTAQSLRDVTAQLESVQEKYNDTAQSLRDVTAQLESEQEKYNDTAQ 308
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 309 SLRDVTAQLESEQEKYNDTAQSLRDVTAQLESYKsstlKEIEDLKLENLTLQEKVAMAEKSVEDVQQQILTAESTNQEYA 388
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLA----AEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568971767 389 RMVQDLQNRSTLKEEEIKEITSSfLEKITDLKNQLRQQDEDFRKQLEEKGKRTAEK-ENVMTELTMEINKWR 459
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREK-LAQLELRLEGLEVRIDNLQERLSEEYSLTLEEaEALENKIEDDEEEAR 971
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
71-450 |
3.37e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.31 E-value: 3.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 71 IAQLEEDLKEKDREILSLKQSLEENITFSKQIEDLTVKCQLLETERDNLvsKDRERAETLSAEMQILTERLALERQEYEK 150
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKL--EKLLQLLPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 151 LQQKELQSQSLLQQEKELSARLQQQLCSFQEEMTSEKNVFKEELKLALAELDAVQQKEEQSERLVKQLEEETKSTAEQLT 230
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 231 RLDNLLREKEVELEKH-----------IAAHAQAILIAQEKYNDTAQSLRDVTAQLESVQEKYNDTAQSLRDVTAQLESE 299
Cdd:COG4717 231 QLENELEAAALEERLKearlllliaaaLLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQAL 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 300 QEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKSVEDVQQ---- 375
Cdd:COG4717 311 PALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEElraa 390
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568971767 376 --QILTAESTNQEYARMVQDLQNRSTLKEEEIKEITSSFL-EKITDLKNQLRQQDEDFRKQLEEKGKRTAEKENVMTE 450
Cdd:COG4717 391 leQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELeEELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
11-352 |
1.08e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 1.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 11 KLQATQKDLTESKGKIVQLEGKLVSIEK---EKIDEKCETEKLLEYIQ-EISCASDQVEKCKVDIAQLEEDLKEKDREIL 86
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENrldELSQELSDASRKIGEIEkEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 87 SLKQSLEENItfsKQIEDLTVKCQLLETERDNLVSK-DRERAETLSAEMQILTErlalERQEYEKLQQKELQSQSLLQQE 165
Cdd:TIGR02169 755 NVKSELKELE---ARIEELEEDLHKLEEALNDLEARlSHSRIPEIQAELSKLEE----EVSRIEARLREIEQKLNRLTLE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 166 KELSARLQQQLCSFQEEMTSEKNVFKEELKLALAELDAVQQKEEQSERLVKQLEEETKSTAEQLTRLDNLLREKEVELEK 245
Cdd:TIGR02169 828 KEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 246 hIAAHAQAILIAQEKYNDTAQSLRDVTAQLESVQ---EKYNDTAQSLRDVTAQLESEQEKYndtaQSLRDVTAQLESEQE 322
Cdd:TIGR02169 908 -LEAQIEKKRKRLSELKAKLEALEEELSEIEDPKgedEEIPEEELSLEDVQAELQRVEEEI----RALEPVNMLAIQEYE 982
|
330 340 350
....*....|....*....|....*....|
gi 568971767 323 KYNDTAQSLRDVTAQLESYKSSTLKEIEDL 352
Cdd:TIGR02169 983 EVLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
252-555 |
1.70e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 1.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 252 QAILIAQEKYNDTAQSLRDVTAQLESVQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLrdvtAQLESEQEKYNDTAQSL 331
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL----ARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 332 RDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKSVEDVQQQILTAESTNQEYARMVQDLQNRSTLKEEEIKeitss 411
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE----- 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 412 flekitdlknQLRQQDEDFRKQLEEKGKRTAEKENVMTELTMEINKWRLLYEELYEKTKPFQQQLDAFEAEKQALLNEHG 491
Cdd:TIGR02168 828 ----------SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568971767 492 ATQEQLNKIRdsyaqllghqnlkqkiKHVVKLKDENSQLKSEVSKLRSQLVKRKQNELRLQGEL 555
Cdd:TIGR02168 898 ELSEELRELE----------------SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
100-433 |
1.92e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 1.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 100 KQIEDLTVKCQLLETERDNLvskdRERAETLSAEMQILTERlaleRQEYEKLQQKELQSQSLLQQEKELsARLQQQLcsf 179
Cdd:COG4913 610 AKLAALEAELAELEEELAEA----EERLEALEAELDALQER----REALQRLAEYSWDEIDVASAEREI-AELEAEL--- 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 180 qEEMTSEKNVF---KEELKLALAELDAVQQKEEQSERLVKQLEEETKSTAEQLTRLDNLLREKEVELEKHIAAHAQAILI 256
Cdd:COG4913 678 -ERLDASSDDLaalEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFA 756
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 257 AQEKYNDTAQSLRDVTAQLESVQEKYNDTAQSLRDVTAQLeseQEKYNDTAQSLRDVTAQLESEQEKYND-TAQSLRDVT 335
Cdd:COG4913 757 AALGDAVERELRENLEERIDALRARLNRAEEELERAMRAF---NREWPAETADLDADLESLPEYLALLDRlEEDGLPEYE 833
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 336 AQLESYKSSTlkEIEDLKLENLTLQEKVAMAEKSVEDVQQ-------------QILTAESTNQEYA---RMVQDLQNRST 399
Cdd:COG4913 834 ERFKELLNEN--SIEFVADLLSKLRRAIREIKERIDPLNDslkripfgpgrylRLEARPRPDPEVRefrQELRAVTSGAS 911
|
330 340 350
....*....|....*....|....*....|....
gi 568971767 400 LKEEEIKEitsSFLEKITDLKNQLRQQDEDFRKQ 433
Cdd:COG4913 912 LFDEELSE---ARFAALKRLIERLRSEEEESDRR 942
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
138-380 |
2.36e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 2.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 138 TERLALERQEYEKLQQKELQSQSLLQQEKELSARLQQQLCSFQEEmtseknvfkeeLKLALAELDAVQQKEEQSERLVKQ 217
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERR-----------IAALARRIRALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 218 LEEETKSTAEQLTRLDNLLREKEVELEKHIAAHAQAILIAQEKYNDTAQSLRDVTAQLESVQEKyndtAQSLRDVTAQLE 297
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQ----AEELRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 298 SEQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKSVEDVQQQI 377
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
...
gi 568971767 378 LTA 380
Cdd:COG4942 244 PAA 246
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
15-481 |
3.24e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.51 E-value: 3.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 15 TQKDLTESKGKIVQLEGKLVSIEKEKIDEKCE----TEKLLEYIQEISCASDQVEKCKVDIAQLEEDLKEKDREILSLKQ 90
Cdd:PRK02224 249 RREELETLEAEIEDLRETIAETEREREELAEEvrdlRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRD 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 91 SLEENIT----FSKQIEDLTVKCQLLETERDNLvskdRERAETLSAEMQILTERLALERQEYEKLQqKELQSqslLQQEK 166
Cdd:PRK02224 329 RLEECRVaaqaHNEEAESLREDADDLEERAEEL----REEAAELESELEEAREAVEDRREEIEELE-EEIEE---LRERF 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 167 ELSARLQQQLCSFQEEMTSEKNVFKEELKLALAELDAVQQKEEQSERLvkqLEEETKSTAEQLTRLD---NLLREKEVEL 243
Cdd:PRK02224 401 GDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAL---LEAGKCPECGQPVEGSphvETIEEDRERV 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 244 EKHIAAHAQAIL--IAQEKYNDTAQSLRDVTAQLESVQEKYNDTAQSLRDVTAQLESEQEKyndtAQSLRDVTAQLESEQ 321
Cdd:PRK02224 478 EELEAELEDLEEevEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRER----AEELRERAAELEAEA 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 322 EKYNDTAQSLRDVTAQlesyKSSTLKEIEDLKLENLTLQEKVAMAEKSVEDVQQQILTAESTNQEYARMV-QDLQNRSTL 400
Cdd:PRK02224 554 EEKREAAAEAEEEAEE----AREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAeLNDERRERL 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 401 KE--EEIKEITSSFLEKITDLKNQLRQQDEDFRKQLEEKGKR-TAEKENVMTELTMEINKWRLLyEELYEKTKPFQQQLD 477
Cdd:PRK02224 630 AEkrERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDElREERDDLQAEIGAVENELEEL-EELRERREALENRVE 708
|
....
