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protein FAM184A isoform X8 [Mus musculus]
Protein Classification
kinesin family protein; PEPP family PH domain-containing protein ( domain architecture ID 13868461 )
kinesin family protein is a microtubule-dependent molecular motor that plays an important role in intracellular transport and in cell division and has an ATPase-containing motor domain; similar to N-type kinesins that are (+) end-directed motors and have an N-terminal motor domain| PEPP (phosphoinositol 3-phosphate-binding protein) family PH (pleckstrin homology) domain-containing protein similar to PH domain region of vertebrate pleckstrin homology domain-containing family A member 4/5/6/7
List of domain hits
Name
Accession
Description
Interval
E-value
FAM184
pfam15665 Family with sequence similarity 184, A and B; The function of FAM184 is not known.
57-267
2.02e-69
Family with sequence similarity 184, A and B; The function of FAM184 is not known.
Pssm-ID: 464788 [Multi-domain]
Cd Length: 211
Bit Score: 230.70
E-value: 2.02e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 57 VIYALNT R NDEH D A A IQALK D AHEEEIQQILAETREKIL L YKSK VT EELDL R R K IQ V LE A SLE D H MK MK QE ALTEFE A YK 136
Cdd:pfam15665 1 VIYALNT K NDEH E A E IQALK E AHEEEIQQILAETREKIL Q YKSK IG EELDL K R R IQ T LE E SLE Q H ER MK RQ ALTEFE Q YK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 137 RRVE DMQ L C AEA Q H V QR I V TM SREVEE IRKK FEE R L R SF G QLQ V QFE ND K QA ALE D LR TT HR L E V QELL KS Q QNH S S S VK 216
Cdd:pfam15665 81 RRVE ERE L K AEA E H R QR V V EL SREVEE AKRA FEE K L E SF E QLQ A QFE QE K RK ALE E LR AK HR Q E I QELL TT Q RAQ S A S SL 160
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568965745 217 LG QEK A E G LH RM E V E A L NNT V KE LR L EKK Q L I EEYE G KLSKAQ V FYEREL D 267
Cdd:pfam15665 161 AE QEK L E E LH KA E L E S L RKE V ED LR K EKK K L A EEYE Q KLSKAQ A FYEREL E 211
Smc super family
cl34174 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
364-922
7.56e-13
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
COG1196 :Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 73.05
E-value: 7.56e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 364 VES EL AAAR E R L QE QA S --------------- DLV L KASHIGM L Q A TQMTQ E VTIKD LE S E KSRANER L CQ LE E E RAF L Q 428
Cdd:COG1196 194 ILG EL ERQL E P L ER QA E kaeryrelkeelkel EAE L LLLKLRE L E A ELEEL E AELEE LE A E LEELEAE L AE LE A E LEE L R 273
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 429 SRTQS L DE E QKQQVL E LEKKVN E AK R TQ Q E -- YY E MELKN L QN RLE GEVAQ L N E AHGKTL E ELARKHHMAI E AVHSNASR 506
Cdd:COG1196 274 LELEE L EL E LEEAQA E EYELLA E LA R LE Q D ia RL E ERRRE L EE RLE ELEEE L A E LEEELE E LEEELEELEE E LEEAEEEL 353
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 507 DKIKLQTELE E QYKK E KLSLEEDKNQLQL EL ESLKQALGDKLTSANQEIGR L QDLVRKSEQG L GSA E GLISS L QDSQER L 586
Cdd:COG1196 354 EEAEAELAEA E EALL E AEAELAEAEEELE EL AEELLEALRAAAELAAQLEE L EEAEEALLER L ERL E EELEE L EEALAE L 433
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 587 QS E LDLTKGR L K E TKDALLNV E A E LQQERHEHEQT L ATMKEE E KLRVDRMAHDL E IKWTEN L RQ E cskl RQELRLQHE E D 666
Cdd:COG1196 434 EE E EEEEEEA L E E AAEEEAEL E E E EEALLELLAEL L EEAALL E AALAELLEELA E AAARLL L LL E ---- AEADYEGFL E G 509
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 667 K K S A MSQLLQLKEREKN A ARDSWQKKV E DL L nq RHS L GE AL HKSINN -------- I SL LK QNLELQLCQSQTSLQQLQ A Q 738
Cdd:COG1196 510 V K A A LLLAGLRGLAGAV A VLIGVEAAY E AA L -- EAA L AA AL QNIVVE ddevaaaa I EY LK AAKAGRATFLPLDKIRAR A A 587
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 739 FTQERQ R LTQELEELEEQHQQ R HKSLKEAHV --- L AFQ T MEEE - K E KEQ R ALE T HLQQKHSAE L QSLKDAHRE S ME G FRV 814
Cdd:COG1196 588 LAAALA R GAIGAAVDLVASDL R EADARYYVL gdt L LGR T LVAA r L E AAL R RAV T LAGRLREVT L EGEGGSAGG S LT G GSR 667
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 815 EMEQELQTLRFELED E GKAM LA SLRS EL NHQHA A SIDLL R HSHHQ E LAAAKM ELE RSIDISRRQSKEHMCRISD L Q EE -- 892
Cdd:COG1196 668 RELLAALLEAEAELE E LAER LA EEEL EL EEALL A EEEEE R ELAEA E EERLEE ELE EEALEEQLEAEREELLEEL L E EE el 747
570 580 590
....*....|....*....|....*....|
gi 568965745 893 L RHREHHITDLDKEVQH L HENINT L TK E L E 922
Cdd:COG1196 748 L EEEALEELPEPPDLEE L ERELER L ER E I E 777
PRK11281 super family
cl46976 mechanosensitive channel MscK;
274-449
1.72e-03
mechanosensitive channel MscK;
PRK11281 :Pssm-ID: 481316 [Multi-domain]
Cd Length: 1113
Bit Score: 42.59
E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 274 L FTAESLQASRDKEAD L RKEFQGQE A I LR KT --- IGK LK TELQMVQD E AS S L L DKC Q k L QMA LA TAENNV Q VL Q KQ L DDA 350
Cdd:PRK11281 69 L ALLDKIDRQKEETEQ L KQQLAQAP A K LR QA qae LEA LK DDNDEETR E TL S T L SLR Q - L ESR LA QTLDQL Q NA Q ND L AEY 147
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 351 KEGEMA L LSKHKEVESE L A A ARE RLQ E -------- QASDLV L KA S HIGM LQA T Q ------------- MTQEVTIK DL - ES 408
Cdd:PRK11281 148 NSQLVS L QTQPERAQAA L Y A NSQ RLQ Q irnllkgg KVGGKA L RP S QRVL LQA E Q allnaqndlqrks LEGNTQLQ DL l QK 227
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568965745 409 EKSRANE R LCQ LE EERAF LQ S ------ R T Q S ld E EQK Q QVLELEKKV 449
Cdd:PRK11281 228 QRDYLTA R IQR LE HQLQL LQ E ainskr L T L S -- E KTV Q EAQSQDEAA 272
Name
Accession
Description
Interval
E-value
FAM184
pfam15665 Family with sequence similarity 184, A and B; The function of FAM184 is not known.
57-267
2.02e-69
Family with sequence similarity 184, A and B; The function of FAM184 is not known.
Pssm-ID: 464788 [Multi-domain]
Cd Length: 211
Bit Score: 230.70
E-value: 2.02e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 57 VIYALNT R NDEH D A A IQALK D AHEEEIQQILAETREKIL L YKSK VT EELDL R R K IQ V LE A SLE D H MK MK QE ALTEFE A YK 136
Cdd:pfam15665 1 VIYALNT K NDEH E A E IQALK E AHEEEIQQILAETREKIL Q YKSK IG EELDL K R R IQ T LE E SLE Q H ER MK RQ ALTEFE Q YK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 137 RRVE DMQ L C AEA Q H V QR I V TM SREVEE IRKK FEE R L R SF G QLQ V QFE ND K QA ALE D LR TT HR L E V QELL KS Q QNH S S S VK 216
Cdd:pfam15665 81 RRVE ERE L K AEA E H R QR V V EL SREVEE AKRA FEE K L E SF E QLQ A QFE QE K RK ALE E LR AK HR Q E I QELL TT Q RAQ S A S SL 160
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568965745 217 LG QEK A E G LH RM E V E A L NNT V KE LR L EKK Q L I EEYE G KLSKAQ V FYEREL D 267
Cdd:pfam15665 161 AE QEK L E E LH KA E L E S L RKE V ED LR K EKK K L A EEYE Q KLSKAQ A FYEREL E 211
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
364-922
7.56e-13
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 73.05
E-value: 7.56e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 364 VES EL AAAR E R L QE QA S --------------- DLV L KASHIGM L Q A TQMTQ E VTIKD LE S E KSRANER L CQ LE E E RAF L Q 428
Cdd:COG1196 194 ILG EL ERQL E P L ER QA E kaeryrelkeelkel EAE L LLLKLRE L E A ELEEL E AELEE LE A E LEELEAE L AE LE A E LEE L R 273
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 429 SRTQS L DE E QKQQVL E LEKKVN E AK R TQ Q E -- YY E MELKN L QN RLE GEVAQ L N E AHGKTL E ELARKHHMAI E AVHSNASR 506
Cdd:COG1196 274 LELEE L EL E LEEAQA E EYELLA E LA R LE Q D ia RL E ERRRE L EE RLE ELEEE L A E LEEELE E LEEELEELEE E LEEAEEEL 353
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 507 DKIKLQTELE E QYKK E KLSLEEDKNQLQL EL ESLKQALGDKLTSANQEIGR L QDLVRKSEQG L GSA E GLISS L QDSQER L 586
Cdd:COG1196 354 EEAEAELAEA E EALL E AEAELAEAEEELE EL AEELLEALRAAAELAAQLEE L EEAEEALLER L ERL E EELEE L EEALAE L 433
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 587 QS E LDLTKGR L K E TKDALLNV E A E LQQERHEHEQT L ATMKEE E KLRVDRMAHDL E IKWTEN L RQ E cskl RQELRLQHE E D 666
Cdd:COG1196 434 EE E EEEEEEA L E E AAEEEAEL E E E EEALLELLAEL L EEAALL E AALAELLEELA E AAARLL L LL E ---- AEADYEGFL E G 509
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 667 K K S A MSQLLQLKEREKN A ARDSWQKKV E DL L nq RHS L GE AL HKSINN -------- I SL LK QNLELQLCQSQTSLQQLQ A Q 738
Cdd:COG1196 510 V K A A LLLAGLRGLAGAV A VLIGVEAAY E AA L -- EAA L AA AL QNIVVE ddevaaaa I EY LK AAKAGRATFLPLDKIRAR A A 587
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 739 FTQERQ R LTQELEELEEQHQQ R HKSLKEAHV --- L AFQ T MEEE - K E KEQ R ALE T HLQQKHSAE L QSLKDAHRE S ME G FRV 814
Cdd:COG1196 588 LAAALA R GAIGAAVDLVASDL R EADARYYVL gdt L LGR T LVAA r L E AAL R RAV T LAGRLREVT L EGEGGSAGG S LT G GSR 667
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 815 EMEQELQTLRFELED E GKAM LA SLRS EL NHQHA A SIDLL R HSHHQ E LAAAKM ELE RSIDISRRQSKEHMCRISD L Q EE -- 892
Cdd:COG1196 668 RELLAALLEAEAELE E LAER LA EEEL EL EEALL A EEEEE R ELAEA E EERLEE ELE EEALEEQLEAEREELLEEL L E EE el 747
570 580 590
....*....|....*....|....*....|
gi 568965745 893 L RHREHHITDLDKEVQH L HENINT L TK E L E 922
Cdd:COG1196 748 L EEEALEELPEPPDLEE L ERELER L ER E I E 777
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
278-1019
4.21e-11
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 67.39
E-value: 4.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 278 E S LQ ASRDKEADLRK E FQGQEAI L RKTIGK L KT E LQMVQD E ASS L LDKCQK L QMALATA E NNV Q V L QKQ L DD akegema L 357
Cdd:TIGR02168 242 E E LQ EELKEAEEELE E LTAELQE L EEKLEE L RL E VSELEE E IEE L QKELYA L ANEISRL E QQK Q I L RER L AN ------- L 314
