|
Name |
Accession |
Description |
Interval |
E-value |
| FAM184 |
pfam15665 |
Family with sequence similarity 184, A and B; The function of FAM184 is not known. |
57-267 |
2.36e-71 |
|
Family with sequence similarity 184, A and B; The function of FAM184 is not known.
Pssm-ID: 464788 [Multi-domain] Cd Length: 211 Bit Score: 236.48 E-value: 2.36e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 57 VIYALNTRNDEHDAAIQALKDAHEEEIQQILAETREKILLYKSKVTEELDLRRKIQVLEASLEDHMKMKQEALTEFEAYK 136
Cdd:pfam15665 1 VIYALNTKNDEHEAEIQALKEAHEEEIQQILAETREKILQYKSKIGEELDLKRRIQTLEESLEQHERMKRQALTEFEQYK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 137 RRVEDMQLCAEAQHVQRIVTMSREVEEIRKKFEERLRSFGQLQVQFENDKQAALEDLRTTHRLEVQELLKSQQNHSSSVK 216
Cdd:pfam15665 81 RRVEERELKAEAEHRQRVVELSREVEEAKRAFEEKLESFEQLQAQFEQEKRKALEELRAKHRQEIQELLTTQRAQSASSL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568965737 217 LGQEKAEGLHRMEVEALNNTVKELRLEKKQLIEEYEGKLSKAQVFYERELD 267
Cdd:pfam15665 161 AEQEKLEELHKAELESLRKEVEDLRKEKKKLAEEYEQKLSKAQAFYERELE 211
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
364-922 |
1.54e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.36 E-value: 1.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 364 VESELAAARERLQEQAS---------------DLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQ 428
Cdd:COG1196 194 ILGELERQLEPLERQAEkaeryrelkeelkelEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 429 SRTQSLDEEQKQQVLELEKKVNEAKRTQQE--YYEMELKNLQNRLEGEVAQLNEAHGKTLEELARKHHMAIEAVHSNASR 506
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDiaRLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 507 DKIKLQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERL 586
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 587 QSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATMKEEEKLRVDRMAHDLEIKWTENLRQEcsklRQELRLQHEED 666
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE----AEADYEGFLEG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 667 KKSAMSQLLQLKEREKNAARDSWQKKVEDLLnqRHSLGEALHKSINN--------ISLLKQNLELQLCQSQTSLQQLQAQ 738
Cdd:COG1196 510 VKAALLLAGLRGLAGAVAVLIGVEAAYEAAL--EAALAAALQNIVVEddevaaaaIEYLKAAKAGRATFLPLDKIRARAA 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 739 FTQERQRLTQELEELEEQHQQRHKSLKEAHV---LAFQTMEEE-KEKEQRALETHLQQKHSAELQSLKDAHRESMEGFRV 814
Cdd:COG1196 588 LAAALARGAIGAAVDLVASDLREADARYYVLgdtLLGRTLVAArLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSR 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 815 EMEQELQTLRFELEDEGKAMLASLRSELNHQHAASIDLLRHSHHQELAAAKMELERSIDISRRQSKEHMCRISDLQEE-- 892
Cdd:COG1196 668 RELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEel 747
|
570 580 590
....*....|....*....|....*....|
gi 568965737 893 LRHREHHITDLDKEVQHLHENINTLTKELE 922
Cdd:COG1196 748 LEEEALEELPEPPDLEELERELERLEREIE 777
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
278-1019 |
4.48e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.86 E-value: 4.48e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 278 ESLQASRDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDDakegemaL 357
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN-------L 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 358 LSKHKEVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEEERaflqsrtqsldEE 437
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL-----------ET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 438 QKQQVLELEKKVNEAkRTQQEYYEMELKNLQNRLEGEVAQlNEAHGKTLEELARKHHMAIEAVHSNASRDKIKLQTELEE 517
Cdd:TIGR02168 384 LRSKVAQLELQIASL-NNEIERLEARLERLEDRRERLQQE-IEELLKKLEEAELKELQAELEELEEELEELQEELERLEE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 518 QYKKEKLSLEEDKNQLQLELESLKQaLGDKLTSANQEIGRLQDL------VRKSEQGLGSAEGLISSLQDSQERLQSELD 591
Cdd:TIGR02168 462 ALEELREELEEAEQALDAAERELAQ-LQARLDSLERLQENLEGFsegvkaLLKNQSGLSGILGVLSELISVDEGYEAAIE 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 592 LTKG-RL-----KETKDALLNVEAELQQERHEHEQTLATMKEEEKLRVDRMAHDLEIKWTENLRQECSKLRQELRLQHE- 664
Cdd:TIGR02168 541 AALGgRLqavvvENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSy 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 665 --------EDKKSAMSQLLQLKEREKNAARDSWQKKVEDLLNQRHSLGEA--LHKSiNNISLLKQNLELQLCQSQTSLQQ 734
Cdd:TIGR02168 621 llggvlvvDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSsiLERR-REIEELEEKIEELEEKIAELEKA 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 735 LQAQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRALETHLQQKHSAELQSLKDAhRESMEGFRV 814
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER-LEEAEEELA 778
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 815 EMEQELQTLRFELEdEGKAMLASLRSELNHQHAAsidllrhshHQELAAAKMELERSIDISRRQSKEHMCRISDLQEELR 894
Cdd:TIGR02168 779 EAEAEIEELEAQIE-QLKEELKALREALDELRAE---------LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 895 HREHHITDLDKEVQHLHENINTLTKELELKGKEilrvRSESNQQMRLHEQDL----NKRLEKELDVMTADH-LREKNIMR 969
Cdd:TIGR02168 849 ELSEDIESLAAEIEELEELIEELESELEALLNE----RASLEEALALLRSELeelsEELRELESKRSELRReLEELREKL 924
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 568965737 970 ADFN--------KTNELLKEINAALQVSLEDMEEKYLMRESRPEDIQ-MIAELKSLITE 1019
Cdd:TIGR02168 925 AQLElrleglevRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARrRLKRLENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
30-599 |