gi 568971767 478 AFEA 481
Cdd:PRK02224 709 ALEA 712
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
6-557 |
1.18e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 51.76 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 6 EGMELKLQATQKDLTESKGKIVQLEGKLVSIEKEK-----IDEKCETEKLLEYIQEISCASDQVEKCKVDIAQLEEDLKE 80
Cdd:pfam12128 254 ESAELRLSHLHFGYKSDETLIASRQEERQETSAELnqllrTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGA 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 81 KDRE-ILSLKQSLEENITFSKQIEDLTVKCQLLETERDNLVSK-DRERA---ETLSAEMQILTERLALERQEYEKlqQKE 155
Cdd:pfam12128 334 FLDAdIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKyNRRRSkikEQNNRDIAGIKDKLAKIREARDR--QLA 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 156 LQSQSLLQQEKELSARLQQQLCSFQEEmtseknvfKEELKLALAEL-----------DAVQQKEEQSERLVKQLEEETKS 224
Cdd:pfam12128 412 VAEDDLQALESELREQLEAGKLEFNEE--------EYRLKSRLGELklrlnqatatpELLLQLENFDERIERAREEQEAA 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 225 TAEQLtRLDNLLREKEVELEKHIAAHAQAILIAQEKYNDTAQSLRDVTAQLESVQE--------------KYNDTAQSLR 290
Cdd:pfam12128 484 NAEVE-RLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHflrkeapdweqsigKVISPELLHR 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 291 -DVTAQLESEQEKYNDTAQSLR------------DVTAQLESEQEKYNDTAQSLRDVTAQLESYKSSTLKEIEDLKLEnl 357
Cdd:pfam12128 563 tDLDPEVWDGSVGGELNLYGVKldlkridvpewaASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASRE-- 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 358 tlQEKVAMAEKSVEDVQQqiltaestnqeyaRMVQDLQNRSTLKEEEIKEITSSFLEKITDLKNQLRQQDEDFRKQLEEk 437
Cdd:pfam12128 641 --ETFARTALKNARLDLR-------------RLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEE- 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 438 gkrtaEKENVMTELTMEINKWRLLYEELyektkpfQQQLDAFEAEKQALLNEHGATQEQLNKIRDSYAQLLG-------- 509
Cdd:pfam12128 705 -----QKEQKREARTEKQAYWQVVEGAL-------DAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGvdpdviak 772
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 510 ----HQNLKQKIKHVVKLKDE--------NSQLKSEVSKLRSQLVKRKQNELRLQGELDK 557
Cdd:pfam12128 773 lkreIRTLERKIERIAVRRQEvlryfdwyQETWLQRRPRLATQLSNIERAISELQQQLAR 832
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
11-228 |
3.43e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 3.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 11 KLQATQKDLTESKGKIVQLEGKLVSIEKEKIDEKCETEKLLeyiQEISCASDQVEKCKVDIAQLEEDLKEKDREILSLKQ 90
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE---RRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 91 SLEENitfSKQIEDLTVKCQ----------LLETERDNLVSKDRERAETLSAEMQILTERLALERQEYEKLQQKELQSQS 160
Cdd:COG4942 98 ELEAQ---KEELAELLRALYrlgrqpplalLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568971767 161 LLQQEKELSARLQQQLCSFQEEMTSEKNVFKEELKLALAELDAVQQKEEQSERLVKQLEEETKSTAEQ 228
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
4-377 |
3.48e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 3.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 4 KQEGMELKLQATQKDLTESKGKIVQLEGKLVSIEKEKIDEKceteklleyiQEISCASDQVEKCKVDIAQLEEDLKEKDR 83
Cdd:TIGR02168 685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS----------RQISALRKDLARLEAEVEQLEERIAQLSK 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 84 EILSLKQSLEENitfSKQIEDLTVKCQLLETERDNLvskdRERAETLSAEMQILTERLALERQEYEKLQQKELQSQSLLQ 163
Cdd:TIGR02168 755 ELTELEAEIEEL---EERLEEAEEELAEAEAEIEEL----EAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 164 QEKELSARLQQQLcsfqEEMTSEKNVFKEELKLALAELDAVQQKEEQSERLVKQLEEETKSTAEQLtrldNLLREKEVEL 243
Cdd:TIGR02168 828 SLERRIAATERRL----EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL----ALLRSELEEL 899
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 244 EKHIAAHAQAILIAQEKYNDTAQSLRDVTAQLESVQEKYNDTAQSLRdvtaqleseqEKYNDTAQSLRDVTAQLESEQEK 323
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS----------EEYSLTLEEAEALENKIEDDEEE 969
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 568971767 324 YNDTAQSLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKSVEDVQQQI 377
Cdd:TIGR02168 970 ARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAI 1023
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
302-560 |
3.54e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 3.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 302 KYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESYKSstlkEIEDLKLENLTLQEKVAMAEKSVEDVQQQILTAE 381
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRL----ELEELELELEEAQAEEYELLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 382 STNQEYARMVQDLQNRSTLKEEEIKEITSSfLEKITDLKNQLRQQDEDFRKQLEEKGKRTAEKENVMTELTMEINKWRLL 461
Cdd:COG1196 309 ERRRELEERLEELEEELAELEEELEELEEE-LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 462 YEELYEKTKPFQQQLDAFEAEKQALLNEHGATQEQLNKIRDSYAQLLghQNLKQKIKHVVKLKDENSQLKSEVSKLRSQL 541
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE--EEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250
....*....|....*....
gi 568971767 542 VKRKQNELRLQGELDKALG 560
Cdd:COG1196 466 AELLEEAALLEAALAELLE 484
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
81-466 |
7.10e-06 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 49.31 E-value: 7.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 81 KDREILSLKQSLEENITFSKQIEDLTVKCQLLETERDNLVSKDRERAETLSAEmqilterlaLERQEYEKLQQKELQSQS 160
Cdd:COG5022 798 KLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQK---------FGRSLKAKKRFSLLKKET 868
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 161 LLQQEKELSARLQQQLCSFQEEMTSEKNVFKEELKLalaeldavqqkEEQSERLVKQLE----EETKSTAEQLTRLDNLL 236
Cdd:COG5022 869 IYLQSAQRVELAERQLQELKIDVKSISSLKLVNLEL-----------ESEIIELKKSLSsdliENLEFKTELIARLKKLL 937
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 237 REKEVELEKHIAAHAQAILiaqekyndtaQSLRDVTAQLESVQEKYNDTAQSLRDVTAQL---ESEQEKYNDTAQSLRDV 313
Cdd:COG5022 938 NNIDLEEGPSIEYVKLPEL----------NKLHEVESKLKETSEEYEDLLKKSTILVREGnkaNSELKNFKKELAELSKQ 1007
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 314 TAQLESEQEKYNDTA---QSLRDVTAQL--ESYKSSTLKEIEDLKlENLTLQEKVAMAEKSVEDVQQQILTAESTNQEYA 388
Cdd:COG5022 1008 YGALQESTKQLKELPvevAELQSASKIIssESTELSILKPLQKLK-GLLLLENNQLQARYKALKLRRENSLLDDKQLYQL 1086
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 389 RMVQDLQNRSTLKEEEIKEITSSFLEKITD------LKNQLRQQDEDFRKQLEEKGKRTAEKENVmTELTMEINKWRLLY 462
Cdd:COG5022 1087 ESTENLLKTINVKDLEVTNRNLVKPANVLQfivaqmIKLNLLQEISKFLSQLVNTLEPVFQKLSV-LQLELDGLFWEANL 1165
|
....