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 358 LSKHK E V E SE L AAARER L Q E Q A SD L VLKASHIGM L QATQMTQ E VTIKD LE S E KSRANE RL CQ LEE ER aflqsrtqsld E E 437
Cdd:TIGR02168 315 ERQLE E L E AQ L EELESK L D E L A EE L AELEEKLEE L KEELESL E AELEE LE A E LEELES RL EE LEE QL ----------- E T 383
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 438 QKQQ V LE LE KKVNEA k RTQQ E YY E ME L KN L QN R L E GEVAQ l N E AHG K T LEE LAR K HHM A IEAVHSNASRDKIKLQTE LEE 517
Cdd:TIGR02168 384 LRSK V AQ LE LQIASL - NNEI E RL E AR L ER L ED R R E RLQQE - I E ELL K K LEE AEL K ELQ A ELEELEEELEELQEELER LEE 461
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 518 QYKKEKLS LEE DKNQ L QLELES L K Q a L GDK L T S ANQEIGR L QDL ------ VR K SEQ GL GSAE G LI S S L QDSQ E RLQSELD 591
Cdd:TIGR02168 462 ALEELREE LEE AEQA L DAAERE L A Q - L QAR L D S LERLQEN L EGF segvka LL K NQS GL SGIL G VL S E L ISVD E GYEAAIE 540
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 592 LTK G RL ------ KETKD A LLNVEAEL Q Q E RHEHEQTLATMKEEEKLRVDRMAHDLE I KWTENLRQECS K LRQE LR LQHE - 664
Cdd:TIGR02168 541 AAL G GR lqavvv ENLNA A KKAIAFLK Q N E LGRVTFLPLDSIKGTEIQGNDREILKN I EGFLGVAKDLV K FDPK LR KALS y 620
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 665 -------- E D KKS A MSQLLQ L KEREKNAAR D SWQKKVEDLLNQRHSLGEA -- L HKS i NN I SL L KQNL E LQLCQSQTSLQQ 734
Cdd:TIGR02168 621 llggvlvv D D LDN A LELAKK L RPGYRIVTL D GDLVRPGGVITGGSAKTNS si L ERR - RE I EE L EEKI E ELEEKIAELEKA 699
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 735 L QAQFTQERQRLTQELEELE E QHQQRHKSLKEAHV LA FQTM E E E KEK E QR A LETHLQQKHS AE LQS L KDA h R E SM E GFRV 814
Cdd:TIGR02168 700 L AELRKELEELEEELEQLRK E LEELSRQISALRKD LA RLEA E V E QLE E RI A QLSKELTELE AE IEE L EER - L E EA E EELA 778
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 815 E M E Q E LQT L RFEL E d EG K AM L AS LR SE L NHQH A A sidllrhsh HQE L AAAKME L ERSIDISR R QSKEHMC R IS DL Q E ELR 894
Cdd:TIGR02168 779 E A E A E IEE L EAQI E - QL K EE L KA LR EA L DELR A E --------- LTL L NEEAAN L RERLESLE R RIAATER R LE DL E E QIE 848
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 895 HREHH I TD L DK E VQH L H E N I NT L TK ELE LKGK E ilrv R SESNQQMR L HEQD L ---- NKRL E K E LDVMTADH - L R E KNIMR 969
Cdd:TIGR02168 849 ELSED I ES L AA E IEE L E E L I EE L ES ELE ALLN E ---- R ASLEEALA L LRSE L eels EELR E L E SKRSELRR e L E E LREKL 924
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 568965745 970 A DFN -------- KTNE L LKEINAALQVS LE DM E EKYLMR E SRP E DIQ - MIAE L KSL I T E 1019
Cdd:TIGR02168 925 A QLE lrleglev RIDN L QERLSEEYSLT LE EA E ALENKI E DDE E EAR r RLKR L ENK I K E 983
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
30-599
1.06e-09
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 62.65
E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 30 A Q L AGHNMDYSQDMHLKMSKKIAQ L TKVIYA L NTRND E HD A AIQA L KDAH EE EIQQI laetrekilly KSKVT EE LD L RR 109
Cdd:COG1196 227 A E L LLLKLRELEAELEELEAELEE L EAELEE L EAELA E LE A ELEE L RLEL EE LELEL ----------- EEAQA EE YE L LA 295
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 110 KIQV LE ASLEDHMKMKQ E ALTEF E AYKRRVEDMQL c AEAQHVQRIVTMSR E V EE IRKKF EE RLRSFGQLQVQFENDKQAA 189
Cdd:COG1196 296 ELAR LE QDIARLEERRR E LEERL E ELEEELAELEE - ELEELEEELEELEE E L EE AEEEL EE AEAELAEAEEALLEAEAEL 374
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 190 L E DLRTTHR L EVQE L - LKSQQNHSSSVKLGQ E K AE GLHRMEV E A L NNTVK EL RLEKKQ L I EE Y E g KLSK A QVFYER E LDN 268
Cdd:COG1196 375 A E AEEELEE L AEEL L e ALRAAAELAAQLEEL E E AE EALLERL E R L EEELE EL EEALAE L E EE E E - EEEE A LEEAAE E EAE 453
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 269 L KRSQLFTA E S L QASRDKE A D L RKEFQGQEAI L RKTIGK L KTE L QMVQ D EASS L LDK cq K LQMA LA TAENNVQVLQKQLD 348
Cdd:COG1196 454 L EEEEEALL E L L AELLEEA A L L EAALAELLEE L AEAAAR L LLL L EAEA D YEGF L EGV -- K AALL LA GLRGLAGAVAVLIG 531
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 349 DAKEG E M AL lskhke VESEL AA ARERLQ E QASDLVLKASHIGMLQ A TQM T QEVTI K DLESEKSR A NERLCQLEEERAFLQ 428
Cdd:COG1196 532 VEAAY E A AL ------ EAALA AA LQNIVV E DDEVAAAAIEYLKAAK A GRA T FLPLD K IRARAALA A ALARGAIGAAVDLVA 605
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 429 S RTQSL D EEQKQQVLE L EKKVNE A K R TQQEYYEMELKNLQN R LEGEVAQLNE A H G KTLEELA R KHHM A IEAVHSNASRDK 508
Cdd:COG1196 606 S DLREA D ARYYVLGDT L LGRTLV A A R LEAALRRAVTLAGRL R EVTLEGEGGS A G G SLTGGSR R ELLA A LLEAEAELEELA 685
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 509 IK L QT E LE E QYKKEKLSL EE DK -- NQLQL E LESLKQALGDKLTSANQ E IGR L QDLVRKS E QG L GSAEGLISSLQDSQ E R L 586
Cdd:COG1196 686 ER L AE E EL E LEEALLAEE EE ER el AEAEE E RLEEELEEEALEEQLEA E REE L LEELLEE E EL L EEEALEELPEPPDL E E L 765
570
....*....|...
gi 568965745 587 QS EL DLTKGRLKE 599
Cdd:COG1196 766 ER EL ERLEREIEA 778
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
107-451
2.08e-06
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 51.99
E-value: 2.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 107 L RRKIQVLEASLEDHM K MKQEALT E F E AY K R R V E DMQ lcaeaqhv QRIVTMSR E V E EIRKKFE E RLRSFGQ L QVQFEN d K 186
Cdd:TIGR02169 707 L SQELSDASRKIGEIE K EIEQLEQ E E E KL K E R L E ELE -------- EDLSSLEQ E I E NVKSELK E LEARIEE L EEDLHK - L 777
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 187 QA AL E DL rtt HRLEVQELLKSQ Q NHS S SV klgqeka E GLHRMEVEA L NNT vk E LR L EKKQ L IE EY EG K LSKAQVFYERE L 266
Cdd:TIGR02169 778 EE AL N DL --- EARLSHSRIPEI Q AEL S KL ------- E EEVSRIEAR L REI -- E QK L NRLT L EK EY LE K EIQELQEQRID L 845
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 267 DNLKR S QLFTA E S L QASRDKEADLRK E FQGQEAI L RKTI G K LK T E LQMVQDEASS L LD K CQK L QMALATAENNVQV L QKQ 346
Cdd:TIGR02169 846 KEQIK S IEKEI E N L NGKKEELEEELE E LEAALRD L ESRL G D LK K E RDELEAQLRE L ER K IEE L EAQIEKKRKRLSE L KAK 925
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 347 L D dakegem AL LSKHK E V E SELAAAR E RLQ E QA S DLVLK A SHIGMLQATQMTQE V T --- I KDL E SEKS R AN E --- RLCQ L 420
Cdd:TIGR02169 926 L E ------- AL EEELS E I E DPKGEDE E IPE E EL S LEDVQ A ELQRVEEEIRALEP V N mla I QEY E EVLK R LD E lke KRAK L 998
330 340 350
....*....|....*....|....*....|.
gi 568965745 421 EEER AFLQS R TQSLDEEQKQQVL E LEKKV NE 451
Cdd:TIGR02169 999 EEER KAILE R IEEYEKKKREVFM E AFEAI NE 1029
SMC_N
pfam02463 RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
183-1029
2.93e-05
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain]
Cd Length: 1161
Bit Score: 48.43
E-value: 2.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 183 E NDKQ A A L EDLRTTHR L EVQE L LKSQQNHSSSVK L GQEKAEGLHRMEVEALNNTVK E LRLEKKQ L IEEYEGKLSKAQVFY 262
Cdd:pfam02463 181 E TENL A E L IIDLEELK L QELK L KEQAKKALEYYQ L KEKLELEEEYLLYLDYLKLNE E RIDLLQE L LRDEQEEIESSKQEI 260
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 263 E R E LDN L KRSQLFTA E SLQASRDK E a DLR K EFQGQ E AI L RKTIG KL KTELQMVQDEASSLLDKCQ K LQMA L ATAENNVQV 342
Cdd:pfam02463 261 E K E EEK L AQVLKENK E EEKEKKLQ E - EEL K LLAKE E EE L KSELL KL ERRKVDDEEKLKESEKEKK K AEKE L KKEKEEIEE 339
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 343 L Q K Q L DDAKEGEM A LLSKHK E V E SELAAARERLQ E QASDLV L KASHIGMLQATQMTQEVTIKDL E S E KSRAN E RLC QLE E 422
Cdd:pfam02463 340 L E K E L KELEIKRE A EEEEEE E L E KLQEKLEQLEE E LLAKKK L ESERLSSAAKLKEEELELKSEE E K E AQLLL E LAR QLE D 419
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 423 ERAFLQSRTQSLD EE QKQQVLELEK K VN E A K RTQQEYYEME LK NLQNRLEG E VAQLNE ahgktleelarkh HMAIEAVHS 502
Cdd:pfam02463 420 LLKEEKKEELEIL EE EEESIELKQG K LT E E K EELEKQELKL LK DELELKKS E DLLKET ------------- QLVKLQEQL 486
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 503 NASRDKI KL QTELEEQY K KEKLSLEEDKNQLQLELESLKQ A L G DKLTSANQEIGRLQDLVR k SEQGLG SA EGLISSLQDS 582
Cdd:pfam02463 487 ELLLSRQ KL EERSQKES K ARSGLKVLLALIKDGVGGRIIS A H G RLGDLGVAVENYKVAIST - AVIVEV SA TADEVEERQK 565
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 583 QE R LQS EL D L TKGR L KETKDA L LNVEAELQQERHEHEQT LA TMKEEEKLRVDRMAHDLEIKWTENLRQECSKLRQELRLQ 662
Cdd:pfam02463 566 LV R ALT EL P L GARK L RLLIPK L KLPLKSIAVLEIDPILN LA QLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKE 645
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 663 HEED K KSAMSQL L QL K ERE K NAARDSWQKKV E DLLN Q RHSLG E ALHKS I NNIS L LKQNL E LQLCQSQTS L QQLQAQFTQE 742
Cdd:pfam02463 646 SGLR K GVSLEEG L AE K SEV K ASLSELTKELL E IQEL Q EKAES E LAKEE I LRRQ L EIKKK E QREKEELKK L KLEAEELLAD 725
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 743 R QRLT Q ELEEL E EQHQQRHKSLK E AHVLAFQTME EEKE K E QRA L ETHLQQKHSAELQSL K DAHR E SM E GFRVEM E Q EL QT 822
Cdd:pfam02463 726 R VQEA Q DKINE E LKLLKQKIDEE E EEEEKSRLKK EEKE E E KSE L SLKEKELAEEREKTE K LKVE E EK E EKLKAQ E E EL RA 805
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 823 L RF EL ED E GKAMLASLRSELNHQHA as IDLLRHSHHQ EL AAAKMELERSIDISR R QSK E HMCRISDLQEE L RHR E HHITD 902
Cdd:pfam02463 806 L EE EL KE E AELLEEEQLLIEQEEKI -- KEEELEELAL EL KEEQKLEKLAEEELE R LEE E ITKEELLQELL L KEE E LEEQK 883
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 903 L DK E VQHLH E NINTLT KELE LKGKEILRVRSES N QQM r LHEQDLNKR L E K ELDVMTADH L R E KNIMRADF N KTN E LLKEI 982
Cdd:pfam02463 884 L KD E LESKE E KEKEEK KELE EESQKLNLLEEKE N EIE - ERIKEEAEI L L K YEEEPEELL L E E ADEKEKEE N NKE E EEERN 962
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|.
