|
Name |
Accession |
Description |
Interval |
E-value |
| Period_C |
pfam12114 |
Period protein 2/3C-terminal region; This domain is found in eukaryotes. This domain is ... |
899-1069 |
4.99e-85 |
|
Period protein 2/3C-terminal region; This domain is found in eukaryotes. This domain is typically between 164 to 200 amino acids in length. This domain is found associated with pfam08447.
:
Pssm-ID: 463464 Cd Length: 171 Bit Score: 272.74 E-value: 4.99e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 899 NSDAISTSSDLLNLLLGEDLCSATGSALSRSGASATSDSLGSSSLGFGTSQSGAGSSDTSHTSKYFGSIDSSENNHKAKM 978
Cdd:pfam12114 1 NSDALSTSSDLLDLLLQEDGCSGTGSALSGSGSSATSGSLGSGSNGCDTSGSGTGSSDTSHSSKYFGSIDSSENNHKAKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 979 IPDTEESEQFIKYVLQDPIWLLMANTDDSIMMTYQLPSRDLQAVLKEDQEKLKLLQRSQPRFTEGQRRELREVHPWVHTG 1058
Cdd:pfam12114 81 TAEVGEEEHFIKCVLQDPIWLLMANTDDSVMMTYQIPSRDLETVLKEDREKLKAMQKMQPRFTEDQKGELAEVHPWIQKG 160
|
170
....*....|.
gi 568908375 1059 GLPTAIDVTGC 1069
Cdd:pfam12114 161 GLPAALDLSEC 171
|
|
| PAS_3 |
pfam08447 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
203-287 |
1.41e-11 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
:
Pssm-ID: 430001 [Multi-domain] Cd Length: 89 Bit Score: 61.59 E-value: 1.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 203 VDERAVPLLGYLPQDLIETPVLVQ--LHPSDRPLMLAIHKKILqAGGQPFDySPIRFRTRNGEYITLDTSWSSFINpWSR 280
Cdd:pfam08447 4 WSPRFEEILGYTPEELLGKGESWLdlVHPDDRERVREALWEAL-KGGEPYS-GEYRIRRKDGEYRWVEARARPIRD-ENG 80
|
....*..
gi 568908375 281 KISFIIG 287
Cdd:pfam08447 81 KPVRVIG 87
|
|
| PHA03247 super family |
cl33720 |
large tegument protein UL36; Provisional |
649-897 |
5.95e-09 |
|
large tegument protein UL36; Provisional
The actual alignment was detected with superfamily member PHA03247:
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 60.72 E-value: 5.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 649 RVKTRDSSESTGSGGPVSHRPPLMGLNATAWSPSdtSQSSCPSAPFPTAVPAYPLPVFQ-APGIVSTPGTVVAP-----P 722
Cdd:PHA03247 2599 RAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPS--PAANEPDPHPPPTVPPPERPRDDpAPGRVSRPRRARRLgraaqA 2676
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 723 AATHTGFTMPVVP--MGTQPEFAVQPLPFAAPlAPVMAFMLPSYPFPPATPNLPQAFlPSQPHFPAHP-TLASEITPASQ 799
Cdd:PHA03247 2677 SSPPQRPRRRAARptVGSLTSLADPPPPPPTP-EPAPHALVSATPLPPGPAAARQAS-PALPAAPAPPaVPAGPATPGGP 2754
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 800 AEFPSRTSTLRQPCACPVTPPAGTVALGRASPPLFQSRGSSPLQLNLLQLEEAPEGSTGAAGTLGTTGTAASGLDCTSGT 879
Cdd:PHA03247 2755 ARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA 2834
|
250
....*....|....*...