gi 568971767 463 EELY 466
Cdd:COG5022 1166 EALP 1169
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
122-386 |
1.60e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 122 KDRERAETLSAEMQILTERLALERQEYEKLQQKELQSQSLLQQEKELSARLQQQLcsfqEEMTSEKNVFKEELKLALAEL 201
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI----EQLEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 202 DAVQQKEEQSERLVKQLEEETkstaEQLTRLDNLLREKEVELEKHIAAHAQAILIAQ-EKYNDTAQSLRDVTAQLESVQE 280
Cdd:TIGR02169 747 SSLEQEIENVKSELKELEARI----EELEEDLHKLEEALNDLEARLSHSRIPEIQAElSKLEEEVSRIEARLREIEQKLN 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 281 KYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESYKSSTLKEIEDLKLENLTLQ 360
Cdd:TIGR02169 823 RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE 902
|
250 260
....*....|....*....|....*.
gi 568971767 361 EKVAMAEKSVEDVQQQILTAESTNQE 386
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEA 928
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
48-279 |
1.62e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 48 EKLLEYIQEISCASDQVEKCKVDIAQLEEdLKEKDREILSLKQSLEEnitfskqiedltvkcqlLETERDNLvskdreRA 127
Cdd:COG4913 228 DALVEHFDDLERAHEALEDAREQIELLEP-IRELAERYAAARERLAE-----------------LEYLRAAL------RL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 128 ETLSAEMQILTERLALERQEYEKLQQKELQSQSLLQQEKELSARLQQQLcsfQEEMTSEKNVFKEELKLALAELDAVQQK 207
Cdd:COG4913 284 WFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQI---RGNGGDRLEQLEREIERLERELEERERR 360
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568971767 208 EEQSERLVKQLEEETKSTAEQLTRLDNLLREKEVELEKHIAAHAQAILIAQEKYNDTAQSLRDVTAQLESVQ 279
Cdd:COG4913 361 RARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
190-558 |
2.09e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 2.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 190 FKEELKLALAELDAVQQKEEQSERLVKqleeetkstaEQLTRLDNLLREKEvelekhiaahaqailiAQEKYNDTAQSLR 269
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIID----------EKRQQLERLRRERE----------------KAERYQALLKEKR 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 270 DVTAQLESvqEKYNDTAQSLRDVTAQLESEQEkyndtaqSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESYKSStlkei 349
Cdd:TIGR02169 222 EYEGYELL--KEKEALERQKEAIERQLASLEE-------ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE----- 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 350 edlklENLTLQEKVamaeksvEDVQQQILTAESTNQEYARMVQDLQNRSTLKEEEIkeitssflekitdlkNQLRQQDED 429
Cdd:TIGR02169 288 -----EQLRVKEKI-------GELEAEIASLERSIAEKERELEDAEERLAKLEAEI---------------DKLLAEIEE 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 430 FRKQLEEKGKRTAEKENVMTELTMEINKWRLLYEELYEKTKPFQQQLDAFEAEKQALLNEHGATQEQLNKIRDSYAQLLG 509
Cdd:TIGR02169 341 LEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSE 420
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 568971767 510 HQ-NLKQKIKhvvKLKDENSQLKSEVSKLRSQLVKRKQNELRLQGELDKA 558
Cdd:TIGR02169 421 ELaDLNAAIA---GIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
197-407 |
2.45e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 2.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 197 ALAELDAVQQKEEQSERLVKQLEEETKSTAEQLTRLDNLLREKEvELEKHIAAHAQAILIAQEKYNDTAQSLRDVTAQLE 276
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-ALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 277 SVQEKYNDTAQSLRDVTAQLES-----------EQEKYNDT---AQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESYK 342
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRlgrqpplalllSPEDFLDAvrrLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568971767 343 SSTLKEIEDLKLENLTLQEKVAMAEKSVEDVQQQILTAESTNQEYARMVQDLQNRSTLKEEEIKE 407
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
180-382 |
2.66e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 2.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 180 QEEMTSEKNVFKEELKLALAELDAVQQKEEQSERLVKQLEEETKSTAEQLTRLDNLLREKEVELEKHIAAHAQAILIAQE 259
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 260 KYNDT--------AQSLRDVTAQLESVQ---EKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESEQEKYNDTA 328
Cdd:COG3883 98 SGGSVsyldvllgSESFSDFLDRLSALSkiaDADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQ 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568971767 329 QSLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKSVEDVQQQILTAES 382
Cdd:COG3883 178 AEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAA 231
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
172-435 |
3.63e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.83 E-value: 3.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 172 LQQQLCSF--QEEMTSEKNVFKEELKLALAELDAVQQKEEQSERLVKQLEEETKSTAEQLTRLDNLLREKEVELEKHIAA 249
Cdd:PRK11281 41 VQAQLDALnkQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLST 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 250 HAQAILiaQEKYNDTAQSLRDVTAQL--------------ESVQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDvta 315
Cdd:PRK11281 121 LSLRQL--ESRLAQTLDQLQNAQNDLaeynsqlvslqtqpERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRV--- 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 316 QLESE------QEKYN-----------DTAQSLRDVT----AQLEsyksstlKEIEDlkLENLTLQEKVAMAEKSVEDVQ 374
Cdd:PRK11281 196 LLQAEqallnaQNDLQrkslegntqlqDLLQKQRDYLtariQRLE-------HQLQL--LQEAINSKRLTLSEKTVQEAQ 266
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568971767 375 QQILTAESTNqeyarmvqdlqNRSTLKEEEIKEITSSFLEKITDLKNQLRQQDEDFRKQLE 435
Cdd:PRK11281 267 SQDEAARIQA-----------NPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLD 316
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
4-482 |
9.11e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.90 E-value: 9.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 4 KQEGMELKLQATQKDLTESKGKIVQlEGKLVSIEKEKIDEKCETEKLLEYIQEISCASDQVEKCKVDIAQLEEDLK-EKD 82
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEAKKKAE-EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKaEEA 1521
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 83 REILSLKQSLEENItfSKQIEDLTVKCQLLETERDNLVSKDRERAETLSAEMQILTERLALERQEYEKLQQKELQSQSLL 162
Cdd:PTZ00121 1522 KKADEAKKAEEAKK--ADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 163 QQEKELSARLQQQLCSFQEEMTSEKNVFKEELKLALAELDAVQQKEEQSERLVKQLEEETKSTAEQLTRLDNLLREKEVE 242
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE 1679
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 243 LEKhiaahaqailiAQEKYNDTAQSLRDVTAQLESVQEKYNDTAQSLRDvTAQLESEQEKYNDTAQslrdvtaQLESEQE 322
Cdd:PTZ00121 1680 AKK-----------AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKK-AEELKKAEEENKIKAE-------EAKKEAE 1740
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 323 KYNDTAQSLRdvTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKSVEDVQQQILTAESTNQEY---ARMVQDLQNRST 399
Cdd:PTZ00121 1741 EDKKKAEEAK--KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIfdnFANIIEGGKEGN 1818
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 400 LKEEEIKEITSSFLEKITDLKNQLRQQDEDFRKQLEEKGKRTAEKENVMTELTMEINKWRLLYEELYEKTKPFQQQLDAF 479
Cdd:PTZ00121 1819 LVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDI 1898
|
...
