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Conserved domains on  [gi|568997684|ref|XP_006523164|]
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ubiquitin carboxyl-terminal hydrolase 16 isoform X2 [Mus musculus]

Protein Classification

zf-UBP and Peptidase_C19K domain-containing protein( domain architecture ID 10489803)

zf-UBP and Peptidase_C19K domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
623-821 2.86e-80

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 259.63  E-value: 2.86e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 623 REAFSTDECSIQHCLYQFTRNEKLQDANKLLCEVCsrrqcngpkanikgdrrhvyTNAKKQMLVSLAPPVLTLHLKRFQQ 702
Cdd:cd02667  103 RSDEIKSECSIESCLKQFTEVEILEGNNKFACENC--------------------TKAKKQYLISKLPPVLVIHLKRFQQ 162
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 703 AGF-NLRKVNKHIKFPEILDLAPFCTLKCkNVAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKERTASCHLSNLVLHgdI 781
Cdd:cd02667  163 PRSaNLRKVSRHVSFPEILDLAPFCDPKC-NSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLTKS--K 239
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 568997684 782 PQDCEMESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYE 821
Cdd:cd02667  240 PAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19 super family cl02553
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
195-400 7.66e-50

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


The actual alignment was detected with superfamily member cd02667:

Pssm-ID: 470612 [Multi-domain]  Cd Length: 279  Bit Score: 176.81  E-value: 7.66e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 195 GLSNLGNTCFFNAVMQNLSQTPVLRELLKEvkmsgtivkieppdlalteplevnleppgpltlamsqflsemqenkkrvv 274
Cdd:cd02667    1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------------------- 30
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 275 TPKELFSQVCKKATRFKGYQQQDSQELLRYLLDGMRaeehqrvskgilkafgnstekldeevknkvkdyekkkaipSFVD 354
Cdd:cd02667   31 TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLR----------------------------------------TFID 70
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 568997684 355 RIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKSINDK 400
Cdd:cd02667   71 SIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESC 116
zf-UBP pfam02148
Zn-finger in ubiquitin-hydrolases and other protein;
48-122 2.09e-19

Zn-finger in ubiquitin-hydrolases and other protein;


:

Pssm-ID: 460464  Cd Length: 63  Bit Score: 82.69  E-value: 2.09e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568997684   48 CQDCKTDNkvkdkpeeeaedpSVWLCLKCGHQGCGRdSQEQHALKHYTTPRsepHYLVLSLDNWSVWCYKCDEEV 122
Cdd:pfam02148   1 CSLCGNTS-------------NLWLCLTCGHVGCGR-YQNSHALEHYEETG---HPLAVNLSTLTVYCYPCDDYV 58
 
Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
623-821 2.86e-80

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 259.63  E-value: 2.86e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 623 REAFSTDECSIQHCLYQFTRNEKLQDANKLLCEVCsrrqcngpkanikgdrrhvyTNAKKQMLVSLAPPVLTLHLKRFQQ 702
Cdd:cd02667  103 RSDEIKSECSIESCLKQFTEVEILEGNNKFACENC--------------------TKAKKQYLISKLPPVLVIHLKRFQQ 162
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 703 AGF-NLRKVNKHIKFPEILDLAPFCTLKCkNVAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKERTASCHLSNLVLHgdI 781
Cdd:cd02667  163 PRSaNLRKVSRHVSFPEILDLAPFCDPKC-NSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLTKS--K 239
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 568997684 782 PQDCEMESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYE 821
Cdd:cd02667  240 PAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
195-400 7.66e-50

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 176.81  E-value: 7.66e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 195 GLSNLGNTCFFNAVMQNLSQTPVLRELLKEvkmsgtivkieppdlalteplevnleppgpltlamsqflsemqenkkrvv 274
Cdd:cd02667    1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------------------- 30
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 275 TPKELFSQVCKKATRFKGYQQQDSQELLRYLLDGMRaeehqrvskgilkafgnstekldeevknkvkdyekkkaipSFVD 354
Cdd:cd02667   31 TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLR----------------------------------------TFID 70
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 568997684 355 RIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKSINDK 400
Cdd:cd02667   71 SIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESC 116
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
195-822 1.21e-34