gi 568908375 880 srdrQPKAPPTCNEPSDT 897
Cdd:PHA03247 2835 ----QPTAPPPPPGPPPP 2848
|
|
| PRK10263 super family |
cl35903 |
DNA translocase FtsK; Provisional |
304-841 |
4.92e-03 |
|
DNA translocase FtsK; Provisional
The actual alignment was detected with superfamily member PRK10263:
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 41.22 E-value: 4.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 304 SPCPEEKTPHPSVQELTEQIHRLLMQPVPHSGSSGYGSLGSNGSHEHLMSQTSSSDSNGQEESHRRRSGIFKTSGKIQTK 383
Cdd:PRK10263 374 APAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQ 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 384 SHVSHESGGQKEASVAEMQSSPPAQVkAVTTIERDSSGASLPKAsfpeELAYKNQPPCSY------QQISCLDSVIRYLE 457
Cdd:PRK10263 454 STFAPQSTYQTEQTYQQPAAQEPLYQ-QPQPVEQQPVVEPEPVV----EETKPARPPLYYfeeveeKRAREREQLAAWYQ 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 458 SCSEAAtlKRKCEFPANIPSRKATVSPGLHSGEAARPskVTSHTEvSAHLSSLTLPGKAESVVSLTSQCSYSSTIVH-VG 536
Cdd:PRK10263 529 PIPEPV--KEPEPIKSSLKAPSVAAVPPVEAAAAVSP--LASGVK-KATLATGAAATVAAPVFSLANSGGPRPQVKEgIG 603
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 537 DKKPQPELETVedmasgPESLDGAAGGLsqeKGPLQKLGLTKEVLAAHTQREEQGFLQ-------RFREVSRLSALQAHc 609
Cdd:PRK10263 604 PQLPRPKRIRV------PTRRELASYGI---KLPSQRAAEEKAREAQRNQYDSGDQYNddeidamQQDELARQFAQTQQ- 673
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 610 QNY---LQERSRAQASDRGLRNTSGLESSWKKTGKNRKlkskrvktrdSSESTGSGGPVShrpplmgLNATAWSPSDTSQ 686
Cdd:PRK10263 674 QRYgeqYQHDVPVNAEDADAAAEAELARQFAQTQQQRY----------SGEQPAGANPFS-------LDDFEFSPMKALL 736
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 687 SSCPSAPFPTavpayplpvfqaPGIvstpgtvvappaathtgftMPVVPMGTQPEFAVQPLPFAAPLAPVMAFMLPSYPF 766
Cdd:PRK10263 737 DDGPHEPLFT------------PIV-------------------EPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPV 785
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568908375 767 PPAtpnlPQAFLPSQPHFPAHPTLASE--ITPASQAEFPSRTSTLRQPCACPVTPPAGTVALGRASPPLFQSRGSSP 841
Cdd:PRK10263 786 APQ----PQYQQPQQPVAPQPQYQQPQqpVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRP 858
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Period_C |
pfam12114 |
Period protein 2/3C-terminal region; This domain is found in eukaryotes. This domain is ... |
899-1069 |
4.99e-85 |
|
Period protein 2/3C-terminal region; This domain is found in eukaryotes. This domain is typically between 164 to 200 amino acids in length. This domain is found associated with pfam08447.
Pssm-ID: 463464 Cd Length: 171 Bit Score: 272.74 E-value: 4.99e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 899 NSDAISTSSDLLNLLLGEDLCSATGSALSRSGASATSDSLGSSSLGFGTSQSGAGSSDTSHTSKYFGSIDSSENNHKAKM 978
Cdd:pfam12114 1 NSDALSTSSDLLDLLLQEDGCSGTGSALSGSGSSATSGSLGSGSNGCDTSGSGTGSSDTSHSSKYFGSIDSSENNHKAKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 979 IPDTEESEQFIKYVLQDPIWLLMANTDDSIMMTYQLPSRDLQAVLKEDQEKLKLLQRSQPRFTEGQRRELREVHPWVHTG 1058
Cdd:pfam12114 81 TAEVGEEEHFIKCVLQDPIWLLMANTDDSVMMTYQIPSRDLETVLKEDREKLKAMQKMQPRFTEDQKGELAEVHPWIQKG 160
|
170
....*....|.
gi 568908375 1059 GLPTAIDVTGC 1069
Cdd:pfam12114 161 GLPAALDLSEC 171
|
|
| PAS_3 |
pfam08447 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
203-287 |
1.41e-11 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Pssm-ID: 430001 [Multi-domain] Cd Length: 89 Bit Score: 61.59 E-value: 1.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 203 VDERAVPLLGYLPQDLIETPVLVQ--LHPSDRPLMLAIHKKILqAGGQPFDySPIRFRTRNGEYITLDTSWSSFINpWSR 280
Cdd:pfam08447 4 WSPRFEEILGYTPEELLGKGESWLdlVHPDDRERVREALWEAL-KGGEPYS-GEYRIRRKDGEYRWVEARARPIRD-ENG 80
|
....*..
