|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
276-618 |
1.70e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.60 E-value: 1.70e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 276 QQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQgerlEHAAALRALQDQIQTAKtQELNMLREQTSELASELQHRQ 355
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAELEELEAELE----ELEAELAELEAELEELR-LELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 356 AEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAmETLQEKSQHKEELGAV 435
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE-AELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 436 RLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEE 515
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 516 SLQQQQQEQEETLKLCRE-----EHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQevkdtVDGQRILEKKGSA 590
Cdd:COG1196 454 LEEEEEALLELLAELLEEaalleAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL-----LAGLRGLAGAVAV 528
|
330 340
....*....|....*....|....*...
gi 569008852 591 VLKDLKRqlhLERKRADKLQERLQEILT 618
Cdd:COG1196 529 LIGVEAA---YEAALEAALAAALQNIVV 553
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
205-511 |
2.00e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.22 E-value: 2.00e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 205 ELKWEMEREEKKLLWEQLQGLesskQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfndsRNKIEELQQRKEAdLK 284
Cdd:COG1196 217 ELKEELKELEAELLLLKLREL----EAELEELEAELEELEAELEELEAELAELEAELEEL----RLELEELELELEE-AQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 285 AQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNmLREQTSELASELQHRQAEYEELMGQ 364
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEE-LEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 365 KDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDEL--AMETLQEKSQHKEELGAVRLRHEKE 442
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLeeELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 443 LLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDG-AKGWFERRLK 511
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGfLEGVKAALLL 516
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
201-465 |
2.46e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 2.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 201 LAEVELKWEMEREEKKLLWEQLQGLEsskqAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfndsrNKIEELQQRKE 280
Cdd:COG1196 241 LEELEAELEELEAELEELEAELAELE----AELEELRLELEELELELEEAQAEEYELLAELARL-----EQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 281 ADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEyEE 360
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL-LE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 361 LMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAmETLQEKSQHKEELGAVRLRHE 440
Cdd:COG1196 391 ALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA-EEEAELEEEEEALLELLAELL 469
|
250 260
....*....|....*....|....*
gi 569008852 441 KELLGVRARYERELRELHEDKKRQE 465
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLL 494
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
272-574 |
2.57e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 2.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 272 IEELQQRKEAdLKAQlART----QKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSEL 347
Cdd:COG1196 195 LGELERQLEP-LERQ-AEKaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 348 ASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAmETLQEKSQ 427
Cdd:COG1196 273 RLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELE-EELEEAEE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 428 HKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQvhsmdgakgwfe 507
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL------------ 419
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 569008852 508 RRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEV 574
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
276-618 |
3.88e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 3.88e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 276 QQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQgerlEHAAALRALQDQIQTaktqelnmLREQTSELASELQHRQ 355
Cdd:TIGR02168 220 AELRELELALLVLRLEELREELEELQEELKEAEEELE----ELTAELQELEEKLEE--------LRLEVSELEEEIEELQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 356 AEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAV 435
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 436 RLRHEKeLLGVRARYERELRELHEdKKRQEEELRGQIREEKARtreLENLQHTVEELQAQVhsmdgakgwfERRLKEAEE 515
Cdd:TIGR02168 368 EELESR-LEELEEQLETLRSKVAQ-LELQIASLNNEIERLEAR---LERLEDRRERLQQEI----------EELLKKLEE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 516 SLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVlkdl 595
Cdd:TIGR02168 433 AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV---- 508
|
330 340
....*....|....*....|...
gi 569008852 596 kRQLHLERKRADKLQERLQEILT 618
Cdd:TIGR02168 509 -KALLKNQSGLSGILGVLSELIS 530
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
212-733 |
2.58e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 74.41 E-value: 2.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 212 REEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESfcRLQTEKETLFNDSRNKIEELQQRKEADLK---AQLA 288
Cdd:PTZ00121 1273 KAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA--KKADEAKKKAEEAKKKADAAKKKAEEAKKaaeAAKA 1350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 289 RTQKLQQELEAANQSlAELRDQRQGERLEHAAALRALQDQIQtaKTQELNMLREQTSELASELQHRQAEYE--------- 359
Cdd:PTZ00121 1351 EAEAAADEAEAAEEK-AEAAEKKKEEAKKKADAAKKKAEEKK--KADEAKKKAEEDKKKADELKKAAAAKKkadeakkka 1427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 360 ELMGQKDDLNSQLQESLRANSrlLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQH-KEELGAVRLR 438
Cdd:PTZ00121 1428 EEKKKADEAKKKAEEAKKADE--AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEaKKKADEAKKA 1505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 439 HEKELLGVRARYERELRELHEDKKRQEEELRGQIR--EEKARTRELENlqhtVEELQA--QVHSMDGAKGWFERR---LK 511
Cdd:PTZ00121 1506 AEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKkaEEKKKADELKK----AEELKKaeEKKKAEEAKKAEEDKnmaLR 1581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 512 EAEESLQQQQQEQEETLKLCREEHA--AELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTvDGQRILEKKGS 589
Cdd:PTZ00121 1582 KAEEAKKAEEARIEEVMKLYEEEKKmkAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA-EELKKAEEENK 1660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 590 AVLKDLKRQLHLERKRADKLQERLQEiltnskSRTGLEELVLSEMNSPSRTQTGDSSSVSSFSYREILKEKESSAIPARS 669
Cdd:PTZ00121 1661 IKAAEEAKKAEEDKKKAEEAKKAEED------EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEE 1734
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 569008852 670 LSSSPQAQPPRPAELS-DEEVAELFQRLAETQQEKWMLEEKVKHLEVSSASMAEDLCRKSAIIET 733
Cdd:PTZ00121 1735 AKKEAEEDKKKAEEAKkDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK 1799
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
57-633 |
2.64e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 2.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 57 LRQKVAYLDKEFSKAQK--ALSKSKKAQEVEVLLSENEMLQAKLHSQEEDFRLQNST---LMAEFSKLCSQLEQLELENR 131
Cdd:COG1196 198 LERQLEPLERQAEKAERyrELKEELKELEAELLLLKLRELEAELEELEAELEELEAEleeLEAELAELEAELEELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 132 QLKEgvpgaAGAHVDGELLRLQAENTALQKNMAALQERYGKEAVRpsavgegqgdppgdvlptplapmplaEVELKWEME 211
Cdd:COG1196 278 ELEL-----ELEEAQAEEYELLAELARLEQDIARLEERRRELEER--------------------------LEELEEELA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 212 REEKKLlwEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLKAQLARTQ 291
Cdd:COG1196 327 ELEEEL--EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA-EEELEELAEELLEALRAAAELAAQLE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 292 KLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELmgQKDDLNSQ 371
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA--LLEAALAE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 372 LQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVmLDELAMETLQEksqhKEELGAVRLRHEKELLGVRARYE 451
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGL-AGAVAVLIGVE----AAYEAALEAALAAALQNIVVEDD 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 452 RELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEEtlKLC 531
Cdd:COG1196 557 EVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR--LEA 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 532 REEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQE 611
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
570 580
....*....|....*....|..
gi 569008852 612 RLQEILTNSKSRTGLEELVLSE 633
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREE 736
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
206-504 |
1.49e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 1.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 206 LKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEkLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEAdLKA 285
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEE-LRLEVSELEEEIEELQKELYALANEISRLEQQKQI-LRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 286 QLARtqkLQQELEAANQSLAELRDQRQgerlEHAAALRALQDQIQTAKTqELNMLREQTSELASELQH---RQAEYEELM 362
Cdd:TIGR02168 310 RLAN---LERQLEELEAQLEELESKLD----ELAEELAELEEKLEELKE-ELESLEAELEELEAELEElesRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 363 GQKDDLNSQLQESLRAN----SRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKvmLDELAMEtLQEKSQHKEELGAVRLR 438
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLnneiERLEARLERLEDRRERLQQEIEELLKKLEEAE--LKELQAE-LEELEEELEELQEELER 458
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 569008852 439 HEKELLGVRARYErELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKG 504
Cdd:TIGR02168 459 LEEALEELREELE-EAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILG 523
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
204-511 |
3.45e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 3.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 204 VELKWEMEREEKKLlwEQLQGLESSKQAETSRLQEELAKLSEKLKKKQesfcRLQTEKETLFNDSRNKIEELQQRKEAdL 283
Cdd:TIGR02168 673 LERRREIEELEEKI--EELEEKIAELEKALAELRKELEELEEELEQLR----KELEELSRQISALRKDLARLEAEVEQ-L 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 284 KAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKtQELNMLREQTSELaselqhrQAEYEELMG 363
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK-EELKALREALDEL-------RAELTLLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 364 QKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMET---LQEKSQHKEELGAVRLRHE 440
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELealLNERASLEEALALLRSELE 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 441 KELLGVRA---------RYERELRELHEDKKRQEEELRGQIREEKARTRELENLqhTVEELQAQVHSMDGAKGWFERRLK 511
Cdd:TIGR02168 898 ELSEELREleskrselrRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL--TLEEAEALENKIEDDEEEARRRLK 975
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
201-424 |
1.98e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 1.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 201 LAEVELKWE---MEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQ 277
Cdd:TIGR02168 262 LQELEEKLEelrLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 278 RKE---------ADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQ------ELNMLRE 342
Cdd:TIGR02168 342 LEEkleelkeelESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARlerledRRERLQQ 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 343 QTSELASELQhrQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDelAMETL 422
Cdd:TIGR02168 422 EIEELLKKLE--EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD--SLERL 497
|
..
gi 569008852 423 QE 424
Cdd:TIGR02168 498 QE 499
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
207-481 |
2.29e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.79 E-value: 2.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 207 KWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQ------QRKE 280
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEaeiaslERSI 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 281 ADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKtQELNMLREQTSELASELQHRQAEYEE 360
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK-EELEDLRAELEEVDKEFAETRDELKD 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 361 LMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMEtLQEKSQHKEELGAVRLRHE 440
Cdd:TIGR02169 390 YREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALE-IKKQEWKLEQLAADLSKYE 468
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 569008852 441 KELLGVRARYERELRELHEdKKRQEEELRGQIREEKARTRE 481
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSK-LQRELAEAEAQARASEERVRG 508
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
267-612 |
4.50e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.02 E-value: 4.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 267 DSRNKIEELQQR-KEADLKAQLARTQ--KLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAkTQELNMLREQ 343
Cdd:TIGR02169 174 KALEELEEVEENiERLDLIIDEKRQQleRLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAI-ERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 344 TSELASELQHRQAEYEELMGQKDDLNSQLQ-----ESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKvMLDELA 418
Cdd:TIGR02169 253 LEKLTEEISELEKRLEEIEQLLEELNKKIKdlgeeEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA-KLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 419 METLQEKSQHKEELGAVRLRHEK---ELLGVRARYERELRELHEdkkrQEEELRGQIREEKARTRELENLQHTVEELQAQ 495
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDKlteEYAELKEELEDLRAELEE----VDKEFAETRDELKDYREKLEKLKREINELKRE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 496 vhsmdgakgwfERRLKEAEESLQQQQQEQEETLKLCREEHA---AELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQ 572
Cdd:TIGR02169 408 -----------LDRLQEELQRLSEELADLNAAIAGIEAKINeleEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 569008852 573 EvkdtvdgQRILEKKgsavLKDLKRQLHLERKRADKLQER 612
Cdd:TIGR02169 477 E-------YDRVEKE----LSKLQRELAEAEAQARASEER 505
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
53-482 |
1.64e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 1.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 53 ELSSLRQKVAYLdkefskAQKALSKSKKAQEVEVLLSENEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQ 132
Cdd:TIGR02168 678 EIEELEEKIEEL------EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 133 LkegvpgaagahvDGELLRLQAENTALQKNMAALQERygkeavrpsavgegqgdppgdvlptplapmpLAEVELKWEMER 212
Cdd:TIGR02168 752 L------------SKELTELEAEIEELEERLEEAEEE-------------------------------LAEAEAEIEELE 788
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 213 EEKKLLWEQLQGLES---SKQAETSRLQEELAKLSEKLKKKQesfcRLQTEKETLFNDSRNKIEELQQRkEADLKAQLAR 289
Cdd:TIGR02168 789 AQIEQLKEELKALREaldELRAELTLLNEEAANLRERLESLE----RRIAATERRLEDLEEQIEELSED-IESLAAEIEE 863
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 290 TQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKtQELNMLREQTSELASELQHRQAEYEELMGQKDDLN 369
Cdd:TIGR02168 864 LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE-SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ 942
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 370 SQLQESLRANsrlleqLQEIGQEKEQLTQDLQEARKSAEKrkvmldelametLQEKsqhKEELGAVRLRHEKELLGVRAR 449
Cdd:TIGR02168 943 ERLSEEYSLT------LEEAEALENKIEDDEEEARRRLKR------------LENK---IKELGPVNLAAIEEYEELKER 1001
|
410 420 430
....*....|....*....|....*....|...