2.89e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 2.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 30 AQLAGHNMDYSQDMHLKMSKKIAQLTKVIYALNTRNDEHDAAIQALKDAHEEEIQQIlaetrekillyKSKVTEELDLRR 109
Cdd:COG1196 227 AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL-----------EEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 110 KIQVLEASLEDHMKMKQEALTEFEAYKRRVEDMQLcAEAQHVQRIVTMSREVEEIRKKFEERLRSFGQLQVQFENDKQAA 189
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEE-ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 190 LEDLRTTHRLEVQEL-LKSQQNHSSSVKLGQEKAEGLHRMEVEALNNTVKELRLEKKQLIEEYEgKLSKAQVFYERELDN 268
Cdd:COG1196 375 AEAEEELEELAEELLeALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE-EEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 269 LKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKcqKLQMALATAENNVQVLQKQLD 348
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV--KAALLLAGLRGLAGAVAVLIG 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 349 DAKEGEMALlskhkeVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQ 428
Cdd:COG1196 532 VEAAYEAAL------EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVA 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 429 SRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEGEVAQLNEAHGKTLEELARKHHMAIEAVHSNASRDK 508
Cdd:COG1196 606 SDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELA 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 509 IKLQTELEEQYKKEKLSLEEDK--NQLQLELESLKQALGDKLTSANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERL 586
Cdd:COG1196 686 ERLAEEELELEEALLAEEEEERelAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL 765
|
570
....*....|...
gi 568965737 587 QSELDLTKGRLKE 599
Cdd:COG1196 766 ERELERLEREIEA 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
107-451 |
6.14e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 6.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 107 LRRKIQVLEASLEDHMKMKQEALTEFEAYKRRVEDMQlcaeaqhvQRIVTMSREVEEIRKKFEERLRSFGQLQVQFENdK 186
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE--------EDLSSLEQEIENVKSELKELEARIEELEEDLHK-L 777
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 187 QAALEDLrttHRLEVQELLKSQQNHSSSVklgqekaEGLHRMEVEALNNTvkELRLEKKQLIEEYEGKLSKAQVFYEREL 266
Cdd:TIGR02169 778 EEALNDL---EARLSHSRIPEIQAELSKL-------EEEVSRIEARLREI--EQKLNRLTLEKEYLEKEIQELQEQRIDL 845
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 267 DNLKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQ 346
Cdd:TIGR02169 846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 347 LDdakegemALLSKHKEVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVT---IKDLESEKSRANE---RLCQL 420
Cdd:TIGR02169 926 LE-------ALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNmlaIQEYEEVLKRLDElkeKRAKL 998
|
330 340 350
....*....|....*....|....*....|.
gi 568965737 421 EEERAFLQSRTQSLDEEQKQQVLELEKKVNE 451
Cdd:TIGR02169 999 EEERKAILERIEEYEKKKREVFMEAFEAINE 1029
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
183-1032 |
1.18e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.05 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 183 ENDKQAALEDLRTTHRLEVQELLKSQQNHSSSVKLGQEKAEGLHRMEVEALNNTVKELRLEKKQLIEEYEGKLSKAQVFY 262
Cdd:pfam02463 181 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 263 ERELDNLKRSQLFTAESLQASRDKEaDLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQV 342
Cdd:pfam02463 261 EKEEEKLAQVLKENKEEEKEKKLQE-EELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 343 LQKQLDDAKEGEMALLSKHKEVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEE 422
Cdd:pfam02463 340 LEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLED 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 423 ERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEGEVA----QLNEAHGKTLEELARKHHMAIE 498
Cdd:pfam02463 420 LLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLlketQLVKLQEQLELLLSRQKLEERS 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 499 AVHSNASRDKIKLQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVRKSEQ-GLGSAEGLIS 577
Cdd:pfam02463 500 QKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRaLTELPLGARK 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 578 SLQDSQERLQSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATMKEEEKLRVDRMAHDLEIKwtenlrqecSKLRQ 657
Cdd:pfam02463 580 LRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKE---------SGLRK 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 658 ELRLQHEEDKKSAMSQLLQLKEREKNAARDSWQKKVEDLLNQRHSLGEalhksiNNISLLKQNLELQLCQSQTSLQQLQA 737
Cdd:pfam02463 651 GVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQ------LEIKKKEQREKEELKKLKLEAEELLA 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 738 QFTQERQRLTQELEELEEQHQQRHKSLKEAHvlafQTMEEEKEKEQRALETHLQQKHSAELQSLKDAHRESMEGFRVEME 817
Cdd:pfam02463 725 DRVQEAQDKINEELKLLKQKIDEEEEEEEKS----RLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQE 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 818 QELQTLRFELEDEGKAMLASLRSELNHQHAasIDLLRHSHHQELAAAKMELERSIDISRRQSKEHMCRISDLQEELRHRE 897
Cdd:pfam02463 801 EELRALEEELKEEAELLEEEQLLIEQEEKI--KEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE 878
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 898 HHITDLDKEVQHLHENINTLTKELELKGKEILRVRSESNQQMrLHEQDLNKRLEKELDVMTADHLREKNIMRADFNKTNE 977
Cdd:pfam02463 879 LEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIE-ERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEE 957
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*....
