|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
424-718 |
1.44e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 98.09 E-value: 1.44e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 424 LHELEKNL-------------MQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEARE 490
Cdd:COG1196 195 LGELERQLeplerqaekaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 491 QLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELS 570
Cdd:COG1196 275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 571 EGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALE 650
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE 434
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568957246 651 EEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKD 718
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
383-688 |
1.65e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 91.54 E-value: 1.65e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 383 EKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEA 462
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 463 RQstskiDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLH 542
Cdd:COG1196 301 EQ-----DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 543 KLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLE 622
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568957246 623 EELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSR 688
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
336-713 |
3.55e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 90.51 E-value: 3.55e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 336 VEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDketvfLQYRLQDLQqqYTESQKLSLKKDK 415
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQA-----LLKEKREYE--GYELLKEKEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 416 LLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDT---SLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQL 492
Cdd:TIGR02169 238 QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKkikDLGEEEQLRVKEKIGELEAEIASLERSIAEKEREL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 493 KVSDQNLTQSKEEAHLSASSLEDAHRKIEncllqdkqkeevikDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEG 572
Cdd:TIGR02169 318 EDAEERLAKLEAEIDKLLAEIEELEREIE--------------EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 573 QRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEE 652
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD 463
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568957246 653 IEALRQEAKRKekmaKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEI 713
Cdd:TIGR02169 464 LSKYEQELYDL----KEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASI 520
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
422-687 |
2.01e-17 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 87.82 E-value: 2.01e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 422 ERLHELEKNLmqvqNSLREKEAELEKLqctTKELDTSLQEARQSTSKI--DCEALRAEIQKLKDSLEEAREQLKVSDQNL 499
Cdd:TIGR02169 681 ERLEGLKREL----SSLQSELRRIENR---LDELSQELSDASRKIGEIekEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 500 TQSKEEAHLSASSLEDAHRKIENclLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNA 579
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHK--LEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 580 EKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALR-- 657
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSI-------EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELErk 904
|
250 260 270
....*....|....*....|....*....|.
gi 568957246 658 -QEAKRKEKMAKEHLRKLDEEKENLQAELTS 687
Cdd:TIGR02169 905 iEELEAQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
423-734 |
3.16e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 87.30 E-value: 3.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 423 RLHELEKNLMQVQNSLREKEAELEKL--QCTTKELDTSLQEARQstsKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLT 500
Cdd:COG1196 180 KLEATEENLERLEDILGELERQLEPLerQAEKAERYRELKEELK---ELEAELLLLKLRELEAELEELEAELEELEAELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 501 QSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAE 580
Cdd:COG1196 257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 581 KEKSLLQKTLDEDEKKIDELfhsTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEA 660
Cdd:COG1196 337 EELEELEEELEEAEEELEEA---EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL 413
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568957246 661 KRKEKMAKEHLRKLDEEKENLQAELTSRsSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKE 734
Cdd:COG1196 414 ERLERLEEELEELEEALAELEEEEEEEE-EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
471-802 |
1.67e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.99 E-value: 1.67e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 471 CEALRAEIQKLKDSLEEAREQLKVSdQNLTQSKEEAHLSASSLEDAHRKienclLQDKQKEEVIKDLQSQLHKLQKESSK 550
Cdd:COG1196 191 LEDILGELERQLEPLERQAEKAERY-RELKEELKELEAELLLLKLRELE-----AELEELEAELEELEAELEELEAELAE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 551 IEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLdedekkidelfhstQVSEQKQRELTNSIRKLEEELLEIKG 630
Cdd:COG1196 265 LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDI--------------ARLEERRRELEERLEELEEELAELEE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 631 LLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSL---NKYNSSQKVIQ 707
Cdd:COG1196 331 ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAelaAQLEELEEAEE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 708 ELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVS-KEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQ 786
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEEEALEEaAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
330
....*....|....*.
gi 568957246 787 ERKAQLEDEIAAYEER 802
Cdd:COG1196 491 ARLLLLLEAEADYEGF 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
319-963 |
1.47e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.03 E-value: 1.47e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 319 TKILKHLQEQKDSqcLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDKETVFLQYRLQD 398
Cdd:TIGR02168 212 AERYKELKAELRE--LELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK----LEELRLEVSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 399 LQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEArqstsKIDCEALRAEI 478
Cdd:TIGR02168 286 LQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL-----KEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 479 QKLKDSLEEAREQLKVSDQNLTQSKEEahlsassledahrkiencllqdkqkeevIKDLQSQLHKLQKESSKIEEERKHN 558
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLETLRSK----------------------------VAQLELQIASLNNEIERLEARLERL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 559 RQRLQELSSELSEGQRRLSNAEKEKslLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQ 638
Cdd:TIGR02168 413 EDRRERLQQEIEELLKKLEEAELKE--LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 639 LKKSKEQEKALEEEIEALRQEAKRKEKMAKEH-----LRKLDEEKEnlQAELTSRSSHLDSSLNKYNSSQKVIQELNAEI 713
Cdd:TIGR02168 491 LDSLERLQENLEGFSEGVKALLKNQSGLSGILgvlseLISVDEGYE--AAIEAALGGRLQAVVVENLNAAKKAIAFLKQN 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 714 ARQKDSIMILQTQLDSAIQ--------KEKNCFQNMVSKEAYEELVRKSGN-------CQDDLTQALEKLTQ-------- 770
Cdd:TIGR02168 569 ELGRVTFLPLDSIKGTEIQgndreilkNIEGFLGVAKDLVKFDPKLRKALSyllggvlVVDDLDNALELAKKlrpgyriv 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 771 ------------ATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQV 838
Cdd:TIGR02168 649 tldgdlvrpggvITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 839 lqwqRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTP--KETCRHHRENDQIMNNVEQWAKEQKIA 916
Cdd:TIGR02168 729 ----SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEelAEAEAEIEELEAQIEQLKEELKALREA 804
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 568957246 917 NEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKK 963
Cdd:TIGR02168 805 LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS 851
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
473-812 |
1.53e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 81.65 E-value: 1.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 473 ALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIE 552
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 553 EERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDE-KKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGL 631
Cdd:TIGR02169 751 QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 632 LEEKREQLKKS----KEQEKALEEEIEALRQEAKRKEKMAKEH---LRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQK 704
Cdd:TIGR02169 831 LEKEIQELQEQridlKEQIKSIEKEIENLNGKKEELEEELEELeaaLRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 705 VIQELNAEIARQKDSIMILQTQLdSAIQKEKNCFQNMVSKEAYEELVRKSgncQDDLTQALEKL----TQATSETKSLNR 780
Cdd:TIGR02169 911 QIEKKRKRLSELKAKLEALEEEL-SEIEDPKGEDEEIPEEELSLEDVQAE---LQRVEEEIRALepvnMLAIQEYEEVLK 986
|
330 340 350
....*....|....*....|....*....|..
gi 568957246 781 SLQQTQERKAQLEDEIAAYEERMKKLNmELKK 812
Cdd:TIGR02169 987 RLDELKEKRAKLEEERKAILERIEEYE-KKKR 1017
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
250-887 |
2.46e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.14 E-value: 2.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 250 QETLKRLSEVWQKVSEQDDLIQELRNKLacsNSLVLEREEAL--IKLQAEFASYTATHRHpptssedceditKILKHLQE 327
Cdd:COG1196 175 EEAERKLEATEENLERLEDILGELERQL---EPLERQAEKAEryRELKEELKELEAELLL------------LKLRELEA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 328 QKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCV---IEKKDKETVFLQYRLQDLQQQYT 404
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELlaeLARLEQDIARLEERRRELEERLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 405 ESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKlqcttkeldtsLQEARQstskidcEALRAEIQKLKDS 484
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE-----------AEEALL-------EAEAELAEAEEEL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 485 LEEAREQLKVSDQNLTQSKEEAHLsASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQE 564
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEEL-EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 565 LSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKidelfHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKE 644
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAAR-----LLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAA 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 645 QEKALEEEIEALRQEAKRKE----KMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSI 720
Cdd:COG1196 536 YEAALEAALAAALQNIVVEDdevaAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARY 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 721 MILQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGncqDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYE 800
Cdd:COG1196 616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVT---LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 801 ERMKKLNMELKKLQgfqqqseqevhnfdkklEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEP 880
Cdd:COG1196 693 LELEEALLAEEEEE-----------------RELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
....*..
gi 568957246 881 YSPPAKL 887
Cdd:COG1196 756 LPEPPDL 762
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
245-814 |
3.53e-15 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 80.49 E-value: 3.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 245 VIQEHQETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHrhpptssEDCEDITKILKH 324
Cdd:PRK03918 170 VIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV-------KELEELKEEIEE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 325 LQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLElDLHGLREETSCVIEKKDKETVFLqYRLQDLQQQYT 404
Cdd:PRK03918 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDEL-REIEKRLSRLE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 405 ESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQcTTKELDTSLQEARQSTSKIDCEALRAEIQKL--- 481
Cdd:PRK03918 321 EEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYE-EAKAKKEELERLKKRLTGLTPEKLEKELEELeka 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 482 KDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENC--LLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNR 559
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCgrELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 560 QRLQELSSELSEGQRRLSNAEKEKSLlqKTLDEDEKKIDelfhsTQVSEQKQRELtnsiRKLEEELLEIKGlleeKREQL 639
Cdd:PRK03918 480 KELRELEKVLKKESELIKLKELAEQL--KELEEKLKKYN-----LEELEKKAEEY----EKLKEKLIKLKG----EIKSL 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 640 KKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDs 719
Cdd:PRK03918 545 KKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKK- 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 720 imiLQTQLDSA-------------IQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQ 786
Cdd:PRK03918 624 ---LEEELDKAfeelaetekrleeLRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLK 700
|
570 580
....*....|....*....|....*...
gi 568957246 787 ERKaqleDEIAAYEERMKKLNMELKKLQ 814
Cdd:PRK03918 701 EEL----EEREKAKKELEKLEKALERVE 724
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
322-879 |
4.79e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.10 E-value: 4.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 322 LKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREE---TSCVIEKKDKETVFLQYRLQD 398
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 399 LQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQstskiDCEALRAEI 478
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE-----QLETLRSKV 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 479 QKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQ-----KEEVIKDLQSQLHKLQKESSKIEE 553
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQaeleeLEEELEELQEELERLEEALEELRE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 554 ERKHNRQRLQELSSELSEGQRRL-----------------SNAEKEKSL-----------------------------LQ 587
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLdslerlqenlegfsegvKALLKNQSGlsgilgvlselisvdegyeaaieaalggrLQ 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 588 KTLDEDEKKIDELFHS--------------TQVSEQKQRELTNSIRK-----------LEEELLEIKGLLE--------- 633
Cdd:TIGR02168 549 AVVVENLNAAKKAIAFlkqnelgrvtflplDSIKGTEIQGNDREILKniegflgvakdLVKFDPKLRKALSyllggvlvv 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 634 ---------------------------------------------EKREQLKKSKEQEKALEEEIEALRQEAKRKEKM-- 666
Cdd:TIGR02168 629 ddldnalelakklrpgyrivtldgdlvrpggvitggsaktnssilERRREIEELEEKIEELEEKIAELEKALAELRKEle 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 667 -AKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKE 745
Cdd:TIGR02168 709 eLEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 746 AyeelvrKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVH 825
Cdd:TIGR02168 789 A------QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 568957246 826 NFDKKLEEMsnqvlqwQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKE 879
Cdd:TIGR02168 863 ELEELIEEL-------ESELEALLNERASLEEALALLRSELEELSEELRELESK 909
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
433-816 |
6.51e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.72 E-value: 6.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 433 QVQNSLREKEAELEKLQCTTKELDTSLQearqstsKIDCEALRAEI-QKLKDSLEEAreqlkvsdqnltqskeEAHLSAS 511
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILNELERQLK-------SLERQAEKAERyKELKAELREL----------------ELALLVL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 512 SLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQkesskieeerkhnrqrlqelsSELSEGQRRLSNAEKEKSLLQKTLD 591
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELE---------------------EKLEELRLEVSELEEEIEELQKELY 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 592 EDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEK---MAK 668
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAeleELE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 669 EHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAiQKEKNCFQNMVSKEAYE 748
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA-ELKELQAELEELEEELE 450
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568957246 749 ELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGF 816
Cdd:TIGR02168 451 ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGL 518
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
322-873 |
1.51e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.44 E-value: 1.51e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 322 LKHLQEQKDSQclhvEEYQNLVKDLR--------MELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDKETVFLQ 393
Cdd:COG1196 202 LEPLERQAEKA----ERYRELKEELKeleaelllLKLRELEAELEELEAELEELEAELEELEAE----LAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 394 YRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQstskiDCEA 473
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE-----ELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 474 LRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEE 553
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 554 ERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLE 633
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 634 EKREQLKKS----------------KEQEKALEEEIEALRQEAKRKE----KMAKEHLRKLDEEKENLQAELTSRSSHLD 693
Cdd:COG1196 509 GVKAALLLAglrglagavavligveAAYEAALEAALAAALQNIVVEDdevaAAAIEYLKAAKAGRATFLPLDKIRARAAL 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 694 SSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATS 773
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 774 ETKSLNRSLQQTQE----RKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDL 849
Cdd:COG1196 669 ELLAALLEAEAELEelaeRLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
570 580
....*....|....*....|....*...
gi 568957246 850 KMLAAKESQ----LREFQEEMATLRESL 873
Cdd:COG1196 749 EEEALEELPeppdLEELERELERLEREI 776
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
511-879 |
3.99e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 77.03 E-value: 3.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 511 SSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEE----ERKHNRQRLQELSSELSEGQRRLSNAEKEKSLL 586
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERyqalLKEKREYEGYELLKEKEALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 587 QKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKL-EEELLEIKGLLEEKREQLKKSKEQEKALEEEIEalrqEAKRKEK 665
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELE----DAEERLA 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 666 MAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIarqkdsimilqtqldsaiqkekncfqnmvske 745
Cdd:TIGR02169 326 KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL-------------------------------- 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 746 ayEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVH 825
Cdd:TIGR02169 374 --EEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK 451
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 568957246 826 NFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKE 879
Cdd:TIGR02169 452 KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
433-721 |
4.33e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 4.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 433 QVQNSLREKEAELEKLQCTTKELdtslqearqstsKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASS 512
Cdd:TIGR02168 667 KTNSSILERRREIEELEEKIEEL------------EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 513 LEDAHRKIENCLLQ-------DKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSL 585
Cdd:TIGR02168 735 LARLEAEVEQLEERiaqlskeLTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 586 LQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRkek 665
Cdd:TIGR02168 815 LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL--- 891
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 568957246 666 mAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIM 721
Cdd:TIGR02168 892 -LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
165-890 |
5.40e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 5.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 165 KSTGEKLHLAQEQLALAGDKILSLERSLNLYRDKYQTSLSNIELLEcQVKMLEGELSGLIGQDPENKgdhpkvriytspc 244
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKA-ELRELELALLVLRLEELREE------------- 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 245 vIQEHQETLKRLSevwQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTAthrhpptsseDCEDITKILKH 324
Cdd:TIGR02168 241 -LEELQEELKEAE---EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN----------EISRLEQQKQI 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 325 LQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDKETVFLQYRLQDLQQQYT 404
Cdd:TIGR02168 307 LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE----LEELEAELEELESRLEELEEQLE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 405 ESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLKDS 484
Cdd:TIGR02168 383 TLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEA 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 485 LEEAREQLKVSDQNLTQSKEEAHLSAS------SLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSK-------- 550
Cdd:TIGR02168 463 LEELREELEEAEQALDAAERELAQLQArldsleRLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGyeaaieaa 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 551 -------------------IEEERKHNRQR-------------LQELSSELSEGQRR----LSNAEKEKSLLQKTLD--- 591
Cdd:TIGR02168 543 lggrlqavvvenlnaakkaIAFLKQNELGRvtflpldsikgteIQGNDREILKNIEGflgvAKDLVKFDPKLRKALSyll 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 592 -------------EDEKKID----------ELFHSTQVSEQKQRELTNS-------IRKLEEELLEIKGLLEEKREQLKK 641
Cdd:TIGR02168 623 ggvlvvddldnalELAKKLRpgyrivtldgDLVRPGGVITGGSAKTNSSilerrreIEELEEKIEELEEKIAELEKALAE 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 642 SKEQEKALEEEIEALRQEAKRKEK---MAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKD 718
Cdd:TIGR02168 703 LRKELEELEEELEQLRKELEELSRqisALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 719 SIMILQTQLDSAIQkekncfQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAA 798
Cdd:TIGR02168 783 EIEELEAQIEQLKE------ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES 856
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 799 YEERMK-------KLNMELKKLQGFQQQSEQEVH-------NFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQE 864
Cdd:TIGR02168 857 LAAEIEeleelieELESELEALLNERASLEEALAllrseleELSEELRELESKRSELRRELEELREKLAQLELRLEGLEV 936
|
810 820
....*....|....*....|....*.
gi 568957246 865 EMATLRESLLADEKEPYSPPAKLTPK 890
Cdd:TIGR02168 937 RIDNLQERLSEEYSLTLEEAEALENK 962
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
528-872 |
1.83e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 71.64 E-value: 1.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 528 KQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvs 607
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL------- 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 608 EQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEI--EALRQEAKRKEKMAKEHlRKLDEEKENLQAEL 685
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLshSRIPEIQAELSKLEEEV-SRIEARLREIEQKL 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 686 TSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDS--AIQKEKNCFQNMVSKEaYEELVRKSGNCQDDLTQ 763
Cdd:TIGR02169 822 NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEleEELEELEAALRDLESR-LGDLKKERDELEAQLRE 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 764 ALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKL------NMELKKLQGFQQQSEQEVHNF---DKKLEEM 834
Cdd:TIGR02169 901 LERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDeeipeeELSLEDVQAELQRVEEEIRALepvNMLAIQE 980
|
330 340 350
....*....|....*....|....*....|....*...
gi 568957246 835 SNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRES 872
Cdd:TIGR02169 981 YEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
245-685 |
2.21e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 71.22 E-value: 2.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 245 VIQEHQETLKRLSEVWQKV-----------SEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTAThrhpptsSE 313
Cdd:PRK02224 242 VLEEHEERREELETLEAEIedlretiaeteREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAV-------EA 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 314 DCEDITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLRE---ETSCVIEKKDKETV 390
Cdd:PRK02224 315 RREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREaveDRREEIEELEEEIE 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 391 FLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKEldtslQEARQSTSKID 470
Cdd:PRK02224 395 ELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECG-----QPVEGSPHVET 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 471 CEALRAEIQKLKDSLEEAREQLKVSDQNLTQSkEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSK 550
Cdd:PRK02224 470 IEEDRERVEELEAELEDLEEEVEEVEERLERA-EDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAE 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 551 IEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvseQKQRELTNSIRKLEEELLEIKG 630
Cdd:PRK02224 549 LEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLL--------AAIADAEDEIERLREKREALAE 620
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568957246 631 LLEEKREQLKKSKEQEKALEEE-----IEALRQEAKRKEKM---AKEHLRKLDEEKENLQAEL 685
Cdd:PRK02224 621 LNDERRERLAEKRERKRELEAEfdearIEEAREDKERAEEYleqVEEKLDELREERDDLQAEI 683
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
418-877 |
2.45e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 71.22 E-value: 2.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 418 QDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIdcEALRAEIQKL--------------KD 483
Cdd:PRK02224 202 KDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREEL--ETLEAEIEDLretiaeterereelAE 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 484 SLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKD-------LQSQLHKLQKESSKIEEERK 556
Cdd:PRK02224 280 EVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEEcrvaaqaHNEEAESLREDADDLEERAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 557 HNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKID---------ELFHSTQVSE-----QKQRELTNSIRKLE 622
Cdd:PRK02224 360 ELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGdapvdlgnaEDFLEELREErdelrEREAELEATLRTAR 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 623 EELLEIKGLLE---------------------EKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAK--EHLRKLDEEKE 679
Cdd:PRK02224 440 ERVEEAEALLEagkcpecgqpvegsphvetieEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEaeDRIERLEERRE 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 680 NLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVS-KEAYEELvrksgncq 758
Cdd:PRK02224 520 DLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAElKERIESL-------- 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 759 DDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNME-----LKKLQGFQQQSEQEVHNFDKKLEE 833
Cdd:PRK02224 592 ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEfdearIEEAREDKERAEEYLEQVEEKLDE 671
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 568957246 834 MSNQvlqwQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADE 877
Cdd:PRK02224 672 LREE----RDDLQAEIGAVENELEELEELRERREALENRVEALE 711
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
564-883 |
2.54e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 71.25 E-value: 2.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 564 ELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSK 643
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 644 EQEKALEEEIEALRQEAKRKEkmakEHLRKLDEEKENLQAELtsrsshldsslnkynsSQKVIQELNAEIARQKDSIMIL 723
Cdd:TIGR02169 751 QEIENVKSELKELEARIEELE----EDLHKLEEALNDLEARL----------------SHSRIPEIQAELSKLEEEVSRI 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 724 QTQLDSAIQKEKncfqnmvskeayeelvrksgncqdDLTQALEKLTQATSETKSLNRSLqqtQERKAQLEDEIAAYEERM 803
Cdd:TIGR02169 811 EARLREIEQKLN------------------------RLTLEKEYLEKEIQELQEQRIDL---KEQIKSIEKEIENLNGKK 863
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 804 KKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSP 883
Cdd:TIGR02169 864 EELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED 943
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
310-878 |
3.66e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.48 E-value: 3.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 310 TSSEDCEDITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKET 389
Cdd:PRK03918 162 NAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 390 VfLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVqNSLREKEAELEKLQCTTKELDTSLQEARQSTSKI 469
Cdd:PRK03918 242 E-LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 470 DCEA--LRAEIQKLKDSLEEAREqLKVSDQNLTQSKEEAHLSASSLEDAHRKIENC-LLQDKQKEEVIKDLQSQLHKLQK 546
Cdd:PRK03918 320 EEEIngIEERIKELEEKEERLEE-LKKKLKELEKRLEELEERHELYEEAKAKKEELeRLKKRLTGLTPEKLEKELEELEK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 547 ESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKS---LLQKTLDEDEKK--IDELFHSTQVSEQKQRELTNSIRKL 621
Cdd:PRK03918 399 AKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGkcpVCGRELTEEHRKelLEEYTAELKRIEKELKEIEEKERKL 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 622 EEELLEIKGLLEEKRE--QLKKSKEQEKALEEEIEALRQEakrKEKMAKEHLRKLDEEKENLQAELTSrsshLDSSLNKY 699
Cdd:PRK03918 479 RKELRELEKVLKKESEliKLKELAEQLKELEEKLKKYNLE---ELEKKAEEYEKLKEKLIKLKGEIKS----LKKELEKL 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 700 NSSQKVIQELNAEIARQKDSIMILQTQLdsaiqkekncfqnmvskeayEELVRKSGNCQDDLTQALEKLTQATSETKSLN 779
Cdd:PRK03918 552 EELKKKLAELEKKLDELEEELAELLKEL--------------------EELGFESVEELEERLKELEPFYNEYLELKDAE 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 780 RSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGfqQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQL 859
Cdd:PRK03918 612 KELEREEKELKKLEEELDKAFEELAETEKRLEELRK--ELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRR 689
|
570
....*....|....*....