gi 568908375 281 KISFIIG 287
Cdd:pfam08447 81 KPVRVIG 87
|
|
| PAS |
cd00130 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
189-291 |
1.32e-10 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Pssm-ID: 238075 [Multi-domain] Cd Length: 103 Bit Score: 59.18 E-value: 1.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 189 IFTTTHTPNCLFqaVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQaGGQPFDYsPIRFRTRNGEYITLD 268
Cdd:cd00130 5 VIVLDLDGRILY--ANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERLENLLS-GGEPVTL-EVRLRRKDGSVIWVL 80
|
90 100
....*....|....*....|...
gi 568908375 269 TSWSSFINPWSRKISFIIGRHKV 291
Cdd:cd00130 81 VSLTPIRDEGGEVIGLLGVVRDI 103
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
649-897 |
5.95e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 60.72 E-value: 5.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 649 RVKTRDSSESTGSGGPVSHRPPLMGLNATAWSPSdtSQSSCPSAPFPTAVPAYPLPVFQ-APGIVSTPGTVVAP-----P 722
Cdd:PHA03247 2599 RAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPS--PAANEPDPHPPPTVPPPERPRDDpAPGRVSRPRRARRLgraaqA 2676
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 723 AATHTGFTMPVVP--MGTQPEFAVQPLPFAAPlAPVMAFMLPSYPFPPATPNLPQAFlPSQPHFPAHP-TLASEITPASQ 799
Cdd:PHA03247 2677 SSPPQRPRRRAARptVGSLTSLADPPPPPPTP-EPAPHALVSATPLPPGPAAARQAS-PALPAAPAPPaVPAGPATPGGP 2754
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 800 AEFPSRTSTLRQPCACPVTPPAGTVALGRASPPLFQSRGSSPLQLNLLQLEEAPEGSTGAAGTLGTTGTAASGLDCTSGT 879
Cdd:PHA03247 2755 ARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA 2834
|
250
....*....|....*...
gi 568908375 880 srdrQPKAPPTCNEPSDT 897
Cdd:PHA03247 2835 ----QPTAPPPPPGPPPP 2848
|
|
| PAS |
smart00091 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
189-244 |
1.29e-04 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.
Pssm-ID: 214512 Cd Length: 67 Bit Score: 41.23 E-value: 1.29e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 568908375 189 IFTTTHTPNCLFqaVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQ 244
Cdd:smart00091 14 IFVLDLDGRILY--ANPAAEELLGYSPEELIGKSLLELIHPEDRERVQEALQRLLS 67
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
659-962 |
1.59e-04 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 46.06 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 659 TGSGGPVSHRPPLMGLNATAWSPSDTSQSSCPSAPFPTavPAYPLPVFQAPGIVSTPGTVVAPpaathtgftmpvVPMGT 738
Cdd:pfam05109 456 TNLTAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPS--PRDNGTESKAPDMTSPTSAVTTP------------TPNAT 521
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 739 QPEFAV-QPLPFAAplAPVMAFMLPSYPFPPATPNlpqaflpsqphfPAHPTLASeITPASQAEFPSRTSTLRQPCACPV 817
Cdd:pfam05109 522 SPTPAVtTPTPNAT--SPTLGKTSPTSAVTTPTPN------------ATSPTPAV-TTPTPNATIPTLGKTSPTSAVTTP 586
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 818 TPPAGTVALGRASPPLFQSRGSSPLQLNLLQLEEAPEGSTGAAgtlgTTGTaaSGLDCTSGTSRDRQPKAPPTCNEPSDT 897
Cdd:pfam05109 587 TPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAV----TTGQ--HNITSSSTSSMSLRPSSISETLSPSTS 660
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568908375 898 QNSDAISTSSDLLNLLLGEDLCSATGSALSRSGASATSDSLGSsslgfGTSQSGAGSSDTSHTSK 962
Cdd:pfam05109 661 DNSTSHMPLLTSAHPTGGENITQVTPASTSTHHVSTSSPAPRP-----GTTSQASGPGNSSTSTK 720
|
|
| PAS |
COG2202 |
PAS domain [Signal transduction mechanisms]; |