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 141.94  E-value: 1.21e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 195 GLSNLGNTCFFNAVMQNLSQTPVLRE--LLKEVKMsgtivkieppdlalteplEVNLEPP----GPLTLAMSQFLSEMQE 268
Cdd:COG5560  267 GLRNLGNTCYMNSALQCLMHTWELRDyfLSDEYEE------------------SINEENPlgmhGSVASAYADLIKQLYD 328
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 269 NKKRVVTPKELFSQVCKKATRFKGYQQQDSQELLRYLLDGMraeeHQRVSKGILKAFG---NSTEKLDEEVKNKVKD--Y 343
Cdd:COG5560  329 GNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGL----HEDLNRIIKKPYTskpDLSPGDDVVVKKKAKEcwW 404
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 344 EKKKAIPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKSIN----DKNVKMTMEEEDKDSEEEKDD 419
Cdd:COG5560  405 EHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVvfpeSGRRQPLKIELDASSTIRGLK 484
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 420 SYMKSRSDLpSGTSKHLQKKAKKQAKKQAKNQRR---QQKI-QERFLHFNElcatdyTEDNereadtalagEVEVDTdsT 495
Cdd:COG5560  485 KLVDAEYGK-LGCFEIKVMCIYYGGNYNMLEPADkvlLQDIpQTDFVYLYE------TNDN----------GIEVPV--V 545
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 496 HGSQEEATQ---------IELSVNQKdldgqeSMIerTPDVQESPEDLGVKSANTESDLGIVTPAPECPRDfngaflEER 566
Cdd:COG5560  546 HLRIEKGYKskrlfgdpfLQLNVLIK------ASI--YDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLRE------ESS 611
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 567 TSGELDIINGLKNLNL------NAAVDPDEINIEIpndSHSAPKVYEVMNEDPETAFCTLANREAFSTdecsIQHCLYQF 640
Cdd:COG5560  612 PSSWLKLETEIDTKREeqveeeGQMNFNDAVVISC---EWEEKRYLSLFSYDPLWTIREIGAAERTIT----LQDCLNEF 684
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 641 TRNEKLQDANKLLCEVCsrrqcngpkaniKGDRRhvytnAKKQMLVSLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPeIL 720
Cdd:COG5560  685 SKPEQLGLSDSWYCPGC------------KEFRQ-----ASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYP-ID 746
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 721 DLapfcTLKCKNVAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKertaschlsnlvlhgdipqdcemESTKGQWFHISDT 800
Cdd:COG5560  747 DL----DLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYAR-----------------------NFANNGWYLFDDS 799
                        650       660
                 ....*....|....*....|..
gi 568997684 801 HVQAVPITKVLNSQAYLLFYER 822
Cdd:COG5560  800 RITEVDPEDSVTSSAYVLFYRR 821
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
611-820 1.69e-33

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 131.41  E-value: 1.69e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684  611 EDPETAFCTLANREAFSTDECSIQHCLYQFTRNEKLQDANKLLCEVCSRRQcngpkanikgdrrhvytNAKKQMLVSLAP 690
Cdd:pfam00443 142 FEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQ-----------------DAIKQLKISRLP 204
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684  691 PVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKnvAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKertasc 770
Cdd:pfam00443 205 PVLIIHLKRFSYNRSTWEKLNTEVEFPLELDLSRYLAEELK--PKTNNLQDYRLVAVVVHSGSLSSGHYIAYIK------ 276
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 568997684  771 hlsnlvlhgdipqdcemESTKGQWFHISDTHVQAV-PITKVLNSQAYLLFY 820
Cdd:pfam00443 277 -----------------AYENNRWYKFDDEKVTEVdEETAVLSSSAYILFY 310
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
195-392 1.29e-28

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 117.16  E-value: 1.29e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684  195 GLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKieppdlaltEPLEVNLeppgplTLAMSQFLSEMQENKK-RV 273
Cdd:pfam00443   2 GLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSR---------YNKDINL------LCALRDLFKALQKNSKsSS 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684  274 VTPKELFSQVCKKATRFKGYQQQDSQELLRYLLDGmraeehqrvskgilkafgnstekLDEEVKNKVkdyekKKAIPSFV 353
Cdd:pfam00443  67 VSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDG-----------------------LHEDLNGNH-----STENESLI 118
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 568997684  354 DRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQS 392
Cdd:pfam00443 119 TDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSA 157
zf-UBP pfam02148
Zn-finger in ubiquitin-hydrolases and other protein;
48-122 2.09e-19

Zn-finger in ubiquitin-hydrolases and other protein;


Pssm-ID: 460464  Cd Length: 63  Bit Score: 82.69  E-value: 2.09e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568997684   48 CQDCKTDNkvkdkpeeeaedpSVWLCLKCGHQGCGRdSQEQHALKHYTTPRsepHYLVLSLDNWSVWCYKCDEEV 122
Cdd:pfam02148   1 CSLCGNTS-------------NLWLCLTCGHVGCGR-YQNSHALEHYEETG---HPLAVNLSTLTVYCYPCDDYV 58
ZnF_UBP smart00290
Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;
47-113 1.15e-07

Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;


Pssm-ID: 197632  Cd Length: 50  Bit Score: 48.90  E-value: 1.15e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568997684    47 ICQDCKTDNKVkdkpeeeaedpsvWLCLKCGHQGCGRdSQEQHALKHYttpRSEPHYLVLSLDNWSV 113
Cdd:smart00290   1 RCSVCGTIENL-------------WLCLTCGQVGCGR-YQNGHALEHF---EETGHPLVVKLGTQRV 50
 
Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
623-821 2.86e-80

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 259.63  E-value: 2.86e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 623 REAFSTDECSIQHCLYQFTRNEKLQDANKLLCEVCsrrqcngpkanikgdrrhvyTNAKKQMLVSLAPPVLTLHLKRFQQ 702
Cdd:cd02667  103 RSDEIKSECSIESCLKQFTEVEILEGNNKFACENC--------------------TKAKKQYLISKLPPVLVIHLKRFQQ 162
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 703 AGF-NLRKVNKHIKFPEILDLAPFCTLKCkNVAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKERTASCHLSNLVLHgdI 781
Cdd:cd02667  163 PRSaNLRKVSRHVSFPEILDLAPFCDPKC-NSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLTKS--K 239
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 568997684 782 PQDCEMESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYE 821
Cdd:cd02667  240 PAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
195-400 7.66e-50