gi 568965745 983 NAA L QVSL E DMEEKYLMR E SRP E DIQ ---- MIA E LKS L IT E RDQV I KKL IE 1029
Cdd:pfam02463 963 KRL L LAKE E LGKVNLMAI E EFE E KEE rynk DEL E KER L EE E KKKL I RAI IE 1013
PTZ00121
PTZ00121 MAEBL; Provisional
404-833
7.33e-05
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 47.06
E-value: 7.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 404 K DL E SE K SR A NERLCQL EE ERA fl QSRTQSLDE E QKQQVL E LEKKVN EA KRTQQ E YYEMELKNLQNRL E g E VAQLN EA HG 483
Cdd:PTZ00121 1322 K KA E EA K KK A DAAKKKA EE AKK -- AAEAAKAEA E AAADEA E AAEEKA EA AEKKK E EAKKKADAAKKKA E - E KKKAD EA KK 1398
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 484 K T l EE LAR K HHMAIE A VHSNASR D KI K LQT E LEEQYKKE K LSL EE D K NQLQLELESLKQALGDKLTSANQ E IGRLQDLVR 563
Cdd:PTZ00121 1399 K A - EE DKK K ADELKK A AAAKKKA D EA K KKA E EKKKADEA K KKA EE A K KADEAKKKAEEAKKAEEAKKKAE E AKKADEAKK 1477
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 564 K S E QGLGSA E gliss LQDSQ E RLQSEL D LT K GRLKET K D A LLNVE AE LQQERH E HEQTLATM K EE E KLRVDRMAHDL E I K 643
Cdd:PTZ00121 1478 K A E EAKKAD E ----- AKKKA E EAKKKA D EA K KAAEAK K K A DEAKK AE EAKKAD E AKKAEEAK K AD E AKKAEEKKKAD E L K 1552
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 644 WT E N L RQECS K LRQ E LRLQH EEDK KS A MSQLLQL K ER E KNAARDSWQKKV E DLLNQRHSLGE A LHKS I NNIS L L K QNL E L 723
Cdd:PTZ00121 1553 KA E E L KKAEE K KKA E EAKKA EEDK NM A LRKAEEA K KA E EARIEEVMKLYE E EKKMKAEEAKK A EEAK I KAEE L K K AEE E K 1632
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 724 QLCQSQTSLQQLQAQFTQ E RQRLTQ E LEELEEQHQQRHKSL K EAHVL A FQTM E E EK EKEQRALETHLQQ K HSA EL QSLKD 803
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAE E LKKAEE E NKIKAAEEAKKAEED K KKAEE A KKAE E D EK KAAEALKKEAEEA K KAE EL KKKEA 1712
410 420 430
....*....|....*....|....*....|....
gi 568965745 804 AHRESM E GFRVEM E QEL ---- QTLRFEL ED EG KA 833
Cdd:PTZ00121 1713 EEKKKA E ELKKAE E ENK ikae EAKKEAE ED KK KA 1746
PRK11281
PRK11281 mechanosensitive channel MscK;
274-449
1.72e-03
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain]
Cd Length: 1113
Bit Score: 42.59
E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 274 L FTAESLQASRDKEAD L RKEFQGQE A I LR KT --- IGK LK TELQMVQD E AS S L L DKC Q k L QMA LA TAENNV Q VL Q KQ L DDA 350
Cdd:PRK11281 69 L ALLDKIDRQKEETEQ L KQQLAQAP A K LR QA qae LEA LK DDNDEETR E TL S T L SLR Q - L ESR LA QTLDQL Q NA Q ND L AEY 147
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 351 KEGEMA L LSKHKEVESE L A A ARE RLQ E -------- QASDLV L KA S HIGM LQA T Q ------------- MTQEVTIK DL - ES 408
Cdd:PRK11281 148 NSQLVS L QTQPERAQAA L Y A NSQ RLQ Q irnllkgg KVGGKA L RP S QRVL LQA E Q allnaqndlqrks LEGNTQLQ DL l QK 227
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568965745 409 EKSRANE R LCQ LE EERAF LQ S ------ R T Q S ld E EQK Q QVLELEKKV 449
Cdd:PRK11281 228 QRDYLTA R IQR LE HQLQL LQ E ainskr L T L S -- E KTV Q EAQSQDEAA 272
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
232-471
7.03e-03
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 40.13
E-value: 7.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 232 A LNNTVK E LRL E KK QL --- I E E Y E GK L SKAQVFYERE L DN L KRSQLFT A ESLQAS R DK E AD L r KEFQGQE A I L R K T I GK L 308
Cdd:COG4942 17 A QADAAA E AEA E LE QL qqe I A E L E KE L AALKKEEKAL L KQ L AALERRI A ALARRI R AL E QE L - AALEAEL A E L E K E I AE L 95
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 309 KT EL QMVQD E ASS LL DKCQK L Q ----- MA L ATA E NNVQVLQKQ -- L DDAKEGEMALLSKHKEVES ELAA A R ER L QEQASD 381
Cdd:COG4942 96 RA EL EAQKE E LAE LL RALYR L G rqppl AL L LSP E DFLDAVRRL qy L KYLAPARREQAEELRADLA ELAA L R AE L EAERAE 175
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 382 L vlkashigml Q A TQMTQ E VTIKD LE SE K SRANER L CQ LE E E R A F L QSRTQS L DE E QKQQVLELEKKVN EA KRTQQEYYE 461
Cdd:COG4942 176 L ---------- E A LLAEL E EERAA LE AL K AERQKL L AR LE K E L A E L AAELAE L QQ E AEELEALIARLEA EA AAAAERTPA 245
250
....*....|
gi 568965745 462 MELKN L QNR L 471
Cdd:COG4942 246 AGFAA L KGK L 255
PRK03918
PRK03918 DNA double-strand break repair ATPase Rad50;
69-608
8.26e-03
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain]
Cd Length: 880
Bit Score: 40.43
E-value: 8.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 69 DAA I QA L KD -- AHE E E I QQILA E TREKILLYKSKVT E ELDLRRKIQVLEAS LE DHM K MKQ E ALT E F E AYKRRV E DMQLCA 146
Cdd:PRK03918 175 KRR I ER L EK fi KRT E N I EELIK E KEKELEEVLREIN E ISSELPELREELEK LE KEV K ELE E LKE E I E ELEKEL E SLEGSK 254
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 147 EAQH v QR I VTMSREV EE IR K KF EE RLRSFGQ L - QVQFENDKQAA L EDLRTTHRL E VQ E LL K SQQNHSSSVKLGQ E KAE gl 225
Cdd:PRK03918 255 RKLE - EK I RELEERI EE LK K EI EE LEEKVKE L k ELKEKAEEYIK L SEFYEEYLD E LR E IE K RLSRLEEEINGIE E RIK -- 331
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 226 hrm E V E ALNNTVK EL RLEK K Q L IEEY E g K L SKAQVF YE RELDNLKRSQLFTAESLQASRD K EADLRK E FQGQEAILRKT I 305
Cdd:PRK03918 332 --- E L E EKEERLE EL KKKL K E L EKRL E - E L EERHEL YE EAKAKKEELERLKKRLTGLTPE K LEKELE E LEKAKEEIEEE I 407
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 306 G K LKTELQMVQD E ASS L ldkc Q K LQMA L AT A ENNVQ V LQKQ L DDAKEG E M --------- ALLSKH KE V E SELAAA R ER L Q 376
Cdd:PRK03918 408 S K ITARIGELKK E IKE L ---- K K AIEE L KK A KGKCP V CGRE L TEEHRK E L leeytaelk RIEKEL KE I E EKERKL R KE L R 483
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 377 E QASD L VLKASH I GMLQATQMTQ E VTI K ---- D LE s E KSRAN E RLCQ L E E ERAF L QSRTQ SL DE E QK q QVL EL E KK VN E A 452
Cdd:PRK03918 484 E LEKV L KKESEL I KLKELAEQLK E LEE K lkky N LE - E LEKKA E EYEK L K E KLIK L KGEIK SL KK E LE - KLE EL K KK LA E L 561
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 453 KRTQQ E y Y E M EL KN L QNR LE GEVAQLN E AHGKT L E EL ARKHHMAI E AVHS nasrd KIK L QT E LE E Q y KK EKLS L EEDKNQ 532
Cdd:PRK03918 562 EKKLD E - L E E EL AE L LKE LE ELGFESV E ELEER L K EL EPFYNEYL E LKDA ----- EKE L ER E EK E L - KK LEEE L DKAFEE 634
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 533 L QL --- E LE S L KQA L GDKLTSANQ E - IGR L QDLVRKSEQG L GSAEGLISS L QDSQ E RLQSE L DLT K GR L K E TKD A LLNV E 608
Cdd:PRK03918 635 L AE tek R LE E L RKE L EELEKKYSE E e YEE L REEYLELSRE L AGLRAELEE L EKRR E EIKKT L EKL K EE L E E REK A KKEL E 714
Name
Accession
Description
Interval
E-value
FAM184
pfam15665 Family with sequence similarity 184, A and B; The function of FAM184 is not known.
57-267
2.02e-69
Family with sequence similarity 184, A and B; The function of FAM184 is not known.
Pssm-ID: 464788 [Multi-domain]
Cd Length: 211
Bit Score: 230.70
E-value: 2.02e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 57 VIYALNT R NDEH D A A IQALK D AHEEEIQQILAETREKIL L YKSK VT EELDL R R K IQ V LE A SLE D H MK MK QE ALTEFE A YK 136
Cdd:pfam15665 1 VIYALNT K NDEH E A E IQALK E AHEEEIQQILAETREKIL Q YKSK IG EELDL K R R IQ T LE E SLE Q H ER MK RQ ALTEFE Q YK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 137 RRVE DMQ L C AEA Q H V QR I V TM SREVEE IRKK FEE R L R SF G QLQ V QFE ND K QA ALE D LR TT HR L E V QELL KS Q QNH S S S VK 216
Cdd:pfam15665 81 RRVE ERE L K AEA E H R QR V V EL SREVEE AKRA FEE K L E SF E QLQ A QFE QE K RK ALE E LR AK HR Q E I QELL TT Q RAQ S A S SL 160
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568965745 217 LG QEK A E G LH RM E V E A L NNT V KE LR L EKK Q L I EEYE G KLSKAQ V FYEREL D 267
Cdd:pfam15665 161 AE QEK L E E LH KA E L E S L RKE V ED LR K EKK K L A EEYE Q KLSKAQ A FYEREL E 211
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
364-922
7.56e-13
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 73.05
E-value: 7.56e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 364 VES EL AAAR E R L QE QA S --------------- DLV L KASHIGM L Q A TQMTQ E VTIKD LE S E KSRANER L CQ LE E E RAF L Q 428
Cdd:COG1196 194 ILG EL ERQL E P L ER QA E kaeryrelkeelkel EAE L LLLKLRE L E A ELEEL E AELEE LE A E LEELEAE L AE LE A E LEE L R 273
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 429 SRTQS L DE E QKQQVL E LEKKVN E AK R TQ Q E -- YY E MELKN L QN RLE GEVAQ L N E AHGKTL E ELARKHHMAI E AVHSNASR 506
Cdd:COG1196 274 LELEE L EL E LEEAQA E EYELLA E LA R LE Q D ia RL E ERRRE L EE RLE ELEEE L A E LEEELE E LEEELEELEE E LEEAEEEL 353
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 507 DKIKLQTELE E QYKK E KLSLEEDKNQLQL EL ESLKQALGDKLTSANQEIGR L QDLVRKSEQG L GSA E GLISS L QDSQER L 586
Cdd:COG1196 354 EEAEAELAEA E EALL E AEAELAEAEEELE EL AEELLEALRAAAELAAQLEE L EEAEEALLER L ERL E EELEE L EEALAE L 433