193-287 |
1.32e-03 |
|
PAS domain [Signal transduction mechanisms];
Pssm-ID: 441804 [Multi-domain] Cd Length: 258 Bit Score: 41.93 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 193 THTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDyspIRFRTRNGEYITLDTSWS 272
Cdd:COG2202 152 VLDLDGRILYVNPAAEELLGYSPEELLGKSLLDLLHPEDRERLLELLRRLLEGGRESYE---LELRLKDGDGRWVWVEAS 228
|
90
....*....|....*
gi 568908375 273 SFINPWSRKISFIIG 287
Cdd:COG2202 229 AVPLRDGGEVIGVLG 243
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
304-841 |
4.92e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 41.22 E-value: 4.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 304 SPCPEEKTPHPSVQELTEQIHRLLMQPVPHSGSSGYGSLGSNGSHEHLMSQTSSSDSNGQEESHRRRSGIFKTSGKIQTK 383
Cdd:PRK10263 374 APAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQ 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 384 SHVSHESGGQKEASVAEMQSSPPAQVkAVTTIERDSSGASLPKAsfpeELAYKNQPPCSY------QQISCLDSVIRYLE 457
Cdd:PRK10263 454 STFAPQSTYQTEQTYQQPAAQEPLYQ-QPQPVEQQPVVEPEPVV----EETKPARPPLYYfeeveeKRAREREQLAAWYQ 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 458 SCSEAAtlKRKCEFPANIPSRKATVSPGLHSGEAARPskVTSHTEvSAHLSSLTLPGKAESVVSLTSQCSYSSTIVH-VG 536
Cdd:PRK10263 529 PIPEPV--KEPEPIKSSLKAPSVAAVPPVEAAAAVSP--LASGVK-KATLATGAAATVAAPVFSLANSGGPRPQVKEgIG 603
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 537 DKKPQPELETVedmasgPESLDGAAGGLsqeKGPLQKLGLTKEVLAAHTQREEQGFLQ-------RFREVSRLSALQAHc 609
Cdd:PRK10263 604 PQLPRPKRIRV------PTRRELASYGI---KLPSQRAAEEKAREAQRNQYDSGDQYNddeidamQQDELARQFAQTQQ- 673
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 610 QNY---LQERSRAQASDRGLRNTSGLESSWKKTGKNRKlkskrvktrdSSESTGSGGPVShrpplmgLNATAWSPSDTSQ 686
Cdd:PRK10263 674 QRYgeqYQHDVPVNAEDADAAAEAELARQFAQTQQQRY----------SGEQPAGANPFS-------LDDFEFSPMKALL 736
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 687 SSCPSAPFPTavpayplpvfqaPGIvstpgtvvappaathtgftMPVVPMGTQPEFAVQPLPFAAPLAPVMAFMLPSYPF 766
Cdd:PRK10263 737 DDGPHEPLFT------------PIV-------------------EPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPV 785
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568908375 767 PPAtpnlPQAFLPSQPHFPAHPTLASE--ITPASQAEFPSRTSTLRQPCACPVTPPAGTVALGRASPPLFQSRGSSP 841
Cdd:PRK10263 786 APQ----PQYQQPQQPVAPQPQYQQPQqpVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRP 858
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Period_C |
pfam12114 |
Period protein 2/3C-terminal region; This domain is found in eukaryotes. This domain is ... |
899-1069 |
4.99e-85 |
|
Period protein 2/3C-terminal region; This domain is found in eukaryotes. This domain is typically between 164 to 200 amino acids in length. This domain is found associated with pfam08447.
Pssm-ID: 463464 Cd Length: 171 Bit Score: 272.74 E-value: 4.99e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 899 NSDAISTSSDLLNLLLGEDLCSATGSALSRSGASATSDSLGSSSLGFGTSQSGAGSSDTSHTSKYFGSIDSSENNHKAKM 978
Cdd:pfam12114 1 NSDALSTSSDLLDLLLQEDGCSGTGSALSGSGSSATSGSLGSGSNGCDTSGSGTGSSDTSHSSKYFGSIDSSENNHKAKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 979 IPDTEESEQFIKYVLQDPIWLLMANTDDSIMMTYQLPSRDLQAVLKEDQEKLKLLQRSQPRFTEGQRRELREVHPWVHTG 1058
Cdd:pfam12114 81 TAEVGEEEHFIKCVLQDPIWLLMANTDDSVMMTYQIPSRDLETVLKEDREKLKAMQKMQPRFTEDQKGELAEVHPWIQKG 160
|
170
....*....|.