gi 568957246 860 REFQEEMATLRESLLADEK 878
Cdd:PRK03918 690 EEIKKTLEKLKEELEEREK 708
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
558-814 |
9.79e-12 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 69.56 E-value: 9.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 558 NRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVS--EQKQRELTNSIRKLEEELLEIK---GLL 632
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdEIDVASAEREIAELEAELERLDassDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 633 EEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNsSQKVIQELNAE 712
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF-AAALGDAVERE 766
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 713 IARQkdsimiLQTQLDSAIQKEKNCFQNMVS-----KEAYEELVRKSGNCQDDLTQALEKLTQATSE-----TKSLNRSL 782
Cdd:COG4913 767 LREN------LEERIDALRARLNRAEEELERamrafNREWPAETADLDADLESLPEYLALLDRLEEDglpeyEERFKELL 840
|
250 260 270
....*....|....*....|....*....|....*..
gi 568957246 783 QQTQERK-----AQLEDEIAAYEERMKKLNMELKKLQ 814
Cdd:COG4913 841 NENSIEFvadllSKLRRAIREIKERIDPLNDSLKRIP 877
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
609-967 |
1.11e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.32 E-value: 1.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 609 QKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEaLRQEAKRKEK-MAKEHLRKLDEEKENLQAELTS 687
Cdd:TIGR02168 172 ERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKE-LKAELRELELaLLVLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 688 RSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMvskeayEELVRKSGNCQDDLTQALEK 767
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQK------QILRERLANLERQLEELEAQ 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 768 LTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQvlqwQRQHQS 847
Cdd:TIGR02168 325 LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ----IASLNN 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 848 DLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTPKETCRHHRENDQIMNNVEQWAKEQKIANEKLGNKLREQ 927
Cdd:TIGR02168 401 EIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA 480
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 568957246 928 VKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLKAG 967
Cdd:TIGR02168 481 ERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSG 520
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
473-683 |
1.90e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 67.10 E-value: 1.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 473 ALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIE 552
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 553 EERKHNRQRLQEL------------------SSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQREL 614
Cdd:COG4942 97 AELEAQKEELAELlralyrlgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568957246 615 TNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQA 683
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
506-730 |
2.42e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 66.71 E-value: 2.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 506 AHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSL 585
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 586 LQKTLDEDEKKIDELFHSTQVSEQKQREL----TNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAK 661
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568957246 662 RKEKMAKEhlrkLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSA 730
Cdd:COG4942 175 ELEALLAE----LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
592-879 |
6.68e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.63 E-value: 6.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 592 EDEKKIDELFHSTQVSEQKQRELtNSIRKLEEELLEIKGLLEEKREQLKK-SKEQEKALE-EEIEALRQEAKRKEKMAKe 669
Cdd:TIGR02169 154 ERRKIIDEIAGVAEFDRKKEKAL-EELEEVEENIERLDLIIDEKRQQLERlRREREKAERyQALLKEKREYEGYELLKE- 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 670 hLRKLDEEKENLQAELTSRSSHLDsslnkynSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVS--KEAY 747
Cdd:TIGR02169 232 -KEALERQKEAIERQLASLEEELE-------KLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGelEAEI 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 748 EELVRKSGNCQDDLTQALEKLTQATSE-------TKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQS 820
Cdd:TIGR02169 304 ASLERSIAEKERELEDAEERLAKLEAEidkllaeIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET 383
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568957246 821 EQEVHNFDKKLEEMSNQV-------------LQWQRQHQSDLKM-LAAKESQLREFQEEMATLRESLLADEKE 879
Cdd:TIGR02169 384 RDELKDYREKLEKLKREInelkreldrlqeeLQRLSEELADLNAaIAGIEAKINELEEEKEDKALEIKKQEWK 456
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
423-687 |
1.10e-10 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 65.53 E-value: 1.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 423 RLHELEKNLMQVQNSLREKEAELEKLQcttkeldtSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQS 502
Cdd:pfam05557 3 ELIESKARLSQLQNEKKQMELEHKRAR--------IELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 503 KEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKE 582
Cdd:pfam05557 75 AELNRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 583 KSLL---QKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEE--ELLEIKGLLEEKREQLKKSKEQEKALEEEIEALR 657
Cdd:pfam05557 155 RQNLekqQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSELARipELEKELERLREHNKHLNENIENKLLLKEEVEDLK 234
|
250 260 270
....*....|....*....|....*....|
gi 568957246 658 QEAKRKEKMaKEHLRKLDEEKENLQAELTS 687
Cdd:pfam05557 235 RKLEREEKY-REEAATLELEKEKLEQELQS 263
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
421-879 |
1.13e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 65.86 E-value: 1.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 421 DERLHELEKNLM---QVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIdcEALRAEIQKLKDSLEEAREQLKVSDQ 497
Cdd:PRK03918 175 KRRIERLEKFIKrteNIEELIKEKEKELEEVLREINEISSELPELREELEKL--EKEVKELEELKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 498 NLTQSKEEAHLSASSLEDAHRKIENclLQDKQKE-EVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRL 576
Cdd:PRK03918 253 SKRKLEEKIRELEERIEELKKEIEE--LEEKVKElKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 577 SNAEKEKSLLQKT---LDEDEKKIDELFHSTQVSEqKQRELTNSIRKLEEELL-----EIKGLLEEKREQLKKSKEQEKA 648
Cdd:PRK03918 331 KELEEKEERLEELkkkLKELEKRLEELEERHELYE-EAKAKKEELERLKKRLTgltpeKLEKELEELEKAKEEIEEEISK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 649 LEEEIEALRQEAKRKEKmAKEHLRKLDEEKENLQAELTsrSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLD 728
Cdd:PRK03918 410 ITARIGELKKEIKELKK-AIEELKKAKGKCPVCGRELT--EEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELE 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 729 SAIQKEKNCFQNMVSKEAYEELVRK-SGNCQDDLTQA-------LEKLTQATSETKSLNRSLQQTQE---RKAQLEDEIA 797
Cdd:PRK03918 487 KVLKKESELIKLKELAEQLKELEEKlKKYNLEELEKKaeeyeklKEKLIKLKGEIKSLKKELEKLEElkkKLAELEKKLD 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 798 AYEERMKKLNMELKKLqGFqqQSEQEVHNFDKKLEEMSNQVLQwqrqhqsdlkmLAAKESQLREFQEEMATLRESLLADE 877
Cdd:PRK03918 567 ELEEELAELLKELEEL-GF--ESVEELEERLKELEPFYNEYLE-----------LKDAEKELEREEKELKKLEEELDKAF 632
|
..
gi 568957246 878 KE 879
Cdd:PRK03918 633 EE 634
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
392-625 |
1.95e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 64.01 E-value: 1.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 392 LQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEarqstskidc 471
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE---------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 472 eaLRAEIQKLKDSLeeaREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKI 551
Cdd:COG4942 95 --LRAELEAQKEEL---AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568957246 552 EEErkhnRQRLQELSSELSEGQRRLSNAEKEKsllQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEEL 625
Cdd:COG4942 170 EAE----RAELEALLAELEEERAALEALKAER---QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
110-774 |
3.42e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 3.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 110 ELEFRTQELQASYCSLLQYQSILEKQTSDLLVLHRHCKLKEDEVILYEEEMGNHSKSTGEKLHLAQEQLALAGDKILSLE 189
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 190 RSLNLYRDKYQ---------------------------TSLSN-IELLECQVKMLEGELSGLIGQDPENKGDHPKVRIY- 240
Cdd:TIGR02168 358 AELEELEAELEelesrleeleeqletlrskvaqlelqiASLNNeIERLEARLERLEDRRERLQQEIEELLKKLEEAELKe 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 241 ---TSPCVIQEHQETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLE---REEALIKLQAEFASYTATHRHPPTSSED 314
Cdd:TIGR02168 438 lqaELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQlqaRLDSLERLQENLEGFSEGVKALLKNQSG 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 315 CEDITKILKHL--QEQKDSQCLHV---EEYQNLV-KDLRMELEAVSEQKKKIMKDMMKLELDL----------------- 371
Cdd:TIGR02168 518 LSGILGVLSELisVDEGYEAAIEAalgGRLQAVVvENLNAAKKAIAFLKQNELGRVTFLPLDSikgteiqgndreilkni 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 372 HGLREETSCVIEKKDKETVFLQYRLQDLQ-----QQYTESQKLSLKKDKLLQDKDERLH----------ELEKNLMQVQN 436
Cdd:TIGR02168 598 EGFLGVAKDLVKFDPKLRKALSYLLGGVLvvddlDNALELAKKLRPGYRIVTLDGDLVRpggvitggsaKTNSSILERRR 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 437 SLREKEAELEKLQCTTKELDTSLQEARQSTSKI--DCEALRAEIQKLKDSLEEAREQLKVSD---QNLTQSKEEAHLSAS 511
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELeeELEQLRKELEELSRQISALRKDLARLEaevEQLEERIAQLSKELT 757
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 512 SLED----AHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQ 587
Cdd:TIGR02168 758 ELEAeieeLEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 588 KTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKmA 667
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRR-E 916
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 668 KEHLRKLDEEKENLQAELTSRSSHLDSSLN-KYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCfqNMVSKEA 746
Cdd:TIGR02168 917 LEELREKLAQLELRLEGLEVRIDNLQERLSeEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPV--NLAAIEE 994
|
730 740 750
....*....|....*....|....*....|.
gi 568957246 747 YEELV-RKS--GNCQDDLTQALEKLTQATSE 774
Cdd:TIGR02168 995 YEELKeRYDflTAQKEDLTEAKETLEEAIEE 1025
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
93-873 |
3.69e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 3.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 93 HLRQLQQLKKKLLTLQQELEFRTQELQAsycsllqyqsilekqtsdllvlhrhcKLKEDEVILYEEEmgnhskstgEKLH 172
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEE--------------------------KLEELRLEVSELE---------EEIE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 173 LAQEQLALAGDKILSLERSLNLYRDKYQTSLSNIELLECQVKMLEGELSgligqdpenkgdhpkvriytspCVIQEHQET 252
Cdd:TIGR02168 285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLD----------------------ELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 253 LKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASytathrhpptssedceditkilkhLQEQKDSQ 332
Cdd:TIGR02168 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ------------------------LELQIASL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 333 CLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLR-EETSCVIEKKDKETVFLQYRLQDLQQQYTESQKLSL 411
Cdd:TIGR02168 399 NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLEEALEELREELEEAEQALD 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 412 KKDKLLQDKDERLHELEKNLMQVQNSLRE-KEAELEKLQCT----------------TKELDTSLQEARQSTSKIDCEAL 474
Cdd:TIGR02168 479 AAERELAQLQARLDSLERLQENLEGFSEGvKALLKNQSGLSgilgvlselisvdegyEAAIEAALGGRLQAVVVENLNAA 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 475 RAEIQKLKDSLEEAR----------EQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKL 544
Cdd:TIGR02168 559 KKAIAFLKQNELGRVtflpldsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELA 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 545 -------------------------------------QKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQ 587
Cdd:TIGR02168 639 kklrpgyrivtldgdlvrpggvitggsaktnssilerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLR 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 588 KTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKE--- 664
Cdd:TIGR02168 719 KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKeel 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 665 KMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAiqkekncfqnmvsK 744
Cdd:TIGR02168 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEL-------------E 865
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 745 EAYEELvrksgncQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEV 824
Cdd:TIGR02168 866 ELIEEL-------ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 568957246 825 HNFDKKLEEmsnqvlQWQRQHQSDLKMLAAKESQLREFQEEMATLRESL 873
Cdd:TIGR02168 939 DNLQERLSE------EYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
382-873 |
4.03e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.89 E-value: 4.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 382 IEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSL----------REKEAELEKLQCT 451
Cdd:TIGR04523 147 IKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLsnlkkkiqknKSLESQISELKKQ 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 452 TKELDTSLQEARQSTSKIDCEALRAE--IQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENclLQDKQ 529
Cdd:TIGR04523 227 NNQLKDNIEKKQQEINEKTTEISNTQtqLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISD--LNNQK 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 530 KEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQ 609
Cdd:TIGR04523 305 EQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQ 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 610 KQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEaKRKEKMAKEHLRKLDEEKENLQAELTSRS 689
Cdd:TIGR04523 385 EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKET-IIKNNSEIKDLTNQDSVKELIIKNLDNTR 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 690 SHLdsslnkynssQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMvskeayeelvrksgncqddlTQALEKLT 769
Cdd:TIGR04523 464 ESL----------ETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEK--------------------KELEEKVK 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 770 QATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKlqgfqQQSEQEVHNFDKKLEEMSNQ---VLQWQRQHQ 846
Cdd:TIGR04523 514 DLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKK-----ENLEKEIDEKNKEIEELKQTqksLKKKQEEKQ 588
|
490 500
....*....|....*....|....*..
gi 568957246 847 SDLKMLAAKESQLREFQEEMATLRESL 873
Cdd:TIGR04523 589 ELIDQKEKEKKDLIKEIEEKEKKISSL 615
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
470-683 |
4.55e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 63.78 E-value: 4.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 470 DCEALRAEIQKLKDS---LEEAREQLKVsdqnLTQSKE--EAHLSASSLEDAHRKIENcLLQDKQKEEVIKDLQSQLHKL 544
Cdd:COG4913 226 AADALVEHFDDLERAheaLEDAREQIEL----LEPIRElaERYAAARERLAELEYLRA-ALRLWFAQRRLELLEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 545 QKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAE-KEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEE 623
Cdd:COG4913 301 RAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEER-------ERRRARLEALLAALGL 373
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 624 ELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQA 683
Cdd:COG4913 374 PLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
418-967 |
4.77e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.01 E-value: 4.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 418 QDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKEldtslQEARQSTskidcEALRAEIQKLKDSLEEAREQLKVSD- 496
Cdd:PTZ00121 1238 DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKA-----EEARKAD-----ELKKAEEKKKADEAKKAEEKKKADEa 1307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 497 QNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRL 576
Cdd:PTZ00121 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA 1387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 577 SNAEKEKSLlQKTLDEDEKKIDELfHSTQVSEQKQREL---TNSIRKLEEelleikglLEEKREQLKKSKEQEKALEEEI 653
Cdd:PTZ00121 1388 EEKKKADEA-KKKAEEDKKKADEL-KKAAAAKKKADEAkkkAEEKKKADE--------AKKKAEEAKKADEAKKKAEEAK 1457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 654 EALRQEAKRKEKMAKEHLRKLDEEK---ENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDsimilqtQLDSA 730
Cdd:PTZ00121 1458 KAEEAKKKAEEAKKADEAKKKAEEAkkaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD-------EAKKA 1530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 731 IQKEKNCFQNMVSKEAYEELVRKSGNCQ--DDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNM 808
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKKADELKKAEELKkaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE 1610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 809 ELKKLQGFQQQSEQEvhnfdKKLEEMSNQVLQWQRQHQSDLKmlaaKESQLREFQEEMATLRESLLADEKEpysppaKLT 888
Cdd:PTZ00121 1611 EAKKAEEAKIKAEEL-----KKAEEEKKKVEQLKKKEAEEKK----KAEELKKAEEENKIKAAEEAKKAEE------DKK 1675
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568957246 889 PKETCRHHRENDQIMNNVEQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLKAG 967
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE 1754
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
396-833 |
7.09e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.12 E-value: 7.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 396 LQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQcttKELDTSLQEARQSTSKIdcEALR 475
Cdd:TIGR04523 323 LEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLK---KENQSYKQEIKNLESQI--NDLE 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 476 AEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEER 555
Cdd:TIGR04523 398 SKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSI 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 556 KHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEK 635
Cdd:TIGR04523 478 NKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSL-------KEKIEKLESEKKEKESKISDLEDELNKD 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 636 REQLKKS--KEQEKALEEEIEALRQE---AKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELN 710
Cdd:TIGR04523 551 DFELKKEnlEKEIDEKNKEIEELKQTqksLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLS 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 711 AEIARQKDSIMILQTQLDS---AIQKEKNCFQNMVSKEayEELVRKSGNcqddltqaLEKLTQATSETKSLNRSLQQTQE 787
Cdd:TIGR04523 631 SIIKNIKSKKNKLKQEVKQikeTIKEIRNKWPEIIKKI--KESKTKIDD--------IIELMKDWLKELSLHYKKYITRM 700
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 568957246 788 RKAQLEDEIaayEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEE 833
Cdd:TIGR04523 701 IRIKDLPKL---EEKYKEIEKELKKLDEFSKELENIIKNFNKKFDD 743
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
144-774 |
1.46e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 1.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 144 RHCKLKEDEVILYEEEMGNHSKSTGEKLHLAQEQLALAGDKILSLERSLNLYRDKYQTSLSNIELLECQVKMLEGELSGL 223
Cdd:COG1196 214 RYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 224 IGQ--DPENKGDHPKVRiytspcvIQEHQETLKRLSEVWQKVSEQDDL----IQELRNKLACSNSLVLEREEALIKLQAE 297
Cdd:COG1196 294 LAElaRLEQDIARLEER-------RRELEERLEELEEELAELEEELEEleeeLEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 298 FASYTATHRhpptssEDCEDITKILKHLQEQKDSQclhvEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREE 377
Cdd:COG1196 367 LLEAEAELA------EAEEELEELAEELLEALRAA----AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 378 TScVIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDT 457
Cdd:COG1196 437 EE-EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 458 SLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDL 537
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARG 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 538 QSQLHKLQKESSKIEEERKhnRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNS 617
Cdd:COG1196 596 AIGAAVDLVASDLREADAR--YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAA 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 618 IRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLN 697
Cdd:COG1196 674 LLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEAL 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 698 KYNSSQKVIQELNAEIARqkdsimiLQTQLDS--AIqkekncfqNMVSKEAYEE-------LVRKsgncQDDLTQALEKL 768
Cdd:COG1196 754 EELPEPPDLEELERELER-------LEREIEAlgPV--------NLLAIEEYEEleerydfLSEQ----REDLEEARETL 814
|
....*.
gi 568957246 769 TQATSE 774
Cdd:COG1196 815 EEAIEE 820
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
490-835 |
1.96e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 61.62 E-value: 1.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 490 EQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEER---KHNRQRLQELS 566
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELeklEKEVKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 567 SELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELtNSIRKLEEELLEIKGLLEEKREQLKKSKEQE 646
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 647 KALEEEIEALRQEAKRKEKMaKEHLRKLDEEKENLQAELtsrsSHLDSSLNKYNSSQKVIQELNAEIARQKD-SIMILQT 725
Cdd:PRK03918 317 SRLEEEINGIEERIKELEEK-EERLEELKKKLKELEKRL----EELEERHELYEEAKAKKEELERLKKRLTGlTPEKLEK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 726 QLDSAIQKEKNCfqnmvsKEAYEELVRKSGNCQD---DLTQALEKLTQATSETKSLNRSLqqTQERKAQLedeIAAYEER 802
Cdd:PRK03918 392 ELEELEKAKEEI------EEEISKITARIGELKKeikELKKAIEELKKAKGKCPVCGREL--TEEHRKEL---LEEYTAE 460
|
330 340 350
....*....|....*....|....*....|...
gi 568957246 803 MKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMS 835
Cdd:PRK03918 461 LKRIEKELKEIEEKERKLRKELRELEKVLKKES 493
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
565-805 |
2.60e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.55 E-value: 2.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 565 LSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKE 644
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAAL-------KKEEKALLKQLAALERRIAALARRIRALEQELAALEA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 645 QEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQ 724
Cdd:COG4942 84 ELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 725 TQLDSAIQKEKNcfqnmvSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMK 804
Cdd:COG4942 164 ALRAELEAERAE------LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
.
