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Conserved domains on  [gi|568968456|ref|XP_006514138|]
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E3 ubiquitin-protein ligase RNF126 isoform X2 [Mus musculus]

Protein Classification

zinc-ribbon domain-containing protein( domain architecture ID 10627308)

zinc-ribbon domain-containing protein similar to RNF126, an E3 ubiquitin ligase that collaborates with the BAG6 sortase complex to ubiquitinate hydrophobic substrates in the cytoplasm that are destined for proteasomal recycling.

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zinc_ribbon_9 pfam14369
zinc-ribbon;
10-40 1.93e-06

zinc-ribbon;


:

Pssm-ID: 433910  Cd Length: 35  Bit Score: 43.36  E-value: 1.93e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 568968456   10 RYFCHCCS--VEIVPRLPDYI-CPRCESGFIEEL 40
Cdd:pfam14369   2 RYWCHQCDrfVRIAPSEDSDVaCPRCGGGFVEEI 35
 
Name Accession Description Interval E-value
zinc_ribbon_9 pfam14369
zinc-ribbon;
10-40 1.93e-06

zinc-ribbon;


Pssm-ID: 433910  Cd Length: 35  Bit Score: 43.36  E-value: 1.93e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 568968456   10 RYFCHCCS--VEIVPRLPDYI-CPRCESGFIEEL 40
Cdd:pfam14369   2 RYWCHQCDrfVRIAPSEDSDVaCPRCGGGFVEEI 35
HybF COG0375
Hydrogenase maturation factor HypA/HybF, metallochaperone involved in Ni insertion ...
 7-38 3.48e-03

Hydrogenase maturation factor HypA/HybF, metallochaperone involved in Ni insertion [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440144  Cd Length: 113  Bit Score: 36.30  E-value: 3.48e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 568968456   7 QPGRYFCHCCSVEIVPRLPDYICPRCESGFIE 38
Cdd:COG0375   67 VPARARCRDCGKEFELEELFLRCPKCGSPDLE 98
 
Name Accession Description Interval E-value
zinc_ribbon_9 pfam14369
zinc-ribbon;
10-40 1.93e-06

zinc-ribbon;


Pssm-ID: 433910  Cd Length: 35  Bit Score: 43.36  E-value: 1.93e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 568968456   10 RYFCHCCS--VEIVPRLPDYI-CPRCESGFIEEL 40
Cdd:pfam14369   2 RYWCHQCDrfVRIAPSEDSDVaCPRCGGGFVEEI 35
HybF COG0375
Hydrogenase maturation factor HypA/HybF, metallochaperone involved in Ni insertion ...
 7-38 3.48e-03

Hydrogenase maturation factor HypA/HybF, metallochaperone involved in Ni insertion [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440144  Cd Length: 113  Bit Score: 36.30  E-value: 3.48e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 568968456   7 QPGRYFCHCCSVEIVPRLPDYICPRCESGFIE 38
Cdd:COG0375   67 VPARARCRDCGKEFELEELFLRCPKCGSPDLE 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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