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 176.81  E-value: 7.66e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 195 GLSNLGNTCFFNAVMQNLSQTPVLRELLKEvkmsgtivkieppdlalteplevnleppgpltlamsqflsemqenkkrvv 274
Cdd:cd02667    1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------------------- 30
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 275 TPKELFSQVCKKATRFKGYQQQDSQELLRYLLDGMRaeehqrvskgilkafgnstekldeevknkvkdyekkkaipSFVD 354
Cdd:cd02667   31 TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLR----------------------------------------TFID 70
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 568997684 355 RIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKSINDK 400
Cdd:cd02667   71 SIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESC 116
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
632-820 1.60e-40

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 151.27  E-value: 1.60e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 632 SIQHCLYQFTRNEKLQDANKLLCEVCSRrqcngpkanikgdrrhvYTNAKKQMLVSLAPPVLTLHLKRFQqaGFNLRKVN 711
Cdd:cd02661  163 SLEDALEQFTKPEQLDGENKYKCERCKK-----------------KVKASKQLTIHRAPNVLTIHLKRFS--NFRGGKIN 223
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 712 KHIKFPEILDLAPFCTlkckNVAEESTRvlYSLYGVVEHSGT-MRSGHYTAYAKertaschlsnlvlhgdipqdcemeST 790
Cdd:cd02661  224 KQISFPETLDLSPYMS----QPNDGPLK--YKLYAVLVHSGFsPHSGHYYCYVK------------------------SS 273
                        170       180       190
                 ....*....|....*....|....*....|
gi 568997684 791 KGQWFHISDTHVQAVPITKVLNSQAYLLFY 820
Cdd:cd02661  274 NGKWYNMDDSKVSPVSIETVLSQKAYILFY 303
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
627-821 1.22e-39

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 147.24  E-value: 1.22e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 627 STDECSIQHCLYQFTRNEKLQDANKLLCEvcsrrqcngpkanikgdrRHVYTNAKKQMLVSLAPPVLTLHLKRFQQAG-F 705
Cdd:cd02257   95 GLPQVSLEDCLEKFFKEEILEGDNCYKCE------------------KKKKQEATKRLKIKKLPPVLIIHLKRFSFNEdG 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 706 NLRKVNKHIKFPEILDLAPFCTLKCKNVAEESTRVLYSLYGVVEHSGT-MRSGHYTAYAKERtaschlsnlvlhgdipqd 784
Cdd:cd02257  157 TKEKLNTKVSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTsADSGHYVAYVKDP------------------ 218
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 568997684 785 cemesTKGQWFHISDTHVQAVPITKVL-----NSQAYLLFYE 821
Cdd:cd02257  219 -----SDGKWYKFNDDKVTEVSEEEVLefgslSSSAYILFYE 255
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
195-822 1.21e-34

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 141.94  E-value: 1.21e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 195 GLSNLGNTCFFNAVMQNLSQTPVLRE--LLKEVKMsgtivkieppdlalteplEVNLEPP----GPLTLAMSQFLSEMQE 268
Cdd:COG5560  267 GLRNLGNTCYMNSALQCLMHTWELRDyfLSDEYEE------------------SINEENPlgmhGSVASAYADLIKQLYD 328
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 269 NKKRVVTPKELFSQVCKKATRFKGYQQQDSQELLRYLLDGMraeeHQRVSKGILKAFG---NSTEKLDEEVKNKVKD--Y 343
Cdd:COG5560  329 GNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGL----HEDLNRIIKKPYTskpDLSPGDDVVVKKKAKEcwW 404
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 344 EKKKAIPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKSIN----DKNVKMTMEEEDKDSEEEKDD 419
Cdd:COG5560  405 EHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVvfpeSGRRQPLKIELDASSTIRGLK 484
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 420 SYMKSRSDLpSGTSKHLQKKAKKQAKKQAKNQRR---QQKI-QERFLHFNElcatdyTEDNereadtalagEVEVDTdsT 495
Cdd:COG5560  485 KLVDAEYGK-LGCFEIKVMCIYYGGNYNMLEPADkvlLQDIpQTDFVYLYE------TNDN----------GIEVPV--V 545
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 496 HGSQEEATQ---------IELSVNQKdldgqeSMIerTPDVQESPEDLGVKSANTESDLGIVTPAPECPRDfngaflEER 566
Cdd:COG5560  546 HLRIEKGYKskrlfgdpfLQLNVLIK------ASI--YDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLRE------ESS 611
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 567 TSGELDIINGLKNLNL------NAAVDPDEINIEIpndSHSAPKVYEVMNEDPETAFCTLANREAFSTdecsIQHCLYQF 640
Cdd:COG5560  612 PSSWLKLETEIDTKREeqveeeGQMNFNDAVVISC---EWEEKRYLSLFSYDPLWTIREIGAAERTIT----LQDCLNEF 684
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 641 TRNEKLQDANKLLCEVCsrrqcngpkaniKGDRRhvytnAKKQMLVSLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPeIL 720
Cdd:COG5560  685 SKPEQLGLSDSWYCPGC------------KEFRQ-----ASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYP-ID 746
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 721 DLapfcTLKCKNVAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKertaschlsnlvlhgdipqdcemESTKGQWFHISDT 800
Cdd:COG5560  747 DL----DLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYAR-----------------------NFANNGWYLFDDS 799
                        650       660
                 ....*....|....*....|..
gi 568997684 801 HVQAVPITKVLNSQAYLLFYER 822
Cdd:COG5560  800 RITEVDPEDSVTSSAYVLFYRR 821
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
627-821 1.21e-34