gi 568971767 480 EAE 482
Cdd:PTZ00121 1899 ERE 1901
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
4-425 |
1.26e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 4 KQEGMELKLQATQKDLTESKGKIVQLEGKLVSIEKEKIDEKcetEKLLEYIQEISCASDQVEKCKVDIAQLEEDLKEKDR 83
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE---EELEELAEELLEALRAAAELAAQLEELEEAEEALLE 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 84 EILSLKQSLEENITFSKQIEDLTVKCQLLETERDNLVSKDRERAETLSAEMQILTERLALERQEYEKLQQKELQSQSLLQ 163
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 164 QEKELSARLQQQLCSFQEEMTSEKN-------------VFKEELKLALAELDAVQQKEEQSERLVKQLEEETKS------ 224
Cdd:COG1196 495 LLLEAEADYEGFLEGVKAALLLAGLrglagavavligvEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAakagra 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 225 TAEQLTRLDNLLREKEVELEKHIAAHAQAILIAQEKYNDTAQSLRD-------VTAQLESVQEKYNDTAQSLRDVTAQLE 297
Cdd:COG1196 575 TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDtllgrtlVAARLEAALRRAVTLAGRLREVTLEGE 654
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 298 SEQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESYK---SSTLKEIEDLKLENLTLQEKVAMAEKSVEDVQ 374
Cdd:COG1196 655 GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALlaeEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 568971767 375 QQILTAESTNQEYARMVQDLQNRSTLKEEEIKeitssflEKITDLKNQLRQ 425
Cdd:COG1196 735 EELLEELLEEEELLEEEALEELPEPPDLEELE-------RELERLEREIEA 778
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
124-337 |
1.46e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 124 RERAETLSAEMQILTERLALERQEYEKLQQK--ELQSQSLLQQEKELSARLQQQLcsfqEEMTSEKNVFKEELKLALAEL 201
Cdd:COG3206 167 ELRREEARKALEFLEEQLPELRKELEEAEAAleEFRQKNGLVDLSEEAKLLLQQL----SELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 202 DAVQQKEEQSERLVKQLEEETkSTAEQLTRLDNLLREKEVELEKHIAAHAQAILIAQEKYN---DTAQSLRDVTAQLESV 278
Cdd:COG3206 243 AALRAQLGSGPDALPELLQSP-VIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAAlraQLQQEAQRILASLEAE 321
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 568971767 279 QEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQ 337
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLA 380
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
78-541 |
1.58e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 78 LKEKDREILSLKQSLeenITFSKQIEDLTVKCQlleTERDNLVSKDRERAETLSAEMQI----LTERLALERQEYEKLQ- 152
Cdd:pfam15921 226 LRELDTEISYLKGRI---FPVEDQLEALKSESQ---NKIELLLQQHQDRIEQLISEHEVeitgLTEKASSARSQANSIQs 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 153 -------QKELQSQSLLQQEKELSARLQQQLCSFQE-EMTSEKNVFKEELKLALAELDAVQQKEEQSerlvkQLEEETKS 224
Cdd:pfam15921 300 qleiiqeQARNQNSMYMRQLSDLESTVSQLRSELREaKRMYEDKIEELEKQLVLANSELTEARTERD-----QFSQESGN 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 225 TAEQLTRL--DNLLREKEVELEKHiaahaqailiaQEKY---NDTAQSLrdVTAQLESVQEKYNDTAQSLRDVTAQLESE 299
Cdd:pfam15921 375 LDDQLQKLlaDLHKREKELSLEKE-----------QNKRlwdRDTGNSI--TIDHLRRELDDRNMEVQRLEALLKAMKSE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 300 QEKyndtaqslrDVTAQLESEQEKyNDTAQSLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKSVEDVQQQILT 379
Cdd:pfam15921 442 CQG---------QMERQMAAIQGK-NESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERA 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 380 AESTNQEYARM-------VQDLQN--------RSTLKEEEIKEITSSFLEKITDLknqLRQQDEDFRKQLEEKGKRTAEK 444
Cdd:pfam15921 512 IEATNAEITKLrsrvdlkLQELQHlknegdhlRNVQTECEALKLQMAEKDKVIEI---LRQQIENMTQLVGQHGRTAGAM 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 445 ENVMTELTMEINKWRLLYEELY-------EKTKPFQQQLDAFEAEKQALLNehgATQEQLNKIRDsyaqllghqnlkqki 517
Cdd:pfam15921 589 QVEKAQLEKEINDRRLELQEFKilkdkkdAKIRELEARVSDLELEKVKLVN---AGSERLRAVKD--------------- 650
|
490 500
....*....|....*....|....
gi 568971767 518 khvvkLKDENSQLKSEVSKLRSQL 541
Cdd:pfam15921 651 -----IKQERDQLLNEVKTSRNEL 669
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
257-501 |
2.28e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 257 AQEKYNDTAQSLRDVTAQLESVQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTA 336
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 337 QLESYKSSTLKEIEDLKLENLTLQEKVAMAEKSVEDVQQQILTAESTNQEYARMVQDLQNrstlKEEEIKEITSSFLEKI 416
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRA----DLAELAALRAELEAER 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 417 TDLKNQLRQQDEDfRKQLEekgKRTAEKENVMTELTMEINKWRLLYEELYEKTKPFQQQLDAFEAEKQALLNEHGATQEQ 496
Cdd:COG4942 174 AELEALLAELEEE-RAALE---ALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFA 249
|
....*
gi 568971767 497 LNKIR 501
Cdd:COG4942 250 ALKGK 254
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
125-456 |
3.60e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 3.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 125 ERAETLSAEMQILTERLALERQEYEKLQqkelqsqsllqqekelsaRLQQQLCSFqeemtseknvFKEELKLAL-----A 199
Cdd:PRK04863 786 KRIEQLRAEREELAERYATLSFDVQKLQ------------------RLHQAFSRF----------IGSHLAVAFeadpeA 837
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 200 ELDAVQQKEEQSERLVKQLEEETKSTAEQLTRLdnllREKEVELEKHIAahaQAILIAQEKYNDTAQSLRDVTAQLESVQ 279
Cdd:PRK04863 838 ELRQLNRRRVELERALADHESQEQQQRSQLEQA----KEGLSALNRLLP---RLNLLADETLADRVEEIREQLDEAEEAK 910
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 280 ---EKYNDTAQSLRDVTAQLESEQEKYndtaQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLE--SYKSSTLKEIEDLKL 354
Cdd:PRK04863 911 rfvQQHGNALAQLEPIVSVLQSDPEQF----EQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAhfSYEDAAEMLAKNSDL 986
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 355 eNLTLQEKVAMAEKSVEDVQQQILTAESTNQEYARMVQDLQNRSTLKEEEIKEITSSfLEKIT-----DLKNQLRQQDED 429
Cdd:PRK04863 987 -NEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQE-LQDLGvpadsGAEERARARRDE 1064
|
330 340
....*....|....*....|....*..