gi 568965737 978 LLKEINAALQVSLEDMEEKYLMRESRPEDIQ----MIAELKSLITERDQVIKKLIQKKK 1032
Cdd:pfam02463 958 EEERNKRLLLAKEELGKVNLMAIEEFEEKEErynkDELEKERLEEEKKKLIRAIIEETC 1016
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
404-833 |
5.83e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 5.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 404 KDLESEKSRANERLCQLEEERAflQSRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEgEVAQLNEAHG 483
Cdd:PTZ00121 1322 KKAEEAKKKADAAKKKAEEAKK--AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE-EKKKADEAKK 1398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 484 KTlEELARKHHMAIEAVHSNASRDKIKLQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVR 563
Cdd:PTZ00121 1399 KA-EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKK 1477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 564 KSEQGLGSAEglissLQDSQERLQSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATMKEEEKLRVDRMAHDLEIK 643
Cdd:PTZ00121 1478 KAEEAKKADE-----AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 644 WTENLRQECSKLRQELRLQHEEDKKSAMSQLLQLKEREKNAARDSWQKKVEDLLNQRHSLGEALHKSINNISLLKQNLEL 723
Cdd:PTZ00121 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEK 1632
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 724 QLCQSQTSLQQLQAQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRALETHLQQKHSAELQSLKD 803
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEA 1712
|
410 420 430
....*....|....*....|....*....|....
gi 568965737 804 AHRESMEGFRVEMEQEL----QTLRFELEDEGKA 833
Cdd:PTZ00121 1713 EEKKKAEELKKAEEENKikaeEAKKEAEEDKKKA 1746
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
69-608 |
9.30e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 9.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 69 DAAIQALKD--AHEEEIQQILAETREKILLYKSKVTEELDLRRKIQVLEASLEDHMKMKQEALTEFEAYKRRVEDMQLCA 146
Cdd:PRK03918 175 KRRIERLEKfiKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 147 EAQHvQRIVTMSREVEEIRKKFEERLRSFGQL-QVQFENDKQAALEDLRTTHRLEVQELLKSQQNHSSSVKLGQEKAEgl 225
Cdd:PRK03918 255 RKLE-EKIRELEERIEELKKEIEELEEKVKELkELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK-- 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 226 hrmEVEALNNTVKELRLEKKQLIEEYEgKLSKAQVFYERELDNLKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTI 305
Cdd:PRK03918 332 ---ELEEKEERLEELKKKLKELEKRLE-ELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEI 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 306 GKLKTELQMVQDEASSLldkcQKLQMALATAENNVQVLQKQLDDAKEGEM---------ALLSKHKEVESELAAARERLQ 376
Cdd:PRK03918 408 SKITARIGELKKEIKEL----KKAIEELKKAKGKCPVCGRELTEEHRKELleeytaelkRIEKELKEIEEKERKLRKELR 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 377 EQASDLVLKASHIGMLQATQMTQEVTIK----DLEsEKSRANERLCQLEEERAFLQSRTQSLDEEQKqQVLELEKKVNEA 452
Cdd:PRK03918 484 ELEKVLKKESELIKLKELAEQLKELEEKlkkyNLE-ELEKKAEEYEKLKEKLIKLKGEIKSLKKELE-KLEELKKKLAEL 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 453 KRTQQEyYEMELKNLQNRLEGEVAQLNEAHGKTLEELARKHHMAIEAVHSnasrdKIKLQTELEEQyKKEKLSLEEDKNQ 532
Cdd:PRK03918 562 EKKLDE-LEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDA-----EKELEREEKEL-KKLEEELDKAFEE 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 533 LQL---ELESLKQALGDKLTSANQE-IGRLQDLVRKSEQGLGSAEGLISSLQDSQERLQSELDLTKGRLKETKDALLNVE 608
Cdd:PRK03918 635 LAEtekRLEELRKELEELEKKYSEEeYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
274-449 |
1.04e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.36 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 274 LFTAESLQASRDKEADLRKEFQGQEAILRKT---IGKLKTELQMVQDEASSLLDKCQkLQMALATAENNVQVLQKQLDDA 350
Cdd:PRK11281 69 LALLDKIDRQKEETEQLKQQLAQAPAKLRQAqaeLEALKDDNDEETRETLSTLSLRQ-LESRLAQTLDQLQNAQNDLAEY 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 351 KEGEMALLSKHKEVESELAAARERLQE--------QASDLVLKASHIGMLQATQ-------------MTQEVTIKDL-ES 408
Cdd:PRK11281 148 NSQLVSLQTQPERAQAALYANSQRLQQirnllkggKVGGKALRPSQRVLLQAEQallnaqndlqrksLEGNTQLQDLlQK 227
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568965737 409 EKSRANERLCQLEEERAFLQS------RTQSldEEQKQQVLELEKKV 449
Cdd:PRK11281 228 QRDYLTARIQRLEHQLQLLQEainskrLTLS--EKTVQEAQSQDEAA 272
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
232-471 |
3.12e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 3.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 232 ALNNTVKELRLEKKQL---IEEYEGKLSKAQVFYERELDNLKRSQLFTAESLQASRDKEADLrKEFQGQEAILRKTIGKL 308