gi 568908375 1059 GLPTAIDVTGC 1069
Cdd:pfam12114 161 GLPAALDLSEC 171
|
|
| PAS_3 |
pfam08447 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
203-287 |
1.41e-11 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Pssm-ID: 430001 [Multi-domain] Cd Length: 89 Bit Score: 61.59 E-value: 1.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 203 VDERAVPLLGYLPQDLIETPVLVQ--LHPSDRPLMLAIHKKILqAGGQPFDySPIRFRTRNGEYITLDTSWSSFINpWSR 280
Cdd:pfam08447 4 WSPRFEEILGYTPEELLGKGESWLdlVHPDDRERVREALWEAL-KGGEPYS-GEYRIRRKDGEYRWVEARARPIRD-ENG 80
|
....*..
gi 568908375 281 KISFIIG 287
Cdd:pfam08447 81 KPVRVIG 87
|
|
| PAS |
cd00130 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
189-291 |
1.32e-10 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Pssm-ID: 238075 [Multi-domain] Cd Length: 103 Bit Score: 59.18 E-value: 1.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 189 IFTTTHTPNCLFqaVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQaGGQPFDYsPIRFRTRNGEYITLD 268
Cdd:cd00130 5 VIVLDLDGRILY--ANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERLENLLS-GGEPVTL-EVRLRRKDGSVIWVL 80
|
90 100
....*....|....*....|...
gi 568908375 269 TSWSSFINPWSRKISFIIGRHKV 291
Cdd:cd00130 81 VSLTPIRDEGGEVIGLLGVVRDI 103
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
649-897 |
5.95e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 60.72 E-value: 5.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 649 RVKTRDSSESTGSGGPVSHRPPLMGLNATAWSPSdtSQSSCPSAPFPTAVPAYPLPVFQ-APGIVSTPGTVVAP-----P 722
Cdd:PHA03247 2599 RAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPS--PAANEPDPHPPPTVPPPERPRDDpAPGRVSRPRRARRLgraaqA 2676
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 723 AATHTGFTMPVVP--MGTQPEFAVQPLPFAAPlAPVMAFMLPSYPFPPATPNLPQAFlPSQPHFPAHP-TLASEITPASQ 799
Cdd:PHA03247 2677 SSPPQRPRRRAARptVGSLTSLADPPPPPPTP-EPAPHALVSATPLPPGPAAARQAS-PALPAAPAPPaVPAGPATPGGP 2754
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 800 AEFPSRTSTLRQPCACPVTPPAGTVALGRASPPLFQSRGSSPLQLNLLQLEEAPEGSTGAAGTLGTTGTAASGLDCTSGT 879
Cdd:PHA03247 2755 ARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA 2834
|
250
....*....|....*...
gi 568908375 880 srdrQPKAPPTCNEPSDT 897
Cdd:PHA03247 2835 ----QPTAPPPPPGPPPP 2848
|
|
| PAS_11 |
pfam14598 |
PAS domain; This family includes the PAS-B domain of NCOA1 (Nuclear receptor coactivator 1), ... |
190-291 |
1.08e-08 |
|
PAS domain; This family includes the PAS-B domain of NCOA1 (Nuclear receptor coactivator 1), which binds to an LXXLL motif in the C-terminal region of STAT6 (Signal transducer and activator of transcription 6).
Pssm-ID: 464214 [Multi-domain] Cd Length: 110 Bit Score: 54.22 E-value: 1.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 190 FTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFdySPI-RFRTRNGEYITLD 268
Cdd:pfam14598 4 FTTRHDIDGKIISCDTRAPFSLGYEKDELVGRSIYDLVHPQDLRTAKSHLREIIQTRGRAT--SPSyRLRLRDGDFLSVH 81
|
90 100
....*....|....*....|...