gi 568971767 430 FRKQLEEKGKRTAEKENVMTELTMEIN 456
Cdd:PRK04863 1065 LHARLSANRSRRNQLEKQLTFCEAEMD 1091
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
3-546 |
4.39e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 4.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 3 VKQEGMELKLQATQKDLT-ESKGKIVQLEGKLVSIEKEKIDEKCETEKLLEYIQEISCASDQVEKCKVDIAQLEEDLKEK 81
Cdd:TIGR00606 202 VQEHQMELKYLKQYKEKAcEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQM 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 82 DREILSLKQSLEENITFS-KQIEDLTVKCQLLETERDNLVSKDRERAETLSAEMQILTERLA--LERQEYEKLQQKELQS 158
Cdd:TIGR00606 282 EKDNSELELKMEKVFQGTdEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTelLVEQGRLQLQADRHQE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 159 QSLLQQEKELSARLQQQLCSFQEEMTSEKNV----------FKEELKLALAELDAVQQKEEQSERLVKQLEEETKSTAEQ 228
Cdd:TIGR00606 362 HIRARDSLIQSLATRLELDGFERGPFSERQIknfhtlvierQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRT 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 229 LtRLDNLLREKEVELEKHIAAHAQAILIAQEKYNDTAQSLRDVTAQLESVQEKYNDTAQSLRDVTAQLES--------EQ 300
Cdd:TIGR00606 442 I-ELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKadldrklrKL 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 301 EKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESYKSSTLKEIEDLKLENLTLQEK---VAMAEKSVEDVQQQI 377
Cdd:TIGR00606 521 DQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKskeINQTRDRLAKLNKEL 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 378 LTAESTNQEYARMVQDLQNRSTLKEEEIKEITSSFLEKiTDLKNqLRQQDEDFRKQLEEKGKRTAEKENVMTELTMEINK 457
Cdd:TIGR00606 601 ASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEE-SDLER-LKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQS 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 458 WRLLYEELYEKTKPFQQQLDAFEAEKQALLNEHGATQEQLNKIRDSYAQLLGHQNLKQ-----KIKHVVKLKDENSQLKS 532
Cdd:TIGR00606 679 CCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQsiidlKEKEIPELRNKLQKVNR 758
|
570
....*....|....
gi 568971767 533 EVSKLRSQLVKRKQ 546
Cdd:TIGR00606 759 DIQRLKNDIEEQET 772
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
258-468 |
5.12e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 5.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 258 QEKYNDTAQSLRDVTAQLESVQEKYNDTAQSLRDVTAQ--LESEQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVT 335
Cdd:COG3206 167 ELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 336 AQLESYKSSTLKEIEDLKLENLTLQEkvamaeksvEDVQQQILTAESTNQEYARMVQDLQNRSTLKEEEIKEITSSFLEK 415
Cdd:COG3206 247 AQLGSGPDALPELLQSPVIQQLRAQL---------AELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILAS 317
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568971767 416 ITDLKNQLRQQDEDFRKQLEE---KGKRTAEKENVMTELTMEINKWRLLYEELYEK 468
Cdd:COG3206 318 LEAELEALQAREASLQAQLAQleaRLAELPELEAELRRLEREVEVARELYESLLQR 373
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
51-558 |
8.22e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.41 E-value: 8.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 51 LEYIQEISCASDQVEKCKvdIAQLEEDLKEKDREILSLKQSLEENIT-FSKQIEDLTVKCQLLETERDNLVSKD---RER 126
Cdd:pfam15921 301 LEIIQEQARNQNSMYMRQ--LSDLESTVSQLRSELREAKRMYEDKIEeLEKQLVLANSELTEARTERDQFSQESgnlDDQ 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 127 AETLSAEMQILTERLALERQEYEKLQQKEL-QSQSLLQQEKELSARLQ--QQLCSFQEEMTSEKNVFKEElklalaELDA 203
Cdd:pfam15921 379 LQKLLADLHKREKELSLEKEQNKRLWDRDTgNSITIDHLRRELDDRNMevQRLEALLKAMKSECQGQMER------QMAA 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 204 VQQKEEQSERlVKQLEEETKSTAEQLTRLDNLLREKEVELEKH------IAAHAQAILIAQEKYNDTAQSLRD-VTAQLE 276
Cdd:pfam15921 453 IQGKNESLEK-VSSLTAQLESTKEMLRKVVEELTAKKMTLESSertvsdLTASLQEKERAIEATNAEITKLRSrVDLKLQ 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 277 SVQEKYNDtAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESEQE---KYNDTAQSLRDVTAQLESYKSSTLKEIEDLK 353
Cdd:pfam15921 532 ELQHLKNE-GDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQlvgQHGRTAGAMQVEKAQLEKEINDRRLELQEFK 610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 354 LENLTLQEKVAMAEKSVEDVQQQILTAESTNQEYARMVQDlqnrstlkeeeIKEITSSFLEKITDLKNQLRQQDEDFRKQ 433
Cdd:pfam15921 611 ILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKD-----------IKQERDQLLNEVKTSRNELNSLSEDYEVL 679
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 434 LEEKGKRTAEKENVMTELTMEINKWRLLYEELYEKTKPF--------------QQQLDAFEAEKQALLNEHGATQEQLNK 499
Cdd:pfam15921 680 KRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMegsdghamkvamgmQKQITAKRGQIDALQSKIQFLEEAMTN 759
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 500 IRDSYAQLLGHQN-LKQKIKHVVKlkdENSQLKSEVSKLRSQLVKRKQNELRLQGELDKA 558
Cdd:pfam15921 760 ANKEKHFLKEEKNkLSQELSTVAT---EKNKMAGELEVLRSQERRLKEKVANMEVALDKA 816
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
124-321 |
9.19e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 9.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 124 RERAETLSAEMQILTERLALERQEYEKLQQK------ELQSQSLLQQEKELSARLQQqLCSFQEEMTSEKNVFKEELKL- 196
Cdd:COG3206 174 RKALEFLEEQLPELRKELEEAEAALEEFRQKnglvdlSEEAKLLLQQLSELESQLAE-ARAELAEAEARLAALRAQLGSg 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 197 -----ALAELDAVQQKEEQSERLVKQLEEETKSTAEQLTRLDNLLREKEvELEKHIAAHAQAILIAQEKYNDTAQ----S 267
Cdd:COG3206 253 pdalpELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIA-ALRAQLQQEAQRILASLEAELEALQareaS 331
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568971767 268 LRDVTAQLESVQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESEQ 321
Cdd:COG3206 332 LQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTV 385
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
8-546 |
1.71e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.43 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 8 MELKLQATQKDLTESKGKIVQLEGKLVSIEKEKIDEKCETE-------KLLEYIQEISCASDQVEKCKVDIAQLEEDLKE 80
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNnamddynNLKSALNELSSLEDMKNRYESEIKTAESDLSM 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 81 KDREILSLKQSLEEN---------------ITFSKQIEDLTVKCQLLETERDNLVSKDreraetlsAEMQILTErLALER 145
Cdd:PRK01156 268 ELEKNNYYKELEERHmkiindpvyknrnyiNDYFKYKNDIENKKQILSNIDAEINKYH--------AIIKKLSV-LQKDY 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 146 QEYEKLQQKELQSQSLLQQEKELSARLQQQLCSFQEEMTSEKNVFKEELKLALAELDAVQQKEEQSERLVKQLEEETKST 225
Cdd:PRK01156 339 NDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKL 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 226 AEQLTRLDNL------LREKEVELEKHIaahaqAILIAQEKYNDTAQSLRDvtAQLESVQEKYNDTAQSLRDVTAQLESE 299
Cdd:PRK01156 419 QDISSKVSSLnqriraLRENLDELSRNM-----EMLNGQSVCPVCGTTLGE--EKSNHIINHYNEKKSRLEEKIREIEIE 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 300 QEKYNDTAQSLRDVTAQLESEQ-EKYNDTAQSLRDVTAQLESYKS--STLKEIEDlklenltlqeKVAMAEKSVEDVQQQ 376