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 587 QS E LDLTKGR L K E TKDALLNV E A E LQQERHEHEQT L ATMKEE E KLRVDRMAHDL E IKWTEN L RQ E cskl RQELRLQHE E D 666
Cdd:COG1196 434 EE E EEEEEEA L E E AAEEEAEL E E E EEALLELLAEL L EEAALL E AALAELLEELA E AAARLL L LL E ---- AEADYEGFL E G 509
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 667 K K S A MSQLLQLKEREKN A ARDSWQKKV E DL L nq RHS L GE AL HKSINN -------- I SL LK QNLELQLCQSQTSLQQLQ A Q 738
Cdd:COG1196 510 V K A A LLLAGLRGLAGAV A VLIGVEAAY E AA L -- EAA L AA AL QNIVVE ddevaaaa I EY LK AAKAGRATFLPLDKIRAR A A 587
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 739 FTQERQ R LTQELEELEEQHQQ R HKSLKEAHV --- L AFQ T MEEE - K E KEQ R ALE T HLQQKHSAE L QSLKDAHRE S ME G FRV 814
Cdd:COG1196 588 LAAALA R GAIGAAVDLVASDL R EADARYYVL gdt L LGR T LVAA r L E AAL R RAV T LAGRLREVT L EGEGGSAGG S LT G GSR 667
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 815 EMEQELQTLRFELED E GKAM LA SLRS EL NHQHA A SIDLL R HSHHQ E LAAAKM ELE RSIDISRRQSKEHMCRISD L Q EE -- 892
Cdd:COG1196 668 RELLAALLEAEAELE E LAER LA EEEL EL EEALL A EEEEE R ELAEA E EERLEE ELE EEALEEQLEAEREELLEEL L E EE el 747
570 580 590
....*....|....*....|....*....|
gi 568965745 893 L RHREHHITDLDKEVQH L HENINT L TK E L E 922
Cdd:COG1196 748 L EEEALEELPEPPDLEE L ERELER L ER E I E 777
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
278-1019
4.21e-11
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 67.39
E-value: 4.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 278 E S LQ ASRDKEADLRK E FQGQEAI L RKTIGK L KT E LQMVQD E ASS L LDKCQK L QMALATA E NNV Q V L QKQ L DD akegema L 357
Cdd:TIGR02168 242 E E LQ EELKEAEEELE E LTAELQE L EEKLEE L RL E VSELEE E IEE L QKELYA L ANEISRL E QQK Q I L RER L AN ------- L 314
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 358 LSKHK E V E SE L AAARER L Q E Q A SD L VLKASHIGM L QATQMTQ E VTIKD LE S E KSRANE RL CQ LEE ER aflqsrtqsld E E 437
Cdd:TIGR02168 315 ERQLE E L E AQ L EELESK L D E L A EE L AELEEKLEE L KEELESL E AELEE LE A E LEELES RL EE LEE QL ----------- E T 383
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 438 QKQQ V LE LE KKVNEA k RTQQ E YY E ME L KN L QN R L E GEVAQ l N E AHG K T LEE LAR K HHM A IEAVHSNASRDKIKLQTE LEE 517
Cdd:TIGR02168 384 LRSK V AQ LE LQIASL - NNEI E RL E AR L ER L ED R R E RLQQE - I E ELL K K LEE AEL K ELQ A ELEELEEELEELQEELER LEE 461
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 518 QYKKEKLS LEE DKNQ L QLELES L K Q a L GDK L T S ANQEIGR L QDL ------ VR K SEQ GL GSAE G LI S S L QDSQ E RLQSELD 591
Cdd:TIGR02168 462 ALEELREE LEE AEQA L DAAERE L A Q - L QAR L D S LERLQEN L EGF segvka LL K NQS GL SGIL G VL S E L ISVD E GYEAAIE 540
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 592 LTK G RL ------ KETKD A LLNVEAEL Q Q E RHEHEQTLATMKEEEKLRVDRMAHDLE I KWTENLRQECS K LRQE LR LQHE - 664
Cdd:TIGR02168 541 AAL G GR lqavvv ENLNA A KKAIAFLK Q N E LGRVTFLPLDSIKGTEIQGNDREILKN I EGFLGVAKDLV K FDPK LR KALS y 620
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 665 -------- E D KKS A MSQLLQ L KEREKNAAR D SWQKKVEDLLNQRHSLGEA -- L HKS i NN I SL L KQNL E LQLCQSQTSLQQ 734
Cdd:TIGR02168 621 llggvlvv D D LDN A LELAKK L RPGYRIVTL D GDLVRPGGVITGGSAKTNS si L ERR - RE I EE L EEKI E ELEEKIAELEKA 699
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 735 L QAQFTQERQRLTQELEELE E QHQQRHKSLKEAHV LA FQTM E E E KEK E QR A LETHLQQKHS AE LQS L KDA h R E SM E GFRV 814
Cdd:TIGR02168 700 L AELRKELEELEEELEQLRK E LEELSRQISALRKD LA RLEA E V E QLE E RI A QLSKELTELE AE IEE L EER - L E EA E EELA 778
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 815 E M E Q E LQT L RFEL E d EG K AM L AS LR SE L NHQH A A sidllrhsh HQE L AAAKME L ERSIDISR R QSKEHMC R IS DL Q E ELR 894
Cdd:TIGR02168 779 E A E A E IEE L EAQI E - QL K EE L KA LR EA L DELR A E --------- LTL L NEEAAN L RERLESLE R RIAATER R LE DL E E QIE 848
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 895 HREHH I TD L DK E VQH L H E N I NT L TK ELE LKGK E ilrv R SESNQQMR L HEQD L ---- NKRL E K E LDVMTADH - L R E KNIMR 969
Cdd:TIGR02168 849 ELSED I ES L AA E IEE L E E L I EE L ES ELE ALLN E ---- R ASLEEALA L LRSE L eels EELR E L E SKRSELRR e L E E LREKL 924
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 568965745 970 A DFN -------- KTNE L LKEINAALQVS LE DM E EKYLMR E SRP E DIQ - MIAE L KSL I T E 1019
Cdd:TIGR02168 925 A QLE lrleglev RIDN L QERLSEEYSLT LE EA E ALENKI E DDE E EAR r RLKR L ENK I K E 983
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
245-793
3.50e-10
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 64.19
E-value: 3.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 245 KQ L I EE YEGKLSKAQVFYE REL DNLKRSQLFTA E S L Q A SRDKEADLRK E FQGQEAI LR KTIGK L KT EL QMV Q D E ASS LL D 324
Cdd:COG1196 216 RE L K EE LKELEAELLLLKL REL EAELEELEAEL E E L E A ELEELEAELA E LEAELEE LR LELEE L EL EL EEA Q A E EYE LL A 295
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 325 KCQK L QMAL A TA E NNVQV L QKQ L DDAK E GEMA L LSKHK E V E S EL AAAR E R L Q E QASD L VLKASHIGMLQATQMTQ E VTIK 404
Cdd:COG1196 296 ELAR L EQDI A RL E ERRRE L EER L EELE E ELAE L EEELE E L E E EL EELE E E L E E AEEE L EEAEAELAEAEEALLEA E AELA 375
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 405 DL E S E KSRAN E R L CQLEEER A F L QSRTQS L D E EQKQQVLE LE KKVN E AKRTQQEYY E M E LKNLQNRLEG E V A QLN EA HGK 484
Cdd:COG1196 376 EA E E E LEELA E E L LEALRAA A E L AAQLEE L E E AEEALLER LE RLEE E LEELEEALA E L E EEEEEEEEAL E E A AEE EA ELE 455
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 485 TL EE LARKHHMAIEAVHSNASRDKIK L QT EL E E QYKKEK L S LE EDKNQLQLELESLKQA L GDK L TSANQEIGR L QDLVRK 564
Cdd:COG1196 456 EE EE ALLELLAELLEEAALLEAALAE L LE EL A E AAARLL L L LE AEADYEGFLEGVKAAL L LAG L RGLAGAVAV L IGVEAA 535
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 565 S E QG L GS A EG ------ LISSLQDSQERLQSELDLTK GR ----- L KETKDALLNVE A ELQQERHEHEQTL A TMKE E EKL R V 633
Cdd:COG1196 536 Y E AA L EA A LA aalqni VVEDDEVAAAAIEYLKAAKA GR atflp L DKIRARAALAA A LARGAIGAAVDLV A SDLR E ADA R Y 615
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 634 DRMAHD L EIKWTENL R Q E CSKL R QELRLQHEEDKKSAMSQLLQLKEREKNAA R DSWQKKV E DLLNQRHSLGEALHKSINN 713
Cdd:COG1196 616 YVLGDT L LGRTLVAA R L E AALR R AVTLAGRLREVTLEGEGGSAGGSLTGGSR R ELLAALL E AEAELEELAERLAEEELEL 695
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 714 ISL L KQNL E LQLCQSQTSLQQ L QAQFTQ E RQRLTQ E L E EL E EQHQQRHKSLKEAHVLAFQTM E EEKEK E QRALETH L QQK 793
Cdd:COG1196 696 EEA L LAEE E EERELAEAEEER L EEELEE E ALEEQL E A E RE E LLEELLEEEELLEEEALEELP E PPDLE E LERELER L ERE 775
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
30-599
1.06e-09
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 62.65
E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 30 A Q L AGHNMDYSQDMHLKMSKKIAQ L TKVIYA L NTRND E HD A AIQA L KDAH EE EIQQI laetrekilly KSKVT EE LD L RR 109
Cdd:COG1196 227 A E L LLLKLRELEAELEELEAELEE L EAELEE L EAELA E LE A ELEE L RLEL EE LELEL ----------- EEAQA EE YE L LA 295
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 110 KIQV LE ASLEDHMKMKQ E ALTEF E AYKRRVEDMQL c AEAQHVQRIVTMSR E V EE IRKKF EE RLRSFGQLQVQFENDKQAA 189
Cdd:COG1196 296 ELAR LE QDIARLEERRR E LEERL E ELEEELAELEE - ELEELEEELEELEE E L EE AEEEL EE AEAELAEAEEALLEAEAEL 374
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 190 L E DLRTTHR L EVQE L - LKSQQNHSSSVKLGQ E K AE GLHRMEV E A L NNTVK EL RLEKKQ L I EE Y E g KLSK A QVFYER E LDN 268
Cdd:COG1196 375 A E AEEELEE L AEEL L e ALRAAAELAAQLEEL E E AE EALLERL E R L EEELE EL EEALAE L E EE E E - EEEE A LEEAAE E EAE 453
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 269 L KRSQLFTA E S L QASRDKE A D L RKEFQGQEAI L RKTIGK L KTE L QMVQ D EASS L LDK cq K LQMA LA TAENNVQVLQKQLD 348
Cdd:COG1196 454 L EEEEEALL E L L AELLEEA A L L EAALAELLEE L AEAAAR L LLL L EAEA D YEGF L EGV -- K AALL LA GLRGLAGAVAVLIG 531
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 349 DAKEG E M AL lskhke VESEL AA ARERLQ E QASDLVLKASHIGMLQ A TQM T QEVTI K DLESEKSR A NERLCQLEEERAFLQ 428
Cdd:COG1196 532 VEAAY E A AL ------ EAALA AA LQNIVV E DDEVAAAAIEYLKAAK A GRA T FLPLD K IRARAALA A ALARGAIGAAVDLVA 605
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 429 S RTQSL D EEQKQQVLE L EKKVNE A K R TQQEYYEMELKNLQN R LEGEVAQLNE A H G KTLEELA R KHHM A IEAVHSNASRDK 508
Cdd:COG1196 606 S DLREA D ARYYVLGDT L LGRTLV A A R LEAALRRAVTLAGRL R EVTLEGEGGS A G G SLTGGSR R ELLA A LLEAEAELEELA 685
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 509 IK L QT E LE E QYKKEKLSL EE DK -- NQLQL E LESLKQALGDKLTSANQ E IGR L QDLVRKS E QG L GSAEGLISSLQDSQ E R L 586
Cdd:COG1196 686 ER L AE E EL E LEEALLAEE EE ER el AEAEE E RLEEELEEEALEEQLEA E REE L LEELLEE E EL L EEEALEELPEPPDL E E L 765
570
....*....|...