gi 569008852 450 YErELRELHEDKKRQEEELRGQIREEKARTREL 482
Cdd:TIGR02168 1002 YD-FLTAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
53-616 |
2.47e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 2.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 53 ELSSLRQKVAYLDKEFSKAQKALSKsKKAQEVEVLLSENEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQ 132
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELE-AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 133 LKEGVpgaagAHVDGELLRLQAENTALQKNMAALQERYGKEAVRPSAvgegqgdppgdvlptplapmpLAEVELKWEMER 212
Cdd:COG1196 300 LEQDI-----ARLEERRRELEERLEELEEELAELEEELEELEEELEE---------------------LEEELEEAEEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 213 EEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESfcrlQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQK 292
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA----AAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 293 LQQELEAANQSLAELRDQRQgERLEHAAALRALQDQIQTAKTQELNmLREQTSELASELQHRQAEYEELMGQKDDLNSQL 372
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAE-EEAELEEEEEALLELLAELLEEAAL-LEAALAELLEELAEAAARLLLLLEAEADYEGFL 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 373 QESLRA-----NSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAME--------------TLQEKSQHKEELG 433
Cdd:COG1196 508 EGVKAAlllagLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAaaieylkaakagraTFLPLDKIRARAA 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 434 AVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDG--AKGWFERRLK 511
Cdd:COG1196 588 LAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGgsAGGSLTGGSR 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 512 EAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAV 591
Cdd:COG1196 668 RELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEEL 747
|
570 580
....*....|....*....|....*
gi 569008852 592 LKDLKRQLHLERKRADKLQERLQEI 616
Cdd:COG1196 748 LEEEALEELPEPPDLEELERELERL 772
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
269-616 |
3.30e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 3.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 269 RNKIEELqqrkEADLKAQLARTQKLQQELEAANQSLAELRDQrqgerlehaaaLRALQDQIQTaKTQELNMLREQTSELA 348
Cdd:TIGR02168 676 RREIEEL----EEKIEELEEKIAELEKALAELRKELEELEEE-----------LEQLRKELEE-LSRQISALRKDLARLE 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 349 SELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMetlqEKSQH 428
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA----ELTLL 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 429 KEELGAVRLRhEKELLGVRARYERELRELHEDKKRQEEELrgqireeKARTRELENLQHTVEELQAQVHSMDGAKGWFER 508
Cdd:TIGR02168 816 NEEAANLRER-LESLERRIAATERRLEDLEEQIEELSEDI-------ESLAAEIEELEELIEELESELEALLNERASLEE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 509 RLKEAEESLQQQQQEqeetlklcREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVkdTVDGQRILEKKG 588
Cdd:TIGR02168 888 ALALLRSELEELSEE--------LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL--SEEYSLTLEEAE 957
|
330 340
....*....|....*....|....*...
gi 569008852 589 SAVLKDLKRQLHLERkRADKLQERLQEI 616
Cdd:TIGR02168 958 ALENKIEDDEEEARR-RLKRLENKIKEL 984
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
205-615 |
1.10e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.47 E-value: 1.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 205 ELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDS-RNKIEELQQRKEADL 283
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAaKKKAEEKKKADEAKK 1398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 284 KAQLARTQKLQQELEAANQSLAElRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELmg 363
Cdd:PTZ00121 1399 KAEEDKKKADELKKAAAAKKKAD-EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA-- 1475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 364 QKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVmlDELamETLQEKSQHKEELGAVRLRHEKEL 443
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA--DEA--KKAEEAKKADEAKKAEEKKKADEL 1551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 444 LGVRARYERELRELHEDKKRQEEELRGQIRE-------EKARTRELENLQHTVEELQAQvhsmdGAKGWFERRLKEAEES 516
Cdd:PTZ00121 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKaeeakkaEEARIEEVMKLYEEEKKMKAE-----EAKKAEEAKIKAEELK 1626
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 517 LQQQQQEQEETLKLCREEH---AAELKGKDEELQNVREQLQQAQEERDghvKTISNLKQEVKDTVDGQRILEKKGSAVLK 593
Cdd:PTZ00121 1627 KAEEEKKKVEQLKKKEAEEkkkAEELKKAEEENKIKAAEEAKKAEEDK---KKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
|
410 420
....*....|....*....|....
gi 569008852 594 --DLKRQLHLERKRADKLQERLQE 615
Cdd:PTZ00121 1704 aeELKKKEAEEKKKAEELKKAEEE 1727
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
213-596 |
1.61e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.08 E-value: 1.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 213 EEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESfCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQK 292
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE-AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE 1519
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 293 LQQELEAANQS--------LAELRDQRQGERLEHAAALRALQDQI---QTAKTQELNMLREQTSELASELQHRQAE---- 357
Cdd:PTZ00121 1520 EAKKADEAKKAeeakkadeAKKAEEKKKADELKKAEELKKAEEKKkaeEAKKAEEDKNMALRKAEEAKKAEEARIEevmk 1599
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 358 -YEELMGQKDDlNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELgavr 436
Cdd:PTZ00121 1600 lYEEEKKMKAE-EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK---- 1674
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 437 lRHEKELlgvrARYERELRELHEDKKRQEEELRG--QIREEKA-RTRELENLQHTVEELQAQVHSMDgaKGWFERRLKEA 513
Cdd:PTZ00121 1675 -KKAEEA----KKAEEDEKKAAEALKKEAEEAKKaeELKKKEAeEKKKAEELKKAEEENKIKAEEAK--KEAEEDKKKAE 1747
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 514 EESLQQQQQEQEETLKLCREEHAAELKGKDEELqnVREQLQQAQEERDGHV-KTISNLKQEVKDTVDGQrileKKGSAVL 592
Cdd:PTZ00121 1748 EAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV--IEEELDEEDEKRRMEVdKKIKDIFDNFANIIEGG----KEGNLVI 1821
|
....
gi 569008852 593 KDLK 596
Cdd:PTZ00121 1822 NDSK 1825
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
280-500 |
2.56e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.08 E-value: 2.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 280 EADLKAQLARTQKLQQELEAANQSLAELRDQR--------QGERLEHAAALRALQDQIQTA-----KTQELNMLREQTSE 346
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAREQIellepireLAERYAAARERLAELEYLRAAlrlwfAQRRLELLEAELEE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 347 LASELQHRQAEYEELMGQKDDLNSQLQEslransrLLEQLQEI-GQEKEQLTQDLQEARKSAEKRKVMLDELAmetlqek 425
Cdd:COG4913 300 LRAELARLEAELERLEARLDALREELDE-------LEAQIRGNgGDRLEQLEREIERLERELEERERRRARLE------- 365
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 569008852 426 sQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMD 500
Cdd:COG4913 366 -ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIP 439
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
235-491 |
3.19e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.70 E-value: 3.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 235 RLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEAD-----LKAQLARTQKLQQELEAANQSLAELRD 309
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDAL-QERREALQRLAEYSWDEidvasAEREIAELEAELERLDASSDDLAALEE 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 310 QrqgerlehaaaLRALQDQIQTAKtQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRAnsRLLEQLQEI 389
Cdd:COG4913 693 Q-----------LEELEAELEELE-EELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA--LLEERFAAA 758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 390 GQEK--EQLTQDLQEARKSAEKRkvmLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRArYERELRELHEDK-KRQEE 466
Cdd:COG4913 759 LGDAveRELRENLEERIDALRAR---LNRAEEELERAMRAFNREWPAETADLDADLESLPE-YLALLDRLEEDGlPEYEE 834
|
250 260
....*....|....*....|....*
gi 569008852 467 ELRGQIREEKarTRELENLQHTVEE 491
Cdd:COG4913 835 RFKELLNENS--IEFVADLLSKLRR 857
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
235-454 |
2.04e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.39 E-value: 2.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 235 RLQEELAKLS------EKLKKKQESFCRLQTEKETlFNDSRNKIEELQQRKEA-DLKAQLARTQKLQQELEAANQSLAEL 307
Cdd:COG4913 229 ALVEHFDDLErahealEDAREQIELLEPIRELAER-YAAARERLAELEYLRAAlRLWFAQRRLELLEAELEELRAELARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 308 RDQR---QGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLE 384
Cdd:COG4913 308 EAELerlEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRA 387
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 385 QLQEIGQEKEQLTQDLQEARKSAEKRKvmldELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYEREL 454
Cdd:COG4913 388 EAAALLEALEEELEALEEALAEAEAAL----RDLRRELRELEAEIASLERRKSNIPARLLALRDALAEAL 453
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
205-410 |
3.67e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 3.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 205 ELKWEMEREEKKLlwEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLK 284
Cdd:COG4942 31 QLQQEIAELEKEL--AALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL-EKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 285 AQLARTQKL-----------QQELEAANQSLAELRDQRQgERLEHAAALRALQDQIQtAKTQELNMLREQTSELASELQH 353
Cdd:COG4942 108 ELLRALYRLgrqpplalllsPEDFLDAVRRLQYLKYLAP-ARREQAEELRADLAELA-ALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 569008852 354 RQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKR 410
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
205-618 |
4.99e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.97 E-value: 4.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 205 ELKWEMER-EEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETL---FNDSRNKIEELQQRKE 280
Cdd:PRK02224 217 ELDEEIERyEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELaeeVRDLRERLEELEEERD 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 281 ----------ADLKAQLARTQKLQQELEAANQSLAELRdQRQGERLEHAAALRALQDQIQTAKTQelnmLREQTSELASE 350
Cdd:PRK02224 297 dllaeaglddADAEAVEARREELEDRDEELRDRLEECR-VAAQAHNEEAESLREDADDLEERAEE----LREEAAELESE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 351 LQHRQAEYEELMGQKDDLNSQLqESLRA---------------NSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLD 415
Cdd:PRK02224 372 LEEAREAVEDRREEIEELEEEI-EELRErfgdapvdlgnaedfLEELREERDELREREAELEATLRTARERVEEAEALLE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 416 ELA-------------METLQEKSQHKEELGAVRLRHEKELLGVRARYER--ELRELH------EDKKRQEEELRGQIRE 474
Cdd:PRK02224 451 AGKcpecgqpvegsphVETIEEDRERVEELEAELEDLEEEVEEVEERLERaeDLVEAEdrierlEERREDLEELIAERRE 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 475 EKARTRE-LENLQHTVEEL----QAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCR-EEHAAELKGKDEELQN 548
Cdd:PRK02224 531 TIEEKRErAEELRERAAELeaeaEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERiRTLLAAIADAEDEIER 610
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 569008852 549 VREQLQQAQE---ERDGHVKTISNLKQEVKDTVDGQRILEKKGsavlkdlkrqlhlERKRADKLQERLQEILT 618
Cdd:PRK02224 611 LREKREALAElndERRERLAEKRERKRELEAEFDEARIEEARE-------------DKERAEEYLEQVEEKLD 670
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
202-724 |
5.52e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 5.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 202 AEVELKWEMERE-EKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQEsFCRLQTEKETLFNDSRNKIEELQQRKE 280
Cdd:PTZ00121 1202 AEAARKAEEERKaEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEE-IRKFEEARMAHFARRQAAIKAEEARKA 1280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 281 ADLK----AQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQElnmlREQTSELASELQHRQA 356
Cdd:PTZ00121 1281 DELKkaeeKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEE----AKKAAEAAKAEAEAAA 1356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 357 EYEELMGQKDDLNSQLQESLRANSrllEQLQEIGQEKEQltqdLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVR 436
Cdd:PTZ00121 1357 DEAEAAEEKAEAAEKKKEEAKKKA---DAAKKKAEEKKK----ADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE 1429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 437 LRHEKELlgvrARYERELRELHEDKKRQEEELRGQIREEKA-RTRELENLQHTVEELQAQVHSMDGAKgwfERRLKEAEE 515
Cdd:PTZ00121 1430 KKKADEA----KKKAEEAKKADEAKKKAEEAKKAEEAKKKAeEAKKADEAKKKAEEAKKADEAKKKAE---EAKKKADEA 1502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 516 SLQQQQQEQEETLKLCREEHAAELKGKDEELQNVrEQLQQAQEERDG-HVKTISNLK--QEVKDTVDGQRILEKKGSAVL 592
Cdd:PTZ00121 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA-DEAKKAEEKKKAdELKKAEELKkaEEKKKAEEAKKAEEDKNMALR 1581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 593 K-------DLKRQLHLERKRADKLQERLQEILTNSKSRTGLEELVLSEMNSPSRTQTGDSSSVSSFSYREILKEKESSAI 665
Cdd:PTZ00121 1582 KaeeakkaEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 569008852 666 PARSLSSSPQ-----AQPPRPAELSDEEVAELFQRLAETQQEKwmleEKVKHLEVSSASMAEDL 724
Cdd:PTZ00121 1662 KAAEEAKKAEedkkkAEEAKKAEEDEKKAAEALKKEAEEAKKA----EELKKKEAEEKKKAEEL 1721
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
285-496 |
1.38e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.77 E-value: 1.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 285 AQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQiqtakTQELNMLREQTSELASELQHRQAEYEELMGQ 364
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL-----ERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 365 KDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELgavrlrheKELL 444
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADL--------AELA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 569008852 445 GVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQV 496
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL 215
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
277-474 |
1.43e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 1.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 277 QRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQElnMLREQTSELA------SE 350
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAER--EIAELEAELErldassDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 351 LQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKV-MLDELAMETLQEKSQHK 429
Cdd:COG4913 687 LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRaLLEERFAAALGDAVERE 766
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 569008852 430 eelgavrlrhekellgVRARYERELRELHEDKKRQEEELRGQIRE 474
Cdd:COG4913 767 ----------------LRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
245-504 |
2.30e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.68 E-value: 2.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 245 EKLKKKQESFCRLQTEKETLFNDSRNKIEELQQrKEADLKAQLARTQKLQQELEAANQSLAELRDQ---RQGERLEHAAA 321
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINEISS-ELPELREELEKLEKEVKELEELKEEIEELEKElesLEGSKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 322 LRALQDQIQTAKtQELNMLREQTSELaSELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQ 401
Cdd:PRK03918 261 IRELEERIEELK-KEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 402 EARKSAEKRKVMLDELamETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRE 481
Cdd:PRK03918 339 RLEELKKKLKELEKRL--EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGE 416
|
250 260
....*....|....*....|...