Cdd:PRK01156 492 VKDIDEKIVDLKKRKEYLESEEiNKSINEYNKIESARADLEDIKIkiNELKDKHD----------KYEEIKNRYKSLKLE 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 377 ILTAESTNQEYARMVQDLQNRSTLKEEeiKEITSSFLEKITDLKNQLRQQDEDFRKQLEEKGKRTAEKENVMTELTMEIN 456
Cdd:PRK01156 562 DLDSKRTSWLNALAVISLIDIETNRSR--SNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQ 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 457 KWRLLYEELYEKTKPFQQQLdafeAEKQALLNEHGATQEQLNKIRDSYAQLLGH-----QNLKQKIKHVVKLKDENSQLK 531
Cdd:PRK01156 640 ENKILIEKLRGKIDNYKKQI----AEIDSIIPDLKEITSRINDIEDNLKKSRKAlddakANRARLESTIEILRTRINELS 715
|
570
....*....|....*
gi 568971767 532 SEVSKLRSQLVKRKQ 546
Cdd:PRK01156 716 DRINDINETLESMKK 730
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
228-436 |
1.92e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 228 QLTRLDNLLREkEVELEKHIAAHAQAILIAQEKYNDTAQSLRDVTAQ---LESVQEKYNDTAQSLRDV--------TAQL 296
Cdd:COG4913 205 PIGDLDDFVRE-YMLEEPDTFEAADALVEHFDDLERAHEALEDAREQielLEPIRELAERYAAARERLaeleylraALRL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 297 ESEQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLES----YKSSTLKEIEDLKLENLTLQEKVAMAEKSVED 372
Cdd:COG4913 284 WFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDEleaqIRGNGGDRLEQLEREIERLERELEERERRRAR 363
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568971767 373 VQQQILTAESTNQEYARMVQDLQNRSTLKEEEIKEITSSFLEKITDLKNQLRQQDEDFRKQLEE 436
Cdd:COG4913 364 LEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAE 427
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
242-457 |
1.95e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 242 ELEKHIAAHAQAILIAQEKYNDTAQSLRDVTAQLESVQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESEQ 321
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 322 EKYNDTAQSLrdvtaqlesYKSSTLKEIEDL-KLENLTLQEKVAMAEKSV-EDVQQQILTAESTNQEYARMVQDLQNRST 399
Cdd:COG4942 104 EELAELLRAL---------YRLGRQPPLALLlSPEDFLDAVRRLQYLKYLaPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568971767 400 LKEEEIKEITSSfLEKITDLKNQLRQQDEDFRKQLEEKGKRTAEKENVMTELTMEINK 457
Cdd:COG4942 175 ELEALLAELEEE-RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
327-558 |
2.28e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 327 TAQSLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKSVEDVQQQILTAEstnqeyaRMVQDLQNRSTLKEEEIK 406
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA-------RRIRALEQELAALEAELA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 407 EITssflEKITDLKNQLRQQDEDFRKQLeekgkRTAEKENVMTELTMEINK------------WRLLYEELYEKTKPFQQ 474
Cdd:COG4942 87 ELE----KEIAELRAELEAQKEELAELL-----RALYRLGRQPPLALLLSPedfldavrrlqyLKYLAPARREQAEELRA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 475 QLDAFEAEKQALLNEHGATQEQLNKIRDSYAQLLGHQNLKQKIkhvvklkdeNSQLKSEVSKLRSQLVKRKQNELRLQGE 554
Cdd:COG4942 158 DLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKL---------LARLEKELAELAAELAELQQEAEELEAL 228
|
....
gi 568971767 555 LDKA 558
Cdd:COG4942 229 IARL 232
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
47-239 |
2.82e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 2.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 47 TEKLLEYIQEISCASDQVEKCKVDIAQLEEDLKEkDREILSLKQSLEEnitFSKQIEDLtvkcQLLETERDNLvSKDRER 126
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDA-LQERREALQRLAE---YSWDEIDV----ASAEREIAEL-EAELER 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 127 AETLSAEMQILTERLALERQEYEKL-QQKELQSQSLLQQEKELsARLQQQLCSFQEEMTSEKNVFKEELKLALAELDAVQ 205
Cdd:COG4913 680 LDASSDDLAALEEQLEELEAELEELeEELDELKGEIGRLEKEL-EQAEEELDELQDRLEAAEDLARLELRALLEERFAAA 758
|
170 180 190
....*....|....*....|....*....|....
gi 568971767 206 QKEEQSERLVKQLEEETKSTAEQLTRLDNLLREK 239
Cdd:COG4913 759 LGDAVERELRENLEERIDALRARLNRAEEELERA 792
|
|
| Gp58 |
pfam07902 |
gp58-like protein; Sequences found in this family are derived from a number of bacteriophage ... |
105-309 |
3.22e-03 |
|
gp58-like protein; Sequences found in this family are derived from a number of bacteriophage and prophage proteins. They are similar to gp58, a minor structural protein of Lactococcus delbrueckii bacteriophage LL-H.
Pssm-ID: 369586 [Multi-domain] Cd Length: 594 Bit Score: 40.32 E-value: 3.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 105 LTVKCQLLETERDNLVSKDRERAETLSAEMQILTERLALERQEYEKLQQKELQSQsllqqEKELSARLQQQLCSFQEEMT 184
Cdd:pfam07902 108 LNNNGMLREYHNDTIKTEIVESAEGIATRISEDTDKKLALINETISGIRREYQDA-----DRQLSSSYQAGIEGLKATMA 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 185 SEKNVFKEELKLALAELdaVQQKEEQSERLVKQLEEETKSTAEQL-TRLDNLLRE-------KEVELEKHIAA-----HA 251
Cdd:pfam07902 183 SDKIGLQAEIQASAQGL--SQRYDNEIRKLSAKITTTSSGTTEAYeSKLDDLRAEftrsnqgMRTELESKISGlqstqQS 260
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568971767 252 QAILIAQEKYNDTAQSLRdVTAQLESVQEKYNDTAQ---SLRDVTAQLESEQEKYNDTAQS 309
Cdd:pfam07902 261 TAYQISQEISNREGAVSR-VQQDLDSYQRRLQDAEKnysSLTQTVKGLQSTVSDPNSKLES 320
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
13-546 |
3.45e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 3.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 13 QATQKDLTESKGKIVQLEGKLVSIEK--EKIDEKCETEKLLEYIQEISCASDQVEKCKVDIAQLEEDLKEKDREILSLKQ 90
Cdd:TIGR00618 256 LKKQQLLKQLRARIEELRAQEAVLEEtqERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVK 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 91 SLEENITFSKQIEDLTVKCQLLETERDNLVS---------KDRERAETLSAEMQILTERLALERQEYEKLQQK------E 155
Cdd:TIGR00618 336 QQSSIEEQRRLLQTLHSQEIHIRDAHEVATSireiscqqhTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREqatidtR 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 156 LQSQSLLQQEK-------ELSARLQQQLCSFQEEMTSEKNVFKEELKLALAELDAVQQKEEQSERLVKQLEEETKSTAEQ 228
Cdd:TIGR00618 416 TSAFRDLQGQLahakkqqELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLAR 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 229 LTRLDNLLREKEvELEKHIAAHAQAILIaqekyndtaqsLRDVTAQLESVQEKYNDTAQSLRDVTAQLESEQEK---YND 305
Cdd:TIGR00618 496 LLELQEEPCPLC-GSCIHPNPARQDIDN-----------PGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQrasLKE 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 306 TAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKSVEDVQQQILTAESTNQ 385
Cdd:TIGR00618 564 QMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELAL 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 386 EYARMVQDLQNRSTLKEEEIKEITSSFLEKITDLKNQLRQQDEDFRKQLEEKGKRTAEKENVMTELTMEINKWRLLYEEL 465
Cdd:TIGR00618 644 KLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEI 723
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 466 YEKTKPFQQQLDAFEAEKQALLNEHGATQEQLNKirdsyAQLLGHQNLKQKIKHVVKLKDENSQLKSEVSKLRSQLVKRK 545
Cdd:TIGR00618 724 ENASSSLGSDLAAREDALNQSLKELMHQARTVLK-----ARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDT 798
|
.
