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Conserved domains on  [gi|569010595|ref|XP_006528322|]
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DMRT-like family C1c2 isoform X3 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DMRT-like super family cl24378
Doublesex-and mab-3-related transcription factor C1 and C2; DMRT-like is a C-terminal domain ...
 158-226 2.33e-08

Doublesex-and mab-3-related transcription factor C1 and C2; DMRT-like is a C-terminal domain found on eukaryotic proteins for doublesex-and mab-3-related transcription factors C1 and C2. This is not the DM DNA-binding region. The family is all disorder and low-complexity.


The actual alignment was detected with superfamily member pfam15791:

Pssm-ID: 464871  Cd Length: 119  Bit Score: 50.96  E-value: 2.33e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 569010595  158 PSTEIHGAFAESNPCSSMVLLPRTSTDHHHpLESQGSGASDQASVPASLECQEILEAAEALMTLKNSSW 226
Cdd:pfam15791   1 LSGEPQGPPALPSTCSSLILQPCATPDPLL-LQPQVPEASSLAWVSAASEWQRKLEAAEALLALKDSPQ 68
 
Name Accession Description Interval E-value
DMRT-like pfam15791
Doublesex-and mab-3-related transcription factor C1 and C2; DMRT-like is a C-terminal domain ...
 158-226 2.33e-08

Doublesex-and mab-3-related transcription factor C1 and C2; DMRT-like is a C-terminal domain found on eukaryotic proteins for doublesex-and mab-3-related transcription factors C1 and C2. This is not the DM DNA-binding region. The family is all disorder and low-complexity.


Pssm-ID: 464871  Cd Length: 119  Bit Score: 50.96  E-value: 2.33e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 569010595  158 PSTEIHGAFAESNPCSSMVLLPRTSTDHHHpLESQGSGASDQASVPASLECQEILEAAEALMTLKNSSW 226
Cdd:pfam15791   1 LSGEPQGPPALPSTCSSLILQPCATPDPLL-LQPQVPEASSLAWVSAASEWQRKLEAAEALLALKDSPQ 68
 
Name Accession Description Interval E-value
DMRT-like pfam15791
Doublesex-and mab-3-related transcription factor C1 and C2; DMRT-like is a C-terminal domain ...
 158-226 2.33e-08

Doublesex-and mab-3-related transcription factor C1 and C2; DMRT-like is a C-terminal domain found on eukaryotic proteins for doublesex-and mab-3-related transcription factors C1 and C2. This is not the DM DNA-binding region. The family is all disorder and low-complexity.


Pssm-ID: 464871  Cd Length: 119  Bit Score: 50.96  E-value: 2.33e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 569010595  158 PSTEIHGAFAESNPCSSMVLLPRTSTDHHHpLESQGSGASDQASVPASLECQEILEAAEALMTLKNSSW 226
Cdd:pfam15791   1 LSGEPQGPPALPSTCSSLILQPCATPDPLL-LQPQVPEASSLAWVSAASEWQRKLEAAEALLALKDSPQ 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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