gi 569008852 482 LENlqhTVEELQAQVHSMDGAKG 504
Cdd:PRK03918 417 LKK---EIKELKKAIEELKKAKG 436
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
288-475 |
2.71e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 54.57 E-value: 2.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 288 ARTQKLQQELEAANQSLAELrdQRQGERLEH----AAALR-------ALQDQIQTAKtQELNMLREQTSELASELQHRQA 356
Cdd:COG3096 893 DRLEELREELDAAQEAQAFI--QQHGKALAQleplVAVLQsdpeqfeQLQADYLQAK-EQQRRLKQQIFALSEVVQRRPH 969
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 357 ----EYEELMGQKDDLNSQLQESLR----ANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQ----- 423
Cdd:COG3096 970 fsyeDAVGLLGENSDLNEKLRARLEqaeeARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEElgvqa 1049
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 569008852 424 ----------EKSQHKEELGAVRLRhEKELLGVRARYERELRELHEDKKRQEEELRgQIREE 475
Cdd:COG3096 1050 daeaeerariRRDELHEELSQNRSR-RSQLEKQLTRCEAEMDSLQKRLRKAERDYK-QEREQ 1109
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
53-399 |
3.25e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 3.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 53 ELSSLRQKVAYLDKEFSKAQKAL-SKSKKAQEVEVLLSENEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQLEQLELENR 131
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELeELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 132 QLKEGVpgaagAHVDGELLRLQAENTALQKNMAALQERYGKEAVRPSAVGEGQGDPPGDVlptplapmplAEVELKWEME 211
Cdd:TIGR02168 779 EAEAEI-----EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI----------AATERRLEDL 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 212 REEKKLLWEQLQGLESS---KQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLKAQLA 288
Cdd:TIGR02168 844 EEQIEELSEDIESLAAEieeLEELIEELESELEALLNERASLEEALALLRSELEEL-SEELRELESKRSELRRELEELRE 922
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 289 RTQKLQQELEAANQSLAELRDQ---RQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQK 365
Cdd:TIGR02168 923 KLAQLELRLEGLEVRIDNLQERlseEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERY 1002
|
330 340 350
....*....|....*....|....*....|....
gi 569008852 366 DDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQD 399
Cdd:TIGR02168 1003 DFLTAQKEDLTEAKETLEEAIEEIDREARERFKD 1036
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
233-495 |
3.69e-07 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 54.46 E-value: 3.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 233 TSRLQEELAKLSEKLKKKQESFCRLQTEKetlfndsrnKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQ 312
Cdd:NF012221 1537 TSESSQQADAVSKHAKQDDAAQNALADKE---------RAEADRQRLEQEKQQQLAAISGSQSQLESTDQNALETNGQAQ 1607
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 313 GERLEHAAalRALQDQIqTAKTQELNMLREQTSELASELQHRQAEYEElmGQKDDLNSQLQEslrANSRLLEQLQEIgqe 392
Cdd:NF012221 1608 RDAILEES--RAVTKEL-TTLAQGLDALDSQATYAGESGDQWRNPFAG--GLLDRVQEQLDD---AKKISGKQLADA--- 1676
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 393 KEQLTQDLQEARKSAEKRkvmldelamETLQEKSQHKeelgavrlRHEKELLGVRARYERELRELHEDKKRQEEELR--- 469
Cdd:NF012221 1677 KQRHVDNQQKVKDAVAKS---------EAGVAQGEQN--------QANAEQDIDDAKADAEKRKDDALAKQNEAQQAesd 1739
|
250 260
....*....|....*....|....*..
gi 569008852 470 GQIREEKARTR-ELENLQHTVEELQAQ 495
Cdd:NF012221 1740 ANAAANDAQSRgEQDASAAENKANQAQ 1766
|
|
| Rabaptin |
pfam03528 |
Rabaptin; |
238-431 |
7.20e-07 |
|
Rabaptin;
Pssm-ID: 367545 [Multi-domain] Cd Length: 486 Bit Score: 52.80 E-value: 7.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 238 EELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLE 317
Cdd:pfam03528 4 EDLQQRVAELEKENAEFYRLKQQLEAEFNQKRAKFKELYLAKEEDLKRQNAVLQEAQVELDALQNQLALARAEMENIKAV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 318 HAAALRALQDQIQTAKTQelnmLREQTSELASELQHRQAEYE-----ELMGQKDDLNSQLQESLRANSRLLEQLQEiGQE 392
Cdd:pfam03528 84 ATVSENTKQEAIDEVKSQ----WQEEVASLQAIMKETVREYEvqfhrRLEQERAQWNQYRESAEREIADLRRRLSE-GQE 158
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 569008852 393 KEQLTQDLQEARKSAEKRK--VMLDELAMETLQEKSQHKEE 431
Cdd:pfam03528 159 EENLEDEMKKAQEDAEKLRsvVMPMEKEIAALKAKLTEAED 199
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
243-442 |
9.02e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 9.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 243 LSEKLKKKQESFCRLQTEKETLFNDsrnKIEELQQRKEAdLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAAL 322
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLK---ELKELEEELKE-AEEKEEEYAELQEELEELEEELEELEAELEELREELEKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 323 RALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQEslrANSRLLEQLQEIGQEKEQLTQDLQE 402
Cdd:COG4717 123 KLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAE---LQEELEELLEQLSLATEEELQDLAE 199
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 569008852 403 ARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKE 442
Cdd:COG4717 200 ELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
211-491 |
1.18e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 211 EREEKKLLWEQLQGLESSKQAETSRLQEElAKLSEKLKKKQESFCRLQTEK-ETLFNDSRNKIEELQQRKEADLKAQLAR 289
Cdd:PTZ00121 1504 KAAEAKKKADEAKKAEEAKKADEAKKAEE-AKKADEAKKAEEKKKADELKKaEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 290 TQKLQQELEAANQSLAELRDQRQGERLEHA-----AALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQ 364
Cdd:PTZ00121 1583 AEEAKKAEEARIEEVMKLYEEEKKMKAEEAkkaeeAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK 1662
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 365 KDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRkvmldelametlqeKSQHKEELGAVRLRHEKELL 444
Cdd:PTZ00121 1663 AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELK--------------KKEAEEKKKAEELKKAEEEN 1728
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 569008852 445 GVRAryeRELRELHEDKKRQEEELRGQiREEKARTRELENLQHTVEE 491
Cdd:PTZ00121 1729 KIKA---EEAKKEAEEDKKKAEEAKKD-EEEKKKIAHLKKEEEKKAE 1771
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
203-635 |
1.35e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.28 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 203 EVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfndsrnkieELQQRKEAD 282
Cdd:TIGR00618 191 SLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQ---------EEQLKKQQL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 283 LKAQLARTQKLQQELEAANQSLAELRDQRQGERL-EHAAALRALQDQIQTAKTQelnmLREQTSELASELQHRQA--EYE 359
Cdd:TIGR00618 262 LKQLRARIEELRAQEAVLEETQERINRARKAAPLaAHIKAVTQIEQQAQRIHTE----LQSKMRSRAKLLMKRAAhvKQQ 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 360 ELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETlQEKSQHKEELGAVRLRH 439
Cdd:TIGR00618 338 SSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLC-KELDILQREQATIDTRT 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 440 --EKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESL 517
Cdd:TIGR00618 417 saFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARL 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 518 QQQQQEQEETLKLCREEHAAE--------LKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGS 589
Cdd:TIGR00618 497 LELQEEPCPLCGSCIHPNPARqdidnpgpLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILT 576
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 569008852 590 AVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGLEELVLSEMN 635
Cdd:TIGR00618 577 QCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQ 622
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
213-610 |
1.62e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 1.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 213 EEKKLLWEQLQGLESsKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfndsrnkieelqqRKEADLKAQLARTQK 292
Cdd:COG4717 71 KELKELEEELKEAEE-KEEEYAELQEELEELEEELEELEAELEELREELEKL-------------EKLLQLLPLYQELEA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 293 LQQELEAANQSLAELRDQRQgERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQL 372
Cdd:COG4717 137 LEAELAELPERLEELEERLE-ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 373 Q------ESLRANSRLLEQLQEIGQEKEQLTQDLQEAR------------KSAEKRKVMLDELAM-----------ETLQ 423
Cdd:COG4717 216 EeaqeelEELEEELEQLENELEAAALEERLKEARLLLLiaaallallglgGSLLSLILTIAGVLFlvlgllallflLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 424 EKSQHKEELGAVRLRHEKELLgVRARYERELRELHEDKKRQEEELRGQIR------------EEKARTRELENLQHTVEE 491
Cdd:COG4717 296 EKASLGKEAEELQALPALEEL-EEEELEELLAALGLPPDLSPEELLELLDrieelqellreaEELEEELQLEELEQEIAA 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 492 L--QAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKD---EELQNVREQLQQAQEERDGHVKT 566
Cdd:COG4717 375 LlaEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEeleEELEELEEELEELEEELEELREE 454
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 569008852 567 ISNLKQEVKDTVDGQRILEKKgsAVLKDLKRQLHLERKRADKLQ 610
Cdd:COG4717 455 LAELEAELEQLEEDGELAELL--QELEELKAELRELAEEWAALK 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
53-616 |
3.57e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 3.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 53 ELSSLRQKVAYLDKEFSKAQKALSKskKAQEVEVLLSENEMLQAKLHSQEEDF---RLQNSTLMAEFSKLCSQLEQLELE 129
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEE--LEAELEELESRLEELEEQLETLRSKVaqlELQIASLNNEIERLEARLERLEDR 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 130 NRQLKEGVPGAAGAHVDGELLRLQAENTALQKNMAALQERY----------------GKEAVRPSAVGEGQGDPPGDVLP 193
Cdd:TIGR02168 416 RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELerleealeelreeleeAEQALDAAERELAQLQARLDSLE 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 194 TPL-APMPLAEVELKWEMEREEKK----LLWEQLQGLESSKQA-ET---SRLQEELAKLSEKLKK-----KQESFCRLQT 259
Cdd:TIGR02168 496 RLQeNLEGFSEGVKALLKNQSGLSgilgVLSELISVDEGYEAAiEAalgGRLQAVVVENLNAAKKaiaflKQNELGRVTF 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 260 EKETLFNDSRNKIEELQQRKEADLKAQLA-RTQKLQQELEAANQSLaeLRDQRQGERLEHAAALRALQDQIQTAKTQELN 338
Cdd:TIGR02168 576 LPLDSIKGTEIQGNDREILKNIEGFLGVAkDLVKFDPKLRKALSYL--LGGVLVVDDLDNALELAKKLRPGYRIVTLDGD 653
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 339 MLRE------QTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARksaekRKV 412
Cdd:TIGR02168 654 LVRPggvitgGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS-----RQI 728
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 413 MLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEEL 492
Cdd:TIGR02168 729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDEL 808
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 493 QAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEET------LKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKT 566
Cdd:TIGR02168 809 RAELTLLNEEAANLRERLESLERRIAATERRLEDLeeqieeLSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 569008852 567 ISNLKQEVKDTVDGQRILEKKgsavLKDLKRQLHLERKRADKLQERLQEI 616