Cdd:COG4942 17 AQADAAAEAEAELEQLqqeIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQEL-AALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 309 KTELQMVQDEASSLLDKCQKLQ-----MALATAENNVQVLQKQ--LDDAKEGEMALLSKHKEVESELAAARERLQEQASD 381
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGrqpplALLLSPEDFLDAVRRLqyLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 382 LvlkashigmlQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYE 461
Cdd:COG4942 176 L----------EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
250
....*....|
gi 568965737 462 MELKNLQNRL 471
Cdd:COG4942 246 AGFAALKGKL 255
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| FAM184 |
pfam15665 |
Family with sequence similarity 184, A and B; The function of FAM184 is not known. |
57-267 |
2.36e-71 |
|
Family with sequence similarity 184, A and B; The function of FAM184 is not known.
Pssm-ID: 464788 [Multi-domain] Cd Length: 211 Bit Score: 236.48 E-value: 2.36e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 57 VIYALNTRNDEHDAAIQALKDAHEEEIQQILAETREKILLYKSKVTEELDLRRKIQVLEASLEDHMKMKQEALTEFEAYK 136
Cdd:pfam15665 1 VIYALNTKNDEHEAEIQALKEAHEEEIQQILAETREKILQYKSKIGEELDLKRRIQTLEESLEQHERMKRQALTEFEQYK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 137 RRVEDMQLCAEAQHVQRIVTMSREVEEIRKKFEERLRSFGQLQVQFENDKQAALEDLRTTHRLEVQELLKSQQNHSSSVK 216
Cdd:pfam15665 81 RRVEERELKAEAEHRQRVVELSREVEEAKRAFEEKLESFEQLQAQFEQEKRKALEELRAKHRQEIQELLTTQRAQSASSL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568965737 217 LGQEKAEGLHRMEVEALNNTVKELRLEKKQLIEEYEGKLSKAQVFYERELD 267
Cdd:pfam15665 161 AEQEKLEELHKAELESLRKEVEDLRKEKKKLAEEYEQKLSKAQAFYERELE 211
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
364-922 |
1.54e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.36 E-value: 1.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 364 VESELAAARERLQEQAS---------------DLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQ 428
Cdd:COG1196 194 ILGELERQLEPLERQAEkaeryrelkeelkelEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 429 SRTQSLDEEQKQQVLELEKKVNEAKRTQQE--YYEMELKNLQNRLEGEVAQLNEAHGKTLEELARKHHMAIEAVHSNASR 506
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDiaRLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 507 DKIKLQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERL 586
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 587 QSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATMKEEEKLRVDRMAHDLEIKWTENLRQEcsklRQELRLQHEED 666
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE----AEADYEGFLEG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 667 KKSAMSQLLQLKEREKNAARDSWQKKVEDLLnqRHSLGEALHKSINN--------ISLLKQNLELQLCQSQTSLQQLQAQ 738
Cdd:COG1196 510 VKAALLLAGLRGLAGAVAVLIGVEAAYEAAL--EAALAAALQNIVVEddevaaaaIEYLKAAKAGRATFLPLDKIRARAA 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 739 FTQERQRLTQELEELEEQHQQRHKSLKEAHV---LAFQTMEEE-KEKEQRALETHLQQKHSAELQSLKDAHRESMEGFRV 814
Cdd:COG1196 588 LAAALARGAIGAAVDLVASDLREADARYYVLgdtLLGRTLVAArLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSR 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 815 EMEQELQTLRFELEDEGKAMLASLRSELNHQHAASIDLLRHSHHQELAAAKMELERSIDISRRQSKEHMCRISDLQEE-- 892
Cdd:COG1196 668 RELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEel 747
|
570 580 590
....*....|....*....|....*....|
gi 568965737 893 LRHREHHITDLDKEVQHLHENINTLTKELE 922
Cdd:COG1196 748 LEEEALEELPEPPDLEELERELERLEREIE 777
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
278-1019 |
4.48e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.86 E-value: 4.48e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 278 ESLQASRDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDDakegemaL 357
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN-------L 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 358 LSKHKEVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEEERaflqsrtqsldEE 437
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL-----------ET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 438 QKQQVLELEKKVNEAkRTQQEYYEMELKNLQNRLEGEVAQlNEAHGKTLEELARKHHMAIEAVHSNASRDKIKLQTELEE 517
Cdd:TIGR02168 384 LRSKVAQLELQIASL-NNEIERLEARLERLEDRRERLQQE-IEELLKKLEEAELKELQAELEELEEELEELQEELERLEE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 518 QYKKEKLSLEEDKNQLQLELESLKQaLGDKLTSANQEIGRLQDL------VRKSEQGLGSAEGLISSLQDSQERLQSELD 591
Cdd:TIGR02168 462 ALEELREELEEAEQALDAAERELAQ-LQARLDSLERLQENLEGFsegvkaLLKNQSGLSGILGVLSELISVDEGYEAAIE 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 592 LTKG-RL-----KETKDALLNVEAELQQERHEHEQTLATMKEEEKLRVDRMAHDLEIKWTENLRQECSKLRQELRLQHE- 664