gi 568908375 269 TSWSSFINPWSRKISFIIGRHKV 291
Cdd:pfam14598 82 TKSKLFLNQNSNQQPFIMCTHTI 104
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
658-904 |
7.40e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 57.26 E-value: 7.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 658 STGSGGPVSHRPPlmGLNATAWSPSDTSQSSCPSAPFPTAVPAYPLPVFQAPGIVSTPGTVVAPPAAThtgftMPVVPmG 737
Cdd:PHA03247 2769 PAPPAAPAAGPPR--RLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA-----QPTAP-P 2840
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 738 TQPEFAVQPLPFAAPLAPVMAFML--PSYPFP--PATPNLP----------------QAFLPSQPHFPAHPTLASEITPA 797
Cdd:PHA03247 2841 PPPGPPPPSLPLGGSVAPGGDVRRrpPSRSPAakPAAPARPpvrrlarpavsrstesFALPPDQPERPPQPQAPPPPQPQ 2920
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 798 SQAEFPSRTSTLRQPCACPVTPPA---GTVALGRASP--PLFQSRGSSPLQLN---LLQLEEAPEGSTGAAGTLGTTGTA 869
Cdd:PHA03247 2921 PQPPPPPQPQPPPPPPPRPQPPLApttDPAGAGEPSGavPQPWLGALVPGRVAvprFRVPQPAPSREAPASSTPPLTGHS 3000
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 568908375 870 ASGLDC-TSGTSRDRQPKAPP-----TCNEPSDTQNSDAIS 904
Cdd:PHA03247 3001 LSRVSSwASSLALHEETDPPPvslkqTLWPPDDTEDSDADS 3041
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
663-854 |
8.04e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 53.79 E-value: 8.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 663 GPVSHRPPLMGLNATAWSPSDTSQSSCPSAPFPTAVPAYPL-PVFQAP--GIVSTPGTVVAPPAATHTGFTMPVVPMGTQ 739
Cdd:PHA03247 2724 GPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAgPPAPAPpaAPAAGPPRRLTRPAVASLSESRESLPSPWD 2803
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 740 PefAVQPLPFAAPLAPVMAFMLPSYPFPPATPNLPQAflPSQPHFPAHPTLASEITPASQAEFpSRTSTLRQPCACPVTP 819
Cdd:PHA03247 2804 P--ADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTA--PPPPPGPPPPSLPLGGSVAPGGDV-RRRPPSRSPAAKPAAP 2878
|
170 180 190
....*....|....*....|....*....|....*
gi 568908375 820 PAGTVAlGRASPPLFQSRGSSPLQLNLLQLEEAPE 854
Cdd:PHA03247 2879 ARPPVR-RLARPAVSRSTESFALPPDQPERPPQPQ 2912
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
664-841 |
1.14e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 49.49 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 664 PVSHRPPLMGLNATAWSPSDTSQSSCPSAPFPTAVPAYPLPVFQAPGIVSTPGTVVAPPAATHTGFTMPVVPMGTQPEFA 743
Cdd:PRK12323 397 PAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAA 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 744 VQPLPFAAPLAPVMAFMLPSYPFPPATPNLPQAFLPSQPHFPAHPTLASEITPASQAEFPSRTSTLRQPCACPVTPPAGT 823
Cdd:PRK12323 477 AAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAA 556
|
170
....*....|....*...
gi 568908375 824 VALGRASPPLFQSRGSSP 841
Cdd:PRK12323 557 TEPVVAPRPPRASASGLP 574
|
|
| PAS |
smart00091 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
189-244 |
1.29e-04 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.
Pssm-ID: 214512 Cd Length: 67 Bit Score: 41.23 E-value: 1.29e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 568908375 189 IFTTTHTPNCLFqaVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQ 244
Cdd:smart00091 14 IFVLDLDGRILY--ANPAAEELLGYSPEELIGKSLLELIHPEDRERVQEALQRLLS 67
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
676-832 |
1.38e-04 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 46.23 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 676 ATAWSPSDTSQSSCPSAPFPTAVPAYPLPVFQ-APGiVSTPGTVVAPPAATHTGFTMPVVPMGTQPEFAVQPLPFAAPLA 754
Cdd:PRK10263 330 TQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQpVPG-PQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYY 408
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568908375 755 PVMAFMLPSYPFPPATPNLPQAFLPSQPHFPAHPTLASEITPASQAEF-PSRTSTLRQPCACPVTPPAGTVALGRASPP 832
Cdd:PRK10263 409 APAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFaPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQ 487
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
659-962 |