gi 568957246 805 K 805
Cdd:COG4942 238 A 238
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
493-669 |
2.64e-09 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 60.95 E-value: 2.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 493 KVSDQNLTQSKEEAhlsASSLEDAHRKIENcllqdkQKEEVIKDLQSQLHKLQKEsskIEEERKHNRQRLQELSSELseg 572
Cdd:PRK12704 27 KIAEAKIKEAEEEA---KRILEEAKKEAEA------IKKEALLEAKEEIHKLRNE---FEKELRERRNELQKLEKRL--- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 573 QRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGL-LEEKREQLKKSKEQEkaLEE 651
Cdd:PRK12704 92 LQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLtAEEAKEILLEKVEEE--ARH 169
|
170
....*....|....*...
gi 568957246 652 EIEALrqeAKRKEKMAKE 669
Cdd:PRK12704 170 EAAVL---IKEIEEEAKE 184
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
527-733 |
1.47e-08 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 58.87 E-value: 1.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 527 DKQKEEVIKDLQSQLHKLQ--KESSKI---EEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELF 601
Cdd:COG3206 181 EEQLPELRKELEEAEAALEefRQKNGLvdlSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 602 HSTQVSEqkqreltnsirkLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRkekMAKEHLRKLDEEKENL 681
Cdd:COG3206 261 QSPVIQQ------------LRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQ---EAQRILASLEAELEAL 325
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 568957246 682 QAELTSrsshLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQK 733
Cdd:COG3206 326 QAREAS----LQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQR 373
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
534-685 |
1.50e-08 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 56.47 E-value: 1.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 534 IKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfHSTQVSEQKQRE 613
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNV-RNNKEYEALQKE 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568957246 614 LTN---SIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAEL 685
Cdd:COG1579 98 IESlkrRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
660-885 |
2.20e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 57.53 E-value: 2.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 660 AKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAiqkekncfq 739
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEER--------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 740 nmvsKEAYEELVR---KSGNCQDDLTQAL--EKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQ 814
Cdd:COG3883 85 ----REELGERARalyRSGGSVSYLDVLLgsESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELE 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568957246 815 GFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPA 885
Cdd:COG3883 161 ALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAA 231
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
245-896 |
2.62e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.21 E-value: 2.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 245 VIQEHQETLKRLsevwqkVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRHPPTSSEDCedITKILKH 324
Cdd:pfam15921 261 LLQQHQDRIEQL------ISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLEST--VSQLRSE 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 325 LQEQKDSQCLHVEEYQ-------NLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDK-------ETV 390
Cdd:pfam15921 333 LREAKRMYEDKIEELEkqlvlanSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwdrdtgNSI 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 391 FLQYRLQDLQQQYTESQKLSLKKDKLlqdKDERLHELEKNLMQVQNslreKEAELEKLQCTTKELDTSLQEARQ-----S 465
Cdd:pfam15921 413 TIDHLRRELDDRNMEVQRLEALLKAM---KSECQGQMERQMAAIQG----KNESLEKVSSLTAQLESTKEMLRKvveelT 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 466 TSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAhrkiencllqdKQKEEVIKDLQSQLHKLQ 545
Cdd:pfam15921 486 AKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHL-----------KNEGDHLRNVQTECEALK 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 546 KESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEEL 625
Cdd:pfam15921 555 LQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEK 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 626 LEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEakrkekmakehLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKV 705
Cdd:pfam15921 635 VKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNE-----------LNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKS 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 706 IQelnAEIARQKDSIMILQTQLDSAIQkekncfqnmVSKEAYEELVRKSGNCqDDLTQALEKLTQATSETkslNRSLQQT 785
Cdd:pfam15921 704 AQ---SELEQTRNTLKSMEGSDGHAMK---------VAMGMQKQITAKRGQI-DALQSKIQFLEEAMTNA---NKEKHFL 767
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 786 QERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQW----QRQHQSDLKMLAAKESQLRE 861
Cdd:pfam15921 768 KEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECqdiiQRQEQESVRLKLQHTLDVKE 847
|
650 660 670
....*....|....*....|....*....|....*
gi 568957246 862 FQEEMATLRESLladekepysPPAKLTPKETCRHH 896
Cdd:pfam15921 848 LQGPGYTSNSSM---------KPRLLQPASFTRTH 873
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
438-814 |
4.00e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.47 E-value: 4.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 438 LREKEAELEKLQCTTKELDTSLQEARQSTSKIdcEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSasSLEDAH 517
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEEL--EELEAELEELREELEKLEKLLQLLPLYQELEALEAELA--ELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 518 RKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERK-HNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKK 596
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 597 IDELFHSTQVSEQKQR----------------------ELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIE 654
Cdd:COG4717 229 LEQLENELEAAALEERlkearlllliaaallallglggSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 655 ALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKE 734
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELR 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 735 KNCFQnmvsKEAYEELVRKSGNCQDDLTQALEKLTQATSETkslnrSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQ 814
Cdd:COG4717 389 AALEQ----AEEYQELKEELEELEEQLEELLGELEELLEAL-----DEEELEEELEELEEELEELEEELEELREELAELE 459
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
420-961 |
4.53e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.34 E-value: 4.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 420 KDERLHELEKNLMQVQNSLREKEAELEKLQCTTKEldtslQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNL 499
Cdd:TIGR04523 31 QDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNK-----DEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 500 TQSKEEahlsassledahrkiencllqdkqkeevIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNA 579
Cdd:TIGR04523 106 SKINSE----------------------------IKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 580 EKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKRE---QLKKSKEQEKALEEEIEAL 656
Cdd:TIGR04523 158 NNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSlesQISELKKQNNQLKDNIEKK 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 657 RQEakrkekmakehLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSImilqTQLDSAIQKEKN 736
Cdd:TIGR04523 238 QQE-----------INEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQL----NQLKSEISDLNN 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 737 CFQNMVSKEAYEELVRKsgncQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGF 816
Cdd:TIGR04523 303 QKEQDWNKELKSELKNQ----EKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 817 QQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTPKETC--R 894
Cdd:TIGR04523 379 NQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIikN 458
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 895 HHRENDQIMNNVEQWAKEQKIANEKLGNK---LREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEE 961
Cdd:TIGR04523 459 LDNTRESLETQLKVLSRSINKIKQNLEQKqkeLKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEK 528
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
560-802 |
5.15e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.23 E-value: 5.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 560 QRLQELSSELSEGQRRLSNAEKEKSLLQKtLDEDEKKIDELFhsTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQL 639
Cdd:COG4913 228 DALVEHFDDLERAHEALEDAREQIELLEP-IRELAERYAAAR--ERLAELEYLRAALRLWFAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 640 KKSKEQEKALEEEIEALRQEAKRkekmAKEHLRKLD-EEKENLQAEltsrsshldsslnkynssqkvIQELNAEIARQKD 718
Cdd:COG4913 305 ARLEAELERLEARLDALREELDE----LEAQIRGNGgDRLEQLERE---------------------IERLERELEERER 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 719 SIMILQTQLDSAiqkeknCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKslnRSLQQTQERKAQLEDEIAA 798
Cdd:COG4913 360 RRARLEALLAAL------GLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAE---AALRDLRRELRELEAEIAS 430
|
....
gi 568957246 799 YEER 802
Cdd:COG4913 431 LERR 434
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
455-690 |
5.20e-08 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 56.96 E-value: 5.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 455 LDTSLQEARQSTSKIDceaLRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVI 534
Cdd:pfam05667 261 LAGTEATSGASRSAQD---LAELLSSFSGSSTTDTGLTKGSRFTHTEKLQFTNEAPAATSSPPTKVETEEELQQQREEEL 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 535 KDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEgqRRLSNAEKEKSLLQKT-----LDEDEKKIDELFHSTQVSEQ 609
Cdd:pfam05667 338 EELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEE--LKEQNEELEKQYKVKKktldlLPDAEENIAKLQALVDASAQ 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 610 KQRELTNSIRKLEEELL-EIKGLLEEKREQLKKSK---EQEKALEEEIEALRQEAKRKEKMAKEhlrkLDEEKENLQAEl 685
Cdd:pfam05667 416 RLVELAGQWEKHRVPLIeEYRALKEAKSNKEDESQrklEEIKELREKIKEVAEEAKQKEELYKQ----LVAEYERLPKD- 490
|
....*
gi 568957246 686 TSRSS 690
Cdd:pfam05667 491 VSRSA 495
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
446-781 |
1.09e-07 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 56.06 E-value: 1.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 446 EKLQCTTKELDTSLQEARQSTSKiDCEALRAEIQKlkdsleeAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIE---- 521
Cdd:PLN02939 71 ENGQLENTSLRTVMELPQKSTSS-DDDHNRASMQR-------DEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQnaek 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 522 NCLLQDKQKEEVIKDLQsqlhklqkessKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELF 601
Cdd:PLN02939 143 NILLLNQARLQALEDLE-----------KILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELL 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 602 HSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKA---LEEE---IEALRQEAKRKEKMAKEHLRKLD 675
Cdd:PLN02939 212 IRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERvfkLEKErslLDASLRELESKFIVAQEDVSKLS 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 676 --------EEKENLQAELTSRSSHLDSS---LNKYNSSQKVIQELNAEIARQKDS------IMILQTQLDSAIQKEKNCF 738
Cdd:PLN02939 292 plqydcwwEKVENLQDLLDRATNQVEKAalvLDQNQDLRDKVDKLEASLKEANVSkfssykVELLQQKLKLLEERLQASD 371
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 568957246 739 QNMVSK-EAYEELVRKsgnCQDDLTQALEKltqatSETKSLNRS 781
Cdd:PLN02939 372 HEIHSYiQLYQESIKE---FQDTLSKLKEE-----SKKRSLEHP 407
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
527-838 |
1.17e-07 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 55.70 E-value: 1.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 527 DKQKEEVIKDLQsQLHKLQKESSKIEEERKHNRqRLQELSSELSEGQRRLSNAEKEKSLLQKTLDE-DEKKIDELfhstq 605
Cdd:PRK05771 15 KSYKDEVLEALH-ELGVVHIEDLKEELSNERLR-KLRSLLTKLSEALDKLRSYLPKLNPLREEKKKvSVKSLEEL----- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 606 vseqkqreltnsIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALrqeakrkekmakEHLRKLDEEKENLQael 685
Cdd:PRK05771 88 ------------IKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERL------------EPWGNFDLDLSLLL--- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 686 tsRSSHLDS-----SLNKYNSSQKVIQELNAEIARQKdsimilqtqldsaiqKEKNCFQNMVSKEAYEELvrksgncqDD 760
Cdd:PRK05771 141 --GFKYVSVfvgtvPEDKLEELKLESDVENVEYISTD---------------KGYVYVVVVVLKELSDEV--------EE 195
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568957246 761 LTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNmelKKLQGFQQQSEQEVHNFDKKLEEMSNQV 838
Cdd:PRK05771 196 ELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELA---KKYLEELLALYEYLEIELERAEALSKFL 270
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
383-879 |
1.67e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 55.50 E-value: 1.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 383 EKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERL-HELEKNLMQVQNSLREKEAELEKLQCTTKELD--TSL 459
Cdd:pfam05483 253 ENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLtKELEDIKMSLQRSMSTQKALEEDLQIATKTICqlTEE 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 460 QEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKE---EVIKD 536
Cdd:pfam05483 333 KEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEvelEELKK 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 537 LQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTN 616
Cdd:pfam05483 413 ILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTA 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 617 SIRKL---------------------EEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLD 675
Cdd:pfam05483 493 HCDKLllenkeltqeasdmtlelkkhQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSE 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 676 EEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQlDSAIQKEKNCFQNMVSKEAYEELVRKSG 755
Cdd:pfam05483 573 ENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKK-GSAENKQLNAYEIKVNKLELELASAKQK 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 756 NCQDDLTQALEKLTQATSETKslnrSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQqqsEQEVHNFDKKLEEMS 835
Cdd:pfam05483 652 FEEIIDNYQKEIEDKKISEEK----LLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALM---EKHKHQYDKIIEERD 724
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 568957246 836 NQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKE 879
Cdd:pfam05483 725 SELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEE 768
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
531-704 |
1.76e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 54.45 E-value: 1.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 531 EEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDE----------- 599
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEErreelgerara 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 600 -------------LFHSTQVSE-----QKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAK 661
Cdd:COG3883 95 lyrsggsvsyldvLLGSESFSDfldrlSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 568957246 662 RKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQK 704
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
311-660 |
2.32e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 2.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 311 SSEDCEDITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscviekkdketv 390
Cdd:TIGR02169 714 ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA------------- 780
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 391 flqyrLQDLQQQYTESQklslkkdkllqdkderlheleknlmqvqnsLREKEAELEKLQCTTKELDTSLQEARQSTSK-- 468
Cdd:TIGR02169 781 -----LNDLEARLSHSR------------------------------IPEIQAELSKLEEEVSRIEARLREIEQKLNRlt 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 469 IDCEALRAEIQKLKDSLEEAREQLKvsdqnltQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKES 548
Cdd:TIGR02169 826 LEKEYLEKEIQELQEQRIDLKEQIK-------SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 549 SKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQReLTNSIRKLE------ 622
Cdd:TIGR02169 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQR-VEEEIRALEpvnmla 977
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 568957246 623 ----EELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEA 660
Cdd:TIGR02169 978 iqeyEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
422-668 |
2.34e-07 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 54.93 E-value: 2.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 422 ERLHELekNLMQVQNSLREKEAEleklqcttkeldtSLQEARqstskidceALRAEIQKLKDSLEEAREQLKVSDqnltq 501
Cdd:PRK05771 23 EALHEL--GVVHIEDLKEELSNE-------------RLRKLR---------SLLTKLSEALDKLRSYLPKLNPLR----- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 502 sKEEAHLSASSLEDAHRKIENCLLQDkqkEEVIKDLQSQLHKLQKESSKIEEERKhNRQRLQELSSELSEGQR------- 574
Cdd:PRK05771 74 -EEKKKVSVKSLEELIKDVEEELEKI---EKEIKELEEEISELENEIKELEQEIE-RLEPWGNFDLDLSLLLGfkyvsvf 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 575 --RLSNAEKEKSLLQK--------------------TLDEDEKKIDELFHSTQVSEQK---QRELTNSIRKLEEELLEIK 629
Cdd:PRK05771 149 vgTVPEDKLEELKLESdvenveyistdkgyvyvvvvVLKELSDEVEEELKKLGFERLEleeEGTPSELIREIKEELEEIE 228
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 568957246 630 GLLEEKREQLKKSKEQE----KALEEEIEALRQEAKRKEKMAK 668
Cdd:PRK05771 229 KERESLLEELKELAKKYleelLALYEYLEIELERAEALSKFLK 271
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
246-656 |
2.51e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.05 E-value: 2.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 246 IQEHQETLKRLSEVWQKVSEQDDLIQE----LRNKLACSNSLVLEREEALIKLQAEFASYTATHRHPPTSSEDCEDItki 321
Cdd:PRK02224 337 AQAHNEEAESLREDADDLEERAEELREeaaeLESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDF--- 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 322 LKHLQEQKDsqclhveEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETS---CVIEKKDKETVFLQYRLQD 398
Cdd:PRK02224 414 LEELREERD-------ELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSphvETIEEDRERVEELEAELED 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 399 LQQQYT------ESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARqstskidce 472
Cdd:PRK02224 487 LEEEVEeveerlERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKR--------- 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 473 alrAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAhlsassleDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIE 552
Cdd:PRK02224 558 ---EAAAEAEEEAEEAREEVAELNSKLAELKERI--------ESLERIRTLLAAIADAEDEIERLREKREALAELNDERR 626
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 553 EERKHNRQRLQELSSELSEGqrRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLl 632
Cdd:PRK02224 627 ERLAEKRERKRELEAEFDEA--RIEEAREDKERAEEYLEQVEEKLDEL-------REERDDLQAEIGAVENELEELEEL- 696
|
410 420
....*....|....*....|....
gi 568957246 633 EEKREQLKKSKEQEKALEEEIEAL 656
Cdd:PRK02224 697 RERREALENRVEALEALYDEAEEL 720
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
469-645 |
3.12e-07 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 54.48 E-value: 3.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 469 IDCEALRAEIQKLKdSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAhrkiencllqdkQKEEVIKDLQSQLHKLQKES 548
Cdd:COG2433 363 VDRDEVKARVIRGL-SIEEALEELIEKELPEEEPEAEREKEHEERELT------------EEEEEIRRLEEQVERLEAEV 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 549 SKIEEERKHNRQRLQELSSELSEGQRR----------LSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNsI 618
Cdd:COG2433 430 EELEAELEEKDERIERLERELSEARSEerreirkdreISRLDREIERLERELEEERERIEEL-------KRKLERLKE-L 501
|
170 180
....*....|....*....|....*....
gi 568957246 619 RKLE--EELLEIKGLLEEKREQLKKSKEQ 645
Cdd:COG2433 502 WKLEhsGELVPVKVVEKFTKEAIRRLEEE 530
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
418-873 |
3.93e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 54.41 E-value: 3.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 418 QDKDERLHELEKNLMQVQNSLREkeaeLEKLQCTTKELDTSLQEARQSTSKIDCEA--LRAEIQKLKDSLEEAREQLKVS 495
Cdd:pfam01576 8 QAKEEELQKVKERQQKAESELKE----LEKKHQQLCEEKNALQEQLQAETELCAEAeeMRARLAARKQELEEILHELESR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 496 -------DQNLTQSKEEAHLSASSLEdAHRKIENCLLQDKQKEEV-----IKDLQSQLHKLQKESSKIEEERKHNRQRLQ 563
Cdd:pfam01576 84 leeeeerSQQLQNEKKKMQQHIQDLE-EQLDEEEAARQKLQLEKVtteakIKKLEEDILLLEDQNSKLSKERKLLEERIS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 564 ELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSK 643
Cdd:pfam01576 163 EFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 644 EQEKALEEEIE---ALRQEAKRKEKMAKEHLRKLDEEKEN--------------LQAELTSRSSHLDSSLNKYNSSQKVI 706
Cdd:pfam01576 243 EELQAALARLEeetAQKNNALKKIRELEAQISELQEDLESeraarnkaekqrrdLGEELEALKTELEDTLDTTAAQQELR 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 707 QELNAEIARQKDSI----MILQTQLDSAIQKEKNCFQNMvsKEAYEELVRKSGNCQ----------DDLTQALEKLTQAT 772
Cdd:pfam01576 323 SKREQEVTELKKALeeetRSHEAQLQEMRQKHTQALEEL--TEQLEQAKRNKANLEkakqalesenAELQAELRTLQQAK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 773 SET----KSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSD 848
Cdd:pfam01576 401 QDSehkrKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEE 480
|
490 500
....*....|....*....|....*
gi 568957246 849 LKMLAAKESQLREFQEEMATLRESL 873
Cdd:pfam01576 481 TRQKLNLSTRLRQLEDERNSLQEQL 505
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
582-723 |
4.17e-07 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 54.09 E-value: 4.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 582 EKSLLQKTLDEDEKKIDELFHS---TQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKskeqekaLEEEIEALRQ 658
Cdd:COG2433 383 EELIEKELPEEEPEAEREKEHEereLTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIER-------LERELSEARS 455
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568957246 659 EAKRKEKMAKEhLRKLDEEKENLQAELtsrsshldsslnkyNSSQKVIQELNAEIARQKDSIMIL 723
Cdd:COG2433 456 EERREIRKDRE-ISRLDREIERLEREL--------------EEERERIEELKRKLERLKELWKLE 505
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
418-657 |
5.92e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 53.76 E-value: 5.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 418 QDKDERLHELEKNLMQVQNSLREKEAELEKLQcttkelDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQ 497
Cdd:PRK11281 76 DRQKEETEQLKQQLAQAPAKLRQAQAELEALK------DDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNS 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 498 NL----TQS-KEEAHLSASSLEDAhrKIENCLLQDKQKEEVIKDlqSQLHKLQKESSKIEEERKHNRQRLQ--ELSSELS 570
Cdd:PRK11281 150 QLvslqTQPeRAQAALYANSQRLQ--QIRNLLKGGKVGGKALRP--SQRVLLQAEQALLNAQNDLQRKSLEgnTQLQDLL 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 571 EGQRRLSNA-----EKEKSLLQ-----KTLDEDEKKIDELfhstQVSEQKQRELTNSI--------RKLEEELLEIKGLL 632
Cdd:PRK11281 226 QKQRDYLTAriqrlEHQLQLLQeainsKRLTLSEKTVQEA----QSQDEAARIQANPLvaqeleinLQLSQRLLKATEKL 301
|
250 260 270
....*....|....*....|....*....|..