gi 568965745 587 QS EL DLTKGRLKE 599
Cdd:COG1196 766 ER EL ERLEREIEA 778
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
82-920
1.55e-08
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 58.91
E-value: 1.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 82 EIQQILA E TR E KILLY K SKVT E ELD L RRKI Q V LE AS LE DHMKMKQ E ALT E F E AYKRRVED mqlcaeaq HVQR I VTMSREV 161
Cdd:TIGR02168 233 RLEELRE E LE E LQEEL K EAEE E LEE L TAEL Q E LE EK LE ELRLEVS E LEE E I E ELQKELYA -------- LANE I SRLEQQK 304
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 162 EEI R KKFEERL R SFGQ L QV Q F E NDKQAAL E DLRTTHR LE VQ -------- E L L KSQQNHSSSVKLGQ E KAEGLHRMEV E A L 233
Cdd:TIGR02168 305 QIL R ERLANLE R QLEE L EA Q L E ELESKLD E LAEELAE LE EK leelkeel E S L EAELEELEAELEEL E SRLEELEEQL E T L 384
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 234 NNT V KE L R L EKKQ L --- IE EY E GK L SKAQ vfyereldnl K R SQLFTA E SLQASRDK E ADLR KE F Q GQEAI L RKTIGK L KT 310
Cdd:TIGR02168 385 RSK V AQ L E L QIAS L nne IE RL E AR L ERLE ---------- D R RERLQQ E IEELLKKL E EAEL KE L Q AELEE L EEELEE L QE 454
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 311 EL QMVQDEASS L LDKCQKLQM AL AT AE NNVQV LQ KQ LD DAKEGEMA L LSKHKE V ESE L AAARERLQ -------------- 376
Cdd:TIGR02168 455 EL ERLEEALEE L REELEEAEQ AL DA AE RELAQ LQ AR LD SLERLQEN L EGFSEG V KAL L KNQSGLSG ilgvlselisvdeg 534
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 377 - E Q A SDLV L KAS higm LQA TQM - TQEVTI K DLESE K SRANE R LCQ L EEERA flqs RTQSLDEEQKQQVLEL E KKVNE AK R 454
Cdd:TIGR02168 535 y E A A IEAA L GGR ---- LQA VVV e NLNAAK K AIAFL K QNELG R VTF L PLDSI ---- KGTEIQGNDREILKNI E GFLGV AK D 606
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 455 T qq EYYEME L KNLQNR L E G E V AQLNE ah GKTLE ELA R K -- HHMA I ----- EA V HSNASRDKIKLQ T ELEEQYKKEKLS - L 526
Cdd:TIGR02168 607 L -- VKFDPK L RKALSY L L G G V LVVDD -- LDNAL ELA K K lr PGYR I vtldg DL V RPGGVITGGSAK T NSSILERRREIE e L 682
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 527 EE DKNQ L QLELES L KQ AL GD --- K L TSANQ E IGR L QDLVRKSEQGLGSAEGLISS L QDSQ E R L QSELDLTKGR L K E TKDA 603
Cdd:TIGR02168 683 EE KIEE L EEKIAE L EK AL AE lrk E L EELEE E LEQ L RKELEELSRQISALRKDLAR L EAEV E Q L EERIAQLSKE L T E LEAE 762
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 604 LLNV E AE L QQERH E HEQTL A TMK E E E K l RVDRMAHD L eikwt EN LR QECSK LR Q EL R L QH EE dkksamsq LLQ L K ER EKN 683
Cdd:TIGR02168 763 IEEL E ER L EEAEE E LAEAE A EIE E L E A - QIEQLKEE L ----- KA LR EALDE LR A EL T L LN EE -------- AAN L R ER LES 828
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 684 AA R D -- SWQKKV EDL LN Q RHS L G E ALHKSINN I SL L KQNL E lqlcqsqtslqqlqa QFTQ E RQR L TQ E LEE LEE QHQQRH 761
Cdd:TIGR02168 829 LE R R ia ATERRL EDL EE Q IEE L S E DIESLAAE I EE L EELI E --------------- ELES E LEA L LN E RAS LEE ALALLR 893
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 762 KS L K E A hvlaf QTMEE E K E KEQRA L ETH L Q qkhsa EL QSLKDAHRESM EG FR V EMEQELQT L RF E LEDEGKAML A slrse 841
Cdd:TIGR02168 894 SE L E E L ----- SEELR E L E SKRSE L RRE L E ----- EL REKLAQLELRL EG LE V RIDNLQER L SE E YSLTLEEAE A ----- 958
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568965745 842 lnhq HAAS I DLLRHSHHQE L AAAKMELERSIDISRRQSK E hmcr ISD L Q E ELRHREHHIT DL DKEVQH L H E N I NTLTK E 920
Cdd:TIGR02168 959 ---- LENK I EDDEEEARRR L KRLENKIKELGPVNLAAIE E ---- YEE L K E RYDFLTAQKE DL TEAKET L E E A I EEIDR E 1029
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
228-921
3.63e-08
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 57.76
E-value: 3.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 228 MEV E A L NNTVK EL RL E K K QLI EE Y E g K L SKAQVFY E RE L DN L k R SQLFTA E SLQASRD KE ---- A DLRKEFQG Q EA ILR K 303
Cdd:TIGR02168 232 LRL E E L REELE EL QE E L K EAE EE L E - E L TAELQEL E EK L EE L - R LEVSEL E EEIEELQ KE lyal A NEISRLEQ Q KQ ILR E 309
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 304 TIGK L KTE L QMVQDEASS L LD K CQK L QMA LA TA E NNVQV L QKQ L DDAKEGEMA L LSKHK E V ES E L AAAR E R L QEQA S DLV 383
Cdd:TIGR02168 310 RLAN L ERQ L EELEAQLEE L ES K LDE L AEE LA EL E EKLEE L KEE L ESLEAELEE L EAELE E L ES R L EELE E Q L ETLR S KVA 389
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 384 LKASH I GM L QATQMTQ E VTIKD LE SEKS R ANERLCQ L EEERAFLQSRTQSLDE E QKQQV LE LEKKVN E AKRTQQ E YYEM E 463
Cdd:TIGR02168 390 QLELQ I AS L NNEIERL E ARLER LE DRRE R LQQEIEE L LKKLEEAELKELQAEL E ELEEE LE ELQEEL E RLEEAL E ELRE E 469
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 464 L KNLQNR L EGEVAQ L NEAHGK ----- T L E E LARKHHMAIE A VHS N A S RDKIK L QT ----- ELE E Q Y KKEKLS -------- 525
Cdd:TIGR02168 470 L EEAEQA L DAAERE L AQLQAR ldsle R L Q E NLEGFSEGVK A LLK N Q S GLSGI L GV lseli SVD E G Y EAAIEA alggrlqa 549
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 526 - LE E DK N QLQLELES LKQ ALGDKL T ------- SANQEI G RLQDLVRKS E QG LG S A EG L ISSLQDSQER L QSE L DLTK --- 594
Cdd:TIGR02168 550 v VV E NL N AAKKAIAF LKQ NELGRV T flpldsi KGTEIQ G NDREILKNI E GF LG V A KD L VKFDPKLRKA L SYL L GGVL vvd 629
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 595 ------ GRL K ETKDALLN V EA ----------------------- E LQQ E RH E H E QTLATMK E EEKLRVDRM A h D L EIK w T 645
Cdd:TIGR02168 630 dldnal ELA K KLRPGYRI V TL dgdlvrpggvitggsaktnssil E RRR E IE E L E EKIEELE E KIAELEKAL A - E L RKE - L 707
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 646 E N L RQ E CSK LR Q EL R l QHEEDKKSAMSQ L LQ L KEREKNAA -- RDSWQ K KVED L LNQRHS L G E A L HKSINNISLLKQNL E L 723
Cdd:TIGR02168 708 E E L EE E LEQ LR K EL E - ELSRQISALRKD L AR L EAEVEQLE er IAQLS K ELTE L EAEIEE L E E R L EEAEEELAEAEAEI E E 786
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 724 Q lcqsqtsl QQLQA Q FTQ E RQR L TQE L E EL E eqhq QRHKS L K E ahvl AFQTME E EK E KEQ R al ETHLQQKHSAE L QSLKD 803
Cdd:TIGR02168 787 L -------- EAQIE Q LKE E LKA L REA L D EL R ---- AELTL L N E ---- EAANLR E RL E SLE R -- RIAATERRLED L EEQIE 848
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 804 AHR E SM E GFRV E M E q EL QT L RF ELE D E GK A M L A slrselnhqhaasidl L R H S HHQE LA AAKM ELE rsid ISRRQSK E HM 883
Cdd:TIGR02168 849 ELS E DI E SLAA E I E - EL EE L IE ELE S E LE A L L N ---------------- E R A S LEEA LA LLRS ELE ---- ELSEELR E LE 907
730 740 750
....*....|....*....|....*....|....*...
gi 568965745 884 CRI S D L QE EL RHREHHITD L DKEVQH L HEN I NT L TKE L 921
Cdd:TIGR02168 908 SKR S E L RR EL EELREKLAQ L ELRLEG L EVR I DN L QER L 945
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
49-688
2.52e-07
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 55.07
E-value: 2.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 49 KKI A Q L TKVIYA L NTRND E HDAAIQALKDAH EE EIQQ I LAETR E KI L LY K S K V ---- T E ELD L R R K I QVL E AS LED HMKM 124
Cdd:TIGR02169 244 RQL A S L EEELEK L TEEIS E LEKRLEEIEQLL EE LNKK I KDLGE E EQ L RV K E K I gele A E IAS L E R S I AEK E RE LED AEER 323
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 125 KQEALT E FEAYKRRV E DMQLCA E AQHVQ R IVTMSR ------------- E V EE IR K K F E E RLRSFGQLQVQF E ND K QAAL E 191
Cdd:TIGR02169 324 LAKLEA E IDKLLAEI E ELEREI E EERKR R DKLTEE yaelkeeledlra E L EE VD K E F A E TRDELKDYREKL E KL K REIN E 403
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 192 DL R TTH RL -- E V Q E L LKSQQNHSSSVK - LGQEKA E GLHRM E VE AL NNTVK E LR LE --------------- K K QLIEEY E G 253
Cdd:TIGR02169 404 LK R ELD RL qe E L Q R L SEELADLNAAIA g IEAKIN E LEEEK E DK AL EIKKQ E WK LE qlaadlskyeqelyd L K EEYDRV E K 483
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 254 K LSK A Q vfye REL DNLKRSQLFTA E SLQAS R DK E AD L RKEF QG QEAILRK t I G KLKTELQ -------------- M V Q D E A 319
Cdd:TIGR02169 484 E LSK L Q ---- REL AEAEAQARASE E RVRGG R AV E EV L KASI QG VHGTVAQ - L G SVGERYA taievaagnrlnnv V V E D D A 558
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 320 SSL ---- L D K CQ K LQM A LATAE N NVQVLQKQ L ------------------ D DAK E GEMALLSKHKE V ESELA AAR E ---- 373
Cdd:TIGR02169 559 VAK eaie L L K RR K AGR A TFLPL N KMRDERRD L silsedgvigfavdlvef D PKY E PAFKYVFGDTL V VEDIE AAR R lmgk 638
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 374 - R LQEQASD L VL K ASHIGMLQATQMTQEVTIKDLES E KS R AN ERL CQ L EE E RAF LQS RT qsld EEQKQQVL EL EKKVNE A 452
Cdd:TIGR02169 639 y R MVTLEGE L FE K SGAMTGGSRAPRGGILFSRSEPA E LQ R LR ERL EG L KR E LSS LQS EL ---- RRIENRLD EL SQELSD A 714
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 453 K R TQQ eyyem E LKNLQNR LE G E VAQ L N E ahgk T LEEL ARK hhmaieav H S NASRDKIKLQT EL E E q YKKEKLS LEED KNQ 532
Cdd:TIGR02169 715 S R KIG ----- E IEKEIEQ LE Q E EEK L K E ---- R LEEL EED -------- L S SLEQEIENVKS EL K E - LEARIEE LEED LHK 776
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 533 L QLE L ES L KQA L G -------- DK L TSANQ E IG R LQDLV R KS EQ G L GSAEGLISS L QDSQER LQ SELDLT K GRL K ETKDAL 604
Cdd:TIGR02169 777 L EEA L ND L EAR L S hsripeiq AE L SKLEE E VS R IEARL R EI EQ K L NRLTLEKEY L EKEIQE LQ EQRIDL K EQI K SIEKEI 856
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 605 L N VEA --- EL QQ E RH E H E QT L ATMKEE - EK L RVD R MAHDLEIKWT E NLRQ E CSKLRQEL R LQHE E D K KSAMSQLLQ L K E R 680
Cdd:TIGR02169 857 E N LNG kke EL EE E LE E L E AA L RDLESR l GD L KKE R DELEAQLREL E RKIE E LEAQIEKK R KRLS E L K AKLEALEEE L S E I 936
....*...
gi 568965745 681 E KNAAR D S 688
Cdd:TIGR02169 937 E DPKGE D E 944
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
107-451
2.08e-06
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 51.99
E-value: 2.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 107 L RRKIQVLEASLEDHM K MKQEALT E F E AY K R R V E DMQ lcaeaqhv QRIVTMSR E V E EIRKKFE E RLRSFGQ L QVQFEN d K 186
Cdd:TIGR02169 707 L SQELSDASRKIGEIE K EIEQLEQ E E E KL K E R L E ELE -------- EDLSSLEQ E I E NVKSELK E LEARIEE L EEDLHK - L 777
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 187 QA AL E DL rtt HRLEVQELLKSQ Q NHS S SV klgqeka E GLHRMEVEA L NNT vk E LR L EKKQ L IE EY EG K LSKAQVFYERE L 266
Cdd:TIGR02169 778 EE AL N DL --- EARLSHSRIPEI Q AEL S KL ------- E EEVSRIEAR L REI -- E QK L NRLT L EK EY LE K EIQELQEQRID L 845
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 267 DNLKR S QLFTA E S L QASRDKEADLRK E FQGQEAI L RKTI G K LK T E LQMVQDEASS L LD K CQK L QMALATAENNVQV L QKQ 346
Cdd:TIGR02169 846 KEQIK S IEKEI E N L NGKKEELEEELE E LEAALRD L ESRL G D LK K E RDELEAQLRE L ER K IEE L EAQIEKKRKRLSE L KAK 925
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 347 L D dakegem AL LSKHK E V E SELAAAR E RLQ E QA S DLVLK A SHIGMLQATQMTQE V T --- I KDL E SEKS R AN E --- RLCQ L 420
Cdd:TIGR02169 926 L E ------- AL EEELS E I E DPKGEDE E IPE E EL S LEDVQ A ELQRVEEEIRALEP V N mla I QEY E EVLK R LD E lke KRAK L 998
330 340 350
....*....|....*....|....*....|.