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 132.03  E-value: 1.21e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 627 STDECSIQHCLYQFTRNEKLQDANKLLCEVCSRRQCngpkanikgdrrhvytnAKKQMLVSLAPPVLTLHLKRFQQAGFN 706
Cdd:cd02674   80 DAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRK-----------------ATKKLTISRLPKVLIIHLKRFSFSRGS 142
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 707 LRKVNKHIKFP-EILDLAPFCTLKCKNvaeesTRVLYSLYGVVEHSGTMRSGHYTAYAKertaschlsnlvlhgdipqdc 785
Cdd:cd02674  143 TRKLTTPVTFPlNDLDLTPYVDTRSFT-----GPFKYDLYAVVNHYGSLNGGHYTAYCK--------------------- 196
                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 568997684 786 emESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYE 821
Cdd:cd02674  197 --NNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
611-820 1.69e-33

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 131.41  E-value: 1.69e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684  611 EDPETAFCTLANREAFSTDECSIQHCLYQFTRNEKLQDANKLLCEVCSRRQcngpkanikgdrrhvytNAKKQMLVSLAP 690
Cdd:pfam00443 142 FEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQ-----------------DAIKQLKISRLP 204
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684  691 PVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKnvAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKertasc 770
Cdd:pfam00443 205 PVLIIHLKRFSYNRSTWEKLNTEVEFPLELDLSRYLAEELK--PKTNNLQDYRLVAVVVHSGSLSSGHYIAYIK------ 276
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 568997684  771 hlsnlvlhgdipqdcemESTKGQWFHISDTHVQAV-PITKVLNSQAYLLFY 820
Cdd:pfam00443 277 -----------------AYENNRWYKFDDEKVTEVdEETAVLSSSAYILFY 310
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
632-820 1.72e-29

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 120.17  E-value: 1.72e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 632 SIQHCLYQFTRNEKLQDANkLLCEVCSRRQcngpkanikgdrrhvytNAKKQMLVSLAPPVLTLHLKRFQQAGFNL-RKV 710
Cdd:cd02660  177 TLSDCLDRFTRPEKLGDFA-YKCSGCGSTQ-----------------EATKQLSIKKLPPVLCFQLKRFEHSLNKTsRKI 238
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 711 NKHIKFPEILDLAPFCTLKCKNVAEES---TRVLYSLYGVVEHSGTMRSGHYTAYAKERtaschlsnlvlhgdipqdcem 787
Cdd:cd02660  239 DTYVQFPLELNMTPYTSSSIGDTQDSNsldPDYTYDLFAVVVHKGTLDTGHYTAYCRQG--------------------- 297
                        170       180       190
                 ....*....|....*....|....*....|...
gi 568997684 788 estKGQWFHISDTHVQAVPITKVLNSQAYLLFY 820
Cdd:cd02660  298 ---DGQWFKFDDAMITRVSEEEVLKSQAYLLFY 327
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
195-392 1.29e-28

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 117.16  E-value: 1.29e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684  195 GLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKieppdlaltEPLEVNLeppgplTLAMSQFLSEMQENKK-RV 273
Cdd:pfam00443   2 GLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSR---------YNKDINL------LCALRDLFKALQKNSKsSS 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684  274 VTPKELFSQVCKKATRFKGYQQQDSQELLRYLLDGmraeehqrvskgilkafgnstekLDEEVKNKVkdyekKKAIPSFV 353
Cdd:pfam00443  67 VSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDG-----------------------LHEDLNGNH-----STENESLI 118
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 568997684  354 DRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQS 392
Cdd:pfam00443 119 TDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSA 157
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
632-823 1.08e-24

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 106.19  E-value: 1.08e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 632 SIQHCLYQFTRNEKLQDANKLLCEVCSRRQcngpkanikgdrrhvytNAKKQMLVSLAPPVLTLHLKRFQqagFNL---- 707
Cdd:cd02659  152 NLEESLDAYVQGETLEGDNKYFCEKCGKKV-----------------DAEKGVCFKKLPPVLTLQLKRFE---FDFetmm 211
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 708 -RKVNKHIKFPEILDLAPFC--TLKCKNVAEESTRV---LYSLYGVVEHSGTMRSGHYTAYAKERtaschlsnlvlhgdi 781
Cdd:cd02659  212 rIKINDRFEFPLELDMEPYTekGLAKKEGDSEKKDSesyIYELHGVLVHSGDAHGGHYYSYIKDR--------------- 276
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568997684 782 pqdcemesTKGQWFHISDTHV----------------------QAVPITKVLNSQAYLLFYERI 823
Cdd:cd02659  277 --------DDGKWYKFNDDVVtpfdpndaeeecfggeetqktyDSGPRAFKRTTNAYMLFYERK 332
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
619-821 1.98e-21