gi 568957246 633 EE-------KREQLKKSKEQEKALEEEIEALR 657
Cdd:PRK11281 302 NTltqqnlrVKNWLDRLTQSERNIKEQISVLK 333
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
590-823 |
7.61e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.52 E-value: 7.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 590 LDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKE 669
Cdd:COG3883 18 IQAKQKELSEL-------QAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 670 HLRKLDEEKEN---LQAELTSRSshLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEkncfqnmvskea 746
Cdd:COG3883 91 RARALYRSGGSvsyLDVLLGSES--FSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKL------------ 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568957246 747 yEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQE 823
Cdd:COG3883 157 -AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
541-952 |
7.78e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.23 E-value: 7.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 541 LHKLQKESSKIEEERKHNRQrLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKID--ELFHSTQVSEQKQRELTNSI 618
Cdd:COG4717 70 LKELKELEEELKEAEEKEEE-YAELQEELEELEEELEELEAELEELREELEKLEKLLQllPLYQELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 619 RKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNK 698
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 699 YNS--SQKVIQELNAEIARQKDSIMILQTQL----------------------------DSAIQKEKNCFQNMVSKEAYE 748
Cdd:COG4717 229 LEQleNELEAAALEERLKEARLLLLIAAALLallglggsllsliltiagvlflvlgllaLLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 749 ELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMkklnmelkKLQGFQQQSEQEVHNFD 828
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL--------QLEELEQEIAALLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 829 KKLEEMSNQVLQWQRQHQSDLKMLAAKESQLRE----FQEEMATLRESLLADEKEPYSPPAKLTPKETCRHHRENDQIMN 904
Cdd:COG4717 381 VEDEEELRAALEQAEEYQELKEELEELEEQLEEllgeLEELLEALDEEELEEELEELEEELEELEEELEELREELAELEA 460
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 568957246 905 NVEQWAKEQKIAN-----EKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQEN 952
Cdd:COG4717 461 ELEQLEEDGELAEllqelEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
438-682 |
1.14e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 438 LREKEAELEKLQCTTK-ELDTSLQEARQSTSKIDCEALR-AEIQKLKDSLEEAREQLKVSDQnltQSKEEAHLSASSLED 515
Cdd:PTZ00121 1502 AKKAAEAKKKADEAKKaEEAKKADEAKKAEEAKKADEAKkAEEKKKADELKKAEELKKAEEK---KKAEEAKKAEEDKNM 1578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 516 AHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHN----------RQRLQELSSELSEGQRRLSNAEKE--- 582
Cdd:PTZ00121 1579 ALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKaeelkkaeeeKKKVEQLKKKEAEEKKKAEELKKAeee 1658
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 583 ----KSLLQKTLDEDEKKIDELfhstQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKAlEEEIEALRQ 658
Cdd:PTZ00121 1659 nkikAAEEAKKAEEDKKKAEEA----KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKA-EEENKIKAE 1733
|
250 260
....*....|....*....|....*..
gi 568957246 659 EAKRK---EKMAKEHLRKLDEEKENLQ 682
Cdd:PTZ00121 1734 EAKKEaeeDKKKAEEAKKDEEEKKKIA 1760
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
245-865 |
1.17e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.66 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 245 VIQEHQETLKRLSEVWQKVSEQDDLIQELRNKLA-CSNSLVLEREEALIKLQAEFASYTATHRHPPTSSEDCE-DITKIL 322
Cdd:TIGR00618 234 ALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRArIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEqQAQRIH 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 323 KHLQEQKDSQCLHVEEYQNLVKDlrmelEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQyRLQDLQQQ 402
Cdd:TIGR00618 314 TELQSKMRSRAKLLMKRAAHVKQ-----QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQ-HIHTLQQQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 403 YTESQKLSLKKDKLLQDKDERLHELEKnLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEAlRAEIQKLK 482
Cdd:TIGR00618 388 KTTLTQKLQSLCKELDILQREQATIDT-RTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLE-KIHLQESA 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 483 DSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAH---------------------------RKIENCLLQDKQKEEVIK 535
Cdd:TIGR00618 466 QSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQeepcplcgscihpnparqdidnpgpltRRMQRGEQTYAQLETSEE 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 536 DLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELT 615
Cdd:TIGR00618 546 DVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQ 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 616 NSIRK------LEEELLEIKGLLEEKREQLKKSKEQEKAL-----EEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAE 684
Cdd:TIGR00618 626 DLQDVrlhlqqCSQELALKLTALHALQLTLTQERVREHALsirvlPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTL 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 685 LTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDsAIQKEKNCFQNMVSKEAYEELVRksgncqddLTQA 764
Cdd:TIGR00618 706 LRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELM-HQARTVLKARTEAHFNNNEEVTA--------ALQT 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 765 LEKLTQATSETKSLNRSLQQTQERKAQLEDEIaayEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQ 844
Cdd:TIGR00618 777 GAELSHLAAEIQFFNRLREEDTHLLKTLEAEI---GQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLK 853
|
650 660
....*....|....*....|.
gi 568957246 845 HQSDLKMLAAKESQLREFQEE 865
Cdd:TIGR00618 854 YEECSKQLAQLTQEQAKIIQL 874
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
488-687 |
1.21e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.14 E-value: 1.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 488 AREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSS 567
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 568 ELSEGQRRLSNAEkekSLLQ-KTLDEDekkIDELFHSTQVSEQkQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQE 646
Cdd:COG3883 94 ALYRSGGSVSYLD---VLLGsESFSDF---LDRLSALSKIADA-DADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 568957246 647 KALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTS 687
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAA 207
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
528-882 |
1.71e-06 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 52.39 E-value: 1.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 528 KQKEEVIKDLQSQLHKLQKESSKIEEER----------------KHNRQRLQELSSELSEGQRRLSNAEKEKSLLQK--- 588
Cdd:COG5022 813 RSYLACIIKLQKTIKREKKLRETEEVEFslkaevliqkfgrslkAKKRFSLLKKETIYLQSAQRVELAERQLQELKIdvk 892
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 589 -------TLDEDEKKIDELFHSTQVSEQKQRE-LTNSIRKLEEELLEIKglLEEKREQLKKSKEQEKALEEEIEALRQEA 660
Cdd:COG5022 893 sisslklVNLELESEIIELKKSLSSDLIENLEfKTELIARLKKLLNNID--LEEGPSIEYVKLPELNKLHEVESKLKETS 970
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 661 KRKEKMAKEH------LRKLDEEKENLQAELTSRSSHLDS---SLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAI 731
Cdd:COG5022 971 EEYEDLLKKStilvreGNKANSELKNFKKELAELSKQYGAlqeSTKQLKELPVEVAELQSASKIISSESTELSILKPLQK 1050
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 732 QKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNME-- 809
Cdd:COG5022 1051 LKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLqe 1130
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 810 ----LKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQR--------QHQSDLKMLAAKESQLREFQEEMATLRESLLADE 877
Cdd:COG5022 1131 iskfLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALpspppfaaLSEKRLYQSALYDEKSKLSSSEVNDLKNELIALF 1210
|
....*
gi 568957246 878 KEPYS 882
Cdd:COG5022 1211 SKIFS 1215
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
426-849 |
1.88e-06 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 51.98 E-value: 1.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 426 ELEKNLMQVQNSLREKEAE-LEKLQCTTKELD---TSLQEARQSTSKID-----CEALRAEIQKLKDSLEEAREQLKVSD 496
Cdd:PRK10929 27 QITQELEQAKAAKTPAQAEiVEALQSALNWLEerkGSLERAKQYQQVIDnfpklSAELRQQLNNERDEPRSVPPNMSTDA 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 497 QNltqskEEAHLSASSLEDAHRKIENclLQDKQKEevIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRL 576
Cdd:PRK10929 107 LE-----QEILQVSSQLLEKSRQAQQ--EQDRARE--ISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTA 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 577 SNAEkekSLLQKTldedekKIDELFHStQVSEQKQRELTnsirKLEEElleikgLLEEKREQLKKskeQEKALEEEIEAL 656
Cdd:PRK10929 178 LQAE---SAALKA------LVDELELA-QLSANNRQELA----RLRSE------LAKKRSQQLDA---YLQALRNQLNSQ 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 657 RQeakRKEKMAKEHLRKLDEEKENLQAELTSrsshldsslnKYNSSQKVIQELNAEiARQKDSIMILQTQLDSAIQKekn 736
Cdd:PRK10929 235 RQ---REAERALESTELLAEQSGDLPKSIVA----------QFKINRELSQALNQQ-AQRMDLIASQQRQAASQTLQ--- 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 737 cfqnmvskeayeelVRksgncqddltQALEKLT---QATSETKSLNRSLQQTQER------KAQLEDEIAayEERMKKLN 807
Cdd:PRK10929 298 --------------VR----------QALNTLReqsQWLGVSNALGEALRAQVARlpempkPQQLDTEMA--QLRVQRLR 351
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 568957246 808 MElkKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDL 849
Cdd:PRK10929 352 YE--DLLNKQPQLRQIRQADGQPLTAEQNRILDAQLRTQREL 391
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
418-715 |
2.34e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 2.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 418 QDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQ----STSKIDCEALRAEIQklkdSLEEAREQLK 493
Cdd:COG4913 606 FDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaeySWDEIDVASAEREIA----ELEAELERLD 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 494 VSDQNLTQSKEEAhlsassledahrkiencllqdKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELsselsegQ 573
Cdd:COG4913 682 ASSDDLAALEEQL---------------------EELEAELEELEEELDELKGEIGRLEKELEQAEEELDEL-------Q 733
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 574 RRLSNAEKEKSLLQKTLdedekkIDELFHS---TQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKS-KEQEKAL 649
Cdd:COG4913 734 DRLEAAEDLARLELRAL------LEERFAAalgDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREwPAETADL 807
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568957246 650 EEEIEALRQEAKRKEKMAKEHL-RKLDEEKENLQAELTSRSSHLDSSLNK-YNSSQKVIQELNAEIAR 715
Cdd:COG4913 808 DADLESLPEYLALLDRLEEDGLpEYEERFKELLNENSIEFVADLLSKLRRaIREIKERIDPLNDSLKR 875
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
511-871 |
2.93e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 2.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 511 SSLEDAHRKIENclLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELS---EGQRRLSNAEKEKSLLQ 587
Cdd:PRK02224 187 GSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEeheERREELETLEAEIEDLR 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 588 KTLDEDEKKIDELfhSTQVSEQKQRELT-----------------------NSIRKLEEELLEIKGLLEEKREQLKKSKE 644
Cdd:PRK02224 265 ETIAETEREREEL--AEEVRDLRERLEEleeerddllaeaglddadaeaveARREELEDRDEELRDRLEECRVAAQAHNE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 645 QEKALEEEIEALRQEAKRKEKMAKEhlrkLDEEKENLQAELTSRSSHLDsslnkynssqkviqELNAEIARQKDSIMILQ 724
Cdd:PRK02224 343 EAESLREDADDLEERAEELREEAAE----LESELEEAREAVEDRREEIE--------------ELEEEIEELRERFGDAP 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 725 TQLDSAiqkekncfqnmvskEAYEELVRksgncqDDLTQALEKLTQATSETKSLNRSLQQTQERKAQ---------LEDE 795
Cdd:PRK02224 405 VDLGNA--------------EDFLEELR------EERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpVEGS 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 796 -----IAAYEERMKKLNMELKKLQGfQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLR 870
Cdd:PRK02224 465 phvetIEEDRERVEELEAELEDLEE-EVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELR 543
|
.
gi 568957246 871 E 871
Cdd:PRK02224 544 E 544
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
424-868 |
2.98e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.59 E-value: 2.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 424 LHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKID--------CEALRAEIQKLKDSLEEAREQL--- 492
Cdd:TIGR00606 579 LHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEdklfdvcgSQDEESDLERLKEEIEKSSKQRaml 658
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 493 ----KVSDQNLTQSKEEAH----------LSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHK-----------LQKE 547
Cdd:TIGR00606 659 agatAVYSQFITQLTDENQsccpvcqrvfQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKrrdemlglapgRQSI 738
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 548 SSKIEEERKHNRQRLQELSSELsegQRRLSNAEKEKSLLQkTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLE 627
Cdd:TIGR00606 739 IDLKEKEIPELRNKLQKVNRDI---QRLKNDIEEQETLLG-TIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAK 814
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 628 IKGLLEEKREQLKKSKEQEKALE--------EEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKy 699
Cdd:TIGR00606 815 LQGSDLDRTVQQVNQEKQEKQHEldtvvskiELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVEL- 893
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 700 nssQKVIQELNAEIARQKDSIMILQTQLDSAIQK---------EKNCFQNMVSKEAYEELVRKSGNCQDDLTQALE---- 766
Cdd:TIGR00606 894 ---STEVQSLIREIKDAKEQDSPLETFLEKDQQEkeelisskeTSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDgkdd 970
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 767 KLTQATSETKSLNRSLQQTQERKAQLEDEIAAY---------EERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEM--- 834
Cdd:TIGR00606 971 YLKQKETELNTVNAQLEECEKHQEKINEDMRLMrqdidtqkiQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMqvl 1050
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 568957246 835 ---------SNQVLQWQRQHQSDLKMLAAKESQLREFQEEMAT 868
Cdd:TIGR00606 1051 qmkqehqklEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
528-690 |
4.14e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.21 E-value: 4.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 528 KQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDE----------DEKKI 597
Cdd:COG3883 26 SELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEraralyrsggSVSYL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 598 DELFHSTQVSE------------QKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSK----EQEKALE---EEIEALRQ 658
Cdd:COG3883 106 DVLLGSESFSDfldrlsalskiaDADADLLEELKADKAELEAKKAELEAKLAELEALKaeleAAKAELEaqqAEQEALLA 185
|
170 180 190
....*....|....*....|....*....|..
gi 568957246 659 EAKRKEKMAKEHLRKLDEEKENLQAELTSRSS 690
Cdd:COG3883 186 QLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
594-809 |
5.46e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 5.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 594 EKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKehLRK 673
Cdd:COG4717 52 EKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ--LLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 674 LDEEKENLQAELtsrsSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDsaiqkekncfqnmvskeayEELVRK 753
Cdd:COG4717 130 LYQELEALEAEL----AELPERLEELEERLEELRELEEELEELEAELAELQEELE-------------------ELLEQL 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568957246 754 SGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNME 809
Cdd:COG4717 187 SLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALE 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
758-980 |
5.84e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 5.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 758 QDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKL------ 831
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIaelrae 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 832 -----EEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTPKETCRHHRENDQimNNV 906
Cdd:COG4942 99 leaqkEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER--AEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568957246 907 EQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIE--EKKLKAGNPRICVKAFPPNK 980
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIArlEAEAAAAAERTPAAGFAALK 252
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
336-873 |
6.29e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 6.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 336 VEEYQNLVKDLRMELEAVSE----QKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQYRLQDLQQQYTESQKLSL 411
Cdd:pfam15921 80 LEEYSHQVKDLQRRLNESNElhekQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKC 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 412 KKDKLLQDKDERLHELEKNLMQVQNSLRE--------KEAELEKL------------------QCTTKELDT--SLQEAR 463
Cdd:pfam15921 160 LKEDMLEDSNTQIEQLRKMMLSHEGVLQEirsilvdfEEASGKKIyehdsmstmhfrslgsaiSKILRELDTeiSYLKGR 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 464 QSTSKIDCEALRAE--------IQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKI-ENCLLQDKQKEEVI 534
Cdd:pfam15921 240 IFPVEDQLEALKSEsqnkiellLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIqEQARNQNSMYMRQL 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 535 KDLQSQLHKLQkesSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEK-----------SLLQKTLDEDEKKIDEL-FH 602
Cdd:pfam15921 320 SDLESTVSQLR---SELREAKRMYEDKIEELEKQLVLANSELTEARTERdqfsqesgnldDQLQKLLADLHKREKELsLE 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 603 STQVSEQKQRELTNSI------RKLEEELLEIK---GLLEEKREQLKKSKEQE-KALEEEIEALRQEAKRKEKM--AKEH 670
Cdd:pfam15921 397 KEQNKRLWDRDTGNSItidhlrRELDDRNMEVQrleALLKAMKSECQGQMERQmAAIQGKNESLEKVSSLTAQLesTKEM 476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 671 LRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKdSIMILQTQLDSAIQKEKNCFQNMVSK-EAYEE 749
Cdd:pfam15921 477 LRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLR-SRVDLKLQELQHLKNEGDHLRNVQTEcEALKL 555
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 750 LVRKSGNCQDDLTQALEKLTQATSETkslNRSLQQTQERKAQLEDEIaayeermKKLNMELKKLQGFQQQSEQEVHNFDK 829
Cdd:pfam15921 556 QMAEKDKVIEILRQQIENMTQLVGQH---GRTAGAMQVEKAQLEKEI-------NDRRLELQEFKILKDKKDAKIRELEA 625
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 568957246 830 KLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESL 873
Cdd:pfam15921 626 RVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNEL 669
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
422-873 |
8.50e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 8.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 422 ERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLkvsdQNLTQ 501
Cdd:COG4913 255 EPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREEL----DELEA 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 502 SKEEAhlSASSLEDAHRKIEncllqdkQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELsegQRRLSNAEK 581
Cdd:COG4913 331 QIRGN--GGDRLEQLEREIE-------RLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEA---AALLEALEE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 582 EKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEE----KREQLK--------KSKEQ---- 645
Cdd:COG4913 399 ELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEalglDEAELPfvgelievRPEEErwrg 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 646 --EKAL---------EEE-----IEALRQEAKR--------KEKMAKEHLRKLDEE--------KEN-----LQAELTSR 688
Cdd:COG4913 479 aiERVLggfaltllvPPEhyaaaLRWVNRLHLRgrlvyervRTGLPDPERPRLDPDslagkldfKPHpfrawLEAELGRR 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 689 SSHL--DS--SLNKYN--------------------------------SSQKVIQELNAEIARQKDSIMILQTQLDSAIQ 732
Cdd:COG4913 559 FDYVcvDSpeELRRHPraitragqvkgngtrhekddrrrirsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEA 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 733 KEKNCFQnmvSKEAYEELVRKSGNCQD---------DLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERM 803
Cdd:COG4913 639 ELDALQE---RREALQRLAEYSWDEIDvasaereiaELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEI 715
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568957246 804 KKLNMELKKLQGFQQQSEQEVHNFDKK--------LEEMSNQVLQWQRQHQsdlkMLAAKESQLREFQEEMATLRESL 873
Cdd:COG4913 716 GRLEKELEQAEEELDELQDRLEAAEDLarlelralLEERFAAALGDAVERE----LRENLEERIDALRARLNRAEEEL 789
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
552-874 |
9.09e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 50.05 E-value: 9.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 552 EEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNS---IRKLEEELLEI 628
Cdd:TIGR01612 529 DIDQNIKAKLYKEIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLEIDDEiiyINKLKLELKEK 608
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 629 KGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELtsrSSHLDSSLNK-YNSSQKVIQ 707
Cdd:TIGR01612 609 IKNISDKNEYIKKAIDLKKIIENNNAYIDELAKISPYQVPEHLKNKDKIYSTIKSEL---SKIYEDDIDAlYNELSSIVK 685
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 708 ELNAEIARQKDSIMILQTQLDsaiqKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSE-TKSLNRSLQQTQ 786
Cdd:TIGR01612 686 ENAIDNTEDKAKLDDLKSKID----KEYDKIQNMETATVELHLSNIENKKNELLDIIVEIKKHIHGEiNKDLNKILEDFK 761
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 787 ERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVhNFDKKLEEMSNQVLQWQRQHqsdLKMLAAKESQLREFQEEM 866
Cdd:TIGR01612 762 NKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQI-NIDNIKDEDAKQNYDKSKEY---IKTISIKEDEIFKIINEM 837
|
....*...
gi 568957246 867 ATLRESLL 874
Cdd:TIGR01612 838 KFMKDDFL 845
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
472-790 |
1.13e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 472 EALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEA----HLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKE 547
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKkaleYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 548 SSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLE 627
Cdd:pfam02463 253 IESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKK 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 628 IKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQ 707
Cdd:pfam02463 333 EKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLE 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 708 ELNAEIARQKDSIMILQTQLD---SAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQ 784
Cdd:pfam02463 413 LARQLEDLLKEEKKEELEILEeeeESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSR 492
|
....*.
gi 568957246 785 TQERKA 790
Cdd:pfam02463 493 QKLEER 498
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
422-663 |
1.20e-05 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 49.30 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 422 ERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDT-SLQEARQstskidcEALRAEIQKLKDSlEEAREQLKVSDQNLT 500
Cdd:COG0497 165 RAWRALKKELEELRADEAERARELDLLRFQLEELEAaALQPGEE-------EELEEERRRLSNA-EKLREALQEALEALS 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 501 qskeEAHLSASSLedahrkiencllqdkqkeevIKDLQSQLHKLQKESSKIEEerkhNRQRLQELSSELSEGQRRLSNae 580
Cdd:COG0497 237 ----GGEGGALDL--------------------LGQALRALERLAEYDPSLAE----LAERLESALIELEEAASELRR-- 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 581 kekslLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKL---EEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALR 657
Cdd:COG0497 287 -----YLDSLEFDPERLEEV-------EERLALLRRLARKYgvtVEELLAYAEELRAELAELENSDERLEELEAELAEAE 354
|
....*.
gi 568957246 658 QEAKRK 663
Cdd:COG0497 355 AELLEA 360
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
375-685 |
1.47e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.40 E-value: 1.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 375 REETSCVIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQcttke 454
Cdd:pfam01576 203 RQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQ----- 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 455 LDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKE-EV 533
Cdd:pfam01576 278 EDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHtQA 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 534 IKDLQSQLHKLQKESSKIEEerkhNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLdedEKKIDELFHSTQVSEQKQRE 613
Cdd:pfam01576 358 LEELTEQLEQAKRNKANLEK----AKQALESENAELQAELRTLQQAKQDSEHKRKKL---EGQLQELQARLSESERQRAE 430
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568957246 614 LTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALE---EEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAEL 685
Cdd:pfam01576 431 LAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLEsqlQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQL 505
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
418-669 |
1.51e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 48.67 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 418 QDKDERLHELEKNLMQVQNSLREKEAELEKLQcttKELDTSLQEARQSTSKIDceALRAEIQKLKDSLEEAREQLK---- 493
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELN---EEYNELQAELEALQAEID--KLQAEIAEAEAEIEERREELGerar 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 494 -VSDQNLTQSKEEAHLSASSLEDahrkiencllqdkqkeevikdLQSQLHKLQKESSkieeerkHNRQRLQELSSELSEg 572
Cdd:COG3883 94 aLYRSGGSVSYLDVLLGSESFSD---------------------FLDRLSALSKIAD-------ADADLLEELKADKAE- 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 573 qrrlsnAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEE 652
Cdd:COG3883 145 ------LEAKKAELEAKLAELEALKAEL-------EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
250
....*....|....*..