Cdd:TIGR02168 889 LALLRSELEELSEELRELESK----RSELRRELEELREKLAQLELRLEGL 934
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
275-496 |
4.37e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.40 E-value: 4.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 275 LQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHR 354
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 355 QAEYEELMGQKDDLNSQLQESlRANSRLLEQLQEIGQEKEQLTQDLQEarksaekrkvmlDELAMETLQeksqhkEELGA 434
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQS-PVIQQLRAQLAELEAELAELSARYTP------------NHPDVIALR------AQIAA 302
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 569008852 435 VRLRHEKELLGVRARYERELRELhedkKRQEEELRGQIREEKARTRELENLQHTVEELQAQV 496
Cdd:COG3206 303 LRAQLQQEAQRILASLEAELEAL----QAREASLQAQLAQLEARLAELPELEAELRRLEREV 360
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
205-483 |
4.88e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 4.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 205 ELKWEMEREEKKLlweqlqgleSSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKEtlfndsrNKIEELQqRKEADLK 284
Cdd:TIGR02169 706 ELSQELSDASRKI---------GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE-------NVKSELK-ELEARIE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 285 AQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQ 364
Cdd:TIGR02169 769 ELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ 848
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 365 KDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDEL--AMETLQEKSQHKEELGAVRLRHEKE 442
Cdd:TIGR02169 849 IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELerKIEELEAQIEKKRKRLSELKAKLEA 928
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 569008852 443 LLGVRARYERELRELHEDKKRQ--EEELRGQIREEKARTRELE 483
Cdd:TIGR02169 929 LEEELSEIEDPKGEDEEIPEEElsLEDVQAELQRVEEEIRALE 971
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
388-641 |
5.45e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 5.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 388 EIGQEKEQLTQDLQEARKSAEKRKVMLDELA--METLQEKSQHKEELGAVRLRHEkellgvraryERELRELHEDKKRQE 465
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRqqLERLRREREKAERYQALLKEKR----------EYEGYELLKEKEALE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 466 EELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEE 545
Cdd:TIGR02169 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 546 LQNVREQLQQAQEERDGHVKTISNLKQEVKDtvdgQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTG 625
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEE----ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
250
....*....|....*.
gi 569008852 626 LEELVLSEMNSPSRTQ 641
Cdd:TIGR02169 393 KLEKLKREINELKREL 408
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
195-494 |
6.37e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 6.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 195 PLAPMPLAEVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQE--ELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKI 272
Cdd:PRK02224 460 PVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDlvEAEDRIERLEERREDLEELIAERRETIEEKRERA 539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 273 EELQQRK---EADLKAQLARTQKLQQELEAANQSLAELRDQRQ--GERLEHAAALRALQDQIqTAKTQELNMLREQTSEL 347
Cdd:PRK02224 540 EELRERAaelEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAelKERIESLERIRTLLAAI-ADAEDEIERLREKREAL 618
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 348 AselqhrqaeyeelmgqkdDLNSQLQEslransrlleQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQ 427
Cdd:PRK02224 619 A------------------ELNDERRE----------RLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLD 670
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 569008852 428 HKEElgavrlrHEKELLGVRARYERELRELhedkkrqeEELRGQIREEKARTRELENLQHTVEELQA 494
Cdd:PRK02224 671 ELRE-------ERDDLQAEIGAVENELEEL--------EELRERREALENRVEALEALYDEAEELES 722
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
209-728 |
6.77e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 6.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 209 EMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSE----KLKKKQESFCRLQ----TEKETLFNDSRNKIE------- 273
Cdd:PTZ00121 1114 ARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDakrvEIARKAEDARKAEearkAEDAKKAEAARKAEEvrkaeel 1193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 274 ---------ELQQRKEADLKAQLARTQKLQQELEA---ANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLR 341
Cdd:PTZ00121 1194 rkaedarkaEAARKAEEERKAEEARKAEDAKKAEAvkkAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIK 1273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 342 EQTSELASELQH-------RQAEYEELMGQKDDLNSQLQESLRANsRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVML 414
Cdd:PTZ00121 1274 AEEARKADELKKaeekkkaDEAKKAEEKKKADEAKKKAEEAKKAD-EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEA 1352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 415 DELAMETlqEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRG--QIREEKARTRELENLQHTVEEL 492
Cdd:PTZ00121 1353 EAAADEA--EAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKadELKKAAAAKKKADEAKKKAEEK 1430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 493 QA---------QVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREE--HAAELKGKDEELQNVREQLQQAQEERD 561
Cdd:PTZ00121 1431 KKadeakkkaeEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEakKADEAKKKAEEAKKKADEAKKAAEAKK 1510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 562 ghvKTISNLKQEVKDTVDGQRILEKKGSAvlKDLKRQlhLERKRADKLQeRLQEILTNSKSRTGLEELVLSEMNSPSRTQ 641
Cdd:PTZ00121 1511 ---KADEAKKAEEAKKADEAKKAEEAKKA--DEAKKA--EEKKKADELK-KAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 642 TGDSSSVSSFSYREILK-EKESSAIPARSLSSSPQAQPPRPAELSDEEVAELFQRLAETQQEKWMLEEKVKHLEVSSASM 720
Cdd:PTZ00121 1583 AEEAKKAEEARIEEVMKlYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK 1662
|
....*...
gi 569008852 721 AEDLCRKS 728
Cdd:PTZ00121 1663 AAEEAKKA 1670
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
319-589 |
9.42e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 9.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 319 AAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQ 398
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 399 DLQEARKSAEKRKVMLDELaMETLQEKSQHKEELGAVRLRHEKELLgVRARYereLRELHEDKKRQEEELRGQIREEKAR 478
Cdd:COG4942 91 EIAELRAELEAQKEELAEL-LRALYRLGRQPPLALLLSPEDFLDAV-RRLQY---LKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 479 TRELENLQHTVEELQAQVhsmdgakgwferrlkeaeeslqQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQE 558
Cdd:COG4942 166 RAELEAERAELEALLAEL----------------------EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE 223
|
250 260 270
....*....|....*....|....*....|.
gi 569008852 559 ERDGHVKTISNLKQEVKDTVDGQRILEKKGS 589
Cdd:COG4942 224 ELEALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
201-621 |
1.90e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.43 E-value: 1.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 201 LAEVELKWEMEREEKKLLWEQLQGLESSKQAEtsRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKE 280
Cdd:TIGR00618 262 LKQLRARIEELRAQEAVLEETQERINRARKAA--PLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSS 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 281 ADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQE--LNMLREQTSELASELQHRQAEY 358
Cdd:TIGR00618 340 IEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLqsLCKELDILQREQATIDTRTSAF 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 359 EELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEElGAVRLR 438
Cdd:TIGR00618 420 RDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVV-LARLLE 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 439 HEKEllgvraRYERELRELHEDKKRQeeelrgQIREEKARTRELENLQHTVEELQAQVHSMDGaKGWFERRLKEAEESLQ 518
Cdd:TIGR00618 499 LQEE------PCPLCGSCIHPNPARQ------DIDNPGPLTRRMQRGEQTYAQLETSEEDVYH-QLTSERKQRASLKEQM 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 519 QQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQ 598
Cdd:TIGR00618 566 QEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKL 645
|
410 420
....*....|....*....|...
gi 569008852 599 LHLERKRADKLQERLQEILTNSK 621
Cdd:TIGR00618 646 TALHALQLTLTQERVREHALSIR 668
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
213-616 |
2.09e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.09 E-value: 2.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 213 EEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQ---ESFCRLQTEKETLFNDSRNKIEELQQRKEAD----LKA 285
Cdd:TIGR04523 235 EKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQkelEQNNKKIKELEKQLNQLKSEISDLNNQKEQDwnkeLKS 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 286 QLARTQK----LQQELEAANQSLAELRDQRQGERLEhaaaLRALQDQIQTaKTQELNMLREQTSELASELQHRQAEYEEL 361
Cdd:TIGR04523 315 ELKNQEKkleeIQNQISQNNKIISQLNEQISQLKKE----LTNSESENSE-KQRELEEKQNEIEKLKKENQSYKQEIKNL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 362 MGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKeELGAVRLRHEK 441
Cdd:TIGR04523 390 ESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIK-NLDNTRESLET 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 442 ELlgvrARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMdgakgwferrlkeaeeslqqqq 521
Cdd:TIGR04523 469 QL----KVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSL---------------------- 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 522 QEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQ--EERDGHVKTISNLKQEVKDTVDGQRILE---KKGSAVLKDLK 596
Cdd:TIGR04523 523 KEKIEKLESEKKEKESKISDLEDELNKDDFELKKENleKEIDEKNKEIEELKQTQKSLKKKQEEKQeliDQKEKEKKDLI 602
|
410 420
....*....|....*....|
gi 569008852 597 RQLHLERKRADKLQERLQEI 616
Cdd:TIGR04523 603 KEIEEKEKKISSLEKELEKA 622
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
235-496 |
2.55e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.03 E-value: 2.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 235 RLQEELAKLSEKLKKKQESFCRLQTEKEtlfnDSRNKIEELQQRKEaDLKAQLARTQK---LQQ----ELEAANQSLAEL 307
Cdd:PRK04863 352 RYQADLEELEERLEEQNEVVEEADEQQE----ENEARAEAAEEEVD-ELKSQLADYQQaldVQQtraiQYQQAVQALERA 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 308 RDQRQGERLEHAAA---LRALQDQIQTAkTQELNMLrEQTSELASEL--QHRQAeYEELMGQKDDLN-SQLQESLRANSR 381
Cdd:PRK04863 427 KQLCGLPDLTADNAedwLEEFQAKEQEA-TEELLSL-EQKLSVAQAAhsQFEQA-YQLVRKIAGEVSrSEAWDVARELLR 503
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 382 LLEQLQEIGQEKEQLTQDLQEARKSAEKRKV---MLDELAMEtLQEKSQHKEELGAVRLRHEKELLGVRArYERELRELH 458
Cdd:PRK04863 504 RLREQRHLAEQLQQLRMRLSELEQRLRQQQRaerLLAEFCKR-LGKNLDDEDELEQLQEELEARLESLSE-SVSEARERR 581
|
250 260 270
....*....|....*....|....*....|....*...