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 93.97  E-value: 1.98e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 619 TLANREAFSTDECSIQHCLYQFTRNEKLQDANkllCEVCsrrqcngpkanikgdrrhvytnakkQMLVSLAPPVLTLHLK 698
Cdd:cd02662   84 SLPVPNQSSGSGTTLEHCLDDFLSTEIIDDYK---CDRC-------------------------QTVIVRLPQILCIHLS 135
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 699 RFQQAGFN-LRKVNKHIKFPEILdlapfctlkcknvaeesTRVLYSLYGVVEHSGTMRSGHYTAYAKERTASCHLSNLVL 777
Cdd:cd02662  136 RSVFDGRGtSTKNSCKVSFPERL-----------------PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSF 198
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 568997684 778 HGDIPQDCemeSTKGQWFHISDTHVQAVPITKVL-NSQAYLLFYE 821
Cdd:cd02662  199 VRMREGPS---STSHPWWRISDTTVKEVSESEVLeQKSAYMLFYE 240
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
195-396 3.29e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 91.95  E-value: 3.29e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 195 GLSNLGNTCFFNAVMQNLSQTPVLRELLkevkmsgtivkieppdlaLTEPLEVNLEPPGPLTL-AMSQFLSEMQENKKRV 273
Cdd:cd02661    3 GLQNLGNTCFLNSVLQCLTHTPPLANYL------------------LSREHSKDCCNEGFCMMcALEAHVERALASSGPG 64
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 274 VTPKELFSQVCKKATRFKGYQQQDSQELLRYLLDGMRaeehqrvsKGILKAFGNStekldEEVKNKVKDYekkkaipSFV 353
Cdd:cd02661   65 SAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQ--------KACLDRFKKL-----KAVDPSSQET-------TLV 124
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 568997684 354 DRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKS 396
Cdd:cd02661  125 QQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGADSLEDA 167
zf-UBP pfam02148
Zn-finger in ubiquitin-hydrolases and other protein;
48-122 2.09e-19

Zn-finger in ubiquitin-hydrolases and other protein;


Pssm-ID: 460464  Cd Length: 63  Bit Score: 82.69  E-value: 2.09e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568997684   48 CQDCKTDNkvkdkpeeeaedpSVWLCLKCGHQGCGRdSQEQHALKHYTTPRsepHYLVLSLDNWSVWCYKCDEEV 122
Cdd:pfam02148   1 CSLCGNTS-------------NLWLCLTCGHVGCGR-YQNSHALEHYEETG---HPLAVNLSTLTVYCYPCDDYV 58
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
631-821 8.29e-18

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 85.62  E-value: 8.29e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 631 CSIQHCLYQFTRNEKLQDANKLLCEVCSRRQcngpkanikgdrrhvytNAKKQMLVSLAPPVLTLHLKRFQ--QAGFNLR 708
Cdd:cd02664  134 PSVQDLLNYFLSPEKLTGDNQYYCEKCASLQ-----------------DAEKEMKVTGAPEYLILTLLRFSydQKTHVRE 196
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 709 KVNKHIKFPEILDL-----------APFCTLKCKNVAEES--TRVLYSLYGVVEHSGT-MRSGHYTAYAKERTASchlSN 774
Cdd:cd02664  197 KIMDNVSINEVLSLpvrveskssesPLEKKEEESGDDGELvtRQVHYRLYAVVVHSGYsSESGHYFTYARDQTDA---DS 273
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 568997684 775 LVLHGDIPQDCEMESTKGQWFHISDTHVQAVPITKVLNSQ-------AYLLFYE 821
Cdd:cd02664  274 TGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTsrfpkdtPYILFYE 327
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
194-396 1.54e-16

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 81.65  E-value: 1.54e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 194 KGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPDLalteplevnleppgpLTLAMSQFLSEMQENKKRV 273
Cdd:cd02660    1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSC---------------LSCAMDEIFQEFYYSGDRS 65
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 274 -VTPKELFSQVCKKATRFKGYQQQDSQELLRYLLDGMraeeHQRVSKGilkafgnstekldeevknkVKDYEKKKAIPSF 352
Cdd:cd02660   66 pYGPINLLYLSWKHSRNLAGYSQQDAHEFFQFLLDQL----HTHYGGD-------------------KNEANDESHCNCI 122
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 568997684 353 VDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPvLDDQSGKKS 396
Cdd:cd02660  123 IHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLD-IPNKSTPSW 165
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
195-391 2.12e-16

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 80.84  E-value: 2.12e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 195 GLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVkieppdlalteplevnLEPPGPLTLAMSQFLSEMQeNKKRVV 274
Cdd:cd02657    1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGA----------------NQSSDNLTNALRDLFDTMD-KKQEPV 63
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 275 TPKELFSQVCKKATRFK------GYQQQDSQELLrylldgmraeehqrvsKGILKAFGNSTEKLDEEvknkvkdyekkka 348
Cdd:cd02657   64 PPIEFLQLLRMAFPQFAekqnqgGYAQQDAEECW----------------SQLLSVLSQKLPGAGSK------------- 114
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 568997684 349 iPSFVDRIFGGELTSTIMCDECRTVSLVH-ESFLDLSLPVLDDQ 391
Cdd:cd02657  115 -GSFIDQLFGIELETKMKCTESPDEEEVStESEYKLQCHISITT 157
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
632-809 5.39e-16