gi 568957246 653 IEALRQEAKRKEKMAKE 669
Cdd:COG3883 212 AAAAAAAAAAAAAAAAA 228
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
387-966 |
2.34e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 2.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 387 KETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQST 466
Cdd:PTZ00121 1077 KDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEI 1156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 467 SKIDCEALRAEIQKLKDS---LEEAREQLKVSDQNLTQSKEEAHL--SASSLEDAHRKIENCLLQDKQKEEVIKDLQsQL 541
Cdd:PTZ00121 1157 ARKAEDARKAEEARKAEDakkAEAARKAEEVRKAEELRKAEDARKaeAARKAEEERKAEEARKAEDAKKAEAVKKAE-EA 1235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 542 HKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLS-NAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRK 620
Cdd:PTZ00121 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAiKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAK 1315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 621 LEEELLEIKGLLEEKREQLKKSKEQEKALEE----EIEALRQEAKRKEKMAKEHLRKLDEEKENLQA--ELTSRSSHLDS 694
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKAAEaakaEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAakKKAEEKKKADE 1395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 695 SLNKYNSSQKVIQELN--AEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYE--ELVRKSGNCQDDLTQA--LEKL 768
Cdd:PTZ00121 1396 AKKKAEEDKKKADELKkaAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKkaEEAKKAEEAKKKAEEAkkADEA 1475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 769 TQATSETKSLNRSLQQTQERKAQLEDEIAAYEErmKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMsnqvlqwqRQHQSD 848
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA--KKKADEAKKAEEAKKADEAKKAEEAKKADEA--------KKAEEK 1545
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 849 LKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTPKETCRHHRENDQIMNNVEQWAKEQKIANEKLGNKLREQV 928
Cdd:PTZ00121 1546 KKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL 1625
|
570 580 590
....*....|....*....|....*....|....*...
gi 568957246 929 KYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLKA 966
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKA 1663
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
246-931 |
2.47e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.50 E-value: 2.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 246 IQEHQETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKL--QAEFASYTATHRHPPTSSEDCEDITKILK 323
Cdd:TIGR00606 247 LDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVfqGTDEQLNDLYHNHQRTVREKERELVDCQR 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 324 HLQE-QKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHG--------------LREETSCVIEKKDKE 388
Cdd:TIGR00606 327 ELEKlNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLeldgfergpfserqIKNFHTLVIERQEDE 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 389 TVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTK---ELDTSLQEARQS 465
Cdd:TIGR00606 407 AKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDrilELDQELRKAERE 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 466 TSKID----CEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQL 541
Cdd:TIGR00606 487 LSKAEknslTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLL 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 542 ------HKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFhSTQVSEQKQRELT 615
Cdd:TIGR00606 567 gyfpnkKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVC-GSQDEESDLERLK 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 616 NSIRKLEEELLEIKG---LLEEKREQLK--------------KSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEK 678
Cdd:TIGR00606 646 EEIEKSSKQRAMLAGataVYSQFITQLTdenqsccpvcqrvfQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRR 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 679 ENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYEELvrksgncQ 758
Cdd:TIGR00606 726 DEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERF-------Q 798
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 759 DDLTQALEKLTQATSETKSLNRSLQQTQERKaqledEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQV 838
Cdd:TIGR00606 799 MELKDVERKIAQQAAKLQGSDLDRTVQQVNQ-----EKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEK 873
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 839 LQWQRQHQSDLKMLAAKESQLREFQEEMATLResllaDEKEPYSPPAKLTPKEtcrhHRENDQIMNNVEQwakEQKIANE 918
Cdd:TIGR00606 874 LQIGTNLQRRQQFEEQLVELSTEVQSLIREIK-----DAKEQDSPLETFLEKD----QQEKEELISSKET---SNKKAQD 941
|
730
....*....|...
gi 568957246 919 KLgNKLREQVKYI 931
Cdd:TIGR00606 942 KV-NDIKEKVKNI 953
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
396-648 |
2.48e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 396 LQDLQQQYTESQKLSLKkdkllQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEarqstskidcEALR 475
Cdd:COG3206 154 ANALAEAYLEQNLELRR-----EEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEA----------KLLL 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 476 AEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAhrkIENCLLQDKQKEevIKDLQSQLHKLQKESSKIEEER 555
Cdd:COG3206 219 QQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL---LQSPVIQQLRAQ--LAELEAELAELSARYTPNHPDV 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 556 KHNRQRLQELSSEL-SEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLE--EELLEikgLL 632
Cdd:COG3206 294 IALRAQIAALRAQLqQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEvaRELYE---SL 370
|
250
....*....|....*.
gi 568957246 633 EEKREQLKKSKEQEKA 648
Cdd:COG3206 371 LQRLEEARLAEALTVG 386
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
521-827 |
2.99e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 2.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 521 ENCLLQDKQKEEVIKDLQSQLH-KLQKESSKIE-----EERKHNRQRLQELSSELSEGQRRLSNAEKEKSL--LQKTLDE 592
Cdd:COG3206 107 EDPLGEEASREAAIERLRKNLTvEPVKGSNVIEisytsPDPELAAAVANALAEAYLEQNLELRREEARKALefLEEQLPE 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 593 DEKKIDElfhstqvSEQKQREL--TNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEH 670
Cdd:COG3206 187 LRKELEE-------AEAALEEFrqKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 671 LRklDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARqkdsimiLQTQLDSAIQKEKNCFQNMVSKeayeel 750
Cdd:COG3206 260 LQ--SPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAA-------LRAQLQQEAQRILASLEAELEA------ 324
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568957246 751 vrksgncqddLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLnmeLKKLQGFQQQSEQEVHNF 827
Cdd:COG3206 325 ----------LQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESL---LQRLEEARLAEALTVGNV 388
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
436-965 |
3.33e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.04 E-value: 3.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 436 NSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLED 515
Cdd:TIGR00618 161 KSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQ 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 516 AH---RKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELssELSEGQRRLSNAEKEKSLLQKTLDE 592
Cdd:TIGR00618 241 SHaylTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAA--PLAAHIKAVTQIEQQAQRIHTELQS 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 593 DEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQL--KKSKEQEKALEEEIEALRQE---AKRKEKMA 667
Cdd:TIGR00618 319 KMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATsiREISCQQHTLTQHIHTLQQQkttLTQKLQSL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 668 KEHLRKLDEEKENLQAELTSRSS---HLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSK 744
Cdd:TIGR00618 399 CKELDILQREQATIDTRTSAFRDlqgQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTK 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 745 EAYEELVRKSGncqddltQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQgfqqqseQEV 824
Cdd:TIGR00618 479 EQIHLQETRKK-------AVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLE-------TSE 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 825 HNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLR--ESLLADEKEPYSPPAKLTPKETCRHHRENDQI 902
Cdd:TIGR00618 545 EDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQniTVRLQDLTEKLSEAEDMLACEQHALLRKLQPE 624
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568957246 903 MNNVEQWAKEQKIAnEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLK 965
Cdd:TIGR00618 625 QDLQDVRLHLQQCS-QELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQ 686
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
543-729 |
3.43e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 3.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 543 KLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLE 622
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEEL-------EAELEELREELEKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 623 --EELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYN 700
Cdd:COG4717 123 klLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELE 202
|
170 180
....*....|....*....|....*....
gi 568957246 701 SSQKVIQELNAEIARQKDSIMILQTQLDS 729
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEELEQ 231
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
169-716 |
3.61e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 3.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 169 EKLHLAQEQLALAGDKILSLERSLNLYRDKYQTSLSNIELLECQVKMLEGELSGLIGQDPENKgdhpkvriytspcviQE 248
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELE---------------EE 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 249 HQETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRHPptsSEDCEDITKILKHLQEQ 328
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL---EEAEEALLERLERLEEE 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 329 KDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETscvIEKKDKETVFLQYRLQDLQQQYTESQK 408
Cdd:COG1196 423 LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA---ALLEAALAELLEELAEAAARLLLLLEA 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 409 LSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLqcttkeLDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEA 488
Cdd:COG1196 500 EADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAA------LEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGR 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 489 REQLKVSDQNLTQSKEEAHLSASSLEDAH---------------------------RKIENCLLQDKQKEEVIKDLQSQL 541
Cdd:COG1196 574 ATFLPLDKIRARAALAAALARGAIGAAVDlvasdlreadaryyvlgdtllgrtlvaARLEAALRRAVTLAGRLREVTLEG 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 542 HKLQKESSKIEEERKHN----RQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNS 617
Cdd:COG1196 654 EGGSAGGSLTGGSRRELlaalLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 618 IRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEK---MAKEHLRKLDEEKENLQAELTSrsshLDS 694
Cdd:COG1196 734 REELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPvnlLAIEEYEELEERYDFLSEQRED----LEE 809
|
570 580
....*....|....*....|..
gi 568957246 695 SLNKYnssQKVIQELNAEIARQ 716
Cdd:COG1196 810 ARETL---EEAIEEIDRETRER 828
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
169-520 |
3.70e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 3.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 169 EKLHLAQEQLALAGDKILSLERSLNLYRDKYQTSLSNIELLECQVKMLEGELSGLIGQDPENKGDhpkvriytspcvIQE 248
Cdd:TIGR02168 705 KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER------------LEE 772
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 249 HQETLKRLSEVWQKVSEQddlIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRHPPTSSEDC----EDITKILKH 324
Cdd:TIGR02168 773 AEEELAEAEAEIEELEAQ---IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATerrlEDLEEQIEE 849
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 325 LQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDKETVFLQYRLQDLQQQYT 404
Cdd:TIGR02168 850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE----LRELESKRSELRRELEELREKLA 925
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 405 ESQklslkkdkllqdkdERLHELEKNLMQVQNSLREK-EAELEKLQCTTKELDTSLQEARQSTSKidceaLRAEIQKLK- 482
Cdd:TIGR02168 926 QLE--------------LRLEGLEVRIDNLQERLSEEySLTLEEAEALENKIEDDEEEARRRLKR-----LENKIKELGp 986
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 568957246 483 ---DSLEEArEQLKVSDQNLTQSKEEAHLSASSLEDAHRKI 520
Cdd:TIGR02168 987 vnlAAIEEY-EELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
478-689 |
3.71e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 47.70 E-value: 3.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 478 IQKLKDSLEEAREQLKVSDQNL-------TQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKL--QKES 548
Cdd:PHA02562 194 QQQIKTYNKNIEEQRKKNGENIarkqnkyDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIksKIEQ 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 549 SKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvseqkqRELTNSIRKLEEELLEI 628
Cdd:PHA02562 274 FQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDEL-----------EEIMDEFNEQSKKLLEL 342
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568957246 629 KGLLEEKREQLKKSKEQEKALEEEIEALRQE-AKRKEKMAK--EHLRKLDEEKENLQAELTSRS 689
Cdd:PHA02562 343 KNKISTNKQSLITLVDKAKKVKAAIEELQAEfVDNAEELAKlqDELDKIVKTKSELVKEKYHRG 406
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
528-879 |
3.80e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 47.58 E-value: 3.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 528 KQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVS 607
Cdd:pfam07888 48 QAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAH 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 608 EQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKeHLRKLDEEKENLQAELTS 687
Cdd:pfam07888 128 EARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELR-SLSKEFQELRNSLAQRDT 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 688 RSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCfqnmvsKEAYEELVRKSGNCQDDLTQALEK 767
Cdd:pfam07888 207 QVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGL------GEELSSMAAQRDRTQAELHQARLQ 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 768 LTQATSETKSLNRSLQQTQERKAQ----LEDEIAAYEERMKKLNMELKKLQGFQQQseqevhnfdkklEEMSNQVLQWQR 843
Cdd:pfam07888 281 AAQLTLQLADASLALREGRARWAQeretLQQSAEADKDRIEKLSAELQRLEERLQE------------ERMEREKLEVEL 348
|
330 340 350
....*....|....*....|....*....|....*.
gi 568957246 844 QHQSDLKMLAAKESQlREFQEEMATLResLLADEKE 879
Cdd:pfam07888 349 GREKDCNRVQLSESR-RELQELKASLR--VAQKEKE 381
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
320-879 |
3.84e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.91 E-value: 3.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 320 KILKHLQEQKDSQCLHVEeYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscVIEKKDKETVFLQYRLQDL 399
Cdd:pfam12128 242 EFTKLQQEFNTLESAELR-LSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQ---WKEKRDELNGELSAADAAV 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 400 QQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLqcTTKELD-TSLQEARQSTSKIDCEALRAEI 478
Cdd:pfam12128 318 AKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKAL--TGKHQDvTAKYNRRRSKIKEQNNRDIAGI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 479 QKLKDSLEEAREQLKVS----------------DQNLTQSKEEAHLSASSLEDAHRKI------ENCLLQDKQKEEVIKD 536
Cdd:pfam12128 396 KDKLAKIREARDRQLAVaeddlqaleselreqlEAGKLEFNEEEYRLKSRLGELKLRLnqatatPELLLQLENFDERIER 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 537 LQSQLHKLQKESSKIEEER------------KHNR--QRLQELSSELSEGQRRLS------------------------- 577
Cdd:pfam12128 476 AREEQEAANAEVERLQSELrqarkrrdqaseALRQasRRLEERQSALDELELQLFpqagtllhflrkeapdweqsigkvi 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 578 -----------------NAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELT-------NSIRKLEEELLEIKGLLE 633
Cdd:pfam12128 556 spellhrtdldpevwdgSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEealqsarEKQAAAEEQLVQANGELE 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 634 EKREQLKKSKEQEKALEEEIEAL----RQEAKRKEKMAKEHLRKLDEEKENLQAELTS------------RSSHLDSSLN 697
Cdd:pfam12128 636 KASREETFARTALKNARLDLRRLfdekQSEKDKKNKALAERKDSANERLNSLEAQLKQldkkhqawleeqKEQKREARTE 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 698 KYNSSQKVIQELNAEIARQKDSIMILQTQLD---SAIQKEKNcfQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSE 774
Cdd:pfam12128 716 KQAYWQVVEGALDAQLALLKAAIAARRSGAKaelKALETWYK--RDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQE 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 775 TKSLNRSLQQTQERKAQledeiaAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEmsnqvlqwQRQHQSDLKMLAA 854
Cdd:pfam12128 794 VLRYFDWYQETWLQRRP------RLATQLSNIERAISELQQQLARLIADTKLRRAKLEM--------ERKASEKQQVRLS 859
|
650 660
....*....|....*....|....*.
gi 568957246 855 KE-SQLREFQEEMATLRESLLADEKE 879
Cdd:pfam12128 860 ENlRGLRCEMSKLATLKEDANSEQAQ 885
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
423-599 |
4.37e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.07 E-value: 4.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 423 RLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTskidcEALRAEIQKLKDSLEEAREQLKVSDQNLTQS 502
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTEL-----EDLEKEIKRLELEIEEVEARIKKYEEQLGNV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 503 KeeahlSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEgqrRLSNAEKE 582
Cdd:COG1579 86 R-----NNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE---ELAELEAE 157
|
170
....*....|....*..
gi 568957246 583 KSLLQKTLDEDEKKIDE 599
Cdd:COG1579 158 LEELEAEREELAAKIPP 174
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
567-734 |
5.51e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 5.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 567 SELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKK----- 641
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEraral 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 642 ---------------SK-----------------------EQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQA 683
Cdd:COG3883 96 yrsggsvsyldvllgSEsfsdfldrlsalskiadadadllEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEA 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568957246 684 ELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKE 734
Cdd:COG3883 176 QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAA 226
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
418-962 |
6.43e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.35 E-value: 6.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 418 QDKDERLHELEKNLmqvQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLK---DSLEEAREQLKV 494
Cdd:TIGR00606 297 QGTDEQLNDLYHNH---QRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRhqeHIRARDSLIQSL 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 495 SDQNLTQSKEEAHLSASSLEDAHR-KIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQ 573
Cdd:TIGR00606 374 ATRLELDGFERGPFSERQIKNFHTlVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQ 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 574 RRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEI 653
Cdd:TIGR00606 454 EELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTT 533
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 654 EALRQEAKRKEKMAKEHLRKLDEEKENlqaELTSR----------SSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMIL 723
Cdd:TIGR00606 534 RTQMEMLTKDKMDKDEQIRKIKSRHSD---ELTSLlgyfpnkkqlEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHI 610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 724 QTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQ----------ERKAQLE 793
Cdd:TIGR00606 611 NNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTdenqsccpvcQRVFQTE 690
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 794 DEIaayEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESL 873
Cdd:TIGR00606 691 AEL---QEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDI 767
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 874 LADEKEPYSPPAKLTPKETCRHHRENDQ--IMNNVEQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQE 951
Cdd:TIGR00606 768 EEQETLLGTIMPEEESAKVCLTDVTIMErfQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIEL 847
|
570
....*....|.
gi 568957246 952 NKKLKNEIEEK 962
Cdd:TIGR00606 848 NRKLIQDQQEQ 858
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
569-687 |
7.60e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.69 E-value: 7.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 569 LSEGQRRLSNAEKEKSLLQKtlDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKA 648
Cdd:PRK12704 44 LEEAKKEAEAIKKEALLEAK--EEIHKLRNEF-------EKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEK 114
|
90 100 110
....*....|....*....|....*....|....*....
gi 568957246 649 LEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLqAELTS 687
Cdd:PRK12704 115 KEKELEQKQQELEKKEEELEELIEEQLQELERI-SGLTA 152
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
587-713 |
1.16e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 46.36 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 587 QKTLDEDEKKIDELFHStqvSEQKQRELTNSIRKLEEELLEikglLEEKREQLKKSKEQekaLEEEIEALRQEAKRK--- 663
Cdd:PRK00409 508 KKLIGEDKEKLNELIAS---LEELERELEQKAEEAEALLKE----AEKLKEELEEKKEK---LQEEEDKLLEEAEKEaqq 577
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 664 -----EKMAKEHLRKLDEEKENLQA-----ELTSRSSHLDSSLNKYNSSQKVIQELNAEI 713
Cdd:PRK00409 578 aikeaKKEADEIIKELRQLQKGGYAsvkahELIEARKRLNKANEKKEKKKKKQKEKQEEL 637
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
439-892 |
1.21e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 45.97 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 439 REKEAELEKLQCTTKELDTSLQEARQSTSKIDCE--ALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDA 516
Cdd:pfam10174 271 EEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESEllALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDAL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 517 HRKIEncllqdkQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNaekekslLQKTLDEDEKK 596
Cdd:pfam10174 351 RLRLE-------EKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIEN-------LQEQLRDKDKQ 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 597 IDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQlKKSKEQEKAleEEIEALRQEAKR-KEKMakEHLRKLD 675
Cdd:pfam10174 417 LAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQ-REREDRERL--EELESLKKENKDlKEKV--SALQPEL 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 676 EEKENLQAELTSRSSHLDSSLNKYNSSQKviqELNAEIARQKDSIMILQTQLDSAIQKEkncfqnmVSKEAYEELVrksg 755
Cdd:pfam10174 492 TEKESSLIDLKEHASSLASSGLKKDSKLK---SLEIAVEQKKEECSKLENQLKKAHNAE-------EAVRTNPEIN---- 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 756 ncqddltqalekltqatsetkslnrslqqtqERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMS 835
Cdd:pfam10174 558 -------------------------------DRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELE 606
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 568957246 836 NQVLqwqRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTPKET 892
Cdd:pfam10174 607 SLTL---RQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQLEEL 660
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
392-710 |
1.22e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 392 LQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDC 471
Cdd:pfam02463 188 LIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 472 EALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKE---- 547
Cdd:pfam02463 268 AQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKElkel 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 548 ----------SSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNS 617
Cdd:pfam02463 348 eikreaeeeeEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKE 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 618 IRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLN 697
Cdd:pfam02463 428 ELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARS 507
|
330
....*....|...