gi 569008852 459 EDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQV 496
Cdd:PRK04863 582 MALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQS 619
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
228-404 |
2.77e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.70 E-value: 2.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 228 SKQAETSR----LQEELAKLSEKLKKKQESFCRLQTEKETL-----FNDSRNKIEELQQRKeADLKAQLARTQKLQQELE 298
Cdd:COG3206 168 LRREEARKalefLEEQLPELRKELEEAEAALEEFRQKNGLVdlseeAKLLLQQLSELESQL-AEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 299 A-------------ANQSLAELRDQRQGERLEHAA----------ALRALQDQIQTAKTQELNMLREQTSELASELQHRQ 355
Cdd:COG3206 247 AqlgsgpdalpellQSPVIQQLRAQLAELEAELAElsarytpnhpDVIALRAQIAALRAQLQQEAQRILASLEAELEALQ 326
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 569008852 356 AEYEELMGQKDDLNSQLQESLRANSRL--LEQLQEIGQEK-EQLTQDLQEAR 404
Cdd:COG3206 327 AREASLQAQLAQLEARLAELPELEAELrrLEREVEVARELyESLLQRLEEAR 378
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
205-614 |
3.94e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.34 E-value: 3.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 205 ELKWEMEREEKKLLWEQLQGLESSKQAEtsRLQEELAKLSEKLKKKQESFCRLQTEKETL---FNDSRNKIEELQQRKEa 281
Cdd:PRK02224 318 ELEDRDEELRDRLEECRVAAQAHNEEAE--SLREDADDLEERAEELREEAAELESELEEAreaVEDRREEIEELEEEIE- 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 282 DLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTqelnmLRE-----------QTSELASE 350
Cdd:PRK02224 395 ELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEA-----LLEagkcpecgqpvEGSPHVET 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 351 LQHRQAEYEELMGQKDDLNSQlQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAmETLQEKSQHKE 430
Cdd:PRK02224 470 IEEDRERVEELEAELEDLEEE-VEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKR-ERAEELRERAA 547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 431 ELGAVRLRHEKELLGVRARYERELRELHEDKKRqeeelRGQIREEKARTRELENLQHTVEELQAQVhsmdgakgwfeRRL 510
Cdd:PRK02224 548 ELEAEAEEKREAAAEAEEEAEEAREEVAELNSK-----LAELKERIESLERIRTLLAAIADAEDEI-----------ERL 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 511 KEAEESLQQQQQEQEETLKLCREEH---AAELKGKD-EELQNVREQLQQAQEERDGHVKTisnlKQEVKDTvdgqriLEK 586
Cdd:PRK02224 612 REKREALAELNDERRERLAEKRERKrelEAEFDEARiEEAREDKERAEEYLEQVEEKLDE----LREERDD------LQA 681
|
410 420
....*....|....*....|....*...
gi 569008852 587 KGSAVLKDLKRQLHLeRKRADKLQERLQ 614
Cdd:PRK02224 682 EIGAVENELEELEEL-RERREALENRVE 708
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
257-560 |
4.18e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.43 E-value: 4.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 257 LQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSlaelrdqRQGErLEHAAALRALQDQIQTAKTQE 336
Cdd:pfam17380 278 VQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKA-------RQAE-MDRQAAIYAEQERMAMERERE 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 337 LNMLREQTSELASElQHRQAEYEELMGQKddlnsqlqeslransRLLEQLQ-EIGQEKEQLTQDLQEARK-----SAEKR 410
Cdd:pfam17380 350 LERIRQEERKRELE-RIRQEEIAMEISRM---------------RELERLQmERQQKNERVRQELEAARKvkileEERQR 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 411 KVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELR----GQIREEKARTRELENLQ 486
Cdd:pfam17380 414 KIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERkrkkLELEKEKRDRKRAEEQR 493
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 569008852 487 HTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGkdEELQNVREQLQQAQEER 560
Cdd:pfam17380 494 RKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEM--EERRRIQEQMRKATEER 565
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
230-480 |
5.21e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 5.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 230 QAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfndsRNKIEELQQRKeadLKAQLARTQKLQQELEAANQSLaelrD 309
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDAL----REELDELEAQI---RGNGGDRLEQLEREIERLEREL----E 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 310 QRQGERLEHAAALRALQDQIQTAKtQELNMLREQTSELASELQHRQAEYEElmgQKDDLNSQLQESLRANSRLLEQLQEI 389
Cdd:COG4913 356 ERERRRARLEALLAALGLPLPASA-EEFAALRAEAAALLEALEEELEALEE---ALAEAEAALRDLRRELRELEAEIASL 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 390 GQEKEQLTQDLQEARKS-AEKRKVMLDEL--AMETLQEKSQHKEELGAVrlrhEKELLG------VRARYERELRELHED 460
Cdd:COG4913 432 ERRKSNIPARLLALRDAlAEALGLDEAELpfVGELIEVRPEEERWRGAI----ERVLGGfaltllVPPEHYAAALRWVNR 507
|
250 260
....*....|....*....|
gi 569008852 461 KKrqeeeLRGQIREEKARTR 480
Cdd:COG4913 508 LH-----LRGRLVYERVRTG 522
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
201-590 |
5.78e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.98 E-value: 5.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 201 LAEVELKWEMEREEKKLLWEQLQGLES--SKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQR 278
Cdd:PRK03918 309 LREIEKRLSRLEEEINGIEERIKELEEkeERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEK 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 279 KEADLKAQLARTQKLQQELEAANQSLAELRdQRQGERLEHAAALRALQDQIQTAKTQ-----ELNMLREQTSELA---SE 350
Cdd:PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELK-KEIKELKKAIEELKKAKGKCPVCGRElteehRKELLEEYTAELKrieKE 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 351 LQHRQAEYEELMGQKDDLNSQL--QESLRANSRLLEQLQEIGQEKEQLT-QDLQEARKSAEKRKVMLDELAME--TLQEK 425
Cdd:PRK03918 468 LKEIEEKERKLRKELRELEKVLkkESELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEikSLKKE 547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 426 SQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIRE--------------EKARTRELENLQHTVEE 491
Cdd:PRK03918 548 LEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKElepfyneylelkdaEKELEREEKELKKLEEE 627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 492 LQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQeerdghvKTISNLK 571
Cdd:PRK03918 628 LDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIK-------KTLEKLK 700
|
410
....*....|....*....
gi 569008852 572 QEVKDTVDGQRILEKKGSA 590
Cdd:PRK03918 701 EELEEREKAKKELEKLEKA 719
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
205-617 |
8.63e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.17 E-value: 8.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 205 ELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELaKLSeKLKKKQESFCRLQTEKETL---FNDSRNKIEELQQRKEa 281
Cdd:TIGR04523 166 KQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLEL-LLS-NLKKKIQKNKSLESQISELkkqNNQLKDNIEKKQQEIN- 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 282 DLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEEl 361
Cdd:TIGR04523 243 EKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEK- 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 362 mgQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELametLQEKSQHKEELgaVRLRHEK 441
Cdd:TIGR04523 322 --KLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKL----KKENQSYKQEI--KNLESQI 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 442 ELLgvraryERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFE------RRLKEAEE 515
Cdd:TIGR04523 394 NDL------ESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKEliiknlDNTRESLE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 516 SLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDL 595
Cdd:TIGR04523 468 TQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDEL 547
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 569008852 596 KR----------------------QLHLERKRADKLQERLQEIL 617
Cdd:TIGR04523 548 NKddfelkkenlekeideknkeieELKQTQKSLKKKQEEKQELI 591
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
205-498 |
1.52e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 205 ELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQEsfcrlqteKETLFNDSRNKIEELQQRKEADLK 284
Cdd:pfam02463 214 QLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIE--------KEEEKLAQVLKENKEEEKEKKLQE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 285 AQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEyEELMGQ 364
Cdd:pfam02463 286 EELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEE-EELEKL 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 365 KDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELL 444
Cdd:pfam02463 365 QEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQG 444
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 569008852 445 GVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHS 498
Cdd:pfam02463 445 KLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEER 498
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
269-495 |
1.60e-04 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 45.40 E-value: 1.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 269 RNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQ-----------RQGERLEHAAALRALQDQIQTAKTQEL 337
Cdd:pfam05667 242 KRKRTKLLKRIAEQLRSAALAGTEATSGASRSAQDLAELLSSfsgssttdtglTKGSRFTHTEKLQFTNEAPAATSSPPT 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 338 NMLREQTSElaselQHRQAEYEELMGQKDDLNS---QLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVML 414
Cdd:pfam05667 322 KVETEEELQ-----QQREEELEELQEQLEDLESsiqELEKEIKKLESSIKQVEEELEELKEQNEELEKQYKVKKKTLDLL 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 415 --DELAMETLQEK----SQHKEELGAVRLRHEKELLgvrARYeRELRELHEDKKRQEEELRGQIREEKARTRELENLQHT 488
Cdd:pfam05667 397 pdAEENIAKLQALvdasAQRLVELAGQWEKHRVPLI---EEY-RALKEAKSNKEDESQRKLEEIKELREKIKEVAEEAKQ 472
|
....*..
gi 569008852 489 VEELQAQ 495
Cdd:pfam05667 473 KEELYKQ 479
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
227-427 |
1.62e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 227 SSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKetlfNDSRNKIEELQQRKEAdLKAQLArtqKLQQELEAANQSLAE 306
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEY----NELQAELEALQAEIDK-LQAEIA---EAEAEIEERREELGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 307 -LRD-QRQGERLEHAAAL---RALQDQIQTAKTqeLNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSR 381
Cdd:COG3883 91 rARAlYRSGGSVSYLDVLlgsESFSDFLDRLSA--LSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEA 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 569008852 382 LLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQ 427
Cdd:COG3883 169 AKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
89-633 |
2.65e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 89 SENEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQLKEGVPGAAgAHVDGELLRLQAENTALQKNmaalQE 168
Cdd:pfam15921 292 SQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKI-EELEKQLVLANSELTEARTE----RD 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 169 RYGKEAvrpsavgeGQGDppgDVLPTPLAPMPLAEVELkwEMEREEKKLLWEQLQGLESSKQAETSRLQE---ELAKLsE 245
Cdd:pfam15921 367 QFSQES--------GNLD---DQLQKLLADLHKREKEL--SLEKEQNKRLWDRDTGNSITIDHLRRELDDrnmEVQRL-E 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 246 KLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAElrDQRQGERLehAAALRAL 325
Cdd:pfam15921 433 ALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLES--SERTVSDL--TASLQEK 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 326 QDQIQtAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSqLQESLRANSRLLEQLQeigQEKEQLTQDLQEARK 405
Cdd:pfam15921 509 ERAIE-ATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEA-LKLQMAEKDKVIEILR---QQIENMTQLVGQHGR 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 406 SAEKRKVmldelametlqEKSQHKEELGAVRLRHeKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENL 485
Cdd:pfam15921 584 TAGAMQV-----------EKAQLEKEINDRRLEL-QEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDI 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 486 QHTVEELQAQVHSMDGAKGwferRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLqQAQEERDGH-V 564
Cdd:pfam15921 652 KQERDQLLNEVKTSRNELN----SLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTL-KSMEGSDGHaM 726
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 569008852 565 KTISNLKQEV---KDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGLEELVLSE 633
Cdd:pfam15921 727 KVAMGMQKQItakRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQ 798
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
220-408 |
2.71e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 220 EQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLKAQLARTQK------- 292
Cdd:COG3883 26 SELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKL-QAEIAEAEAEIEERREELGERARALYRsggsvsy 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 293 LQQELEAanQSLAELRDQ---------RQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASElqhrQAEYEELMG 363
Cdd:COG3883 105 LDVLLGS--ESFSDFLDRlsalskiadADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA----KAELEAQQA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 569008852 364 QKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAE 408
Cdd:COG3883 179 EQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAA 223
|
|
| DUF4686 |
pfam15742 |
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ... |
204-442 |
2.76e-04 |
|
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.