gi 568971767 546 Q 546
Cdd:TIGR00618 799 H 799
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
122-260 |
3.89e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.56 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 122 KDRERAEtLSAEMQILTERLALERQeyeklqqkelQSQSLLQQEKELSARLqqqlcsfqeemtSEKNVFKEELKLALAEL 201
Cdd:PRK09039 51 KDSALDR-LNSQIAELADLLSLERQ----------GNQDLQDSVANLRASL------------SAAEAERSRLQALLAEL 107
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 202 -DAVQQKEEQSERLVKQLEEETKSTAEQLTRLDnLLREKEVELEKHIAAHAQAILIAQEK 260
Cdd:PRK09039 108 aGAGAAAEGRAGELAQELDSEKQVSARALAQVE-LLNQQIAALRRQLAALEAALDASEKR 166
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
101-588 |
4.12e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 4.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 101 QIEDLTVKCQLLETERDNLVSKDRERAETLSAEMQILTERLALERQEYEKLQQKELQSQSLLQQEKELS-ARLQQQLCSF 179
Cdd:TIGR00618 195 KAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKqLRARIEELRA 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 180 QE---EMTSEKNVFKEELKLALAELDAVQQKEEQSERLVKQLEEETKSTAEQLTRLDNLLR---EKEVELEKHIAAHAQA 253
Cdd:TIGR00618 275 QEavlEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKqqsSIEEQRRLLQTLHSQE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 254 ILIAQE--------KYNDTAQSLRDVTAQLESVQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESEQEkyn 325
Cdd:TIGR00618 355 IHIRDAhevatsirEISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKK--- 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 326 dTAQSLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKSVEDVQQQILTAESTNQEYARMVQDLQNRSTLKEEE- 404
Cdd:TIGR00618 432 -QQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSc 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 405 -----------IKEITSSFLEKITDLKNQLRQQDEDFRKQLEEKGKRTAEKENVMTELTMEINKWRLLYEELYEKTKPFQ 473
Cdd:TIGR00618 511 ihpnparqdidNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQ 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 474 QQLDAFEAEKQALLNEHGATQEQLnkiRDSYAQLLGHQNLKQKIKHVVKLKDENSQLKSEVSKLRSQLVKRKQNELRLQG 553
Cdd:TIGR00618 591 NITVRLQDLTEKLSEAEDMLACEQ---HALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSI 667
|
490 500 510
....*....|....*....|....*....|....*
gi 568971767 554 ELDKALGIRHFDPSKAFCHASKENFTPLKEGNPNC 588
Cdd:TIGR00618 668 RVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQC 702
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
125-322 |
4.51e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 4.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 125 ERAETLSAEMQILTErlalERQEYEKLQQKelqsQSLLQQEKELSARLQQQL--CSFQEEMTSEKNVFKEELKLALAElD 202
Cdd:COG4913 225 EAADALVEHFDDLER----AHEALEDAREQ----IELLEPIRELAERYAAARerLAELEYLRAALRLWFAQRRLELLE-A 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 203 AVQQKEEQSERLVKQLEEETKSTAEQLTRLDNLLR-------EKEVELEKHIAAHAQAILIAQEKYNDTAQSLRDVTAQL 275
Cdd:COG4913 296 ELEELRAELARLEAELERLEARLDALREELDELEAqirgnggDRLEQLEREIERLERELEERERRRARLEALLAALGLPL 375
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568971767 276 ESVQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDV-------TAQLESEQE 322
Cdd:COG4913 376 PASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAlrdlrreLRELEAEIA 429
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
65-584 |
5.42e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.12 E-value: 5.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 65 EKCKVDIAQLEEDLKEKDReilsLKQSLEEnitfSKQIEDLTVKCQLLETERDNLVSKDRER---AETLSAEMQILTERL 141
Cdd:PTZ00121 1288 EKKKADEAKKAEEKKKADE----AKKKAEE----AKKADEAKKKAEEAKKKADAAKKKAEEAkkaAEAAKAEAEAAADEA 1359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 142 --ALERQEYEKLQQKELQSQSLLQQEKELSARLQQQLCSFQEEMTSEKnvfkEELKLALAELDAVQQKEEQSERLVKQle 219
Cdd:PTZ00121 1360 eaAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA----DELKKAAAAKKKADEAKKKAEEKKKA-- 1433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 220 EETKSTAEQLTRLDNLLREKEvELEKHIAAHAQAiliAQEKYNDTAQSLRDVTAQLESVQEKYNDTAQSLRDVTAQLESE 299
Cdd:PTZ00121 1434 DEAKKKAEEAKKADEAKKKAE-EAKKAEEAKKKA---EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK 1509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 300 QEkyndtAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESYKSSTLKEIEDLKleNLTLQEKVAMAEKSVEDVQQQILT 379
Cdd:PTZ00121 1510 KK-----ADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELK--KAEEKKKAEEAKKAEEDKNMALRK 1582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 380 AESTNQ-EYARMVQDLQNRSTLKEEEIKEITSSFLEKItdlKNQLRQQDEDFRKQLEEKGKRTAEKENVMTELTMEINKW 458
Cdd:PTZ00121 1583 AEEAKKaEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI---KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN 1659
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 459 RLLYEELYEKTKPFQQQLDAFEAEKQALLNEHGATQEQLNKIRDSYAQLLGHQNLKQKIKHVVKLKDENsQLKSEVSKLR 538
Cdd:PTZ00121 1660 KIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEEN-KIKAEEAKKE 1738
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 568971767 539 SQLVKRKQNELRLQGELDKALGIRHFDPSKAFCHASKENFTPLKEG 584
Cdd:PTZ00121 1739 AEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEE 1784
|
|
| tape_meas_lam_C |
TIGR01541 |
phage tail tape measure protein, lambda family; This model represents a relatively ... |
159-351 |
5.98e-03 |
|
phage tail tape measure protein, lambda family; This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. [Mobile and extrachromosomal element functions, Prophage functions]
Pssm-ID: 273681 [Multi-domain] Cd Length: 332 Bit Score: 39.05 E-value: 5.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 159 QSLLQQEKELSArLQQQLCSFQEEMTSEKNVFKEELKLALAELDAVQQKEEqserLVKQLEEETKSTAEQLTR-LDNL-L 236
Cdd:TIGR01541 3 LLLLTQQIADRK-LKKLNTADEKSLQSRSDEIIALIKLEKLLEEAEQKALE----ALKKLAEATASIRAQNKRqLDRFgL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 237 REKEVElekHIAAHAQailIAQEKYNDTAQSLRDVTAQLESVQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLR-DVTA 315
Cdd:TIGR01541 78 GDKQRE---RLDARLQ---IDRTFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIKASLNEALAELHAYYAAEDALQgDWLA 151
|
170 180 190
....*....|....*....|....*....|....*.