gi 568957246 698 KYNSSQKVIQELN 710
Cdd:pfam02463 508 GLKVLLALIKDGV 520
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
386-697 |
1.28e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.22 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 386 DKETVFLQY---------RLQDLQQQYTESQKLSLKKDKllqdKDERLHELEKnlmQVQNSLRE----KEAELEKLQCTT 452
Cdd:COG5022 865 KKETIYLQSaqrvelaerQLQELKIDVKSISSLKLVNLE----LESEIIELKK---SLSSDLIEnlefKTELIARLKKLL 937
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 453 KELDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQS-KEEAHLSASSLEDAHRKIENCLLQDKQKE 531
Cdd:COG5022 938 NNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGnKANSELKNFKKELAELSKQYGALQESTKQ 1017
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 532 evIKDLQSQLHKLQKESSKIEEER--KHNRQRLQELSSELSEGQRRLS------NAEKEKSLLQKTLDEDEKKIDELFHS 603
Cdd:COG5022 1018 --LKELPVEVAELQSASKIISSESteLSILKPLQKLKGLLLLENNQLQarykalKLRRENSLLDDKQLYQLESTENLLKT 1095
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 604 TQVSEQK--QRELTNSIRKLE---------EELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLR 672
Cdd:COG5022 1096 INVKDLEvtNRNLVKPANVLQfivaqmiklNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFA 1175
|
330 340
....*....|....*....|....*
gi 568957246 673 KLDEEKENLQAELTSRSSHLDSSLN 697
Cdd:COG5022 1176 ALSEKRLYQSALYDEKSKLSSSEVN 1200
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
433-883 |
1.34e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.06 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 433 QVQNSLrEKEAELEKLQCTTKELDTSLQEARQSTSKIDceALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEA------ 506
Cdd:PRK11281 40 DVQAQL-DALNKQKLLEAEDKLVQQDLEQTLALLDKID--RQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNdeetre 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 507 HLSASSLEDAHRKIENCL--LQDKQKEevIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSEL---SEGQRRLSNAEK 581
Cdd:PRK11281 117 TLSTLSLRQLESRLAQTLdqLQNAQND--LAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLkggKVGGKALRPSQR 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 582 EksLLQKTLDEDEKKID----ELFHSTQVSE--QKQRELTNS-IRKLEEELLEIKGLLEEKReqLKKSKEQEKaleeeiE 654
Cdd:PRK11281 195 V--LLQAEQALLNAQNDlqrkSLEGNTQLQDllQKQRDYLTArIQRLEHQLQLLQEAINSKR--LTLSEKTVQ------E 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 655 ALRQEAKrkekmakehlrkldeekenlqaeltsrsshldsslNKYNSSQKVIQELNAeiarqkdsimilQTQLDsaiqke 734
Cdd:PRK11281 265 AQSQDEA-----------------------------------ARIQANPLVAQELEI------------NLQLS------ 291
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 735 kncfqnmvskeayEELVRKsgncqddlTQALEKLTQATSETKSLNRSLQQTQErkaQLEDEIAAyeermkklnmelkkLQ 814
Cdd:PRK11281 292 -------------QRLLKA--------TEKLNTLTQQNLRVKNWLDRLTQSER---NIKEQISV--------------LK 333
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568957246 815 G--------FQQQseQEVHNfDKKLEEMSNQVLQWqRQHQSDLkmlaakeSQLREFQEEMATLRESLLADEKEPYSP 883
Cdd:PRK11281 334 GslllsrilYQQQ--QALPS-ADLIEGLADRIADL-RLEQFEI-------NQQRDALFQPDAYIDKLEAGHKSEVTD 399
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
340-679 |
1.42e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 340 QNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQD 419
Cdd:pfam02463 652 VSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQ 731
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 420 KDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQK------LKDSLEEAREQLK 493
Cdd:pfam02463 732 DKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKeeklkaQEEELRALEEELK 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 494 VSDQNLTQS-KEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEG 572
Cdd:pfam02463 812 EEAELLEEEqLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESK 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 573 QRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEK----- 647
Cdd:pfam02463 892 EEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLlakee 971
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 568957246 648 -------ALEEEIEALRQEAKRKEKMA------KEHLRKLDEEKE 679
Cdd:pfam02463 972 lgkvnlmAIEEFEEKEERYNKDELEKErleeekKKLIRAIIEETC 1016
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
472-824 |
1.87e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.72 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 472 EALRAEIQKLKDSLEEAREqlkvsDQNLTQSKEEA-------HLS-------ASSLEDAHRKI----------ENCLLQD 527
Cdd:PRK04863 789 EQLRAEREELAERYATLSF-----DVQKLQRLHQAfsrfigsHLAvafeadpEAELRQLNRRRveleraladhESQEQQQ 863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 528 KQKEEVIKDLQSQLHKLQKESSKIEEErkHNRQRLQELSSELSEGQ----------RRLSNAEKEKSLLQktldEDEKKI 597
Cdd:PRK04863 864 RSQLEQAKEGLSALNRLLPRLNLLADE--TLADRVEEIREQLDEAEeakrfvqqhgNALAQLEPIVSVLQ----SDPEQF 937
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 598 DELFHSTQVSEQKQRELTNSIRKLEEelleikglLEEKREQLKKSKEQEKALEEE--IEALRQEAKRKEKMakehLRKLD 675
Cdd:PRK04863 938 EQLKQDYQQAQQTQRDAKQQAFALTE--------VVQRRAHFSYEDAAEMLAKNSdlNEKLRQRLEQAEQE----RTRAR 1005
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 676 EEKENLQAELTsrsshldsslnKYNSsqkviqelnaeiarqkdsimiLQTQLDSAIQkekncfqnmvskeAYEELVrksg 755
Cdd:PRK04863 1006 EQLRQAQAQLA-----------QYNQ---------------------VLASLKSSYD-------------AKRQML---- 1036
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568957246 756 ncqDDLTQALEKLT---------QATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQ-GFQQQSEQEV 824
Cdd:PRK04863 1037 ---QELKQELQDLGvpadsgaeeRARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLErDYHEMREQVV 1112
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
419-823 |
2.65e-04 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 45.05 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 419 DKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEAR--------QSTSKIDCEALRAEIQKLKDSLEEARE 490
Cdd:pfam13166 93 EIQEKIAKLKKEIKDHEEKLDAAEANLQKLDKEKEKLEADFLDECwkkikrkkNSALSEALNGFKYEANFKSRLLREIEK 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 491 QLKVSDQNLTQSKEEAhLSASSLEDAHRKIENCLLQDKQKEEVIKD--LQSqlhKLQKESSKIEEERKHNrqrlqELSSE 568
Cdd:pfam13166 173 DNFNAGVLLSDEDRKA-ALATVFSDNKPEIAPLTFNVIDFDALEKAeiLIQ---KVIGKSSAIEELIKNP-----DLADW 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 569 LSEGQRRLSNAEKEKSLLQKTLDEDEKK-IDELFhstqvseqkQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEK 647
Cdd:pfam13166 244 VEQGLELHKAHLDTCPFCGQPLPAERKAaLEAHF---------DDEFTEFQNRLQKLIEKVESAISSLLAQLPAVSDLAS 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 648 ---ALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLqaeltSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSImilq 724
Cdd:pfam13166 315 llsAFELDVEDIESEAEVLNSQLDGLRRALEAKRKDP-----FKSIELDSVDAKIESINDLVASINELIAKHNEIT---- 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 725 TQLDSAIQKEKNCFQNMVSKEAYEELVrksgNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMK 804
Cdd:pfam13166 386 DNFEEEKNKAKKKLRLHLVEEFKSEID----EYKDKYAGLEKAINSLEKEIKNLEAEIKKLREEIKELEAQLRDHKPGAD 461
|
410 420
....*....|....*....|.
gi 568957246 805 KLNMELKK--LQGFQQQSEQE 823
Cdd:pfam13166 462 EINKLLKAfgFGELELSFNEE 482
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
422-731 |
2.79e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.94 E-value: 2.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 422 ERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQStskIDCEALRA-EIQKLKDSLEEAREQLKVSDQNLT 500
Cdd:COG3096 361 ERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQA---LDVQQTRAiQYQQAVQALEKARALCGLPDLTPE 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 501 QSKEEAHLSASSLEDAHRKiencLLQDKQKEEVIKDLQSQLHK----LQKESSKIEEERKHNR---------------QR 561
Cdd:COG3096 438 NAEDYLAAFRAKEQQATEE----VLELEQKLSVADAARRQFEKayelVCKIAGEVERSQAWQTarellrryrsqqalaQR 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 562 LQELSSELSEGQRRLSNAEKEKSLLQktldedekkidelfhstQVSEQKQRELTNSIrKLEEELLEIKGLLEEKREQLKK 641
Cdd:COG3096 514 LQQLRAQLAELEQRLRQQQNAERLLE-----------------EFCQRIGQQLDAAE-ELEELLAELEAQLEELEEQAAE 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 642 SKEQEKALEEEIEALRQEAKRKEKMAKEhLRKLDEEKENLQAELtsrSSHLDSSLNKYNSSQKVIQELNaEIARQKDSIM 721
Cdd:COG3096 576 AVEQRSELRQQLEQLRARIKELAARAPA-WLAAQDALERLREQS---GEALADSQEVTAAMQQLLERER-EATVERDELA 650
|
330
....*....|
gi 568957246 722 ILQTQLDSAI 731
Cdd:COG3096 651 ARKQALESQI 660
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
256-626 |
3.09e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.63 E-value: 3.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 256 LSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRhppTSSEDCEDITKILKHLQEQKDSQCLH 335
Cdd:TIGR04523 309 NKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENS---EKQRELEEKQNEIEKLKKENQSYKQE 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 336 VEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDK 415
Cdd:TIGR04523 386 IKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE----IERLKETIIKNNSEIKDLTNQDSVKELIIKNLDN 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 416 LLQDKDERLHELEK-------NLMQVQNSLREKEAELEKLQCTTKELDTSLQE--ARQSTSKIDCEALRAEIQKLKDSLE 486
Cdd:TIGR04523 462 TRESLETQLKVLSRsinkikqNLEQKQKELKSKEKELKKLNEEKKELEEKVKDltKKISSLKEKIEKLESEKKEKESKIS 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 487 EAREQLKVSDQNLTQSK------------EEAHLSASSLEDAHRKIENCLlqdKQKEEVIKDLQSQLHKLQKESSKIEEE 554
Cdd:TIGR04523 542 DLEDELNKDDFELKKENlekeideknkeiEELKQTQKSLKKKQEEKQELI---DQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568957246 555 RKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELL 626
Cdd:TIGR04523 619 LEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELS 690
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
342-645 |
3.38e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.65 E-value: 3.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 342 LVKDLRMELEAVSEQKKKIMKDMMKLELDlhglREETSCVIEKKDKetvflQYRLQDLQQQYTESQKLSLKKDKLLQDKD 421
Cdd:TIGR00606 793 IMERFQMELKDVERKIAQQAAKLQGSDLD----RTVQQVNQEKQEK-----QHELDTVVSKIELNRKLIQDQQEQIQHLK 863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 422 ERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKI--DCEALRAEIQKLKDSLEEAREQLKVSDQNL 499
Cdd:TIGR00606 864 SKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDspLETFLEKDQQEKEELISSKETSNKKAQDKV 943
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 500 TQSKEEAHLSASSLEDAHRKI-ENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSN 578
Cdd:TIGR00606 944 NDIKEKVKNIHGYMKDIENKIqDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTL 1023
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568957246 579 AEKEKSLlqKTLDEDEKKIDELFHSTQVSEQKQ--RELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQ 645
Cdd:TIGR00606 1024 RKRENEL--KEVEEELKQHLKEMGQMQVLQMKQehQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKE 1090
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
567-684 |
4.10e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 44.30 E-value: 4.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 567 SELSEGQRRLSNAEKEKSLLQKTLDEDEKKidelfhstqvseqkqreltnSIRKLEEELLEikglLEEKREQLKKSKEQE 646
Cdd:COG0542 411 EELDELERRLEQLEIEKEALKKEQDEASFE--------------------RLAELRDELAE----LEEELEALKARWEAE 466
|
90 100 110
....*....|....*....|....*....|....*...
gi 568957246 647 KALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAE 684
Cdd:COG0542 467 KELIEEIQELKEELEQRYGKIPELEKELAELEEELAEL 504
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
382-582 |
4.17e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 4.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 382 IEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQE 461
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 462 ARQSTSKID--------------CEALRAEI---QKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENcl 524
Cdd:COG3883 98 SGGSVSYLDvllgsesfsdfldrLSALSKIAdadADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEA-- 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568957246 525 lQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKE 582
Cdd:COG3883 176 -QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
446-719 |
4.40e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.74 E-value: 4.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 446 EKLQCTTKELDTSLQEARQSTSKIdcEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLL 525
Cdd:COG4372 31 EQLRKALFELDKLQEELEQLREEL--EQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 526 QDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQ 605
Cdd:COG4372 109 EAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDEL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 606 VSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAEL 685
Cdd:COG4372 189 LKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAIL 268
|
250 260 270
....*....|....*....|....*....|....
gi 568957246 686 TSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDS 719
Cdd:COG4372 269 VEKDTEEEELEIAALELEALEEAALELKLLALLL 302
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
543-871 |
4.50e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.56 E-value: 4.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 543 KLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSnaekeksllqkTLDEDEKKIDELFHSTQVSEQKQRELT---NSIR 619
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAES-----------DLEQDYQAASDHLNLVQTALRQQEKIEryqADLE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 620 KLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALR--------------------QEAKRKEKMAKE-------HLR 672
Cdd:PRK04863 359 ELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKsqladyqqaldvqqtraiqyQQAVQALERAKQlcglpdlTAD 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 673 KLDEEKENLQAELTSRSSHLDSSLNKYNSSQkviqelnaEIARQKDSIMILQTQLDSAIQKE--KNCFQNMVskEAYEEL 750
Cdd:PRK04863 439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQ--------AAHSQFEQAYQLVRKIAGEVSRSeaWDVARELL--RRLREQ 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 751 VRKSGNCQdDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQgfQQQSEqevhnfdkk 830
Cdd:PRK04863 509 RHLAEQLQ-QLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLS--ESVSE--------- 576
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 568957246 831 LEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRE 871
Cdd:PRK04863 577 ARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLRE 617
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
513-965 |
5.02e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 5.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 513 LEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDE 592
Cdd:TIGR04523 49 LKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNK 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 593 DEKKIDElfhstqvSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAK--RKEKMAKEH 670
Cdd:TIGR04523 129 LEKQKKE-------NKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDkiKNKLLKLEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 671 LRKLDEEKENLQAELTSRSSHLDsslNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEA-YEE 749
Cdd:TIGR04523 202 LLSNLKKKIQKNKSLESQISELK---KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKeLEQ 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 750 LVRKSGNCQDDLTQALEKLTQATSE-----TKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEV 824
Cdd:TIGR04523 279 NNKKIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESEN 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 825 HNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLrefqeematlreslladekepysppakltpketcrhhrendqimN 904
Cdd:TIGR04523 359 SEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQI--------------------------------------------N 394
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568957246 905 NVEQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLK 965
Cdd:TIGR04523 395 DLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELI 455
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
532-846 |
5.81e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.35 E-value: 5.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 532 EVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDElfhstqvSEQKQ 611
Cdd:COG4372 24 ILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQA-------AQAEL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 612 RELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSH 691
Cdd:COG4372 97 AQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQAL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 692 LDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQA 771
Cdd:COG4372 177 SEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVI 256
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568957246 772 TSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQ 846
Cdd:COG4372 257 LKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELA 331
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
524-682 |
5.82e-04 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 43.84 E-value: 5.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 524 LLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHS 603
Cdd:pfam05262 177 ISDKKVVEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 604 TQVSEQKQReltNSIRKLEEELLEIKGLLEEKREQ--LKKSKEQEKALEEEIEALRQEAKRKEKMAK----EHLRKLDEE 677
Cdd:pfam05262 257 AKNLPKPAD---TSSPKEDKQVAENQKREIEKAQIeiKKNDEEALKAKDHKAFDLKQESKASEKEAEdkelEAQKKREPV 333
|
....*
gi 568957246 678 KENLQ 682
Cdd:pfam05262 334 AEDLQ 338
|
|
| PRK00106 |
PRK00106 |
ribonuclease Y; |
480-671 |
6.44e-04 |
|
ribonuclease Y;
Pssm-ID: 178867 [Multi-domain] Cd Length: 535 Bit Score: 43.70 E-value: 6.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 480 KLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSL-EDAHRKiencllQDKQKEEVIKDLQSQLHKLQKEsskIEEERKHN 558
Cdd:PRK00106 25 KMKSAKEAAELTLLNAEQEAVNLRGKAERDAEHIkKTAKRE------SKALKKELLLEAKEEARKYREE---IEQEFKSE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 559 RQRLQELSSELSEGQRRLsnaekeksllqktldedEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQ 638
Cdd:PRK00106 96 RQELKQIESRLTERATSL-----------------DRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAE 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568957246 639 LKKS-------------KEQEKALEEEI-----EALRQEAKRKEKMAKEHL 671
Cdd:PRK00106 159 LERVaalsqaeareiilAETENKLTHEIatrirEAEREVKDRSDKMAKDLL 209
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
744-879 |
6.74e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 6.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 744 KEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQ----- 818
Cdd:COG4717 52 EKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQllply 131
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568957246 819 ----QSEQEVHNFDKKLEEMSNQVLQWQRQHQSdlkmLAAKESQLREFQEEMATLRESLLADEKE 879
Cdd:COG4717 132 qeleALEAELAELPERLEELEERLEELRELEEE----LEELEAELAELQEELEELLEQLSLATEE 192
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
552-890 |
7.76e-04 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 43.32 E-value: 7.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 552 EEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTldedekkiDELFHSTQVSEQKQRELTNSIRKLEEELLEikgl 631
Cdd:pfam02029 10 ERRRRAREERRRQKEEEEPSGQVTESVEPNEHNSYEED--------SELKPSGQGGLDEEEAFLDRTAKREERRQK---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 632 leEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHL---RKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQE 708
Cdd:pfam02029 78 --RLQEALERQKEFDPTIADEKESVAERKENNEEEENSSWekeEKRDSRLGRYKEEETEIREKEYQENKWSTEVRQAEEE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 709 LNAEIARQKDSIMI-LQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQE 787
Cdd:pfam02029 156 GEEEEDKSEEAEEVpTENFAKEEVKDEKIKKEKKVKYESKVFLDQKRGHPEVKSQNGEEEVTKLKVTTKRRQGGLSQSQE 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 788 RK----AQLEDEIAAYEERMK---KLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQH-QSDLKMLAAKESQL 859
Cdd:pfam02029 236 REeeaeVFLEAEQKLEELRRRrqeKESEEFEKLRQKQQEAELELEELKKKREERRKLLEEEEQRRkQEEAERKLREEEEK 315
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 568957246 860 REFQEEMATLR-----------ESLLADEKEPYSPpakLTPK 890
Cdd:pfam02029 316 RRMKEEIERRRaeaaekrqklpEDSSSEGKKPFKC---FSPK 354
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
472-961 |
8.53e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.29 E-value: 8.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 472 EALRAEIQKLKDSLEEAREQLKVSDQNLTQskeeahlsassledahrkiencllqdkqkeevikdLQSQLHKLQKESSKI 551
Cdd:pfam12128 600 EELRERLDKAEEALQSAREKQAAAEEQLVQ-----------------------------------ANGELEKASREETFA 644
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 552 EEERKHNRQRLQELSSELSEGQRRLSNA-EKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQREltnsirkleeelleikG 630
Cdd:pfam12128 645 RTALKNARLDLRRLFDEKQSEKDKKNKAlAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKE----------------Q 708
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 631 LLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENlqaeltsrsshldsSLNKYNSSQKVIQELN 710
Cdd:pfam12128 709 KREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKR--------------DLASLGVDPDVIAKLK 774
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 711 AEIArqkdsimilqtqldSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDD-LTQALEKLTQATSETK-SLNRSLQQTQER 788
Cdd:pfam12128 775 REIR--------------TLERKIERIAVRRQEVLRYFDWYQETWLQRRPrLATQLSNIERAISELQqQLARLIADTKLR 840
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 789 KAQLEDEIAAYEERMKKLNMELKKLQGFQQ-----QSEQEVHNFDKKLEEMSNQVLQWQRQHQSdlkMLAAKESQLREFQ 863
Cdd:pfam12128 841 RAKLEMERKASEKQQVRLSENLRGLRCEMSklatlKEDANSEQAQGSIGERLAQLEDLKLKRDY---LSESVKKYVEHFK 917
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 864 EEMATLRESLLADEKEPYSPPAKLTPKETCRHHRENdQIMNNVEQWAK---EQKIaneklgNKLREQVKYIAK-LTGEKD 939
Cdd:pfam12128 918 NVIADHSGSGLAETWESLREEDHYQNDKGIRLLDYR-KLVPYLEQWFDvrvPQSI------MVLREQVSILGVdLTEFYD 990
|
490 500
....*....|....*....|..
gi 568957246 940 HLHNVMVHLQQENKKLKNEIEE 961
Cdd:pfam12128 991 VLADFDRRIASFSRELQREVGE 1012
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
620-753 |
8.54e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 8.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 620 KLEEELLEIKGLLEE-KREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLdeEKENLQAEltsrsSHLDSSLNK 698
Cdd:PRK12704 32 KIKEAEEEAKRILEEaKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKL--EKRLLQKE-----ENLDRKLEL 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 568957246 699 YNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQ---NMVSKEAYEELVRK 753
Cdd:PRK12704 105 LEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELErisGLTAEEAKEILLEK 162
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
526-651 |
9.29e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.28 E-value: 9.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 526 QDKQK-EEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRR----LSNAEKEkslLQKTLDEDEKKIDEL 600
Cdd:PRK00409 513 EDKEKlNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEedklLEEAEKE---AQQAIKEAKKEADEI 589
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 568957246 601 FHSTQVSEQKQRELTNSiRKLEEELLEIKGLLEEKREQLKKSKEQEKALEE 651
Cdd:PRK00409 590 IKELRQLQKGGYASVKA-HELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
250-861 |
9.69e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 9.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 250 QETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYtathrhpptsSEDCEDITKILKHLQEQK 329
Cdd:pfam01576 415 QELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSL----------ESQLQDTQELLQEETRQK 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 330 DSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLR---EETSCVIEKKDKETVFLQYRLQDLQQQYTES 406
Cdd:pfam01576 485 LNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKkklEEDAGTLEALEEGKKRLQRELEALTQQLEEK 564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 407 QKLSLKKDKLLqdkdERLHELEKNLMQVQNSLREKEAELEKLQcttKELDTSLQEARQSTSKIDCEALRAE--------- 477
Cdd:pfam01576 565 AAAYDKLEKTK----NRLQQELDDLLVDLDHQRQLVSNLEKKQ---KKFDQMLAEEKAISARYAEERDRAEaeareketr 637
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 478 ----------IQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIencllqdkqkEEVIKDLQSQLHKLQKE 547
Cdd:pfam01576 638 alslaraleeALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRAL----------EQQVEEMKTQLEELEDE 707
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 548 SSKIEEERKHNRQRLQELSSELS-EGQRRLSNAEKEKSLLQKTLDEDEKKIDElfhstqvsEQKQRELTNSIRK-LEEEL 625
Cdd:pfam01576 708 LQATEDAKLRLEVNMQALKAQFErDLQARDEQGEEKRRQLVKQVRELEAELED--------ERKQRAQAVAAKKkLELDL 779
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 626 LEIKGLL-------EEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLdeekENLQAELTSRSSHLDSSLNK 698
Cdd:pfam01576 780 KELEAQIdaankgrEEAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKL----KNLEAELLQLQEDLAASERA 855
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 699 YNSSQKVIQELNAEIARQKDSimilqtqlDSAIQKEKNCFQNMVSkEAYEELVRKSGNCQddltQALEKLTQATSETKSL 778
Cdd:pfam01576 856 RRQAQQERDELADEIASGASG--------KSALQDEKRRLEARIA-QLEEELEEEQSNTE----LLNDRLRKSTLQVEQL 922
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 779 NRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQG-FQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKES 857
Cdd:pfam01576 923 TTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGtVKSKFKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEK 1002
|
....