gi 568965745 421 EEER AFLQS R TQSLDEEQKQQVL E LEKKV NE 451
Cdd:TIGR02169 999 EEER KAILE R IEEYEKKKREVFM E AFEAI NE 1029
GumC
COG3206 Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
245-481
3.61e-06
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain]
Cd Length: 687
Bit Score: 51.17
E-value: 3.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 245 K Q LI E EYEGKLS KA QV F Y E RE L DN L K rsqlfta ES L QASRDKEADL R KE ----- FQGQEAI L RKTIGK L KTE L QMVQD E A 319
Cdd:COG3206 163 E Q NL E LRREEAR KA LE F L E EQ L PE L R ------- KE L EEAEAALEEF R QK nglvd LSEEAKL L LQQLSE L ESQ L AEARA E L 235
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 320 SSLLDKCQK L QMA L ATAENNVQV L Q kqldd AKEGEMA L LSKHK E V E S ELA AARE R LQEQAS D LV lkashigmlqat QMTQ 399
Cdd:COG3206 236 AEAEARLAA L RAQ L GSGPDALPE L L ----- QSPVIQQ L RAQLA E L E A ELA ELSA R YTPNHP D VI ------------ ALRA 298
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 400 E vt I KD L ESE - KSR A NER L CQ LE E E RAF LQ S R TQ SL deeq KQ Q VLE LE KKVN E AKRTQQ E YYEM -- E LKNLQNRL E GEVA 476
Cdd:COG3206 299 Q -- I AA L RAQ l QQE A QRI L AS LE A E LEA LQ A R EA SL ---- QA Q LAQ LE ARLA E LPELEA E LRRL er E VEVARELY E SLLQ 372
....*
gi 568965745 477 Q L N EA 481
Cdd:COG3206 373 R L E EA 377
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
415-630
9.14e-06
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 49.91
E-value: 9.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 415 E RL CQL --- EE E R A F - L QSR TQS ------ LD EEQKQQV LE l E KKVN EA KRTQQ E YYE m E L KNLQNR LE --------- GEV 475
Cdd:COG4913 180 A RL RRR lgi GS E K A L r L LHK TQS fkpigd LD DFVREYM LE - E PDTF EA ADALV E HFD - D L ERAHEA LE dareqiell EPI 257
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 476 AQ L N E AHGKTL E E LA RKHHMAIEAVHSN A S R DKIK L QT ELEE ------ QYKK E KLS LE EDKNQ L QL EL ES L KQAL ---- G 545
Cdd:COG4913 258 RE L A E RYAAAR E R LA ELEYLRAALRLWF A Q R RLEL L EA ELEE lraela RLEA E LER LE ARLDA L RE EL DE L EAQI rgng G 337
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 546 D K L TSANQ EI G RL QDLVRKS E QGLGSA E G L ISS L QDSQERLQS E LDLTKGRLKETKD AL LNVEAE L QQERH E H E QT L ATM 625
Cdd:COG4913 338 D R L EQLER EI E RL ERELEER E RRRARL E A L LAA L GLPLPASAE E FAALRAEAAALLE AL EEELEA L EEALA E A E AA L RDL 417
....*
gi 568965745 626 KE E EK 630
Cdd:COG4913 418 RR E LR 422
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
410-794
2.39e-05
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 48.51
E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 410 K S R AN E RLCQ LE EE R AF L Q s R TQSLDE E QKQ Q VLE LE KKVNE A K R TQQ ey YEM EL KN L QNR L E ge V AQ L N E AHGK t LEEL 489
Cdd:TIGR02168 171 K E R RK E TERK LE RT R EN L D - R LEDILN E LER Q LKS LE RQAEK A E R YKE -- LKA EL RE L ELA L L -- V LR L E E LREE - LEEL 244
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 490 ARKHHM A I E AVHS n ASRDKIK L QTE LEE q YKK E KLS LEE DKNQ LQ L EL ES L kqalgdkltsa NQ EI G RL - Q DLVRKS E Q g 568
Cdd:TIGR02168 245 QEELKE A E E ELEE - LTAELQE L EEK LEE - LRL E VSE LEE EIEE LQ K EL YA L ----------- AN EI S RL e Q QKQILR E R - 310
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 569 lgsaegl ISS L QDSQ E R L QSE L DLTKGR L K E TKDA L LNV E AE L QQERH E H E QTL A TMK E E E KLR vd RMAHDLEIKWT E N L 648
Cdd:TIGR02168 311 ------- LAN L ERQL E E L EAQ L EELESK L D E LAEE L AEL E EK L EELKE E L E SLE A ELE E L E AEL -- EELESRLEELE E Q L 381
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 649 RQEC SK LR qelrl Q H E EDKK S AMSQLLQ L KE R EK -- NAA R DSW Q KKV E D LL NQRHSL ge A L HKSINNISL L KQN LE lqlc 726
Cdd:TIGR02168 382 ETLR SK VA ----- Q L E LQIA S LNNEIER L EA R LE rl EDR R ERL Q QEI E E LL KKLEEA -- E L KELQAELEE L EEE LE ---- 450
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568965745 727 QS Q TS L QQ L QAQFTQE R QR L TQELEE L EEQHQQRHKSLKEAHV L af QTME E EK E KEQRALETH L QQKH 794
Cdd:TIGR02168 451 EL Q EE L ER L EEALEEL R EE L EEAEQA L DAAERELAQLQARLDS L -- ERLQ E NL E GFSEGVKAL L KNQS 516
SMC_N
pfam02463 RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
183-1029
2.93e-05
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain]
Cd Length: 1161
Bit Score: 48.43
E-value: 2.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 183 E NDKQ A A L EDLRTTHR L EVQE L LKSQQNHSSSVK L GQEKAEGLHRMEVEALNNTVK E LRLEKKQ L IEEYEGKLSKAQVFY 262
Cdd:pfam02463 181 E TENL A E L IIDLEELK L QELK L KEQAKKALEYYQ L KEKLELEEEYLLYLDYLKLNE E RIDLLQE L LRDEQEEIESSKQEI 260
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 263 E R E LDN L KRSQLFTA E SLQASRDK E a DLR K EFQGQ E AI L RKTIG KL KTELQMVQDEASSLLDKCQ K LQMA L ATAENNVQV 342
Cdd:pfam02463 261 E K E EEK L AQVLKENK E EEKEKKLQ E - EEL K LLAKE E EE L KSELL KL ERRKVDDEEKLKESEKEKK K AEKE L KKEKEEIEE 339
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 343 L Q K Q L DDAKEGEM A LLSKHK E V E SELAAARERLQ E QASDLV L KASHIGMLQATQMTQEVTIKDL E S E KSRAN E RLC QLE E 422
Cdd:pfam02463 340 L E K E L KELEIKRE A EEEEEE E L E KLQEKLEQLEE E LLAKKK L ESERLSSAAKLKEEELELKSEE E K E AQLLL E LAR QLE D 419
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 423 ERAFLQSRTQSLD EE QKQQVLELEK K VN E A K RTQQEYYEME LK NLQNRLEG E VAQLNE ahgktleelarkh HMAIEAVHS 502
Cdd:pfam02463 420 LLKEEKKEELEIL EE EEESIELKQG K LT E E K EELEKQELKL LK DELELKKS E DLLKET ------------- QLVKLQEQL 486
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 503 NASRDKI KL QTELEEQY K KEKLSLEEDKNQLQLELESLKQ A L G DKLTSANQEIGRLQDLVR k SEQGLG SA EGLISSLQDS 582
Cdd:pfam02463 487 ELLLSRQ KL EERSQKES K ARSGLKVLLALIKDGVGGRIIS A H G RLGDLGVAVENYKVAIST - AVIVEV SA TADEVEERQK 565
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 583 QE R LQS EL D L TKGR L KETKDA L LNVEAELQQERHEHEQT LA TMKEEEKLRVDRMAHDLEIKWTENLRQECSKLRQELRLQ 662
Cdd:pfam02463 566 LV R ALT EL P L GARK L RLLIPK L KLPLKSIAVLEIDPILN LA QLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKE 645
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 663 HEED K KSAMSQL L QL K ERE K NAARDSWQKKV E DLLN Q RHSLG E ALHKS I NNIS L LKQNL E LQLCQSQTS L QQLQAQFTQE 742
Cdd:pfam02463 646 SGLR K GVSLEEG L AE K SEV K ASLSELTKELL E IQEL Q EKAES E LAKEE I LRRQ L EIKKK E QREKEELKK L KLEAEELLAD 725
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 743 R QRLT Q ELEEL E EQHQQRHKSLK E AHVLAFQTME EEKE K E QRA L ETHLQQKHSAELQSL K DAHR E SM E GFRVEM E Q EL QT 822
Cdd:pfam02463 726 R VQEA Q DKINE E LKLLKQKIDEE E EEEEKSRLKK EEKE E E KSE L SLKEKELAEEREKTE K LKVE E EK E EKLKAQ E E EL RA 805
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 823 L RF EL ED E GKAMLASLRSELNHQHA as IDLLRHSHHQ EL AAAKMELERSIDISR R QSK E HMCRISDLQEE L RHR E HHITD 902
Cdd:pfam02463 806 L EE EL KE E AELLEEEQLLIEQEEKI -- KEEELEELAL EL KEEQKLEKLAEEELE R LEE E ITKEELLQELL L KEE E LEEQK 883
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 903 L DK E VQHLH E NINTLT KELE LKGKEILRVRSES N QQM r LHEQDLNKR L E K ELDVMTADH L R E KNIMRADF N KTN E LLKEI 982
Cdd:pfam02463 884 L KD E LESKE E KEKEEK KELE EESQKLNLLEEKE N EIE - ERIKEEAEI L L K YEEEPEELL L E E ADEKEKEE N NKE E EEERN 962
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|.
gi 568965745 983 NAA L QVSL E DMEEKYLMR E SRP E DIQ ---- MIA E LKS L IT E RDQV I KKL IE 1029
Cdd:pfam02463 963 KRL L LAKE E LGKVNLMAI E EFE E KEE rynk DEL E KER L EE E KKKL I RAI IE 1013
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
359-585
3.58e-05
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 47.45
E-value: 3.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 359 SKHK E V E S EL AAARERLQ E QASD L vlkashi GM L QATQMTQEVTIKD LE SEKSRANE R LCQ LE E E R A F L QSRTQS L DE E Q 438
Cdd:COG4942 20 DAAA E A E A EL EQLQQEIA E LEKE L ------- AA L KKEEKALLKQLAA LE RRIAALAR R IRA LE Q E L A A L EAELAE L EK E I 92
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 439 KQQVL ELE KKVN E AKRTQQEY Y EMELKN - L QNR L EG E VAQLNEAHGKT L EE LA RKHHMAI E AV hs N A SRDKIKLQTELE E 517
Cdd:COG4942 93 AELRA ELE AQKE E LAELLRAL Y RLGRQP p L ALL L SP E DFLDAVRRLQY L KY LA PARREQA E EL -- R A DLAELAALRAEL E 170
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568965745 518 QYKK E KLS L EEDKNQLQLE LE S LK QALGDK L TSANQ E IGR L QDLVRKSE Q GLGSA E G LI SS L QDSQER 585
Cdd:COG4942 171 AERA E LEA L LAELEEERAA LE A LK AERQKL L ARLEK E LAE L AAELAELQ Q EAEEL E A LI AR L EAEAAA 238
DUF3584
pfam12128 Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
341-701
5.10e-05
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain]
Cd Length: 1191
Bit Score: 47.53
E-value: 5.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 341 QV L QKQ LD D A K E GEMALLS K HKEV E SE L AA A RER L QEQASDLVLKAS ------- HIGM L QATQMTQEVTI - K D L ESE K SR 412
Cdd:pfam12128 600 EE L RER LD K A E E ALQSARE K QAAA E EQ L VQ A NGE L EKASREETFART alknarl DLRR L FDEKQSEKDKK n K A L AER K DS 679
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 413 ANERL CQ LE EERAF L QSRT Q SLD EEQK Q Q VL E LEKKVNEAKRT qqey Y E ME L KNLQNR L EGEV A QLNEAHGKT L EE L ARK 492
Cdd:pfam12128 680 ANERL NS LE AQLKQ L DKKH Q AWL EEQK E Q KR E ARTEKQAYWQV ---- V E GA L DAQLAL L KAAI A ARRSGAKAE L KA L ETW 755
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 493 HHMAIEAVHSNASRD k I KL QT E LE ------ E QYKKEKLSLEEDKNQL Q LELESLKQA L GDK L TSANQE I GR LQ DLVRKSE 566
Cdd:pfam12128 756 YKRDLASLGVDPDVI - A KL KR E IR tlerki E RIAVRRQEVLRYFDWY Q ETWLQRRPR L ATQ L SNIERA I SE LQ QQLARLI 834
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 567 QGLGSAEGLISSLQDSQ E RL Q SE L D -- L TKG R LKET K D A L L NVE A ELQ Q ERHEHEQT LA TM k E EE KL RV D RMAHDLE i K W 644
Cdd:pfam12128 835 ADTKLRRAKLEMERKAS E KQ Q VR L S en L RGL R CEMS K L A T L KED A NSE Q AQGSIGER LA QL - E DL KL KR D YLSESVK - K Y 912
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568965745 645 T E NLRQECSKLRQELRLQH ----- EED KKSAMSQLLQ L KE R E knaards WQKKV E DLLNQ R H 701
Cdd:pfam12128 913 V E HFKNVIADHSGSGLAET weslr EED HYQNDKGIRL L DY R K ------- LVPYL E QWFDV R V 967
PTZ00121
PTZ00121 MAEBL; Provisional
404-833
7.33e-05
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 47.06
E-value: 7.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 404 K DL E SE K SR A NERLCQL EE ERA fl QSRTQSLDE E QKQQVL E LEKKVN EA KRTQQ E YYEMELKNLQNRL E g E VAQLN EA HG 483
Cdd:PTZ00121 1322 K KA E EA K KK A DAAKKKA EE AKK -- AAEAAKAEA E AAADEA E AAEEKA EA AEKKK E EAKKKADAAKKKA E - E KKKAD EA KK 1398
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 484 K T l EE LAR K HHMAIE A VHSNASR D KI K LQT E LEEQYKKE K LSL EE D K NQLQLELESLKQALGDKLTSANQ E IGRLQDLVR 563
Cdd:PTZ00121 1399 K A - EE DKK K ADELKK A AAAKKKA D EA K KKA E EKKKADEA K KKA EE A K KADEAKKKAEEAKKAEEAKKKAE E AKKADEAKK 1477
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 564 K S E QGLGSA E gliss LQDSQ E RLQSEL D LT K GRLKET K D A LLNVE AE LQQERH E HEQTLATM K EE E KLRVDRMAHDL E I K 643
Cdd:PTZ00121 1478 K A E EAKKAD E ----- AKKKA E EAKKKA D EA K KAAEAK K K A DEAKK AE EAKKAD E AKKAEEAK K AD E AKKAEEKKKAD E L K 1552
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 644 WT E N L RQECS K LRQ E LRLQH EEDK KS A MSQLLQL K ER E KNAARDSWQKKV E DLLNQRHSLGE A LHKS I NNIS L L K QNL E L 723
Cdd:PTZ00121 1553 KA E E L KKAEE K KKA E EAKKA EEDK NM A LRKAEEA K KA E EARIEEVMKLYE E EKKMKAEEAKK A EEAK I KAEE L K K AEE E K 1632
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 724 QLCQSQTSLQQLQAQFTQ E RQRLTQ E LEELEEQHQQRHKSL K EAHVL A FQTM E E EK EKEQRALETHLQQ K HSA EL QSLKD 803
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAE E LKKAEE E NKIKAAEEAKKAEED K KKAEE A KKAE E D EK KAAEALKKEAEEA K KAE EL KKKEA 1712
410 420 430
....*....|....*....|....*....|....