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 79.77  E-value: 5.39e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 632 SIQHCLYQFTRNEKLQDANKLLCEVCSRRQcngpkanikgdrrhvytNAKKQMLVSLAPPVLTLHLKRF---QQAGfNLR 708
Cdd:cd02668  157 TLEECIDEFLKEEQLTGDNQYFCESCNSKT-----------------DATRRIRLTTLPPTLNFQLLRFvfdRKTG-AKK 218
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 709 KVNKHIKFPEILDLAPFCTLKCKNVAEestrvlYSLYGVVEHSGT-MRSGHYTAYAKertaschlsnlvlhgdipqdcem 787
Cdd:cd02668  219 KLNASISFPEILDMGEYLAESDEGSYV------YELSGVLIHQGVsAYSGHYIAHIK----------------------- 269
                        170       180
                 ....*....|....*....|..
gi 568997684 788 ESTKGQWFHISDTHVQAVPITK 809
Cdd:cd02668  270 DEQTGEWYKFNDEDVEEMPGKP 291
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
630-821 6.22e-16

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 79.28  E-value: 6.22e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 630 ECSIQHCLYQFTRNEKLQDANKLLCEVCSRRQcngpkanikgdrrhvytNAKKQMLVSLAPPVLTLHLKRFQQAGfnlrK 709
Cdd:cd02663  146 NTSITSCLRQFSATETLCGRNKFYCDECCSLQ-----------------EAEKRMKIKKLPKILALHLKRFKYDE----Q 204
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 710 VNKHIK------FPeiLDLAPFCTlkcKNVAEESTRvLYSLYGVVEH--SGTMRsGHYTAYAKertaschlsnlvlhgdi 781
Cdd:cd02663  205 LNRYIKlfyrvvFP--LELRLFNT---TDDAENPDR-LYELVAVVVHigGGPNH-GHYVSIVK----------------- 260
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 568997684 782 pqdcemesTKGQWFHISDTHVQAVPITKVLN--------SQAYLLFYE 821
Cdd:cd02663  261 --------SHGGWLLFDDETVEKIDENAVEEffgdspnqATAYVLFYQ 300
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
589-764 4.14e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 77.24  E-value: 4.14e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 589 DEINIEIPNDSHSAPKVYEVMNEDPETafctlanreafSTDECSIQHCLYQFTRNEKLQDANKLLCEVCsrrqcngpkan 668
Cdd:cd02671  149 DFQDISVPVQESELSKSEESSEISPDP-----------KTEMKTLKWAISQFASVERIVGEDKYFCENC----------- 206
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 669 ikgdrrHVYTNAKKQMLVSLAPPVLTLHLKRFQQAGF------NLRKVNKHIkfpeildLAPFcTLKCKNVAEESTRVLY 742
Cdd:cd02671  207 ------HHYTEAERSLLFDKLPEVITIHLKCFAANGSefdcygGLSKVNTPL-------LTPL-KLSLEEWSTKPKNDVY 272
                        170       180
                 ....*....|....*....|...
gi 568997684 743 SLYGVVEHSG-TMRSGHYTAYAK 764
Cdd:cd02671  273 RLFAVVMHSGaTISSGHYTAYVR 295
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
195-399 1.43e-14

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 74.44  E-value: 1.43e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 195 GLSNLGNTCFFNAVMQNLSqtpvlrellkevkmsgtivkieppdlalteplevnleppgpltlamsqflsemqenkkrvv 274
Cdd:cd02257    1 GLNNLGNTCYLNSVLQALF------------------------------------------------------------- 19
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 275 tpkelfsqvckkatrfkgYQQQDSQELLRYLLDgmraeehqrvskgilkafgnsteKLDEEVKNKVKDYEKKKAIPSFVD 354
Cdd:cd02257   20 ------------------SEQQDAHEFLLFLLD-----------------------KLHEELKKSSKRTSDSSSLKSLIH 58
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 568997684 355 RIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKSIND 399
Cdd:cd02257   59 DLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGLPQVSLED 103
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
195-397 1.97e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 72.29  E-value: 1.97e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 195 GLSNLGNTCFFNAVMQNLSQTPVLRELLkevkmsgtivkieppdlaLTEPLEVNLEPPGPLTLAM-SQFLsEMQENKKRV 273
Cdd:cd02659    4 GLKNQGATCYMNSLLQQLYMTPEFRNAV------------------YSIPPTEDDDDNKSVPLALqRLFL-FLQLSESPV 64
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 274 VTPKELFSqvckkaTRFKG------YQQQDSQELLRYLLDgmraeehqrvskgilkafgnsteKLDEevknKVKDYEKKK 347
Cdd:cd02659   65 KTTELTDK------TRSFGwdslntFEQHDVQEFFRVLFD-----------------------KLEE----KLKGTGQEG 111
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 568997684 348 AIPSFvdriFGGELTSTIMCDECRTVSLVHESFLDLSLPVlddqSGKKSI 397
Cdd:cd02659  112 LIKNL----FGGKLVNYIICKECPHESEREEYFLDLQVAV----KGKKNL 153
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
195-387 2.30e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 68.49  E-value: 2.30e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 195 GLSNLGNTCFFNAVMQNLSQTPVLrELLKevkmsgtivkieppDLalteplevnleppgpltlamsqfLSEMQENKKR-- 272
Cdd:cd02663    1 GLENFGNTCYCNSVLQALYFENLL-TCLK--------------DL-----------------------FESISEQKKRtg 42
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 273 VVTPKELFSQVCKKATRFKGYQQQDSQELLRYLLDgmraeehqRVSKGILKafgnstEKLDEEVKNKVKDYEKKKAIPSF 352
Cdd:cd02663   43 VISPKKFITRLKRENELFDNYMHQDAHEFLNFLLN--------EIAEILDA------ERKAEKANRKLNNNNNAEPQPTW 108
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 568997684 353 VDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPV 387
Cdd:cd02663  109 VHEIFQGILTNETRCLTCETVSSRDETFLDLSIDV 143
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
675-811 6.97e-11