gi 568957246 858 QLRE 861
Cdd:pfam01576 1003 KLKE 1006
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
529-717 |
1.00e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 529 QKEEVIKDLQSQLHKLQKEsskiEEERKHNRQRLQELSSELSEGQR--RLSNAEKEKSLLQKTLDEDEKKIDELFHSTQV 606
Cdd:pfam17380 338 EQERMAMERERELERIRQE----ERKRELERIRQEEIAMEISRMREleRLQMERQQKNERVRQELEAARKVKILEEERQR 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 607 SEQKQRELTNSIRKLEEEL--LEIKGLLEEKREQLKKSKEQEKALEEEIEALRQ-EAKRKEK---MAKEHLRKLDEEKEN 680
Cdd:pfam17380 414 KIQQQKVEMEQIRAEQEEArqREVRRLEEERAREMERVRLEEQERQQQVERLRQqEEERKRKkleLEKEKRDRKRAEEQR 493
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 568957246 681 ---LQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQK 717
Cdd:pfam17380 494 rkiLEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEE 533
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
251-677 |
1.11e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 251 ETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRHPPTSSEDcEDITKILKHLQEQKD 330
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQEL-EALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 331 SQCLHVEEYQNLVKDLRMELEAVSEqkkkimkdmmkLELDLHGLREETSCVIEKKDKEtvfLQYRLQDLQQQYTESQKLS 410
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAE-----------LQEELEELLEQLSLATEEELQD---LAEELEELQQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 411 LKKDKLLQDKDERLHELEKNLM--QVQNSLREKE---------AELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQ 479
Cdd:COG4717 216 EEAQEELEELEEELEQLENELEaaALEERLKEARlllliaaalLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 480 KLKDSLEEARE-QLKVSDQNLTQSKEEAHLSASSLEDAHRKIEncLLQDKQKEEVIKDLQSQLHKLQKESsKIEEERKHN 558
Cdd:COG4717 296 EKASLGKEAEElQALPALEELEEEELEELLAALGLPPDLSPEE--LLELLDRIEELQELLREAEELEEEL-QLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 559 RQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFhstqvSEQKQRELTNSIRKLEEELLEIKGLLEEKREQ 638
Cdd:COG4717 373 AALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELL-----GELEELLEALDEEELEEELEELEEELEELEEE 447
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 568957246 639 LKKSKEQEKALEEEIEALR-----QEAKRKEKMAKEHLRKLDEE 677
Cdd:COG4717 448 LEELREELAELEAELEQLEedgelAELLQELEELKAELRELAEE 491
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
474-642 |
1.15e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 474 LRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEahlsassLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKL--QKESSKI 551
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTE-------LEDLEKEIKRLELEIEEVEARIKKYEEQLGNVrnNKEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 552 EEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDElfhstqvseqKQRELTNSIRKLEEELLEikgl 631
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEE----------KKAELDEELAELEAELEE---- 160
|
170
....*....|.
gi 568957246 632 LEEKREQLKKS 642
Cdd:COG1579 161 LEAEREELAAK 171
|
|
| FapA |
pfam03961 |
Flagellar Assembly Protein A beta solenoid domain; This entry represents the C-terminal beta ... |
609-691 |
1.18e-03 |
|
Flagellar Assembly Protein A beta solenoid domain; This entry represents the C-terminal beta solenoid domain of FapA and its homologs. Members of this family include FapA (flagellar assembly protein A) found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction. This entry shows similarity to pfam03775 suggesting a similar functional role.
Pssm-ID: 461111 [Multi-domain] Cd Length: 272 Bit Score: 41.90 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 609 QKQRELTNSIRKLEEELLEIKGLLEekreqlKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSR 688
Cdd:pfam03961 156 EKLEELEKELEELEEELEKLKKRLK------KLPKKARGQLPPEKREQLEKLLETKNKLSEELEELEEELKELKEELESL 229
|
...
gi 568957246 689 SSH 691
Cdd:pfam03961 230 LGE 232
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
422-796 |
1.20e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.02 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 422 ERLHELEKNLMQVQNSLREKEA-------ELEKLQCTTKELDTSLQEAR----------QSTSKIdcEALRAEIQKLKDS 484
Cdd:COG3096 285 ERALELRRELFGARRQLAEEQYrlvemarELEELSARESDLEQDYQAASdhlnlvqtalRQQEKI--ERYQEDLEELTER 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 485 LEEAREQLKVSDQNLTQSKEEAHLS-------ASSLEDAHRKIE---NCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEE 554
Cdd:COG3096 363 LEEQEEVVEEAAEQLAEAEARLEAAeeevdslKSQLADYQQALDvqqTRAIQYQQAVQALEKARALCGLPDLTPENAEDY 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 555 RKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhSTQVSEQKQRELTN---SIRKLEEELLEIKGL 631
Cdd:COG3096 443 LAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEV--ERSQAWQTARELLRryrSQQALAQRLQQLRAQ 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 632 LEEKREQLkkskEQEKALEEEIEALRQEAKRKEKMAKEhlrkLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNA 711
Cdd:COG3096 521 LAELEQRL----RQQQNAERLLEEFCQRIGQQLDAAEE----LEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRA 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 712 EIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAyeelvrksgnCQDDLTQALEKLTQATSETkslnrslQQTQERKAQ 791
Cdd:COG3096 593 RIKELAARAPAWLAAQDALERLREQSGEALADSQE----------VTAAMQQLLEREREATVER-------DELAARKQA 655
|
....*
gi 568957246 792 LEDEI 796
Cdd:COG3096 656 LESQI 660
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
528-798 |
1.38e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 42.73 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 528 KQKEEVIKDLQSQLhklQKESSK-------IEEERKHNRQRLQELSSELSE-GQRRLSNAEKEKSllQKTLDEDEKKIDE 599
Cdd:PTZ00108 995 KRKEYLLGKLEREL---ARLSNKvrfikhvINGELVITNAKKKDLVKELKKlGYVRFKDIIKKKS--EKITAEEEEGAEE 1069
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 600 LFHSTQVSEQKQRE---------------LTN-SIRKLEEELLEIKGLLEEKR---------EQLKKSKEQEKALEEEIE 654
Cdd:PTZ00108 1070 DDEADDEDDEEELGaavsydyllsmpiwsLTKeKVEKLNAELEKKEKELEKLKnttpkdmwlEDLDKFEEALEEQEEVEE 1149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 655 ALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKY----NSSQKVIQELNAEIARQKDSIMILQTQLDSA 730
Cdd:PTZ00108 1150 KEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVvgnsKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDE 1229
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568957246 731 IQKEKNCFQNMV---SKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAA 798
Cdd:PTZ00108 1230 EQKTKPKKSSVKrlkSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGS 1300
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
575-963 |
1.41e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 575 RLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIE 654
Cdd:TIGR04523 34 EEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIK 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 655 ALRQEAKRKE---KMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAI 731
Cdd:TIGR04523 114 NDKEQKNKLEvelNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 732 QKEKNCFQNMVSKEAYEELVRKsgncqddltqALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELK 811
Cdd:TIGR04523 194 NKLLKLELLLSNLKKKIQKNKS----------LESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQN 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 812 KLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQ-----HQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAK 886
Cdd:TIGR04523 264 KIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEisdlnNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQ 343
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568957246 887 LTPKETCRHHRENDQIMNNVEQWAKEQKIanEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKK 963
Cdd:TIGR04523 344 ISQLKKELTNSESENSEKQRELEEKQNEI--EKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQ 418
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
322-704 |
1.49e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 322 LKHLQEQKDSQCLHVEEYQNLVKDLRM--ELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQYrlqdl 399
Cdd:PTZ00121 1527 AKKAEEAKKADEAKKAEEKKKADELKKaeELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLY----- 1601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 400 qQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEiq 479
Cdd:PTZ00121 1602 -EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE-- 1678
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 480 KLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAhRKIEncllQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNR 559
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK-KKAE----ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE 1753
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 560 QRLQELSSELSEGQRRLSNAEKEKSLL---------QKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEE-ELLEIK 629
Cdd:PTZ00121 1754 EEKKKIAHLKKEEEKKAEEIRKEKEAVieeeldeedEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEmEDSAIK 1833
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568957246 630 GLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQK 704
Cdd:PTZ00121 1834 EVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMA 1908
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
527-674 |
1.59e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.39 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 527 DKQKEEVIKDLQSQLHKLQKESSK-IEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEkkiDELFHSTQ 605
Cdd:PRK12705 36 ERILQEAQKEAEEKLEAALLEAKElLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLE---NQLEEREK 112
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 606 VSEQKQRELTNSIRKLEEELLEIKGLL-EEKREQLKKSKEQEkaLEEEIEalrQEAKRKEKMAKEHLRKL 674
Cdd:PRK12705 113 ALSARELELEELEKQLDNELYRVAGLTpEQARKLLLKLLDAE--LEEEKA---QRVKKIEEEADLEAERK 177
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
603-879 |
1.59e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 41.82 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 603 STQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQ 682
Cdd:COG1340 2 KTDELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 683 aELTSRSSHLDSSLNKYNSSQKVIQELNAEIArqkdsimilqtQLDSAIQKEKNCFQNMV-SKEAYEELVRKSgncqDDL 761
Cdd:COG1340 82 -ELNEKLNELREELDELRKELAELNKAGGSID-----------KLRKEIERLEWRQQTEVlSPEEEKELVEKI----KEL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 762 TQALEKLTQATSETKSLNRSLQQTQERKAQLEDeiaaYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQW 841
Cdd:COG1340 146 EKELEKAKKALEKNEKLKELRAELKELRKEAEE----IHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEA 221
|
250 260 270
....*....|....*....|....*....|....*...
gi 568957246 842 QRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKE 879
Cdd:COG1340 222 QEKADELHEEIIELQKELRELRKELKKLRKKQRALKRE 259
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
486-828 |
1.73e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 42.25 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 486 EEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQD-KQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRlQE 564
Cdd:COG5185 228 IINIEEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKlGENAESSKRLNENANNLIKQFENTKEKIAEYTKS-ID 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 565 LSSELSEGQRRLSNAEKEKSLLQKTLdEDEKKIDELFHSTqvsEQKQRELTNSIRKLEEELLEIKGL--LEEKREQLKKS 642
Cdd:COG5185 307 IKKATESLEEQLAAAEAEQELEESKR-ETETGIQNLTAEI---EQGQESLTENLEAIKEEIENIVGEveLSKSSEELDSF 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 643 KEQEKALEEEIEALRQEAKRKEKMAKEHLRK----LDEEKENLQAELtsrsshlDSSLNKYNSSQKVIQELNAEIARQKD 718
Cdd:COG5185 383 KDTIESTKESLDEIPQNQRGYAQEILATLEDtlkaADRQIEELQRQI-------EQATSSNEEVSKLLNELISELNKVMR 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 719 SIMilqtqldsaiqkekncfqnmvskeayeelvrksGNCQDDLTQALEKLTQATSETK-SLNRSLQQTQERKAQLEDEIA 797
Cdd:COG5185 456 EAD---------------------------------EESQSRLEEAYDEINRSVRSKKeDLNEELTQIESRVSTLKATLE 502
|
330 340 350
....*....|....*....|....*....|.
gi 568957246 798 AYEERMKklnmelKKLQGFQQQSEQEVHNFD 828
Cdd:COG5185 503 KLRAKLE------RQLEGVRSKLDQVAESLK 527
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
530-668 |
2.09e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.49 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 530 KEEVIKDLQSQLHKLqkeSSKIEEERKHNrqrlQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhSTQVSEq 609
Cdd:PRK09039 51 KDSALDRLNSQIAEL---ADLLSLERQGN----QDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAA--EGRAGE- 120
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568957246 610 kqreltnsirkLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQ-----EAKRKEKMAK 668
Cdd:PRK09039 121 -----------LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAaldasEKRDRESQAK 173
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
527-873 |
2.16e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 41.87 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 527 DKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQV 606
Cdd:COG5185 168 LTQELNQNLKKLEIFGLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKGFQDPESELED 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 607 SEQKQRELTNSIRKLEEELLEIkglLEEKREQLKKSKEQEKALEEEIEALRQEAKrkEKMAKEHLRKLDEEKENLQAELT 686
Cdd:COG5185 248 LAQTSDKLEKLVEQNTDLRLEK---LGENAESSKRLNENANNLIKQFENTKEKIA--EYTKSIDIKKATESLEEQLAAAE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 687 SRSSHLDSSLnkynssqkviqELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALE 766
Cdd:COG5185 323 AEQELEESKR-----------ETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSSEELDSFKDTIESTKE 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 767 KLTQATSETKslnrslQQTQERKAQLEDEIAAYEERMKKLNMELKKL-------QGFQQQSEQEVHNFDKKLEEMSNQVL 839
Cdd:COG5185 392 SLDEIPQNQR------GYAQEILATLEDTLKAADRQIEELQRQIEQAtssneevSKLLNELISELNKVMREADEESQSRL 465
|
330 340 350
....*....|....*....|....*....|....*.
gi 568957246 840 QWQRQH--QSDLKMLAAKESQLREFQEEMATLRESL 873
Cdd:COG5185 466 EEAYDEinRSVRSKKEDLNEELTQIESRVSTLKATL 501
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
325-873 |
2.52e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.81 E-value: 2.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 325 LQEQKDSQCLHVEEYQNLVKDLR---MELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKD--KETVFLQYRLQDL 399
Cdd:PRK01156 171 LKDVIDMLRAEISNIDYLEEKLKssnLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNnlKSALNELSSLEDM 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 400 QQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKEldtSLQEARQSTSKIDcealrAEIQ 479
Cdd:PRK01156 251 KNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKN---DIENKKQILSNID-----AEIN 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 480 KLKDSLEEAREQLKVSDQNLTQSKEeahlsassledaHRKIENCLLQDKQKEEvikDLQSQLHKLQKESSKIEEERKHNR 559
Cdd:PRK01156 323 KYHAIIKKLSVLQKDYNDYIKKKSR------------YDDLNNQILELEGYEM---DYNSYLKSIESLKKKIEEYSKNIE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 560 QRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLE-EELLEIKG--LLEEKR 636
Cdd:PRK01156 388 RMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNgQSVCPVCGttLGEEKS 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 637 EQLKKSKEQEKA-LEEEI-----------EALRQEAKRKEKMAKEHLRKL---DEEKENLQAELTS---RSSHLDSSLNK 698
Cdd:PRK01156 468 NHIINHYNEKKSrLEEKIreieievkdidEKIVDLKKRKEYLESEEINKSineYNKIESARADLEDikiKINELKDKHDK 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 699 YNSSQKVIQELNAEIARQK-DSIMILQTQLDS----AIQKEKNCFQNMVsKEAYEELVRKSGNCQDDLTQALEKLTQATS 773
Cdd:PRK01156 548 YEEIKNRYKSLKLEDLDSKrTSWLNALAVISLidieTNRSRSNEIKKQL-NDLESRLQEIEIGFPDDKSYIDKSIREIEN 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 774 ETKSLNRSLQQTQERKAQLED---EIAAYEER---MKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQ- 846
Cdd:PRK01156 627 EANNLNNKYNEIQENKILIEKlrgKIDNYKKQiaeIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEi 706
|
570 580
....*....|....*....|....*....
gi 568957246 847 --SDLKMLAAKESQLREFQEEMATLRESL 873
Cdd:PRK01156 707 lrTRINELSDRINDINETLESMKKIKKAI 735
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
424-663 |
2.54e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.73 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 424 LHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSL---------QEARQSTSKIDCEALRAEIQKLKDSLEEAR----- 489
Cdd:pfam10174 477 NKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGlkkdsklksLEIAVEQKKEECSKLENQLKKAHNAEEAVRtnpei 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 490 -EQLKVSDQNLTQSKEEAHLSASSLE---DAHRKIENcllQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQEL 565
Cdd:pfam10174 557 nDRIRLLEQEVARYKEESGKAQAEVErllGILREVEN---EKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKK 633
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 566 SSELSEGQRRLSNAEKEKS---LLQKTLDEDEKKIDEL------FHSTQVS-EQKQRELTN---SIRKLEEELLEIK--- 629
Cdd:pfam10174 634 GAQLLEEARRREDNLADNSqqlQLEELMGALEKTRQELdatkarLSSTQQSlAEKDGHLTNlraERRKQLEEILEMKqea 713
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 568957246 630 ------------GLLEEKREQLKKSKEQEKALEEEIEALRQEAKRK 663
Cdd:pfam10174 714 llaaisekdaniALLELSSSKKKKTQEEVMALKREKDRLVHQLKQQ 759
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
420-569 |
2.84e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.10 E-value: 2.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 420 KDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEArqstskidcEALRAEIQKLKDSLEEAREQLKVSDQNL 499
Cdd:PRK09039 51 KDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAA---------EAERSRLQALLAELAGAGAAAEGRAGEL 121
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568957246 500 TQS-KEEAHLSASSLedahRKIEncLLQDKqkeevIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSEL 569
Cdd:PRK09039 122 AQElDSEKQVSARAL----AQVE--LLNQQ-----IAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
437-651 |
2.95e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 2.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 437 SLREKEAELEKLQCTTKELDtsLQEARQSTSKID-CEALRAEIQKLKDSLEEAREQLkvsdQNLTQSKEEAHLSASSLED 515
Cdd:COG4717 50 RLEKEADELFKPQGRKPELN--LKELKELEEELKeAEEKEEEYAELQEELEELEEEL----EELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 516 AHRKIENcLLQDKQKEEVIKDLQSQLHKLQKEsskiEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSL-LQKTLDEDE 594
Cdd:COG4717 124 LLQLLPL-YQELEALEAELAELPERLEELEER----LEELRELEEELEELEAELAELQEELEELLEQLSLaTEEELQDLA 198
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 568957246 595 KKIDELfhstqvsEQKQRELTNSIRKLEEELLEikglLEEKREQLKKSKEQEKALEE 651
Cdd:COG4717 199 EELEEL-------QQRLAELEEELEEAQEELEE----LEEELEQLENELEAAALEER 244
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
529-865 |
2.98e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.88 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 529 QKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQ-VS 607
Cdd:pfam02463 655 EEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQdKI 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 608 EQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKmakEHLRKLDEEKENLQAELTS 687
Cdd:pfam02463 735 NEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK---EEKLKAQEEELRALEEELK 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 688 RSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSaiqkEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEK 767
Cdd:pfam02463 812 EEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE----EELERLEEEITKEELLQELLLKEEELEEQKLKDE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 768 LTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQG------FQQQSEQEVHNFDKKLEEMSNQVLQW 841
Cdd:pfam02463 888 LESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEepeellLEEADEKEKEENNKEEEEERNKRLLL 967
|
330 340
....*....|....*....|....