Cdd:TIGR02168 541 AALGgRLqavvvENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSy 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 665 --------EDKKSAMSQLLQLKEREKNAARDSWQKKVEDLLNQRHSLGEA--LHKSiNNISLLKQNLELQLCQSQTSLQQ 734
Cdd:TIGR02168 621 llggvlvvDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSsiLERR-REIEELEEKIEELEEKIAELEKA 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 735 LQAQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRALETHLQQKHSAELQSLKDAhRESMEGFRV 814
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER-LEEAEEELA 778
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 815 EMEQELQTLRFELEdEGKAMLASLRSELNHQHAAsidllrhshHQELAAAKMELERSIDISRRQSKEHMCRISDLQEELR 894
Cdd:TIGR02168 779 EAEAEIEELEAQIE-QLKEELKALREALDELRAE---------LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 895 HREHHITDLDKEVQHLHENINTLTKELELKGKEilrvRSESNQQMRLHEQDL----NKRLEKELDVMTADH-LREKNIMR 969
Cdd:TIGR02168 849 ELSEDIESLAAEIEELEELIEELESELEALLNE----RASLEEALALLRSELeelsEELRELESKRSELRReLEELREKL 924
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 568965737 970 ADFN--------KTNELLKEINAALQVSLEDMEEKYLMRESRPEDIQ-MIAELKSLITE 1019
Cdd:TIGR02168 925 AQLElrleglevRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARrRLKRLENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
245-793 |
1.26e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 1.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 245 KQLIEEYEGKLSKAQVFYERELDNLKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLD 324
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 325 KCQKLQMALATAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVTIK 404
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 405 DLESEKSRANERLCQLEEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEGEVAQLNEAHGK 484
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 485 TLEELARKHHMAIEAVHSNASRDKIKLQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVRK 564
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAA 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 565 SEQGLGSAEG------LISSLQDSQERLQSELDLTKGR-----LKETKDALLNVEAELQQERHEHEQTLATMKEEEKLRV 633
Cdd:COG1196 536 YEAALEAALAaalqniVVEDDEVAAAAIEYLKAAKAGRatflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARY 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 634 DRMAHDLEIKWTENLRQECSKLRQELRLQHEEDKKSAMSQLLQLKEREKNAARDSWQKKVEDLLNQRHSLGEALHKSINN 713
Cdd:COG1196 616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 714 ISLLKQNLELQLCQSQTSLQQLQAQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRALETHLQQK 793
Cdd:COG1196 696 EEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
30-599 |
2.89e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 2.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 30 AQLAGHNMDYSQDMHLKMSKKIAQLTKVIYALNTRNDEHDAAIQALKDAHEEEIQQIlaetrekillyKSKVTEELDLRR 109
Cdd:COG1196 227 AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL-----------EEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 110 KIQVLEASLEDHMKMKQEALTEFEAYKRRVEDMQLcAEAQHVQRIVTMSREVEEIRKKFEERLRSFGQLQVQFENDKQAA 189
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEE-ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 190 LEDLRTTHRLEVQEL-LKSQQNHSSSVKLGQEKAEGLHRMEVEALNNTVKELRLEKKQLIEEYEgKLSKAQVFYERELDN 268
Cdd:COG1196 375 AEAEEELEELAEELLeALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE-EEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 269 LKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKcqKLQMALATAENNVQVLQKQLD 348
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV--KAALLLAGLRGLAGAVAVLIG 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 349 DAKEGEMALlskhkeVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQ 428
Cdd:COG1196 532 VEAAYEAAL------EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVA 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 429 SRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEGEVAQLNEAHGKTLEELARKHHMAIEAVHSNASRDK 508
Cdd:COG1196 606 SDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELA 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 509 IKLQTELEEQYKKEKLSLEEDK--NQLQLELESLKQALGDKLTSANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERL 586
Cdd:COG1196 686 ERLAEEELELEEALLAEEEEERelAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL 765
|
570
....*....|...