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 66.05  E-value: 6.97e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684  675 HVYTNAKKQMLVSLAPPVLTLHLKRFQqAGF---NLRKVNKHIKFPEILDLAPFCTLKCKNvaEESTRVLYSLYGVVEHS 751
Cdd:COG5077   364 HGLQDAKKGVIFESLPPVLHLQLKRFE-YDFerdMMVKINDRYEFPLEIDLLPFLDRDADK--SENSDAVYVLYGVLVHS 440
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684  752 GTMRSGHYTAYAKertaschlsnlvlhgdipqdcemESTKGQWFHISDTHVQAVPITKVL 811
Cdd:COG5077   441 GDLHEGHYYALLK-----------------------PEKDGRWYKFDDTRVTRATEKEVL 477
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
668-823 1.29e-10

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 63.28  E-value: 1.29e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 668 NIKGDRRHVYTNAKKQMlvslaPPVLTLHLKRFQQAGFNlRKVNKHIKfpEILDLaPFCTLKCKNVAEEstrVLYSLYGV 747
Cdd:COG5533  163 ELEVQAKQEYEVSFVKL-----PKILTIQLKRFANLGGN-QKIDTEVD--EKFEL-PVKHDQILNIVKE---TYYDLVGF 230
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568997684 748 VEHSGTMRSGHYTAYAKertaschlsnlvlhgdipqdcemesTKGQWFHISDTHVQAVPITKVLNS---QAYLLFYERI 823
Cdd:COG5533  231 VLHQGSLEGGHYIAYVK-------------------------KGGKWEKANDSDVTPVSEEEAINEkakNAYLYFYERI 284
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
195-390 3.42e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 62.51  E-value: 3.42e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 195 GLSNLGNTCFFNAVMQNLSQTpvlRELLKEVkmsgtivkieppdLALTEPLEVNLEPPgPLTLAMSQFLSEMQenKKRVV 274
Cdd:cd02664    1 GLINLGNTCYMNSVLQALFMA---KDFRRQV-------------LSLNLPRLGDSQSV-MKKLQLLQAHLMHT--QRRAE 61
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 275 TPKELFSQVCKKATrFKGYQQQDSQELLRYLLDgmraeehqrvskgilkafgnsteKLDeevknkvkdyekkkaipSFVD 354
Cdd:cd02664   62 APPDYFLEASRPPW-FTPGSQQDCSEYLRYLLD-----------------------RLH-----------------TLIE 100
                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 568997684 355 RIFGGELTSTIMCDECRTVSLVHESF--LDLSLPVLDD 390
Cdd:cd02664  101 KMFGGKLSTTIRCLNCNSTSARTERFrdLDLSFPSVQD 138
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
195-394 1.93e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 59.91  E-value: 1.93e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 195 GLSNLGNTCFFNAVMQNLSQTPVLRELLKEvkMSGTIVKIEppdlalteplevNLEppgpltlAMSQFLSEMQENKKRVV 274
Cdd:cd02671   26 GLNNLGNTCYLNSVLQVLYFCPGFKHGLKH--LVSLISSVE------------QLQ-------SSFLLNPEKYNDELANQ 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 275 TPKELFSQVCKKATRFKGYQQQDSQELLRYLLDGMRaeehqrvskgilkafgnstekldeevknkvkdyekkkaipSFVD 354
Cdd:cd02671   85 APRRLLNALREVNPMYEGYLQHDAQEVLQCILGNIQ----------------------------------------ELVE 124
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 568997684 355 RIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGK 394
Cdd:cd02671  125 KDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSK 164
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
195-399 6.64e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 58.20  E-value: 6.64e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 195 GLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPDLALTEPLEVNLEppgpLTLAMSQflseMQENKKRVV 274
Cdd:cd02668    1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQ----LQLIFAQ----LQFGNRSVV 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 275 TPKELFsqvckKATRFKGYQQQDSQELLRYLLDGMRAeehqrvskgilkafgnsteKLDEEVKNKVKdyekkkaipSFVD 354
Cdd:cd02668   73 DPSGFV-----KALGLDTGQQQDAQEFSKLFLSLLEA-------------------KLSKSKNPDLK---------NIVQ 119
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 568997684 355 RIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKSIND 399
Cdd:cd02668  120 DLFRGEYSYVTQCSKCGRESSLPSKFYELELQLKGHKTLEECIDE 164
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
681-821 9.12e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 57.73  E-value: 9.12e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 681 KKQMLVSLAPPVLTLHLKRFQ---QAGFNLrKVNKHIKFPEILDLAPFCTLKCknvaeestrvLYSLYGVVEHSG-TMRS 756
Cdd:cd02657  188 TKTSRISRLPKYLTVQFVRFFwkrDIQKKA-KILRKVKFPFELDLYELCTPSG----------YYELVAVITHQGrSADS 256
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568997684 757 GHYTAYAKertaschlsnlvlhgdipqdcemESTKGQWFHISDTHVQAVPITKVLN-------SQAYLLFYE 821
Cdd:cd02657  257 GHYVAWVR-----------------------RKNDGKWIKFDDDKVSEVTEEDILKlsgggdwHIAYILLYK 305
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
195-387 2.94e-08