Pssm-ID: 464838 [Multi-domain] Cd Length: 384 Bit Score: 44.28 E-value: 2.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 204 VELKWEMEREEKKLLweQLQGLESSKQAETSRLQE-------ELAKLSEKLKKKQESFCRLQTEKETLFnDSRNKIEELQ 276
Cdd:pfam15742 58 IKIKAELKQAQQKLL--DSTKMCSSLTAEWKHCQQkirelelEVLKQAQSIKSQNSLQEKLAQEKSRVA-DAEEKILELQ 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 277 QRKEADLKAQLA-----RTQKLQQELEAANQSLAELRDQRQGERLEhaaalRALQDQIQTAKTQELNMLREQTSELA--- 348
Cdd:pfam15742 135 QKLEHAHKVCLTdtcilEKKQLEERIKEASENEAKLKQQYQEEQQK-----RKLLDQNVNELQQQVRSLQDKEAQLEmtn 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 349 SELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSaekrkvmLDELAMETLQEKSQH 428
Cdd:pfam15742 210 SQQQLRIQQQEAQLKQLENEKRKSDEHLKSNQELSEKLSSLQQEKEALQEELQQVLKQ-------LDVHVRKYNEKHHHH 282
|
250
....*....|....
gi 569008852 429 KEELGAVRLRHEKE 442
Cdd:pfam15742 283 KAKLRRAKDRLVHE 296
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
262-502 |
3.34e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 3.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 262 ETLFNDSRNKIEELQQrKEADLKAQLArtqKLQQELEAANQSLAELRDQRQGERlehaAALRALQDQIQTAKtQELNMLR 341
Cdd:COG3883 15 DPQIQAKQKELSELQA-ELEAAQAELD---ALQAELEELNEEYNELQAELEALQ----AEIDKLQAEIAEAE-AEIEERR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 342 EQTSELASELQHRQAEY---EELMGQKD--DLNSQ---LQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVM 413
Cdd:COG3883 86 EELGERARALYRSGGSVsylDVLLGSESfsDFLDRlsaLSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 414 LDELAMETLQEKSQHKEELgavrlrheKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQ 493
Cdd:COG3883 166 LEAAKAELEAQQAEQEALL--------AQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAA 237
|
....*....
gi 569008852 494 AQVHSMDGA 502
Cdd:COG3883 238 AAAAAAASA 246
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
41-395 |
5.03e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 5.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 41 RLRLRFPAFPAPELSSLRQKVAYLDKEFSKAQKALSKSKkaQEVEVLLSENEMLQAKLhsqeEDFRLQNSTLMAEFSKLC 120
Cdd:TIGR02169 663 RGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIE--NRLDELSQELSDASRKI----GEIEKEIEQLEQEEEKLK 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 121 SQLEQLELENRQLKEGVPGAAG--AHVDGELLRLQAENTALQKNMAALQERYGKEAVRPSavgEGQGDPPGDVLPTPLAP 198
Cdd:TIGR02169 737 ERLEELEEDLSSLEQEIENVKSelKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEI---QAELSKLEEEVSRIEAR 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 199 MPLAEVELK--------WEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRN 270
Cdd:TIGR02169 814 LREIEQKLNrltlekeyLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDE 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 271 KIEEL--QQRKEADLKAQLARTQKLQQEL----EAANQSLAELRDQRQG--ERLEHAAALRALQDQIQtAKTQELNMLrE 342
Cdd:TIGR02169 894 LEAQLreLERKIEELEAQIEKKRKRLSELkaklEALEEELSEIEDPKGEdeEIPEEELSLEDVQAELQ-RVEEEIRAL-E 971
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 569008852 343 QTSELASElqhrqaEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQ 395
Cdd:TIGR02169 972 PVNMLAIQ------EYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
258-576 |
5.14e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 5.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 258 QTEKETLFNDSRNKIEELQQRKEADL-----KAQLARTQ--KLQQELE-----AANQS------LAELRDQRQGERLEHA 319
Cdd:pfam15921 255 QNKIELLLQQHQDRIEQLISEHEVEItglteKASSARSQanSIQSQLEiiqeqARNQNsmymrqLSDLESTVSQLRSELR 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 320 AALRALQDQIQTaktqelnmLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLranSRLLEQLQEIGQEKEQ---- 395
Cdd:pfam15921 335 EAKRMYEDKIEE--------LEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL---ADLHKREKELSLEKEQnkrl 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 396 LTQDLQEARKSAEKRKvMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYE--RELRELHEDKKRQEEELRGQIR 473
Cdd:pfam15921 404 WDRDTGNSITIDHLRR-ELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNEslEKVSSLTAQLESTKEMLRKVVE 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 474 EEKARTRELENLQHTVEELQAQVHsmdgakgwfERRLKEAEESLQQQQQEQEETLKLCREEHaaeLKGKDEELQNVREQL 553
Cdd:pfam15921 483 ELTAKKMTLESSERTVSDLTASLQ---------EKERAIEATNAEITKLRSRVDLKLQELQH---LKNEGDHLRNVQTEC 550
|
330 340
....*....|....*....|...
gi 569008852 554 QQAQEERDGHVKTISNLKQEVKD 576
Cdd:pfam15921 551 EALKLQMAEKDKVIEILRQQIEN 573
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
230-716 |
5.31e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 43.58 E-value: 5.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 230 QAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEaDLKAQLARTQKLQQELEAANQSLAELRD 309
Cdd:pfam05557 1 RAELIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQ-ELQKRIRLLEKREAEAEEALREQAELNR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 310 QRQGERLEHAAALRALQDQIQTAKTQELNmLREQTSELASELQHRQAEYEELMGQKDDLNSQLQEslransrlleqLQEI 389
Cdd:pfam05557 80 LKKKYLEALNKKLNEKESQLADAREVISC-LKNELSELRRQIQRAELELQSTNSELEELQERLDL-----------LKAK 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 390 GQEKEQLTQDLQEARKSAEKRKVMLDELAMEtLQEKSQHKEELGAVRLRhekelLGVRARYERELRELHEDKKRqeeelr 469
Cdd:pfam05557 148 ASEAEQLRQNLEKQQSSLAEAEQRIKELEFE-IQSQEQDSEIVKNSKSE-----LARIPELEKELERLREHNKH------ 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 470 gqireekartreLENLQHTVEELQAQVHSMdgakgwfERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEEL--- 546
Cdd:pfam05557 216 ------------LNENIENKLLLKEEVEDL-------KRKLEREEKYREEAATLELEKEKLEQELQSWVKLAQDTGLnlr 276
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 547 --QNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKrQLHLERKRADKLQERLQ-EILTNSKSR 623
Cdd:pfam05557 277 spEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQELAQYLKKIE-DLNKKLKRHKALVRRLQrRVLLLTKER 355
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 624 TGLEELVLSEMNSPSRTQTGDSSSVSSFSYREILKE----------------------KESSAIPARSLSSSPQAQPPRP 681
Cdd:pfam05557 356 DGYRAILESYDKELTMSNYSPQLLERIEEAEDMTQKmqahneemeaqlsvaeeelggyKQQAQTLERELQALRQQESLAD 435
|
490 500 510
....*....|....*....|....*....|....*
gi 569008852 682 AELSDEEVAELFQRLAETQQEKWMLEEKVKHLEVS 716
Cdd:pfam05557 436 PSYSKEEVDSLRRKLETLELERQRLREQKNELEME 470
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
151-382 |
5.52e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.75 E-value: 5.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 151 RLQAENTALQKNMAALQERYGKEAVRPSAVGegqgDPPGDVLPTPLAPMPLAEVELKWEMEREEKKLLWEQLQGLESskQ 230
Cdd:PRK11281 77 RQKEETEQLKQQLAQAPAKLRQAQAELEALK----DDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNS--Q 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 231 AETSRLQEELAK--LSEKLKKKQESFCRLQTEKEtlfnDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELR 308
Cdd:PRK11281 151 LVSLQTQPERAQaaLYANSQRLQQIRNLLKGGKV----GGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQ 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 309 DQR-----QGERLEHAaaLRALQDQI---------QTAK---TQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQ 371
Cdd:PRK11281 227 KQRdyltaRIQRLEHQ--LQLLQEAInskrltlseKTVQeaqSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTL 304
|
250
....*....|.
gi 569008852 372 LQESLRANSRL 382
Cdd:PRK11281 305 TQQNLRVKNWL 315
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
338-628 |
5.62e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 5.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 338 NMLRE-QTSELASELQhrqAEYEELMGQKDDLnsqlqESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDE 416
Cdd:COG4913 216 YMLEEpDTFEAADALV---EHFDDLERAHEAL-----EDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 417 LAMETLQEKSQhkeelgavRLRHEKELLGVRaryERELRELHEDKKRQEEELRGQIREEKarTRELENLQHTVEELQAQV 496
Cdd:COG4913 288 RRLELLEAELE--------ELRAELARLEAE---LERLEARLDALREELDELEAQIRGNG--GDRLEQLEREIERLEREL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 497 hsmdgakgwfERRLKEaeeslqqqqqeqeetlklcREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKD 576
Cdd:COG4913 355 ----------EERERR-------------------RARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEE 405
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 569008852 577 TVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGLEE 628
Cdd:COG4913 406 ALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDE 457
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
210-499 |
6.53e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.67 E-value: 6.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 210 MEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLAR 289
Cdd:pfam12128 237 MKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 290 TQKLQQELEAANQSLAELRDqrqgERLEHAAALRALQDQIQTaktqELNMLREQTSELASELQHRQAEYE---------- 359
Cdd:pfam12128 317 VAKDRSELEALEDQHGAFLD----ADIETAAADQEQLPSWQS----ELENLEERLKALTGKHQDVTAKYNrrrskikeqn 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 360 --ELMGQKDDLNSQLQESLRANSRLLEQLQEIGQE-KEQLTQDLQEARKSAEKRKVMLDELAM---------ETLQEKSQ 427
Cdd:pfam12128 389 nrDIAGIKDKLAKIREARDRQLAVAEDDLQALESElREQLEAGKLEFNEEEYRLKSRLGELKLrlnqatatpELLLQLEN 468
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 569008852 428 HKEELGAVRLRHEKEllgvRARYERELRELHEDKKRQEEELRgQIREEKARTRELEN-LQHTVEELQAQVHSM 499
Cdd:pfam12128 469 FDERIERAREEQEAA----NAEVERLQSELRQARKRRDQASE-ALRQASRRLEERQSaLDELELQLFPQAGTL 536
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
267-616 |
7.39e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 7.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 267 DSRNKIEELQQRKE---ADLKAQLARTQKLQQELEAANQSLAELRD-QRQGERLEH-AAALRALqdqiqTAKTQELNMLR 341
Cdd:COG3096 296 GARRQLAEEQYRLVemaRELEELSARESDLEQDYQAASDHLNLVQTaLRQQEKIERyQEDLEEL-----TERLEEQEEVV 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 342 EqtsELASELQHRQAEYEELMGQKDDLNSQLQESLRAnsrlLEQLQEIGQEKEQLTQDLQEARKSAEkrkvmLDELAMET 421
Cdd:COG3096 371 E---EAAEQLAEAEARLEAAEEEVDSLKSQLADYQQA----LDVQQTRAIQYQQAVQALEKARALCG-----LPDLTPEN 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 422 L---QEKSQHKEELGAVRLRHEKELLGV----RARYERELREL--------HEDKKRQEEELRGQIREEKARTRELENLQ 486
Cdd:COG3096 439 AedyLAAFRAKEQQATEEVLELEQKLSVadaaRRQFEKAYELVckiageveRSQAWQTARELLRRYRSQQALAQRLQQLR 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 487 HTVEELQAQVHSMDGAkgwfeRRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKT 566
Cdd:COG3096 519 AQLAELEQRLRQQQNA-----ERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRAR 593
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 569008852 567 ISNLKQEVKDTVDGQRILEKKGSAV---LKDLK-----RQLHLERKRA-----DKLQERLQEI 616
Cdd:COG3096 594 IKELAARAPAWLAAQDALERLREQSgeaLADSQevtaaMQQLLEREREatverDELAARKQAL 656
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
267-559 |
8.74e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 8.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 267 DSRNKIEELQQRKEA---DLKAQLARTQKLQQELEAANQSLA----ELRDQRQGERLEhaAALRALqdqiqTAKTQELNM 339
Cdd:PRK04863 297 TSRRQLAAEQYRLVEmarELAELNEAESDLEQDYQAASDHLNlvqtALRQQEKIERYQ--ADLEEL-----EERLEEQNE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 340 LREQTSELASELQHRQAEYEElmgQKDDLNSQLQESLRAnsrlLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELam 419
Cdd:PRK04863 370 VVEEADEQQEENEARAEAAEE---EVDELKSQLADYQQA----LDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNA-- 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 420 ETLQEKSQHKEELGAVRLRHEKELLGV----RARYERELRELH--------EDKKRQEEELRGQIREEKARTRELENLQH 487
Cdd:PRK04863 441 EDWLEEFQAKEQEATEELLSLEQKLSVaqaaHSQFEQAYQLVRkiagevsrSEAWDVARELLRRLREQRHLAEQLQQLRM 520
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 569008852 488 TVEELQAQVHSMDGAkgwfeRRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQ---LQQAQEE 559
Cdd:PRK04863 521 RLSELEQRLRQQQRA-----ERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERrmaLRQQLEQ 590
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
220-417 |
9.32e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 9.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 220 EQLQGLESSKQAETSRLQEELAklsEKLKKKQESFCRLQTEKETLFNDSRnkiEELQQRKEADLKAQLARTQKLQQELEA 299
Cdd:pfam12128 653 LDLRRLFDEKQSEKDKKNKALA---ERKDSANERLNSLEAQLKQLDKKHQ---AWLEEQKEQKREARTEKQAYWQVVEGA 726
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 300 ANQSLAELRDQRQGERLEHAAALRALQ------------DQIQTAKTQELNMLREQTSELASELQHRQAEYEELMG---- 363
Cdd:pfam12128 727 LDAQLALLKAAIAARRSGAKAELKALEtwykrdlaslgvDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQetwl 806
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 569008852 364 -QKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDEL 417
Cdd:pfam12128 807 qRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSEN 861
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
230-490 |
9.51e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 9.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 230 QAETSRLQEELAKLSEKLKKKQ---ESFCRLQTEKETL------------FNDSRNKIE---------ELQQRKEAD-LK 284
Cdd:PRK04863 792 RAEREELAERYATLSFDVQKLQrlhQAFSRFIGSHLAVafeadpeaelrqLNRRRVELEraladhesqEQQQRSQLEqAK 871
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 285 AQLARTQKL------------QQELEAANQSLAELRD-----QRQGERLEH----AAALR-------ALQDQIQTAKtQE 336
Cdd:PRK04863 872 EGLSALNRLlprlnlladetlADRVEEIREQLDEAEEakrfvQQHGNALAQlepiVSVLQsdpeqfeQLKQDYQQAQ-QT 950
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 337 LNMLREQTSELASELQHRQ----AEYEELMGQKDDLNSQLQESLR----ANSRLLEQLQEIGQEKEQLTQDLQEARKSAE 408
Cdd:PRK04863 951 QRDAKQQAFALTEVVQRRAhfsyEDAAEMLAKNSDLNEKLRQRLEqaeqERTRAREQLRQAQAQLAQYNQVLASLKSSYD 1030
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 409 KRKVMLDELAMEtLQEKSQHKEELGAVRLRHEKELLGVRARYERELR-ELHEDKKRQEEELRGQIREEKARTRELENLQH 487
Cdd:PRK04863 1031 AKRQMLQELKQE-LQDLGVPADSGAEERARARRDELHARLSANRSRRnQLEKQLTFCEAEMDNLTKKLRKLERDYHEMRE 1109
|
...