gi 568965737 587 QSELDLTKGRLKE 599
Cdd:COG1196 766 ERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
82-920 |
1.08e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 1.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 82 EIQQILAETREKILLYKSKVTEELDLRRKIQVLEASLEDHMKMKQEALTEFEAYKRRVEDmqlcaeaqHVQRIVTMSREV 161
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA--------LANEISRLEQQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 162 EEIRKKFEERLRSFGQLQVQFENDKQAALEDLRTTHRLEVQ--------ELLKSQQNHSSSVKLGQEKAEGLHRMEVEAL 233
Cdd:TIGR02168 305 QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKleelkeelESLEAELEELEAELEELESRLEELEEQLETL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 234 NNTVKELRLEKKQL---IEEYEGKLSKAQvfyereldnlKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTIGKLKT 310
Cdd:TIGR02168 385 RSKVAQLELQIASLnneIERLEARLERLE----------DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQE 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 311 ELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQ-------------- 376
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGilgvlselisvdeg 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 377 -EQASDLVLKAShigmLQATQM-TQEVTIKDLESEKSRANERLCQLEEERAflqsRTQSLDEEQKQQVLELEKKVNEAKR 454
Cdd:TIGR02168 535 yEAAIEAALGGR----LQAVVVeNLNAAKKAIAFLKQNELGRVTFLPLDSI----KGTEIQGNDREILKNIEGFLGVAKD 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 455 TqqEYYEMELKNLQNRLEGEVAQLNEahGKTLEELARK--HHMAI-----EAVHSNASRDKIKLQTELEEQYKKEKLS-L 526
Cdd:TIGR02168 607 L--VKFDPKLRKALSYLLGGVLVVDD--LDNALELAKKlrPGYRIvtldgDLVRPGGVITGGSAKTNSSILERRREIEeL 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 527 EEDKNQLQLELESLKQALGD---KLTSANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERLQSELDLTKGRLKETKDA 603
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAElrkELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 604 LLNVEAELQQERHEHEQTLATMKEEEKlRVDRMAHDLeikwtENLRQECSKLRQELRLQHEEdkksamsqLLQLKEREKN 683
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEA-QIEQLKEEL-----KALREALDELRAELTLLNEE--------AANLRERLES 828
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 684 AARD--SWQKKVEDLLNQRHSLGEALHKSINNISLLKQNLElqlcqsqtslqqlqaQFTQERQRLTQELEELEEQHQQRH 761
Cdd:TIGR02168 829 LERRiaATERRLEDLEEQIEELSEDIESLAAEIEELEELIE---------------ELESELEALLNERASLEEALALLR 893
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 762 KSLKEAhvlafQTMEEEKEKEQRALETHLQqkhsaELQSLKDAHRESMEGFRVEMEQELQTLRFELEDEGKAMLAslrse 841
Cdd:TIGR02168 894 SELEEL-----SEELRELESKRSELRRELE-----ELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEA----- 958
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568965737 842 lnhqHAASIDLLRHSHHQELAAAKMELERSIDISRRQSKEhmcrISDLQEELRHREHHITDLDKEVQHLHENINTLTKE 920
Cdd:TIGR02168 959 ----LENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEE----YEELKERYDFLTAQKEDLTEAKETLEEAIEEIDRE 1029
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
228-921 |
3.22e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 3.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 228 MEVEALNNTVKELRLEKKQLIEEYEgKLSKAQVFYERELDNLkRSQLFTAESLQASRDKE----ADLRKEFQGQEAILRK 303
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELE-ELTAELQELEEKLEEL-RLEVSELEEEIEELQKElyalANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 304 TIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQEQASDLV 383
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 384 LKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYEME 463
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 464 LKNLQNRLEGEVAQLNEAHGK-----TLEELARKHHMAIEAVHSNASRDKIKLQT-----ELEEQYKKEKLS-------- 525
Cdd:TIGR02168 470 LEEAEQALDAAERELAQLQARldsleRLQENLEGFSEGVKALLKNQSGLSGILGVlseliSVDEGYEAAIEAalggrlqa 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 526 -LEEDKNQLQLELESLKQALGDKLT-------SANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERLQSELDLTK--- 594
Cdd:TIGR02168 550 vVVENLNAAKKAIAFLKQNELGRVTflpldsiKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLvvd 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 595 ------GRLKETKDALLNVEA-----------------------ELQQERHEHEQTLATMKEEEKLRVDRMAhDLEIKwT 645
Cdd:TIGR02168 630 dldnalELAKKLRPGYRIVTLdgdlvrpggvitggsaktnssilERRREIEELEEKIEELEEKIAELEKALA-ELRKE-L 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 646 ENLRQECSKLRQELRlQHEEDKKSAMSQLLQLKEREKNAA--RDSWQKKVEDLLNQRHSLGEALHKSINNISLLKQNLEL 723
Cdd:TIGR02168 708 EELEEELEQLRKELE-ELSRQISALRKDLARLEAEVEQLEerIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 724 QlcqsqtslQQLQAQFTQERQRLTQELEELEeqhqQRHKSLKEahvlAFQTMEEEKEKEQRalETHLQQKHSAELQSLKD 803
Cdd:TIGR02168 787 L--------EAQIEQLKEELKALREALDELR----AELTLLNE----EAANLRERLESLER--RIAATERRLEDLEEQIE 848
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 804 AHRESMEGFRVEMEqELQTLRFELEDEGKAMLAslrselnhqhaasidlLRHSHHQELAAAKMELErsidISRRQSKEHM 883
Cdd:TIGR02168 849 ELSEDIESLAAEIE-ELEELIEELESELEALLN----------------ERASLEEALALLRSELE----ELSEELRELE 907
|
730 740 750
....*....|....*....|....*....|....*...