gi 568965745 804 AHRESM E GFRVEM E QEL ---- QTLRFEL ED EG KA 833
Cdd:PTZ00121 1713 EEKKKA E ELKKAE E ENK ikae EAKKEAE ED KK KA 1746
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
274-485
1.13e-04
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 45.91
E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 274 L FT A ESLQ A SR D KE A DLRK E FQG qeai L RKT I GK L KT EL QMVQD E ASS LL DKCQK L QMAL A TAENNVQV L QKQ L DDAKEG 353
Cdd:COG4942 9 L LL A LAAA A QA D AA A EAEA E LEQ ---- L QQE I AE L EK EL AALKK E EKA LL KQLAA L ERRI A ALARRIRA L EQE L AALEAE 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 354 EMA L LSKHK E VES EL A A AR E R L Q E Q --------------------- AS D L V LKASHIGM L QATQMT Q ---- EVTIKD L ES 408
Cdd:COG4942 85 LAE L EKEIA E LRA EL E A QK E E L A E L lralyrlgrqpplalllsped FL D A V RRLQYLKY L APARRE Q aeel RADLAE L AA 164
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568965745 409 EKSRANERLCQ LE EER A F L QSRTQS L DEE -- QK Q QV L ELEK K VNEAKRTQQEYYEM E LKN L QNRLEGEV A QLNE A HGK T 485
Cdd:COG4942 165 LRAELEAERAE LE ALL A E L EEERAA L EAL ka ER Q KL L ARLE K ELAELAAELAELQQ E AEE L EALIARLE A EAAA A AER T 243
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
512-699
2.30e-04
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 44.75
E-value: 2.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 512 Q TELEEQYKK E KLS L EEDKNQ L QL EL ES LK Q --- AL GDK L TSANQE I GR L QDLV R KS EQ G L GSA E GLISS L QDSQER L QS 588
Cdd:COG4942 18 Q ADAAAEAEA E LEQ L QQEIAE L EK EL AA LK K eek AL LKQ L AALERR I AA L ARRI R AL EQ E L AAL E AELAE L EKEIAE L RA 97
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 589 EL DLT K GR L K E TKD A ------------ LL NV E AE L QQE R HEH --- EQTL A TMKEE E K LR V D RMAHDLEIKWT E NL R Q E CS 653
Cdd:COG4942 98 EL EAQ K EE L A E LLR A lyrlgrqpplal LL SP E DF L DAV R RLQ ylk YLAP A RREQA E E LR A D LAELAALRAEL E AE R A E LE 177
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568965745 654 K L RQ EL ----- R L QHEEDKKSAMSQL L QLKER E KN A ARDSW Q KKV E D L LNQ 699
Cdd:COG4942 178 A L LA EL eeera A L EALKAERQKLLAR L EKELA E LA A ELAEL Q QEA E E L EAL 228
DUF5401
pfam17380 Family of unknown function (DUF5401); This is a family of unknown function found in ...
354-566
6.39e-04
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain]
Cd Length: 722
Bit Score: 43.96
E-value: 6.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 354 E M ALLS K HKE V ES EL A AAR E - RLQ E QASDLVLKASHIG M L Q --- ATQMTQEVTIKD LE S E KS R AN ER LCQL E E ER AFLQS 429
Cdd:pfam17380 384 Q M ERQQ K NER V RQ EL E AAR K v KIL E EERQRKIQQQKVE M E Q ira EQEEARQREVRR LE E E RA R EM ER VRLE E Q ER QQQVE 463
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 430 R TQSLD EE Q K QQV LELEK K vnea KR TQQEYY E MEL K N L QNR LE gevaqlneahgktleel A RK HH M AI E avhsna S R DKI 509
Cdd:pfam17380 464 R LRQQE EE R K RKK LELEK E ---- KR DRKRAE E QRR K I L EKE LE ----------------- E RK QA M IE E ------ E R KRK 516
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568965745 510 K L QT E L EE Q ---- Y KK E KLSLE E DKNQL Q L E L E SLKQ a LGDKLTS A NQ E IG RL QDLV R KS E 566
Cdd:pfam17380 517 L L EK E M EE R qkai Y EE E RRREA E EERRK Q Q E M E ERRR - IQEQMRK A TE E RS RL EAME R ER E 576
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
640-960
6.43e-04
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 43.77
E-value: 6.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 640 L E I K WTENLRQECSK L RQELR L QH E EDKKS A MSQL L QLKER E KN A ARDSWQKKV E D L LNQRHS L GEA L HKSINNISL L KQ 719
Cdd:COG1196 216 R E L K EELKELEAELL L LKLRE L EA E LEELE A ELEE L EAELE E LE A ELAELEAEL E E L RLELEE L ELE L EEAQAEEYE L LA 295
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 720 N L E lqlc QSQTSLQQ L QAQFTQERQ RL TQEL EEL E E QHQQRHKSLK E AHV L AFQTM E E E K E K E QRAL E THLQQKHSA E LQ 799
Cdd:COG1196 296 E L A ---- RLEQDIAR L EERRRELEE RL EELE EEL A E LEEELEELEE E LEE L EEELE E A E E E L E EAEA E LAEAEEALL E AE 371
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 800 SLKDAHR E SM E GFRV E MEQE L QTLRFELEDEGKAML A SLRSELNHQHAASIDLLRHSHHQ EL AAAKM E L E RSIDISRRQS 879
Cdd:COG1196 372 AELAEAE E EL E ELAE E LLEA L RAAAELAAQLEELEE A EEALLERLERLEEELEELEEALA EL EEEEE E E E EALEEAAEEE 451
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 880 K E HMCRISD L Q E E L RHREHHITD L DKEVQH L H E NINTLTKE L E L KGKEILRVRSESNQQMRLHEQDLNKR L EKELD V MTA 959
Cdd:COG1196 452 A E LEEEEEA L L E L L AELLEEAAL L EAALAE L L E ELAEAAAR L L L LLEAEADYEGFLEGVKAALLLAGLRG L AGAVA V LIG 531
.
gi 568965745 960 D 960
Cdd:COG1196 532 V 532
sbcc
TIGR00618 exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
314-952
8.74e-04
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain]
Cd Length: 1042
Bit Score: 43.42
E-value: 8.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 314 M VQDEAS SL LD K CQK L QMALATAENNVQVLQKQLDDA K EGEMAL L SKHK E VESELAAARER L QEQASDLVLKASHIGM L Q 393
Cdd:TIGR00618 184 M EFAKKK SL HG K AEL L TLRSQLLTLCTPCMPDTYHER K QVLEKE L KHLR E ALQQTQQSHAY L TQKREAQEEQLKKQQL L K 263
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 394 a TQMTQEVTIKDL E SEKSRAN ER LCQLEEERAFLQSRTQSLDE EQ KQ Q VLEL E KKVNEAK R TQQEYYEMELKNL Q NRL E G 473
Cdd:TIGR00618 264 - QLRARIEELRAQ E AVLEETQ ER INRARKAAPLAAHIKAVTQI EQ QA Q RIHT E LQSKMRS R AKLLMKRAAHVKQ Q SSI E E 342
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 474 EVAQ L NEA H gktleel ARKH H MAIEAVHSNAS R DKIKL Q TE L EEQYKKEKLSLEEDKNQ LQ L --- EL ES L KQALGDKL T S 550
Cdd:TIGR00618 343 QRRL L QTL H ------- SQEI H IRDAHEVATSI R EISCQ Q HT L TQHIHTLQQQKTTLTQK LQ S lck EL DI L QREQATID T R 415
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 551 ANQEIGRLQD L VRKSE Q GLGSAEGLISSLQDSQERL Q S E ------ L DLTKGR LKE TKDA L LNV E AELQ QE --- RHEHEQT 621
Cdd:TIGR00618 416 TSAFRDLQGQ L AHAKK Q QELQQRYAELCAAAITCTA Q C E klekih L QESAQS LKE REQQ L QTK E QIHL QE trk KAVVLAR 495
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 622 L ATMK EE EKLRVDRMA H DLEIKWTENLRQECSKLR Q ELRLQHEEDKK S AMSQLL QL KERE K NA A RDSW Q KKVED ----- L 696
Cdd:TIGR00618 496 L LELQ EE PCPLCGSCI H PNPARQDIDNPGPLTRRM Q RGEQTYAQLET S EEDVYH QL TSER K QR A SLKE Q MQEIQ qsfsi L 575
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 697 LNQRHSLG E ALHKSI N NISL L KQNL E LQLCQSQTSLQQLQ A QFTQERQRLTQELEE L EE Q HQQRHKS LK EAHVL A F Q TME 776
Cdd:TIGR00618 576 TQCDNRSK E DIPNLQ N ITVR L QDLT E KLSEAEDMLACEQH A LLRKLQPEQDLQDVR L HL Q QCSQELA LK LTALH A L Q LTL 655
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 777 EEKEKEQR AL ETHLQQ K HSAELQS L K ---- DAHR E SMEGFRVEME Q ELQT LR FELEDEGK amlaslrsel NHQHAAS I DL 852
Cdd:TIGR00618 656 TQERVREH AL SIRVLP K ELLASRQ L A lqkm QSEK E QLTYWKEMLA Q CQTL LR ELETHIEE ---------- YDREFNE I EN 725
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 853 LRH S HHQE LAA AKME L ER S IDISRR Q SKEHMCRISDLQEELRHREHHITDLDK E VQ HL HEN I NTLTKEL E LKGKEILRVR 932
Cdd:TIGR00618 726 ASS S LGSD LAA REDA L NQ S LKELMH Q ARTVLKARTEAHFNNNEEVTAALQTGA E LS HL AAE I QFFNRLR E EDTHLLKTLE 805
650 660
....*....|....*....|
gi 568965745 933 S E SN Q QMRLH E QD LN KRL E K 952
Cdd:TIGR00618 806 A E IG Q EIPSD E DI LN LQC E T 825
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
324-567
9.17e-04
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 42.83
E-value: 9.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 324 D KCQKLQMA L ATAENNVQV L Q K Q L DDA K EG E M ALL SKHKEV E SEL AA ARE R LQE qasdlvlkashigm L QATQMTQ E VTI 403
Cdd:COG4942 20 D AAAEAEAE L EQLQQEIAE L E K E L AAL K KE E K ALL KQLAAL E RRI AA LAR R IRA -------------- L EQELAAL E AEL 85
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 404 KD LE S E KSRANER L CQLE EE R A F L QSRTQS L DEEQKQQV L ELEKKVNE A K R TQ Q e Y YEMELKNLQNRL egevaqln E AHG 483
Cdd:COG4942 86 AE LE K E IAELRAE L EAQK EE L A E L LRALYR L GRQPPLAL L LSPEDFLD A V R RL Q - Y LKYLAPARREQA -------- E ELR 156
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 484 KT L E ELA RK hhmai E A VHSNASRDKIK L QT ELEE Q y KKEKLS L EEDKNQ L QLE LE SLKQA L GDK L TSAN QE IGR L QD L VR 563
Cdd:COG4942 157 AD L A ELA AL ----- R A ELEAERAELEA L LA ELEE E - RAALEA L KAERQK L LAR LE KELAE L AAE L AELQ QE AEE L EA L IA 230
....