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 55.37  E-value: 2.94e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 195 GLSNLGNTCFFNAVMQNLSQtpvlrellkevkmsgtivkieppdlalteplevnleppgpltlamsqflsemqenkkrvv 274
Cdd:cd02674    1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 275 tpkelfsqvckkatrfkgyQQQDSQELLRYLLDGMRaeehqrvskgilkafgnstekldeevknkvkdyekkkaipSFVD 354
Cdd:cd02674   21 -------------------DQQDAQEFLLFLLDGLH----------------------------------------SIIV 41
                        170       180       190
                 ....*....|....*....|....*....|...
gi 568997684 355 RIFGGELTSTIMCDECRTVSLVHESFLDLSLPV 387
Cdd:cd02674   42 DLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPI 74
ZnF_UBP smart00290
Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;
47-113 1.15e-07

Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;


Pssm-ID: 197632  Cd Length: 50  Bit Score: 48.90  E-value: 1.15e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568997684    47 ICQDCKTDNKVkdkpeeeaedpsvWLCLKCGHQGCGRdSQEQHALKHYttpRSEPHYLVLSLDNWSV 113
Cdd:smart00290   1 RCSVCGTIENL-------------WLCLTCGQVGCGR-YQNGHALEHF---EETGHPLVVKLGTQRV 50
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
195-396 1.22e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 54.25  E-value: 1.22e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 195 GLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPpdlalTEPLEVNLeppGPLTLAMsqfLSEmQENKKRVV 274
Cdd:cd02658    1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDP-----ANDLNCQL---IKLADGL---LSG-RYSKPASL 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 275 TPKELFSQVCKKATRFK-----GYQ------QQDSQELLRYLLDGMRAEEHQRVSKgilkafgNSTEKLDEEVKNKVKdy 343
Cdd:cd02658   69 KSENDPYQVGIKPSMFKaligkGHPefstmrQQDALEFLLHLIDKLDRESFKNLGL-------NPNDLFKFMIEDRLE-- 139
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 568997684 344 ekkkaipsfvdrifggeltstimCDECRTVSLVHESFLDLSLPVLDDQSGKKS 396
Cdd:cd02658  140 -----------------------CLSCKKVKYTSELSEILSLPVPKDEATEKE 169
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
677-821 6.43e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 48.86  E-value: 6.43e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 677 YTNAKKQMLVSLAPPVLTLHLKRFQ-QAGFNLRKVNKHIKFPEILDLAPfctlkcknvaeestrvlYSLYGVVEHSGT-M 754
Cdd:cd02658  203 KTTATKTTGFKTFPDYLVINMKRFQlLENWVPKKLDVPIDVPEELGPGK-----------------YELIAFISHKGTsV 265
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568997684 755 RSGHYTAYAKERTASchlsnlvlhgdipqdcemestKGQWFHISDTHVQAVPITKVLNSQAYLLFYE 821
Cdd:cd02658  266 HSGHYVAHIKKEIDG---------------------EGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311
Peptidase_C19N cd02670
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
687-821 5.08e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239135 [Multi-domain]  Cd Length: 241  Bit Score: 45.60  E-value: 5.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 687 SLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPF----------CTLKCKNVAEE----STRVLY--SLYGVVEH 750
Cdd:cd02670   96 AKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPDFvaddpracskCQLECRVCYDDkdfsPTCGKFklSLCSAVCH 175
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568997684 751 SGTMR-SGHYTAYAKERTaschlsnlvlhgDIPQDCEMESTKGQWF---HISDTHVQAVPI---TKVLNSQAYLLFYE 821
Cdd:cd02670  176 RGTSLeTGHYVAFVRYGS------------YSLTETDNEAYNAQWVffdDMADRDGVSNGFnipAARLLEDPYMLFYQ 241
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
195-226 2.16e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 43.51  E-value: 2.16e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 568997684 195 GLSNLGNTCFFNAVMQNLSQTPVLRELLKEVK 226
Cdd:cd02662    1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL 32
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
671-821 1.23e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 42.31  E-value: 1.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997684 671 GDRRHVYTNAKKQMLVSLAPPVLTLHLKRFQQAGFNLRKvNKHI-KFPEILDLAPFCTLKCKNVAEESTRvlYSLYGVVE 749
Cdd:cd02669  314 GKTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEK-NPTIvNFPIKNLDLSDYVHFDKPSLNLSTK--YNLVANIV 390
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568997684 750 HSGT-MRSGHYtayakertaSCHLSNlvlhgdipqdcemESTKgQWFHISDTHVQAVPITKVLNSQAYLLFYE 821
Cdd:cd02669  391 HEGTpQEDGTW---------RVQLRH-------------KSTN-KWFEIQDLNVKEVLPQLIFLSESYIQIWE 440
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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