gi 568971767 316 QLESEQEKYNDTAQslrDVTAQLESYKSSTLKEIED 351
Cdd:TIGR01541 152 GARSGLADYGETAT---NVASATAQLATNAFGGMAS 184
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
196-540 |
6.29e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 39.65 E-value: 6.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 196 LALAELDAVQQKEEQSERLVKQLEEETK----STAEQLTRLDNLLREKEVELEKhIAAHAQAI-----LIA--QEKYNDT 264
Cdd:PRK10929 13 LSWGAYAATAPDEKQITQELEQAKAAKTpaqaEIVEALQSALNWLEERKGSLER-AKQYQQVIdnfpkLSAelRQQLNNE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 265 AQSLRDVTAQLES--VQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLrdvtAQLESEQEkynDTAQSLRDVTAQLESYK 342
Cdd:PRK10929 92 RDEPRSVPPNMSTdaLEQEILQVSSQLLEKSRQAQQEQDRAREISDSL----SQLPQQQT---EARRQLNEIERRLQTLG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 343 SSTLKEIEdlkLENLTLQEKVAMAEKSVEDVQQQILTAeSTNQEYARMVQDL-QNRSTLKEEEIKEITSSFlekitdlkN 421
Cdd:PRK10929 165 TPNTPLAQ---AQLTALQAESAALKALVDELELAQLSA-NNRQELARLRSELaKKRSQQLDAYLQALRNQL--------N 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 422 QLRQQDEDfrKQLEEKGKRTAEKENVMTELTMEINKWRLLYEELYEKTkpfqQQLDAFEAEKQALLNEHGATQEQLNKIR 501
Cdd:PRK10929 233 SQRQREAE--RALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQA----QRMDLIASQQRQAASQTLQVRQALNTLR 306
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 568971767 502 DSyAQLLGHQNL--KQKIKHVVKLKD--ENSQLKSEVSKLRSQ 540
Cdd:PRK10929 307 EQ-SQWLGVSNAlgEALRAQVARLPEmpKPQQLDTEMAQLRVQ 348
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
48-503 |
8.55e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.13 E-value: 8.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 48 EKLLEYIQEISCASDQVEKCKVDIAQLEEDLKEKDREILSLKQSLEENITfsKQIEDLTVKCQLLETERDNLvskdRERA 127
Cdd:COG4913 288 RRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGG--DRLEQLEREIERLERELEER----ERRR 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 128 ETLSAEMQILTERLALERQEYEKLQQkelQSQSLLQQEKELSARLQQQLcsfqEEMTSEKNVFKEELKLALAELDAVQQK 207
Cdd:COG4913 362 ARLEALLAALGLPLPASAEEFAALRA---EAAALLEALEEELEALEEAL----AEAEAALRDLRRELRELEAEIASLERR 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 208 ----EEQSERLVKQLEEETKSTAEQLTRLDNLL--REKEVE----LEKHIAAHAQAILI-------AQEKYNDTAQSLRD 270
Cdd:COG4913 435 ksniPARLLALRDALAEALGLDEAELPFVGELIevRPEEERwrgaIERVLGGFALTLLVppehyaaALRWVNRLHLRGRL 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 271 VTAQLESVQEKYN-------------------------------------DTAQSLRDVT-------------------- 293
Cdd:COG4913 515 VYERVRTGLPDPErprldpdslagkldfkphpfrawleaelgrrfdyvcvDSPEELRRHPraitragqvkgngtrhekdd 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 294 ------------------AQLESEQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESYK--SSTLKEIEDL- 352
Cdd:COG4913 595 rrrirsryvlgfdnraklAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdvASAEREIAELe 674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 353 -KLENLTL-QEKVAMAEKSVEDVQQQILTAESTNQEYARMVQDLQNRSTLKEEEIKEITSSFLEKITDLKNQLRQQDEDF 430
Cdd:COG4913 675 aELERLDAsSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEER 754
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568971767 431 RKQLEEKGKRTAEKENVMTELTMEINKWRLLYEELYEKTKPFQQQLDAFEAEKQALLNEHGATQEQLNKIRDS 503
Cdd:COG4913 755 FAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEED 827
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
112-522 |
8.78e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 38.98 E-value: 8.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 112 LETERDNLVSKDRERAETLSAEMQILTERLALERQEYEKLQQKELQSQSLLQQEKELSARLQQ---------------QL 176
Cdd:COG4717 51 LEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEElreeleklekllqllPL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 177 CSFQEEMTSEKNVFKEELKLALAELDAVQQKEEQSERLVKQLEEETKSTAEQLTRLDNLLREKEVELEKHIAAHAQAILI 256
Cdd:COG4717 131 YQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAE 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 257 AQEKYNDTAQSLRDVTAQLESVQEKYNDTAQ------------------SLRDVTAQLESEQEKYNDTAQSLRDVTAQLE 318
Cdd:COG4717 211 LEEELEEAQEELEELEEELEQLENELEAAALeerlkearlllliaaallALLGLGGSLLSLILTIAGVLFLVLGLLALLF 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 319 SEQEKYNDTAQSLRDVTAQLESYKSSTLKEIEDLKLE-NLTLQEKVAMAEKSVEDVQQQiltaestnQEYARMVQDLQNR 397
Cdd:COG4717 291 LLLAREKASLGKEAEELQALPALEELEEEELEELLAAlGLPPDLSPEELLELLDRIEEL--------QELLREAEELEEE 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 398 STLKEEEiKEITSSFLEKITDLKNQLRQQDEDFRKQLEEKGKRTAEKENVMTELTMEINKWRLL-YEELYEKTKPFQQQL 476
Cdd:COG4717 363 LQLEELE-QEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALdEEELEEELEELEEEL 441
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 568971767 477 DAFEAEKQALLNEHGATQEQLNKIRDS--YAQLLG-HQNLKQKIKHVVK 522
Cdd:COG4717 442 EELEEELEELREELAELEAELEQLEEDgeLAELLQeLEELKAELRELAE 490
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
191-551 |
9.06e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 38.89 E-value: 9.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 191 KEELKLALAELDAVQQKEEQSERLVKQLEEETKSTAEQLTRLDNLLREKEVELE------KHIAAHAQAILIAQEKYNDT 264
Cdd:PRK03918 171 IKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEklekevKELEELKEEIEELEKELESL 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 265 AQSLRDVTAQLESVQEKYNDTAQSLRDVTAQ---------LESEQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVT 335
Cdd:PRK03918 251 EGSKRKLEEKIRELEERIEELKKEIEELEEKvkelkelkeKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 336 AQLESyKSSTLKEIEDLKLENLTLQEKVAMAEKSVEDVQQ-----QILTAESTNQEYARMVQDLQNRSTLKEEEIKEIts 410
Cdd:PRK03918 331 KELEE-KEERLEELKKKLKELEKRLEELEERHELYEEAKAkkeelERLKKRLTGLTPEKLEKELEELEKAKEEIEEEI-- 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 411 sflEKITDLKNQLRQQDEDFRKQLEE--KGKRTA----------EKENVMTELTMEINKWRLLYEELYEKTKPFQQQLDA 478
Cdd:PRK03918 408 ---SKITARIGELKKEIKELKKAIEElkKAKGKCpvcgrelteeHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRE 484
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568971767 479 FEAE--KQALLNEHGATQEQLNKIRDSYAQlLGHQNLKQKIKHVVKLKDENSQLKSEVSKLRSQLVKRKQNELRL 551
Cdd:PRK03918 485 LEKVlkKESELIKLKELAEQLKELEEKLKK-YNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKL 558
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
358-558 |
9.07e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 38.91 E-value: 9.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 358 TLQEKVAMAEKSVEDVQQ-------QILTAESTNQEYARMVQDLQNRSTLKEEEIKEITSSflekITDLKNQLRQQDEDF 430
Cdd:PRK11637 51 SIQQDIAAKEKSVRQQQQqrasllaQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNAS----IAKLEQQQAAQERLL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971767 431 RKQLEeKGKRTAEKENVMTELTMEINKWR--------LLYEELYEKTKPFQQQLDAFEAEKQALLNEHGATQEQLNKIRD 502
Cdd:PRK11637 127 AAQLD-AAFRQGEHTGLQLILSGEESQRGerilayfgYLNQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQA 205
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568971767 503 SYAQLLGHQNLKQKIKhvvklkdenSQLKSEVSKLRSQLVKRKQNELRLQGELDKA 558
Cdd:PRK11637 206 QQQKLEQARNERKKTL---------TGLESSLQKDQQQLSELRANESRLRDSIARA 252
|
|
| |