gi 569008852 488 TVE 490
Cdd:PRK04863 1110 QVV 1112
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
237-405 |
1.15e-03 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 42.67 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 237 QEELAKLSEKLKKKQESFCRlQTEKETLFNDSRNKIEELQQRKE---ADLKAQLARTQKLQQE--LEAANQSLAELrdQR 311
Cdd:pfam13779 508 DEEIAKLMQELREALDDYMQ-ALAEQAQQNPQDLQQPDDPNAQEmtqQDLQRMLDRIEELARSgrRAEAQQMLSQL--QQ 584
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 312 QGERLEhAAALRALQDQIQTAKTQELN----MLREQTS---ELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLL- 383
Cdd:pfam13779 585 MLENLQ-AGQPQQQQQQGQSEMQQAMDelgdLLREQQQlldETFRQLQQQGGQQQGQPGQQGQQGQGQQPGQGGQQPGAq 663
|
170 180
....*....|....*....|....*....
gi 569008852 384 -------EQLQEIGQEKEQLTQDLQEARK 405
Cdd:pfam13779 664 mppqggaEALGDLAERQQALRRRLEELQD 692
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
209-408 |
1.23e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 209 EMEREEKKLLWEQlqglESSKQAETSRLQEELAKLSEKLK----KKQESFCRLQTEKEtlfnDSRNKIEELQQRKEADLK 284
Cdd:pfam17380 417 QQKVEMEQIRAEQ----EEARQREVRRLEEERAREMERVRleeqERQQQVERLRQQEE----ERKRKKLELEKEKRDRKR 488
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 285 AQLARTQKLQQELEAANQSLAELRDQRqgerlehaaalralqdqiqtaKTQELNMLREQTSeLASELQHRQAEYEELMGQ 364
Cdd:pfam17380 489 AEEQRRKILEKELEERKQAMIEEERKR---------------------KLLEKEMEERQKA-IYEEERRREAEEERRKQQ 546
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 569008852 365 KDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAE 408
Cdd:pfam17380 547 EMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
87-374 |
2.01e-03 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 42.09 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 87 LLSENEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQlkEGVPGAAGAHVDGELLRLQAENTALQknmaAL 166
Cdd:PRK10246 614 LLSQRHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQ--EDEEASWLATRQQEAQSWQQRQNELT----AL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 167 QERYGKEAVRPSAVgegqgdPPGDVLPTPLAPMPLAEvelkWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEK 246
Cdd:PRK10246 688 QNRIQQLTPLLETL------PQSDDLPHSEETVALDN----WRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTA 757
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 247 LKKK----QESFCRLQTEKETlfndsRNKIEELQQRKEADLKAQLARTQKLQQELEA-ANQSLAELRDQRQGERLEHAAA 321
Cdd:PRK10246 758 LQASvfddQQAFLAALLDEET-----LTQLEQLKQNLENQRQQAQTLVTQTAQALAQhQQHRPDGLDLTVTVEQIQQELA 832
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 569008852 322 LRALQDQIQTAKTQElnmLREQTSELASELQHRQAeyeeLMGQKDDLNSQLQE 374
Cdd:PRK10246 833 QLAQQLRENTTRQGE---IRQQLKQDADNRQQQQA----LMQQIAQATQQVED 878
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
268-416 |
2.11e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 41.86 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 268 SRNKIEELQQRKEADLKAQLARTQKLQQEL------------EAANQSLAELRDQRQGERLEHAAA---LRALQDQ---- 328
Cdd:PRK11448 51 ALLGIYEPPCENQHDLLRRLGKEGFLPDEIldvfhklrkignKAVHEFHGDHREALMGLKLAFRLAvwfHRTYGKDwdfk 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 329 ------------IQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQL 396
Cdd:PRK11448 131 pgpfvppedpenLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAET 210
|
170 180
....*....|....*....|...
gi 569008852 397 TQDLQEARKSAEKR---KVMLDE 416
Cdd:PRK11448 211 SQERKQKRKEITDQaakRLELSE 233
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
201-457 |
2.28e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 201 LAEVELKWEMEREEKKLLWEqLQGLESSKQAETSRLQE---ELAKLSEKLKKKQESFCRLQTEKETL----FNDSRNKIE 273
Cdd:PRK03918 517 LEELEKKAEEYEKLKEKLIK-LKGEIKSLKKELEKLEElkkKLAELEKKLDELEEELAELLKELEELgfesVEELEERLK 595
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 274 ELQ---------QRKEADLKAQLARTQKLQQELEAANQSLAELRdqrqgerlehaAALRALQDQIQTAKT----QELNML 340
Cdd:PRK03918 596 ELEpfyneylelKDAEKELEREEKELKKLEEELDKAFEELAETE-----------KRLEELRKELEELEKkyseEEYEEL 664
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 341 REQTSELASELQHRQAEYEELMGQKDDLNSQLqESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAME 420
Cdd:PRK03918 665 REEYLELSRELAGLRAELEELEKRREEIKKTL-EKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALS 743
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 569008852 421 TLQE-KSQHKEEL-----GAVRLRHEKELLGVRARYERELREL 457
Cdd:PRK03918 744 KVGEiASEIFEELtegkySGVRVKAEENKVKLFVVYQGKERPL 786
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
209-481 |
2.82e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 2.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 209 EMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLA 288
Cdd:pfam02463 749 EEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEE 828
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 289 RTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDL 368
Cdd:pfam02463 829 KIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQK 908
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 369 NSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRA 448
Cdd:pfam02463 909 LNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEE 988
|
250 260 270
....*....|....*....|....*....|...
gi 569008852 449 RYERELRELHEDKKRQEEELRGQIREEKARTRE 481
Cdd:pfam02463 989 RYNKDELEKERLEEEKKKLIRAIIEETCQRLKE 1021
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
213-401 |
3.14e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 3.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 213 EEKKLLWEQLQGLESSKQAetsrLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRnkIEELQQRkEADLKAQLARTQK 292
Cdd:COG3206 212 EEAKLLLQQLSELESQLAE----ARAELAEAEARLAALRAQLGSGPDALPELLQSPV--IQQLRAQ-LAELEAELAELSA 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 293 LQQE----LEAANQSLAELRDQRQGERLEHAAALRAlQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDL 368
Cdd:COG3206 285 RYTPnhpdVIALRAQIAALRAQLQQEAQRILASLEA-ELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVA 363
|
170 180 190
....*....|....*....|....*....|...
gi 569008852 369 NSQLQEslransrLLEQLQEIGQEKEQLTQDLQ 401
Cdd:COG3206 364 RELYES-------LLQRLEEARLAEALTVGNVR 389
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
227-388 |
3.89e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.33 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 227 SSKQAETSRLQEELAKLSEKLKKKQESFCRLQtekETLfndsrnkieelqqrkeADLKAQLARTQKLQQELEAANQSLAE 306
Cdd:PRK09039 49 SGKDSALDRLNSQIAELADLLSLERQGNQDLQ---DSV----------------ANLRASLSAAEAERSRLQALLAELAG 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 307 LRDQRQGERLEHAAALRALQDQIQTAKTQ------ELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLqeslraNS 380
Cdd:PRK09039 110 AGAAAEGRAGELAQELDSEKQVSARALAQvellnqQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL------NV 183
|
....*...
gi 569008852 381 RLLEQLQE 388
Cdd:PRK09039 184 ALAQRVQE 191
|
|
| PRK06975 |
PRK06975 |
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed |
243-309 |
4.56e-03 |
|
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Pssm-ID: 235899 [Multi-domain] Cd Length: 656 Bit Score: 40.47 E-value: 4.56e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 569008852 243 LSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQ------QRKEADLKAQLARTQKLQQELEAANQSLAELRD 309
Cdd:PRK06975 344 LNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQasvhqlDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRD 416
|
|
| OmpH |
pfam03938 |
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ... |
214-306 |
4.80e-03 |
|
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.