1.59e-04 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 46.06 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 659 TGSGGPVSHRPPLMGLNATAWSPSDTSQSSCPSAPFPTavPAYPLPVFQAPGIVSTPGTVVAPpaathtgftmpvVPMGT 738
Cdd:pfam05109 456 TNLTAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPS--PRDNGTESKAPDMTSPTSAVTTP------------TPNAT 521
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 739 QPEFAV-QPLPFAAplAPVMAFMLPSYPFPPATPNlpqaflpsqphfPAHPTLASeITPASQAEFPSRTSTLRQPCACPV 817
Cdd:pfam05109 522 SPTPAVtTPTPNAT--SPTLGKTSPTSAVTTPTPN------------ATSPTPAV-TTPTPNATIPTLGKTSPTSAVTTP 586
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 818 TPPAGTVALGRASPPLFQSRGSSPLQLNLLQLEEAPEGSTGAAgtlgTTGTaaSGLDCTSGTSRDRQPKAPPTCNEPSDT 897
Cdd:pfam05109 587 TPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAV----TTGQ--HNITSSSTSSMSLRPSSISETLSPSTS 660
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568908375 898 QNSDAISTSSDLLNLLLGEDLCSATGSALSRSGASATSDSLGSsslgfGTSQSGAGSSDTSHTSK 962
Cdd:pfam05109 661 DNSTSHMPLLTSAHPTGGENITQVTPASTSTHHVSTSSPAPRP-----GTTSQASGPGNSSTSTK 720
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
685-902 |
4.43e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 44.48 E-value: 4.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 685 SQSSCPSAPFPTAVPayplPVFQAPGIVSTPGTVVAPPAATHTGFTMPVVPMGTQPEFAVQPLPFAAPLAPVMAFMLPSY 764
Cdd:PRK12323 366 GQSGGGAGPATAAAA----PVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASA 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 765 PFPPATPNLPQAFLPSQPHFPAHPTLASEITPASQAEFPSRTSTLRQPCACP-VTPPAGTVALGRASPPLFQSRGSSPLQ 843
Cdd:PRK12323 442 RGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADdDPPPWEELPPEFASPAPAQPDAAPAGW 521
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 568908375 844 LNLLQLEEAPEGSTGAAGTLgTTGTAASGLDCTSGTSRDRQPKAPPTCNEPSDTQNSDA 902
Cdd:PRK12323 522 VAESIPDPATADPDDAFETL-APAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDG 579
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
656-871 |
9.42e-04 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 43.60 E-value: 9.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 656 SESTGSGGPVSHRPPLMGLNATAWSPSDTSQSSCPSAPF-------PTAVPAYPLPVFQA---------PGIVSTPGTVV 719
Cdd:pfam03154 312 GPSPAAPGQSQQRIHTPPSQSQLQSQQPPREQPLPPAPLsmphikpPPTTPIPQLPNPQShkhpphlsgPSPFQMNSNLP 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 720 APPA-------ATHTGFTMPVVPMGTQPEfaVQPLPfAAPLAPVMAFMLPSYPfPPATPNLPQAFL---PSQPHFPAHPT 789
Cdd:pfam03154 392 PPPAlkplsslSTHHPPSAHPPPLQLMPQ--SQQLP-PPPAQPPVLTQSQSLP-PPAASHPPTSGLhqvPSQSPFPQHPF 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 790 LAS---EITPAS--QAEFPSRTSTLRQPCACPVTPPAGTVALGRASPPLFQSRGSSPLQLNLLQLEEAPEGSTGAAGTLG 864
Cdd:pfam03154 468 VPGgppPITPPSgpPTSTSSAMPGIQPPSSASVSSSGPVPAAVSCPLPPVQIKEEALDEAEEPESPPPPPRSPSPEPTVV 547
|
....*..
gi 568908375 865 TTGTAAS 871
Cdd:pfam03154 548 NTPSHAS 554
|
|
| PAS |
COG2202 |
PAS domain [Signal transduction mechanisms]; |
193-287 |
1.32e-03 |
|
PAS domain [Signal transduction mechanisms];
Pssm-ID: 441804 [Multi-domain] Cd Length: 258 Bit Score: 41.93 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 193 THTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDyspIRFRTRNGEYITLDTSWS 272
Cdd:COG2202 152 VLDLDGRILYVNPAAEELLGYSPEELLGKSLLDLLHPEDRERLLELLRRLLEGGRESYE---LELRLKDGDGRWVWVEAS 228
|
90
....*....|....*
gi 568908375 273 SFINPWSRKISFIIG 287
Cdd:COG2202 229 AVPLRDGGEVIGVLG 243
|
|
| PHA02682 |
PHA02682 |
ORF080 virion core protein; Provisional |
690-805 |
2.04e-03 |
|
ORF080 virion core protein; Provisional
Pssm-ID: 177464 [Multi-domain] Cd Length: 280 Bit Score: 41.39 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 690 PSAPFPTAVPAYPLPVFQAPG-IVSTPGTVVA-PPAATHTGFTMPVVPMGTQPEFAVQPLPFAAPLAPVmafmLPSY-PF 766
Cdd:PHA02682 84 PSPACAAPAPACPACAPAAPApAVTCPAPAPAcPPATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPP----LPTPkPA 159
|
90 100 110
....*....|....*....|....*....|....*....