gi 568965737 884 CRISDLQEELRHREHHITDLDKEVQHLHENINTLTKEL 921
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
49-688 |
2.81e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 2.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 49 KKIAQLTKVIYALNTRNDEHDAAIQALKDAHEEEIQQILAETREKILLYKSKV----TEELDLRRKIQVLEASLEDHMKM 124
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIgeleAEIASLERSIAEKERELEDAEER 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 125 KQEALTEFEAYKRRVEDMQLCAEAQHVQRIVTMSR-------------EVEEIRKKFEERLRSFGQLQVQFENDKQAALE 191
Cdd:TIGR02169 324 LAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEyaelkeeledlraELEEVDKEFAETRDELKDYREKLEKLKREINE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 192 DLRTTHRL--EVQELLKSQQNHSSSVK-LGQEKAEGLHRMEVEALNNTVKELRLE---------------KKQLIEEYEG 253
Cdd:TIGR02169 404 LKRELDRLqeELQRLSEELADLNAAIAgIEAKINELEEEKEDKALEIKKQEWKLEqlaadlskyeqelydLKEEYDRVEK 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 254 KLSKAQvfyeRELDNLKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKtIGKLKTELQ--------------MVQDEA 319
Cdd:TIGR02169 484 ELSKLQ----RELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQ-LGSVGERYAtaievaagnrlnnvVVEDDA 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 320 SSL----LDKCQKLQMALATAENNVQVLQKQL------------------DDAKEGEMALLSKHKEVESELAAARE---- 373
Cdd:TIGR02169 559 VAKeaieLLKRRKAGRATFLPLNKMRDERRDLsilsedgvigfavdlvefDPKYEPAFKYVFGDTLVVEDIEAARRlmgk 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 374 -RLQEQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQSRTqsldEEQKQQVLELEKKVNEA 452
Cdd:TIGR02169 639 yRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSEL----RRIENRLDELSQELSDA 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 453 KRTQQeyyemELKNLQNRLEGEVAQLNEahgkTLEELARKhhmaieavHSNASRDKIKLQTELEEqYKKEKLSLEEDKNQ 532
Cdd:TIGR02169 715 SRKIG-----EIEKEIEQLEQEEEKLKE----RLEELEED--------LSSLEQEIENVKSELKE-LEARIEELEEDLHK 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 533 LQLELESLKQALG--------DKLTSANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERLQSELDLTKGRLKETKDAL 604
Cdd:TIGR02169 777 LEEALNDLEARLShsripeiqAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI 856
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 605 LNVEA---ELQQERHEHEQTLATMKEE-EKLRVDRMAHDLEIKWTENLRQECSKLRQELRLQHEEDKKSAMSQLLQLKER 680
Cdd:TIGR02169 857 ENLNGkkeELEEELEELEAALRDLESRlGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936
|
....*...
gi 568965737 681 EKNAARDS 688
Cdd:TIGR02169 937 EDPKGEDE 944
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
107-451 |
6.14e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 6.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 107 LRRKIQVLEASLEDHMKMKQEALTEFEAYKRRVEDMQlcaeaqhvQRIVTMSREVEEIRKKFEERLRSFGQLQVQFENdK 186
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE--------EDLSSLEQEIENVKSELKELEARIEELEEDLHK-L 777
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 187 QAALEDLrttHRLEVQELLKSQQNHSSSVklgqekaEGLHRMEVEALNNTvkELRLEKKQLIEEYEGKLSKAQVFYEREL 266
Cdd:TIGR02169 778 EEALNDL---EARLSHSRIPEIQAELSKL-------EEEVSRIEARLREI--EQKLNRLTLEKEYLEKEIQELQEQRIDL 845
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 267 DNLKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQ 346
Cdd:TIGR02169 846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 347 LDdakegemALLSKHKEVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVT---IKDLESEKSRANE---RLCQL 420
Cdd:TIGR02169 926 LE-------ALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNmlaIQEYEEVLKRLDElkeKRAKL 998
|
330 340 350
....*....|....*....|....*....|.