gi 568957246 842 QRQHQSDLKMLAAKESQLREFQEE 865
Cdd:pfam02463 968 AKEELGKVNLMAIEEFEEKEERYN 991
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
418-784 |
3.34e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 41.28 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 418 QDKDERLHELEKNLMQVQNS--LREKEAELEKLQCTTKELDtSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVS 495
Cdd:pfam09731 124 QEKEKALEEVLKEAISKAESatAVAKEAKDDAIQAVKAHTD-SLKEASDTAEISREKATDSALQKAEALAEKLKEVINLA 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 496 DQNLTQSKeeahlsASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQ----ELSSELSE 571
Cdd:pfam09731 203 KQSEEEAA------PPLLDAAPETPPKLPEHLDNVEEKVEKAQSLAKLVDQYKELVASERIVFQQELVsifpDIIPVLKE 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 572 GQrrLSNAEKEKSLLQKTLDEDEKkidelfHSTQVSEQKQRELtnsiRKLEEELLEIKGLLEEKREQLkkSKEQEKALEE 651
Cdd:pfam09731 277 DN--LLSNDDLNSLIAHAHREIDQ------LSKKLAELKKREE----KHIERALEKQKEELDKLAEEL--SARLEEVRAA 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 652 EIEALRQEAKRKEkmakEHLRKLDEEKenLQAELTSRSSHLDSSLNKYNSSQKviQELNAEIARqkdsimilqtQLDSAI 731
Cdd:pfam09731 343 DEAQLRLEFERER----EEIRESYEEK--LRTELERQAEAHEEHLKDVLVEQE--IELQREFLQ----------DIKEKV 404
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 568957246 732 QKEKNCFQNMVSkEAYEELvrksgncqddltQALEKLTQATSETKSLNRSLQQ 784
Cdd:pfam09731 405 EEERAGRLLKLN-ELLANL------------KGLEKATSSHSEVEDENRKAQQ 444
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
386-600 |
3.35e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 3.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 386 DKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQcttkeldtslqearqs 465
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAE---------------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 466 tskidcealrAEIQKLKDSLEEAREQLKVSDQNLtqSKEEAHLSASSLEDAHRKIEN-CLLQDKQKeEVIKDLQSQLHKL 544
Cdd:COG3883 79 ----------AEIEERREELGERARALYRSGGSV--SYLDVLLGSESFSDFLDRLSAlSKIADADA-DLLEELKADKAEL 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568957246 545 QKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDEL 600
Cdd:COG3883 146 EAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAEL 201
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
555-834 |
4.01e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.26 E-value: 4.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 555 RKHNRQRLQELSSELSEGQRRLSNA----EKEKSLL-------QKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEE 623
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESnelhEKQKFYLrqsvidlQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 624 ELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQaelTSRSSHLDSSLNKynssq 703
Cdd:pfam15921 153 ELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMS---TMHFRSLGSAISK----- 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 704 kVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSK--EAYEELVRKSgncQDDLTQALEKLTQATSETKSLNRS 781
Cdd:pfam15921 225 -ILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQhqDRIEQLISEH---EVEITGLTEKASSARSQANSIQSQ 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 782 LQQTQER-----------------------------KAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLE 832
Cdd:pfam15921 301 LEIIQEQarnqnsmymrqlsdlestvsqlrselreaKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQ 380
|
..
gi 568957246 833 EM 834
Cdd:pfam15921 381 KL 382
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
632-873 |
4.14e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 4.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 632 LEEKREQLKKSKEQEKALEEeIEALRQEAKRkekmAKEHLRKLDEEKENLQAELTSRsshldsslnKYNSSQKVIQELNA 711
Cdd:COG4913 237 LERAHEALEDAREQIELLEP-IRELAERYAA----ARERLAELEYLRAALRLWFAQR---------RLELLEAELEELRA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 712 EIARQKDSIMILQTQLDSAIQKEkncfqnmvskEAYEELVRKSGncqddlTQALEKLtqatsetkslnrslqqtQERKAQ 791
Cdd:COG4913 303 ELARLEAELERLEARLDALREEL----------DELEAQIRGNG------GDRLEQL-----------------EREIER 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 792 LEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRE 871
Cdd:COG4913 350 LERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
..
gi 568957246 872 SL 873
Cdd:COG4913 430 SL 431
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
619-968 |
4.16e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.22 E-value: 4.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 619 RKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLD--SSL 696
Cdd:COG5022 785 RLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKrfSLL 864
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 697 NKYNSSQKVIQELnaEIARQKdsimilQTQLDSAIQKEKNCFQnmVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETK 776
Cdd:COG5022 865 KKETIYLQSAQRV--ELAERQ------LQELKIDVKSISSLKL--VNLELESEIIELKKSLSSDLIENLEFKTELIARLK 934
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 777 SLNRSLQ---------QTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQS---EQEVHNFDKKLEEmsnqvlqwqrq 844
Cdd:COG5022 935 KLLNNIDleegpsieyVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGnkaNSELKNFKKELAE----------- 1003
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 845 HQSDLKMLAAKESQLREFQEEMATLResllADEKEPYSPPAKLtpketcrhhrendQIMNNVEqwakEQKIANEKLGNKL 924
Cdd:COG5022 1004 LSKQYGALQESTKQLKELPVEVAELQ----SASKIISSESTEL-------------SILKPLQ----KLKGLLLLENNQL 1062
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 568957246 925 REQVKYIaKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLKAGN 968
Cdd:COG5022 1063 QARYKAL-KLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTN 1105
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
474-956 |
4.52e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.04 E-value: 4.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 474 LRAEIQKLKDsleeAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEE 553
Cdd:PRK01156 178 LRAEISNIDY----LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNR 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 554 ERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTN----------SIRKLEE 623
Cdd:PRK01156 254 YESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNidaeinkyhaIIKKLSV 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 624 ------ELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSrSSHLDSSLN 697
Cdd:PRK01156 334 lqkdynDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEID-PDAIKKELN 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 698 KYNSSqkvIQELNAEIARqkdsimiLQTQLDSAIQKEKNCFQNM---------------VSKEAYEELVRKSGNcqdDLT 762
Cdd:PRK01156 413 EINVK---LQDISSKVSS-------LNQRIRALRENLDELSRNMemlngqsvcpvcgttLGEEKSNHIINHYNE---KKS 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 763 QALEKLTQATSETKSLNRSLQQTQERKAQLE----DEIAAYEERMKKLNMELKKLQgfqqQSEQEVHNFDKKLEEMSNQV 838
Cdd:PRK01156 480 RLEEKIREIEIEVKDIDEKIVDLKKRKEYLEseeiNKSINEYNKIESARADLEDIK----IKINELKDKHDKYEEIKNRY 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 839 ----LQWQRQHQSD-LKMLA--------AKESQLREFQEEMATLRESLlaDEKEPYSPPAKLTPKETCRHHRENDQIMNN 905
Cdd:PRK01156 556 kslkLEDLDSKRTSwLNALAvislidieTNRSRSNEIKKQLNDLESRL--QEIEIGFPDDKSYIDKSIREIENEANNLNN 633
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 568957246 906 VEQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLK 956
Cdd:PRK01156 634 KYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLK 684
|
|
| RNase_Y_N |
pfam12072 |
RNase Y N-terminal region; |
493-669 |
5.12e-03 |
|
RNase Y N-terminal region;
Pssm-ID: 463456 [Multi-domain] Cd Length: 201 Bit Score: 39.48 E-value: 5.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 493 KVSDQNLTQSKEEAhlsASSLEDAHRKIENcllqdkQKEEVIKDLQSQLHKLQKEsskIEEERKHNRQRLQELSSELseg 572
Cdd:pfam12072 23 SIAEAKIGSAEELA---KRIIEEAKKEAET------KKKEALLEAKEEIHKLRAE---AERELKERRNELQRQERRL--- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 573 QRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGL-LEEKREQLKKSKEQEKALE- 650
Cdd:pfam12072 88 LQKEETLDRKDESLEKKEESLEKKEKELEAQQQQLEEKEEELEELIEEQRQELERISGLtSEEAKEILLDEVEEELRHEa 167
|
170 180
....*....|....*....|.
gi 568957246 651 -EEIEALRQEAKRK-EKMAKE 669
Cdd:pfam12072 168 aVMIKEIEEEAKEEaDKKAKE 188
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
418-684 |
5.35e-03 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 40.62 E-value: 5.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 418 QDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTslqearqstsKIDCEALRAEIQKLKDSLEEAREQLKVSDQ 497
Cdd:pfam02029 80 QEALERQKEFDPTIADEKESVAERKENNEEEENSSWEKEE----------KRDSRLGRYKEEETEIREKEYQENKWSTEV 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 498 NLTQSKEEAHlsasslEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEE-ERKHNRQRLQELSSELSE----- 571
Cdd:pfam02029 150 RQAEEEGEEE------EDKSEEAEEVPTENFAKEEVKDEKIKKEKKVKYESKVFLDqKRGHPEVKSQNGEEEVTKlkvtt 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 572 -GQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRE-LTNSIRKLEEELLEIKglleekreqlKKSKEQEKAL 649
Cdd:pfam02029 224 kRRQGGLSQSQEREEEAEVFLEAEQKLEELRRRRQEKESEEFEkLRQKQQEAELELEELK----------KKREERRKLL 293
|
250 260 270
....*....|....*....|....*....|....*
gi 568957246 650 EEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAE 684
Cdd:pfam02029 294 EEEEQRRKQEEAERKLREEEEKRRMKEEIERRRAE 328
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
618-714 |
5.61e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.84 E-value: 5.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 618 IRKLEEELLEikglLEEKREQLKKskEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSShLDSSLN 697
Cdd:COG0542 413 LDELERRLEQ----LEIEKEALKK--EQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEE-LEQRYG 485
|
90
....*....|....*..
gi 568957246 698 KYNSSQKVIQELNAEIA 714
Cdd:COG0542 486 KIPELEKELAELEEELA 502
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
427-708 |
5.73e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 40.80 E-value: 5.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 427 LEKnLMQVQNSLREKEAELEKLQCTT------KELDtSLQEARQSTSKIDcEALRAEIQKLK-----DSLEEAREQLKVS 495
Cdd:PTZ00108 1101 KEK-VEKLNAELEKKEKELEKLKNTTpkdmwlEDLD-KFEEALEEQEEVE-EKEIAKEQRLKsktkgKASKLRKPKLKKK 1177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 496 DQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSqlhklqkESSKIEEERKHNRQRLQELSSELSEGQRR 575
Cdd:PTZ00108 1178 EKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSS-------GSDQEDDEEQKTKPKKSSVKRLKSKKNNS 1250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 576 LSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQrelTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEA 655
Cdd:PTZ00108 1251 SKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPP---PPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKS 1327
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 568957246 656 lRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQE 708
Cdd:PTZ00108 1328 -EKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDE 1379
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
368-718 |
6.16e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.27 E-value: 6.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 368 ELDLHGLREETSCVIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEK 447
Cdd:COG4372 12 RLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 448 LQCTTKELDTSLQEARQSTSKI--DCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENC-- 523
Cdd:COG4372 92 AQAELAQAQEELESLQEEAEELqeELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALeq 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 524 ---LLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDEL 600
Cdd:COG4372 172 elqALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEEL 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 601 FHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKEN 680
Cdd:COG4372 252 LEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELA 331
|
330 340 350
....*....|....*....|....*....|....*...
gi 568957246 681 LQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKD 718
Cdd:COG4372 332 LAILLAELADLLQLLLVGLLDNDVLELLSKGAEAGVAD 369
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
694-942 |
6.47e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.38 E-value: 6.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 694 SSLNKYNSSQkvIQELNAEIARQKDSIMILQTQLDsaIQKEkncFQNMVSKEAYEELVRKSgncqddltqalEKLTQATS 773
Cdd:PHA02562 166 SEMDKLNKDK--IRELNQQIQTLDMKIDHIQQQIK--TYNK---NIEEQRKKNGENIARKQ-----------NKYDELVE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 774 ETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGfQQQSEQEVHNF-----------------DKKLEEMSN 836
Cdd:PHA02562 228 EAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKS-KIEQFQKVIKMyekggvcptctqqisegPDRITKIKD 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 837 QVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRE--SLLADEKEPYSppakltpketcRHHRENDQIMNNVEQWAKEQK 914
Cdd:PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLElkNKISTNKQSLI-----------TLVDKAKKVKAAIEELQAEFV 375
|
250 260 270
....*....|....*....|....*....|.
gi 568957246 915 IANE---KLGNKLREQVKYIAKLTGEKDHLH 942
Cdd:PHA02562 376 DNAEelaKLQDELDKIVKTKSELVKEKYHRG 406
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
422-668 |
6.74e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 39.89 E-value: 6.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 422 ERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTskidcEALRAEIQKLKDSLEEAREQLKVSDQNLTQ 501
Cdd:COG1340 22 EEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKR-----DELNEKVKELKEERDELNEKLNELREELDE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 502 SKEEA---HLSASSLEDAHRKIE--------NCLLQDKQKE--EVIKDLQSQLHKLQKESsKIEEERKHNRQRLQELSSE 568
Cdd:COG1340 97 LRKELaelNKAGGSIDKLRKEIErlewrqqtEVLSPEEEKElvEKIKELEKELEKAKKAL-EKNEKLKELRAELKELRKE 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 569 LSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKA 648
Cdd:COG1340 176 AEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADELHEEIIELQKELRELRKELKKLRKKQRA 255
|
250 260
....*....|....*....|
gi 568957246 649 LEEEIEALRQEAKRKEKMAK 668
Cdd:COG1340 256 LKREKEKEELEEKAEEIFEK 275
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
418-659 |
6.85e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 40.33 E-value: 6.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 418 QDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAE----IQKLKDSLEEAREQLK 493
Cdd:COG5185 274 AESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESLEEQLAAAEAEQELEESKREtetgIQNLTAEIEQGQESLT 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 494 vSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQ-DKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEG 572
Cdd:COG5185 354 -ENLEAIKEEIENIVGEVELSKSSEELDSFKDTiESTKESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQRQIEQA 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 573 QRRLSNAEKEKSLLQKTLDEDEKKIDELfhSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKA-LEE 651
Cdd:COG5185 433 TSSNEEVSKLLNELISELNKVMREADEE--SQSRLEEAYDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAkLER 510
|
....*...
gi 568957246 652 EIEALRQE 659
Cdd:COG5185 511 QLEGVRSK 518
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
472-812 |
7.51e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 40.22 E-value: 7.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 472 EALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAhlsassLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKI 551
Cdd:PLN03229 425 EAVKTPVRELEGEVEKLKEQILKAKESSSKPSELA------LNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKA 498
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 552 EEERKHNRQRLQELSSELS-EGQRRLSNAEKEKSLLQKtLDedekKIDELFHSTQVSEQKQR--ELTNSIRKLEEELLEi 628
Cdd:PLN03229 499 NSQDQLMHPVLMEKIEKLKdEFNKRLSRAPNYLSLKYK-LD----MLNEFSRAKALSEKKSKaeKLKAEINKKFKEVMD- 572
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 629 KGLLEEKREQLKKSKEQEKAleEEIEALRQEAKRK-EKMAKEHLRKLDE--EKENLQAELTSRSSHLDSSLNKYNSSQKV 705
Cdd:PLN03229 573 RPEIKEKMEALKAEVASSGA--SSGDELDDDLKEKvEKMKKEIELELAGvlKSMGLEVIGVTKKNKDTAEQTPPPNLQEK 650
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 706 IQELNAEIARQKDSImILQTQLDSAIQKEKncfqnmvskeayEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQT 785
Cdd:PLN03229 651 IESLNEEINKKIERV-IRSSDLKSKIELLK------------LEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSEL 717
|
330 340
....*....|....*....|....*..
gi 568957246 786 QERKAQLEDEIAAYEERMKKLNMELKK 812
Cdd:PLN03229 718 KEKFEELEAELAAARETAAESNGSLKN 744
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
316-734 |
7.54e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 40.12 E-value: 7.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 316 EDITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHglREETSCVIEKKDKETVFL-QY 394
Cdd:pfam07111 245 QELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFP--KKCRSLLNRWREKVFALMvQL 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 395 RLQDLQQQYTESQKLSLKKDKLlqdkdERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTskidceal 474
Cdd:pfam07111 323 KAQDLEHRDSVKQLRGQVAELQ-----EQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEAR-------- 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 475 raeiQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKI---ENCLLQDKQKEEVIKDLQSQ---LHKLQKES 548
Cdd:pfam07111 390 ----RRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIpslSNRLSYAVRKVHTIKGLMARkvaLAQLRQES 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 549 SKIEEERKHNRQRLQELSSELSEGQRRLsNAEKEKS--LLQKtldedekkidELFHSTQVSEQKQRELTNSIRKLEEELL 626
Cdd:pfam07111 466 CPPPPPAPPVDADLSLELEQLREERNRL-DAELQLSahLIQQ----------EVGRAREQGEAERQQLSEVAQQLEQELQ 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 627 EIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLR-KLDEEKENLQAELTSRSSHLDSSLNKYNSSQKV 705
Cdd:pfam07111 535 RAQESLASVGQQLEVARQGQQESTEEAASLRQELTQQQEIYGQALQeKVAEVETRLREQLSDTKRRLNEARREQAKAVVS 614
|
410 420
....*....|....*....|....*....
gi 568957246 706 IQELNAEIARQKDSIMILQTQLDSAIQKE 734
Cdd:pfam07111 615 LRQIQHRATQEKERNQELRRLQDEARKEE 643
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
388-687 |
7.70e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 40.22 E-value: 7.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 388 ETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLH-ELEKNLMQVQNSLREKEaELEKLQCTTKELDTSLQEARQst 466
Cdd:PLN03229 480 IAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKdEFNKRLSRAPNYLSLKY-KLDMLNEFSRAKALSEKKSKA-- 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 467 skidcEALRAEI-QKLKDSLE--EAREQLKVSDQNLTQSKeeahlsASSLEDahrkienclLQDKQKEEVIKdlqsqlhk 543
Cdd:PLN03229 557 -----EKLKAEInKKFKEVMDrpEIKEKMEALKAEVASSG------ASSGDE---------LDDDLKEKVEK-------- 608
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 544 lqkesskieeerkHNRQRLQELSSEL-SEGQRRLSNAEKEKSLLQKTLDEDEK-KIDELfhstqvSEQKQRELTNSIRkl 621
Cdd:PLN03229 609 -------------MKKEIELELAGVLkSMGLEVIGVTKKNKDTAEQTPPPNLQeKIESL------NEEINKKIERVIR-- 667
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568957246 622 eeeLLEIKGLLEE-KREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLrKLDEEKENLQAELTS 687
Cdd:PLN03229 668 ---SSDLKSKIELlKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSS-ELKEKFEELEAELAA 730
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
317-966 |
7.95e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.34 E-value: 7.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 317 DITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQYRL 396
Cdd:pfam02463 230 DYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 397 QDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLmqvqnslreKEAELEKLQCTTKELDTSLQEARQSTSKIDcealra 476
Cdd:pfam02463 310 VDDEEKLKESEKEKKKAEKELKKEKEEIEELEKEL---------KELEIKREAEEEEEEELEKLQEKLEQLEEE------ 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 477 eiQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERK 556
Cdd:pfam02463 375 --LLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEE 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 557 HNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKR 636
Cdd:pfam02463 453 LEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLG 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 637 E-QLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIAR 715
Cdd:pfam02463 533 DlGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKAT 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 716 QKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQaTSETKSLNRSLQQTQERKAQLEDE 795
Cdd:pfam02463 613 LEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKAS-LSELTKELLEIQELQEKAESELAK 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 796 IAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQwqrqhqsDLKMLAAKESQLREFQEEMATLRESLLA 875
Cdd:pfam02463 692 EEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINE-------ELKLLKQKIDEEEEEEEKSRLKKEEKEE 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 876 DEKEpysppakLTPKETCRHHRENDQIMNNVEQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKL 955
Cdd:pfam02463 765 EKSE-------LSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEE 837
|
650
....*....|.
gi 568957246 956 KNEIEEKKLKA 966
Cdd:pfam02463 838 LALELKEEQKL 848
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
308-522 |
8.22e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 8.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 308 PPTSSEDCEDITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDK 387
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAE----LAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 388 ETVFLQYRLQDLQQQYTE----SQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEAR 463
Cdd:COG4942 91 EIAELRAELEAQKEELAEllraLYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 568957246 464 QSTSKIdcEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIEN 522
Cdd:COG4942 171 AERAEL--EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
587-716 |
8.30e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.56 E-value: 8.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 587 QKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLE-------IKGLLEEKREQLKKSKEQEKALEEEIEALRQE 659
Cdd:PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAaeaersrLQALLAELAGAGAAAEGRAGELAQELDSEKQV 131
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568957246 660 AKRkekmAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVI----QELNAEIARQ 716
Cdd:PRK09039 132 SAR----ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIadlgRRLNVALAQR 188
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
431-735 |
8.35e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 39.67 E-value: 8.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 431 LMQVQNSLREKEAELEKLQCTTKELDTSLQEARQstskiDCEALRAEIQKLKDSLEEARE-----QLKVSDQNLTQSKEE 505
Cdd:pfam19220 50 LLELEALLAQERAAYGKLRRELAGLTRRLSAAEG-----ELEELVARLAKLEAALREAEAakeelRIELRDKTAQAEALE 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 506 AHLSASSLEDAHRKIENCLL--QDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEK 583
Cdd:pfam19220 125 RQLAAETEQNRALEEENKALreEAQAAEKALQRAEGELATARERLALLEQENRRLQALSEEQAAELAELTRRLAELETQL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 584 SLLQKTLDEDEKKID-------------ELFHSTQVSEQ-----KQRELTNSIRKLEEELLEIKGLLEEKREQL----KK 641
Cdd:pfam19220 205 DATRARLRALEGQLAaeqaereraeaqlEEAVEAHRAERaslrmKLEALTARAAATEQLLAEARNQLRDRDEAIraaeRR 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 642 SKEQEKA---LEEEIEALRQEAKRKEKMAKEHLR---KLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIAR 715
Cdd:pfam19220 285 LKEASIErdtLERRLAGLEADLERRTQQFQEMQRaraELEERAEMLTKALAAKDAALERAEERIASLSDRIAELTKRFEV 364
|
330 340
....*....|....*....|
gi 568957246 716 QKDSIMILQTQLDSAIQKEK 735
Cdd:pfam19220 365 ERAALEQANRRLKEELQRER 384
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
637-735 |
9.83e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.06 E-value: 9.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957246 637 EQLKKSKEQEKALEEEIEALRQEakrKEKMAKEHLRKLDEEKENLQAELTSrsshLDSSLNKYNSSQKVIQELNAEIARQ 716
Cdd:COG0542 411 EELDELERRLEQLEIEKEALKKE---QDEASFERLAELRDELAELEEELEA----LKARWEAEKELIEEIQELKEELEQR 483
|
90
....*....|....*....
gi 568957246 717 KDSIMILQTQLDSAIQKEK 735
Cdd:COG0542 484 YGKIPELEKELAELEEELA 502
|
|
| |