Pssm-ID: 461098 [Multi-domain] Cd Length: 140 Bit Score: 38.33 E-value: 4.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 214 EKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADL-KAQLARTQK 292
Cdd:pfam03938 16 EGKAAQAQLEKKFKKRQAELEAKQKELQKLYEELQKDGALLEEEREEKEQELQKKEQELQQLQQKAQQELqKKQQELLQP 95
|
90
....*....|....
gi 569008852 293 LQQELEAANQSLAE 306
Cdd:pfam03938 96 IQDKINKAIKEVAK 109
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
235-497 |
5.19e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 5.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 235 RLQEELAKLSEKLKKKQESFCRLQTEKEtlfndsRNKIEELQQRKEAD-LKAQLArtqKLQQELEA----------ANQS 303
Cdd:COG3096 351 RYQEDLEELTERLEEQEEVVEEAAEQLA------EAEARLEAAEEEVDsLKSQLA---DYQQALDVqqtraiqyqqAVQA 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 304 LAELRDQRQGERL------EHAAALRALQDQIqtakTQELNMLREQTS-ELASELQHRQAeYEELMGQKDDLN-SQLQES 375
Cdd:COG3096 422 LEKARALCGLPDLtpenaeDYLAAFRAKEQQA----TEEVLELEQKLSvADAARRQFEKA-YELVCKIAGEVErSQAWQT 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 376 LRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRK---VMLDELAMETLQEKsQHKEELGAVRLRHEKELLGVRArYER 452
Cdd:COG3096 497 ARELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQnaeRLLEEFCQRIGQQL-DAAEELEELLAELEAQLEELEE-QAA 574
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 569008852 453 ELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVH 497
Cdd:COG3096 575 EAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSG 619
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
236-458 |
5.86e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.38 E-value: 5.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 236 LQEELAKLSEKLKKKQEsfcRLQTEKEtLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELrDQRQGER 315
Cdd:PHA02562 179 LNQQIQTLDMKIDHIQQ---QIKTYNK-NIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL-VMDIEDP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 316 LEHAAALR----ALQDQIQTAK---------------TQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESL 376
Cdd:PHA02562 254 SAALNKLNtaaaKIKSKIEQFQkvikmyekggvcptcTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 377 RANSRLLEQLQEIGQEKeqltQDLQEARKSAEKRKVMLDELAMETLqeksQHKEELGAVRlRHEKELLGVRARYERELRE 456
Cdd:PHA02562 334 EQSKKLLELKNKISTNK----QSLITLVDKAKKVKAAIEELQAEFV----DNAEELAKLQ-DELDKIVKTKSELVKEKYH 404
|
..
gi 569008852 457 LH 458
Cdd:PHA02562 405 RG 406
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
221-504 |
5.99e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.54 E-value: 5.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 221 QLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFND--SRNKIEELQQRKEADLKAQLAR------TQK 292
Cdd:pfam01576 237 QLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESEraARNKAEKQRRDLGEELEALKTEledtldTTA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 293 LQQELEAA-NQSLAELRD-----------QRQGERLEHAAALRALQDQIQTAKTQELNM------LREQTSELASELQHR 354
Cdd:pfam01576 317 AQQELRSKrEQEVTELKKaleeetrsheaQLQEMRQKHTQALEELTEQLEQAKRNKANLekakqaLESENAELQAELRTL 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 355 QAEYEE-------LMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDEL------AMET 421
Cdd:pfam01576 397 QQAKQDsehkrkkLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLesqlqdTQEL 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 422 LQEKSQHKEELGAVRLRHEKELLGVRARYERELR--------------ELHEDKKRQEEELRGQIREEKAR---TRELEN 484
Cdd:pfam01576 477 LQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEakrnverqlstlqaQLSDMKKKLEEDAGTLEALEEGKkrlQRELEA 556
|
330 340
....*....|....*....|
gi 569008852 485 LQHTVEELQAQVHSMDGAKG 504
Cdd:pfam01576 557 LTQQLEEKAAAYDKLEKTKN 576
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
232-486 |
6.33e-03 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 39.85 E-value: 6.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 232 ETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQR 311
Cdd:pfam02029 60 EEEAFLDRTAKREERRQKRLQEALERQKEFDPTIADEKESVAERKENNEEEENSSWEKEEKRDSRLGRYKEEETEIREKE 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 312 QGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEyEELMGQKDDLNSQLQESLRAN----SRLLEQLQ 387
Cdd:pfam02029 140 YQENKWSTEVRQAEEEGEEEEDKSEEAEEVPTENFAKEEVKDEKIK-KEKKVKYESKVFLDQKRGHPEvksqNGEEEVTK 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 388 EIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRH-------EKELLGVRARYERELRELHED 460
Cdd:pfam02029 219 LKVTTKRRQGGLSQSQEREEEAEVFLEAEQKLEELRRRRQEKESEEFEKLRQkqqeaelELEELKKKREERRKLLEEEEQ 298
|
250 260
....*....|....*....|....*.
gi 569008852 461 KKRQEEELRgQIREEKARTRELENLQ 486
Cdd:pfam02029 299 RRKQEEAER-KLREEEEKRRMKEEIE 323
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
52-466 |
7.02e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 7.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 52 PELSSLRQKV-AYLDKEFSKAQKALSKSKKAQEVEVLLSENEMLQAKLHSQEEDFRlQNSTLMAEFSKLCSQLEQLELEN 130
Cdd:TIGR00618 459 IHLQESAQSLkEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPN-PARQDIDNPGPLTRRMQRGEQTY 537
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 131 RQLKEgvpgaAGAHVDGELLRLQAENTALQKNMAALQERYGKEAVRPSAVGEgqgdppgdVLPTPLAPMPLAEVELKWEM 210
Cdd:TIGR00618 538 AQLET-----SEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKE--------DIPNLQNITVRLQDLTEKLS 604
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 211 EREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQT-----EKETLFNDSRNKIEELQQRKEADLKA 285
Cdd:TIGR00618 605 EAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLtltqeRVREHALSIRVLPKELLASRQLALQK 684
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 286 QLARTQKLQQELEAANQSLAELRDQrqgerLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEyeelmgQK 365
Cdd:TIGR00618 685 MQSEKEQLTYWKEMLAQCQTLLREL-----ETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQ------AR 753
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 366 DDLNSQLQESLRANSRLLEQLQeIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLG 445
Cdd:TIGR00618 754 TVLKARTEAHFNNNEEVTAALQ-TGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQ 832
|
410 420
....*....|....*....|.
gi 569008852 446 VRARYERELRELHEDKKRQEE 466
Cdd:TIGR00618 833 FLSRLEEKSATLGEITHQLLK 853
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
236-495 |
7.60e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 39.89 E-value: 7.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 236 LQEELAKLseklkKKQESfcrLQTEKETLFNDSRNKIEELQQRKEadlkaQLARTQKLQQELEAANQSLAElrDQRQGER 315
Cdd:PRK11281 41 VQAQLDAL-----NKQKL---LEAEDKLVQQDLEQTLALLDKIDR-----QKEETEQLKQQLAQAPAKLRQ--AQAELEA 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 316 LEHAAAlralQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQL---QESLRANSrllEQLQEIGQE 392
Cdd:PRK11281 106 LKDDND----EETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPeraQAALYANS---QRLQQIRNL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 393 KEQLTQDlqEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLrheKELLGVRaryeRELRELHEDkkRQEEELrgQI 472
Cdd:PRK11281 179 LKGGKVG--GKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQL---QDLLQKQ----RDYLTARIQ--RLEHQL--QL 245
|
250 260
....*....|....*....|...
gi 569008852 473 REEKARTRELENLQHTVEELQAQ 495
Cdd:PRK11281 246 LQEAINSKRLTLSEKTVQEAQSQ 268
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
53-404 |
7.95e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.75 E-value: 7.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 53 ELSSLRQKVAYLDKEFSKAQKALskskkAQEVEVLLSENEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQ 132
Cdd:COG4717 157 ELRELEEELEELEAELAELQEEL-----EELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQ 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 133 LKEGVPGAAGAHVDGELLRLQAENTALQKNMAALQERYGKEAVRPSAVGEGQGDPPGDVLPTPLAPMPLAEVELKWEMER 212
Cdd:COG4717 232 LENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALP 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 213 EEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETL-FNDSRNKIEELQQRKEADLKAQLARTQ 291
Cdd:COG4717 312 ALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELqLEELEQEIAALLAEAGVEDEEELRAAL 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 292 KLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMgqkddlnsq 371
Cdd:COG4717 392 EQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAEL--------- 462
|
330 340 350
....*....|....*....|....*....|...
gi 569008852 372 lqESLRANSRLLEQLQEIGQEKEQLTQDLQEAR 404
Cdd:COG4717 463 --EQLEEDGELAELLQELEELKAELRELAEEWA 493
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
389-723 |
8.73e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 39.95 E-value: 8.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 389 IGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRqEEEL 468
Cdd:pfam02463 164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEER-IDLL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 469 RGQIREEKARTRELENLQHTVEELQAQVHSMDGAkgwfERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQN 548
Cdd:pfam02463 243 QELLRDEQEEIESSKQEIEKEEEKLAQVLKENKE----EEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 549 VREQLQQAQEERDGHVKTISNLKQEvKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGLEE 628
Cdd:pfam02463 319 SEKEKKKAEKELKKEKEEIEELEKE-LKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEEL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 629 LVLSEMNSPSRTQTGDSSSVSSFSYREILKEKESSAIPARSLSSSPQAQPPRPAELSDEEVAELFQRLAETQQEKWMLEE 708
Cdd:pfam02463 398 ELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKET 477
|
330
....*....|....*
gi 569008852 709 KVKHLEVSSASMAED 723
Cdd:pfam02463 478 QLVKLQEQLELLLSR 492
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
211-417 |
9.14e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 39.61 E-value: 9.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 211 EREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKetlfndsrnkieelqqrkeADLKAQLART 290
Cdd:PHA02562 214 NIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAA-------------------AKIKSKIEQF 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 291 QKLQ-------------QELEAANQSLAELRDQRQgerlEHAAALRALQDQIQTAKtQELNMLREQTS---ELASELQHR 354
Cdd:PHA02562 275 QKVIkmyekggvcptctQQISEGPDRITKIKDKLK----ELQHSLEKLDTAIDELE-EIMDEFNEQSKkllELKNKISTN 349
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 569008852 355 QAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDEL 417
Cdd:PHA02562 350 KQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLL 412
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
270-732 |
9.61e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 39.72 E-value: 9.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 270 NKIEELQQRKEADLKAQL----ARTQKLQQELEA-------ANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQ--E 336
Cdd:pfam15921 95 NESNELHEKQKFYLRQSVidlqTKLQEMQMERDAmadirrrESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQieQ 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 337 LNMLREQTSELASELQHRQAEYEELMGQK----DDLNSQLQESL-RANSRLLEQLQ-EIGQEKEQL--TQDLQEARKSAE 408
Cdd:pfam15921 175 LRKMMLSHEGVLQEIRSILVDFEEASGKKiyehDSMSTMHFRSLgSAISKILRELDtEISYLKGRIfpVEDQLEALKSES 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 409 KRKVmldELAMEtlqeksQHKEELGAVRLRHEKELLGVRARyERELRELHEDKKRQEEELRGQIREEKAR-TRELENLQH 487
Cdd:pfam15921 255 QNKI---ELLLQ------QHQDRIEQLISEHEVEITGLTEK-ASSARSQANSIQSQLEIIQEQARNQNSMyMRQLSDLES 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 488 TVEELQAQVHSmdgAKGWFERRLKEAEESLQQQQQEQEETlKLCREEHAAELKGKDEELQNVREQLQQAQEE-------- 559
Cdd:pfam15921 325 TVSQLRSELRE---AKRMYEDKIEELEKQLVLANSELTEA-RTERDQFSQESGNLDDQLQKLLADLHKREKElslekeqn 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 560 -----RD-GHVKTISNLKQEVKD-TVDGQRIlekkgSAVLKDLKR--QLHLERKRA-----DKLQERLQEILTNSKSRTG 625
Cdd:pfam15921 401 krlwdRDtGNSITIDHLRRELDDrNMEVQRL-----EALLKAMKSecQGQMERQMAaiqgkNESLEKVSSLTAQLESTKE 475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008852 626 LEELVLSEMNSPSRTQtgdsssvssfsyreilkekESSAIPARSLSSSPQaQPPRPAELSDEEVAELFQRLAETQQEKWM 705
Cdd:pfam15921 476 MLRKVVEELTAKKMTL-------------------ESSERTVSDLTASLQ-EKERAIEATNAEITKLRSRVDLKLQELQH 535
|
490 500 510
....*....|....*....|....*....|
gi 569008852 706 L---EEKVKHLEVSSASMAEDLCRKSAIIE 732
Cdd:pfam15921 536 LkneGDHLRNVQTECEALKLQMAEKDKVIE 565
|
|
| |