gi 568908375 767 PPATPNLPQAFLPSqPHFPAHPTLASEITPASQAEFPSR 805
Cdd:PHA02682 160 PAAKPIFLHNQLPP-PDYPAASCPTIETAPAASPVLEPR 197
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
654-894 |
3.50e-03 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 41.59 E-value: 3.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 654 DSSESTGSGGPVSHRPPLMGLNATAWSPsdtsQSSCPSAPFPTAVPAY---PLPVFQAPGIVSTPGTVVAPPA-ATHTGF 729
Cdd:PHA03378 549 ESDEPASTEPVHDQLLPAPGLGPLQIQP----LTSPTTSQLASSAPSYaqtPWPVPHPSQTPEPPTTQSHIPEtSAPRQW 624
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 730 TMPVVPMGTQPeFAVQPLPFAAPLAPVmafmlPSYPfPPATPNLPQAFLPSQPHFPAHPTLASEIT-------PASQAEF 802
Cdd:PHA03378 625 PMPLRPIPMRP-LRMQPITFNVLVFPT-----PHQP-PQVEITPYKPTWTQIGHIPYQPSPTGANTmlpiqwaPGTMQPP 697
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 803 PSRTSTLRQPCACPVT--PPAGTV--------ALGRASPPLFQSRGSSPLQLNLLQLEEAPEGSTGAAGTLGTTGTAASG 872
Cdd:PHA03378 698 PRAPTPMRPPAAPPGRaqRPAAATgrarppaaAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQ 777
|
250 260
....*....|....*....|..
gi 568908375 873 LDCTSGTSRDRQPKAPPTCNEP 894
Cdd:PHA03378 778 PPPQAPPAPQQRPRGAPTPQPP 799
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
304-841 |
4.92e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 41.22 E-value: 4.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 304 SPCPEEKTPHPSVQELTEQIHRLLMQPVPHSGSSGYGSLGSNGSHEHLMSQTSSSDSNGQEESHRRRSGIFKTSGKIQTK 383
Cdd:PRK10263 374 APAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQ 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 384 SHVSHESGGQKEASVAEMQSSPPAQVkAVTTIERDSSGASLPKAsfpeELAYKNQPPCSY------QQISCLDSVIRYLE 457
Cdd:PRK10263 454 STFAPQSTYQTEQTYQQPAAQEPLYQ-QPQPVEQQPVVEPEPVV----EETKPARPPLYYfeeveeKRAREREQLAAWYQ 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 458 SCSEAAtlKRKCEFPANIPSRKATVSPGLHSGEAARPskVTSHTEvSAHLSSLTLPGKAESVVSLTSQCSYSSTIVH-VG 536
Cdd:PRK10263 529 PIPEPV--KEPEPIKSSLKAPSVAAVPPVEAAAAVSP--LASGVK-KATLATGAAATVAAPVFSLANSGGPRPQVKEgIG 603
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 537 DKKPQPELETVedmasgPESLDGAAGGLsqeKGPLQKLGLTKEVLAAHTQREEQGFLQ-------RFREVSRLSALQAHc 609
Cdd:PRK10263 604 PQLPRPKRIRV------PTRRELASYGI---KLPSQRAAEEKAREAQRNQYDSGDQYNddeidamQQDELARQFAQTQQ- 673
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 610 QNY---LQERSRAQASDRGLRNTSGLESSWKKTGKNRKlkskrvktrdSSESTGSGGPVShrpplmgLNATAWSPSDTSQ 686
Cdd:PRK10263 674 QRYgeqYQHDVPVNAEDADAAAEAELARQFAQTQQQRY----------SGEQPAGANPFS-------LDDFEFSPMKALL 736
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908375 687 SSCPSAPFPTavpayplpvfqaPGIvstpgtvvappaathtgftMPVVPMGTQPEFAVQPLPFAAPLAPVMAFMLPSYPF 766
Cdd:PRK10263 737 DDGPHEPLFT------------PIV-------------------EPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPV 785
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568908375 767 PPAtpnlPQAFLPSQPHFPAHPTLASE--ITPASQAEFPSRTSTLRQPCACPVTPPAGTVALGRASPPLFQSRGSSP 841
Cdd:PRK10263 786 APQ----PQYQQPQQPVAPQPQYQQPQqpVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRP 858
|
|
| |