gi 568965745 564 KS E Q 567
Cdd:COG4942 231 RL E A 234
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
262-895
1.33e-03
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 42.98
E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 262 YERE L DNLKR s Q LFTA E SLQASRDKE A DL R KEFQGQ E AIL -------- RKTIGK L KT EL QMVQD E ASS L LDKCQK L QMA L 333
Cdd:COG4913 240 AHEA L EDARE - Q IELL E PIRELAERY A AA R ERLAEL E YLR aalrlwfa QRRLEL L EA EL EELRA E LAR L EAELER L EAR L 318
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 334 ATAENNVQV L QK Q LDDAKEGEMAL L skhkev E S E LAAARER L Q E QASDL vlk A SHIGM L Q A TQMTQEVTIKDLESEKSR A 413
Cdd:COG4913 319 DALREELDE L EA Q IRGNGGDRLEQ L ------ E R E IERLERE L E E RERRR --- A RLEAL L A A LGLPLPASAEEFAALRAE A 389
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 414 NER L CQ LEEE RAF L QSRTQSLDEEQKQQVL EL EKKVN E AKR tqqeyyeme L KNLQNRLEGEV ---- AQ L N EA H G KTLE EL 489
Cdd:COG4913 390 AAL L EA LEEE LEA L EEALAEAEAALRDLRR EL RELEA E IAS --------- L ERRKSNIPARL lalr DA L A EA L G LDEA EL 460
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 490 ------------ ARKHHM AIE A V - HS ------------------- N ASRDKIK L QT E LEEQYKKEKLSLEE D KNQ L QLE L 537
Cdd:COG4913 461 pfvgelievrpe EERWRG AIE R V l GG faltllvppehyaaalrwv N RLHLRGR L VY E RVRTGLPDPERPRL D PDS L AGK L 540
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 538 ESLKQALGDK L tsa NQ E I GR LQ D L V R - K S EQG L G ------ SAE G LISSLQ ----- D SQE R LQ S ELD L tk G RLKET K D A L L 605
Cdd:COG4913 541 DFKPHPFRAW L --- EA E L GR RF D Y V C v D S PEE L R rhprai TRA G QVKGNG trhek D DRR R IR S RYV L -- G FDNRA K L A A L 615
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 606 NV E - AEL QQ E RH E H E QT L ATMKE E EKLRVD R MAH -------- DL EI KWTE n LRQ E CSK L RQ EL rlqhe E DKKSAMSQ L LQ 676
Cdd:COG4913 616 EA E l AEL EE E LA E A E ER L EALEA E LDALQE R REA lqrlaeys WD EI DVAS - AER E IAE L EA EL ----- E RLDASSDD L AA 689
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 677 L K E R eknaa RDSWQKKV E D L LNQRHS L GEA lhksinn I SL L KQN LE lqlcqsqtslqqlqa Q FTQ E RQR L TQE LE EL E EQ 756
Cdd:COG4913 690 L E E Q ----- LEELEAEL E E L EEELDE L KGE ------- I GR L EKE LE --------------- Q AEE E LDE L QDR LE AA E DL 742
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 757 HQQRHKS L K E AHVL af QTMEEEK E K E Q R ALETHLQQKHS A E L QSLKDAHRES M EG F RV E MEQ E LQT L RFE LE DEGK -- A M 834
Cdd:COG4913 743 ARLELRA L L E ERFA -- AALGDAV E R E L R ENLEERIDALR A R L NRAEEELERA M RA F NR E WPA E TAD L DAD LE SLPE yl A L 820
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568965745 835 L AS L RSELNHQHAASI - D LL RHSHHQEL A AAKME L E R S I DISRR qskehmc RI SD L QEE L RH 895
Cdd:COG4913 821 L DR L EEDGLPEYEERF k E LL NENSIEFV A DLLSK L R R A I REIKE ------- RI DP L NDS L KR 875
PRK11281
PRK11281 mechanosensitive channel MscK;
274-449
1.72e-03
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain]
Cd Length: 1113
Bit Score: 42.59
E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 274 L FTAESLQASRDKEAD L RKEFQGQE A I LR KT --- IGK LK TELQMVQD E AS S L L DKC Q k L QMA LA TAENNV Q VL Q KQ L DDA 350
Cdd:PRK11281 69 L ALLDKIDRQKEETEQ L KQQLAQAP A K LR QA qae LEA LK DDNDEETR E TL S T L SLR Q - L ESR LA QTLDQL Q NA Q ND L AEY 147
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 351 KEGEMA L LSKHKEVESE L A A ARE RLQ E -------- QASDLV L KA S HIGM LQA T Q ------------- MTQEVTIK DL - ES 408
Cdd:PRK11281 148 NSQLVS L QTQPERAQAA L Y A NSQ RLQ Q irnllkgg KVGGKA L RP S QRVL LQA E Q allnaqndlqrks LEGNTQLQ DL l QK 227
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568965745 409 EKSRANE R LCQ LE EERAF LQ S ------ R T Q S ld E EQK Q QVLELEKKV 449
Cdd:PRK11281 228 QRDYLTA R IQR LE HQLQL LQ E ainskr L T L S -- E KTV Q EAQSQDEAA 272
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
232-471
7.03e-03
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 40.13
E-value: 7.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 232 A LNNTVK E LRL E KK QL --- I E E Y E GK L SKAQVFYERE L DN L KRSQLFT A ESLQAS R DK E AD L r KEFQGQE A I L R K T I GK L 308
Cdd:COG4942 17 A QADAAA E AEA E LE QL qqe I A E L E KE L AALKKEEKAL L KQ L AALERRI A ALARRI R AL E QE L - AALEAEL A E L E K E I AE L 95
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 309 KT EL QMVQD E ASS LL DKCQK L Q ----- MA L ATA E NNVQVLQKQ -- L DDAKEGEMALLSKHKEVES ELAA A R ER L QEQASD 381
Cdd:COG4942 96 RA EL EAQKE E LAE LL RALYR L G rqppl AL L LSP E DFLDAVRRL qy L KYLAPARREQAEELRADLA ELAA L R AE L EAERAE 175
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 382 L vlkashigml Q A TQMTQ E VTIKD LE SE K SRANER L CQ LE E E R A F L QSRTQS L DE E QKQQVLELEKKVN EA KRTQQEYYE 461
Cdd:COG4942 176 L ---------- E A LLAEL E EERAA LE AL K AERQKL L AR LE K E L A E L AAELAE L QQ E AEELEALIARLEA EA AAAAERTPA 245
250
....*....|
gi 568965745 462 MELKN L QNR L 471
Cdd:COG4942 246 AGFAA L KGK L 255
PRK03918
PRK03918 DNA double-strand break repair ATPase Rad50;
69-608
8.26e-03
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain]
Cd Length: 880
Bit Score: 40.43
E-value: 8.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 69 DAA I QA L KD -- AHE E E I QQILA E TREKILLYKSKVT E ELDLRRKIQVLEAS LE DHM K MKQ E ALT E F E AYKRRV E DMQLCA 146
Cdd:PRK03918 175 KRR I ER L EK fi KRT E N I EELIK E KEKELEEVLREIN E ISSELPELREELEK LE KEV K ELE E LKE E I E ELEKEL E SLEGSK 254
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 147 EAQH v QR I VTMSREV EE IR K KF EE RLRSFGQ L - QVQFENDKQAA L EDLRTTHRL E VQ E LL K SQQNHSSSVKLGQ E KAE gl 225
Cdd:PRK03918 255 RKLE - EK I RELEERI EE LK K EI EE LEEKVKE L k ELKEKAEEYIK L SEFYEEYLD E LR E IE K RLSRLEEEINGIE E RIK -- 331
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 226 hrm E V E ALNNTVK EL RLEK K Q L IEEY E g K L SKAQVF YE RELDNLKRSQLFTAESLQASRD K EADLRK E FQGQEAILRKT I 305
Cdd:PRK03918 332 --- E L E EKEERLE EL KKKL K E L EKRL E - E L EERHEL YE EAKAKKEELERLKKRLTGLTPE K LEKELE E LEKAKEEIEEE I 407
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 306 G K LKTELQMVQD E ASS L ldkc Q K LQMA L AT A ENNVQ V LQKQ L DDAKEG E M --------- ALLSKH KE V E SELAAA R ER L Q 376
Cdd:PRK03918 408 S K ITARIGELKK E IKE L ---- K K AIEE L KK A KGKCP V CGRE L TEEHRK E L leeytaelk RIEKEL KE I E EKERKL R KE L R 483
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 377 E QASD L VLKASH I GMLQATQMTQ E VTI K ---- D LE s E KSRAN E RLCQ L E E ERAF L QSRTQ SL DE E QK q QVL EL E KK VN E A 452
Cdd:PRK03918 484 E LEKV L KKESEL I KLKELAEQLK E LEE K lkky N LE - E LEKKA E EYEK L K E KLIK L KGEIK SL KK E LE - KLE EL K KK LA E L 561
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 453 KRTQQ E y Y E M EL KN L QNR LE GEVAQLN E AHGKT L E EL ARKHHMAI E AVHS nasrd KIK L QT E LE E Q y KK EKLS L EEDKNQ 532
Cdd:PRK03918 562 EKKLD E - L E E EL AE L LKE LE ELGFESV E ELEER L K EL EPFYNEYL E LKDA ----- EKE L ER E EK E L - KK LEEE L DKAFEE 634
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 533 L QL --- E LE S L KQA L GDKLTSANQ E - IGR L QDLVRKSEQG L GSAEGLISS L QDSQ E RLQSE L DLT K GR L K E TKD A LLNV E 608
Cdd:PRK03918 635 L AE tek R LE E L RKE L EELEKKYSE E e YEE L REEYLELSRE L AGLRAELEE L EKRR E EIKKT L EKL K EE L E E REK A KKEL E 714
SMC_N
pfam02463 RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
48-699
9.28e-03
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain]
Cd Length: 1161
Bit Score: 40.34
E-value: 9.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 48 SKKIAQLTKVIYALNTRNDEHDAAIQA L KDAH EEE IQQI L AETREKILLYKS K VT E ELDLRR K IQVLEASLEDHMKMKQE 127
Cdd:pfam02463 263 EEEKLAQVLKENKEEEKEKKLQEEELK L LAKE EEE LKSE L LKLERRKVDDEE K LK E SEKEKK K AEKELKKEKEEIEELEK 342
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 128 A L T E F E AYKRRV E DMQLCA E AQHVQRIVTMSREVEEIRKKF E ERLRSFGQLQVQF E NDKQAAL E DLRTTHRLEVQ E - LLK 206
Cdd:pfam02463 343 E L K E L E IKREAE E EEEEEL E KLQEKLEQLEEELLAKKKLES E RLSSAAKLKEEEL E LKSEEEK E AQLLLELARQL E d LLK 422
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 207 SQQNHSSSVKLGQ E KAEG L HRMEVEALNNTVKELR L EKKQLIE E YE ------ GKLSKAQVFYER EL DNLKRSQLFTAESL 280
Cdd:pfam02463 423 EEKKEELEILEEE E ESIE L KQGKLTEEKEELEKQE L KLLKDEL E LK ksedll KETQLVKLQEQL EL LLSRQKLEERSQKE 502
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 281 QAS R DKEAD L RKEFQGQEAILRKTIGKLKTE L Q - M V QDEASSLLDKCQKLQM A L A TAENNV Q V L QKQ L DDAKE G EMA L LS 359
Cdd:pfam02463 503 SKA R SGLKV L LALIKDGVGGRIISAHGRLGD L G v A V ENYKVAISTAVIVEVS A T A DEVEER Q K L VRA L TELPL G ARK L RL 582
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 360 KHKEVESE L AAARERLQEQASD L VLKASHIGMLQATQMTQE V TIKD L ES - E KSRAN E RLCQL E EERAFLQ S RTQS L D E EQ 438
Cdd:pfam02463 583 LIPKLKLP L KSIAVLEIDPILN L AQLDKATLEADEDDKRAK V VEGI L KD t E LTKLK E SAKAK E SGLRKGV S LEEG L A E KS 662
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 439 KQQV - L ELEK K VNEAKRTQ QE YY E M EL KNLQNRLEGEVAQLN E AHG K TLEELARKHHMAIE A VHSNASR DKI KLQTE L EE 517
Cdd:pfam02463 663 EVKA s L SELT K ELLEIQEL QE KA E S EL AKEEILRRQLEIKKK E QRE K EELKKLKLEAEELL A DRVQEAQ DKI NEELK L LK 742
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 518 Q YKK E KLSL EE DKNQLQL E L E SL K QA L GD K LTSANQ E IGRLQD L VRKS E Q glgsa E GLISSLQDSQER L QS EL DLTKGR L 597
Cdd:pfam02463 743 Q KID E EEEE EE KSRLKKE E K E EE K SE L SL K EKELAE E REKTEK L KVEE E K ----- E EKLKAQEEELRA L EE EL KEEAEL L 817
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965745 598 K E TKDALLNV E AELQQ E RH E HEQT L ATMKEE EKL RVDR mahd LE IKWT E NLRQ E CSKLRQELRLQH EE D K KSAMSQLLQL 677
Cdd:pfam02463 818 E E EQLLIEQE E KIKEE E LE E LALE L KEEQKL EKL AEEE ---- LE RLEE E ITKE E LLQELLLKEEEL EE Q K LKDELESKEE 893
650 660
....*....|....*....|..
gi 568965745 678 KE R E KNAARDSWQK K VED L LNQ 699
Cdd:pfam02463 894 KE K E EKKELEEESQ K LNL L EEK 915
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