gi 568965737 421 EEERAFLQSRTQSLDEEQKQQVLELEKKVNE 451
Cdd:TIGR02169 999 EEERKAILERIEEYEKKKREVFMEAFEAINE 1029
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
183-1032 |
1.18e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.05 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 183 ENDKQAALEDLRTTHRLEVQELLKSQQNHSSSVKLGQEKAEGLHRMEVEALNNTVKELRLEKKQLIEEYEGKLSKAQVFY 262
Cdd:pfam02463 181 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 263 ERELDNLKRSQLFTAESLQASRDKEaDLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQV 342
Cdd:pfam02463 261 EKEEEKLAQVLKENKEEEKEKKLQE-EELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 343 LQKQLDDAKEGEMALLSKHKEVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEE 422
Cdd:pfam02463 340 LEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLED 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 423 ERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEGEVA----QLNEAHGKTLEELARKHHMAIE 498
Cdd:pfam02463 420 LLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLlketQLVKLQEQLELLLSRQKLEERS 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 499 AVHSNASRDKIKLQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVRKSEQ-GLGSAEGLIS 577
Cdd:pfam02463 500 QKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRaLTELPLGARK 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 578 SLQDSQERLQSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATMKEEEKLRVDRMAHDLEIKwtenlrqecSKLRQ 657
Cdd:pfam02463 580 LRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKE---------SGLRK 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 658 ELRLQHEEDKKSAMSQLLQLKEREKNAARDSWQKKVEDLLNQRHSLGEalhksiNNISLLKQNLELQLCQSQTSLQQLQA 737
Cdd:pfam02463 651 GVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQ------LEIKKKEQREKEELKKLKLEAEELLA 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 738 QFTQERQRLTQELEELEEQHQQRHKSLKEAHvlafQTMEEEKEKEQRALETHLQQKHSAELQSLKDAHRESMEGFRVEME 817
Cdd:pfam02463 725 DRVQEAQDKINEELKLLKQKIDEEEEEEEKS----RLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQE 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 818 QELQTLRFELEDEGKAMLASLRSELNHQHAasIDLLRHSHHQELAAAKMELERSIDISRRQSKEHMCRISDLQEELRHRE 897
Cdd:pfam02463 801 EELRALEEELKEEAELLEEEQLLIEQEEKI--KEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE 878
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 898 HHITDLDKEVQHLHENINTLTKELELKGKEILRVRSESNQQMrLHEQDLNKRLEKELDVMTADHLREKNIMRADFNKTNE 977
Cdd:pfam02463 879 LEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIE-ERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEE 957
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*....
gi 568965737 978 LLKEINAALQVSLEDMEEKYLMRESRPEDIQ----MIAELKSLITERDQVIKKLIQKKK 1032
Cdd:pfam02463 958 EEERNKRLLLAKEELGKVNLMAIEEFEEKEErynkDELEKERLEEEKKKLIRAIIEETC 1016
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
245-481 |
1.25e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 52.71 E-value: 1.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 245 KQLIEEYEGKLSKAQVFYERELDNLKrsqlftaESLQASRDKEADLRKE-----FQGQEAILRKTIGKLKTELQMVQDEA 319
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELR-------KELEEAEAALEEFRQKnglvdLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 320 SSLLDKCQKLQMALATAENNVQVLQkqlddAKEGEMALLSKHKEVESELAAARERLQEQASDLVlkashigmlqatQMTQ 399
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPELL-----QSPVIQQLRAQLAELEAELAELSARYTPNHPDVI------------ALRA 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 400 EvtIKDLESE-KSRANERLCQLEEERAFLQSRTQSLdeeqKQQVLELEKKVNEAKRTQQEYYEM--ELKNLQNRLEGEVA 476
Cdd:COG3206 299 Q--IAALRAQlQQEAQRILASLEAELEALQAREASL----QAQLAQLEARLAELPELEAELRRLerEVEVARELYESLLQ 372
|
....*
gi 568965737 477 QLNEA 481
Cdd:COG3206 373 RLEEA 377
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
415-630 |
4.09e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 4.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 415 ERLCQL---EEERAF-LQSRTQS------LDEEQKQQVLElEKKVNEAKRTQQEYYEmELKNLQNRLE---------GEV 475
Cdd:COG4913 180 ARLRRRlgiGSEKALrLLHKTQSfkpigdLDDFVREYMLE-EPDTFEAADALVEHFD-DLERAHEALEdareqiellEPI 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 476 AQLNEAHGKTLEELARKHHMAIEAVHSNASRDKIKLQTELEE------QYKKEKLSLEEDKNQLQLELESLKQAL----G 545
Cdd:COG4913 258 RELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEElraelaRLEAELERLEARLDALREELDELEAQIrgngG 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 546 DKLTSANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERLQSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATM 625
Cdd:COG4913 338 DRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDL 417
|
....*
gi 568965737 626 KEEEK 630
Cdd:COG4913 418 RRELR 422
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
410-794 |
4.39e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 4.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 410 KSRANERLCQLEEERAFLQsRTQSLDEEQKQQVLELEKKVNEAKRTQQeyYEMELKNLQNRLEgeVAQLNEAHGKtLEEL 489
Cdd:TIGR02168 171 KERRKETERKLERTRENLD-RLEDILNELERQLKSLERQAEKAERYKE--LKAELRELELALL--VLRLEELREE-LEEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 490 ARKHHMAIEAVHSnASRDKIKLQTELEEqYKKEKLSLEEDKNQLQLELESLkqalgdkltsaNQEIGRL-QDLVRKSEQg 568
Cdd:TIGR02168 245 QEELKEAEEELEE-LTAELQELEEKLEE-LRLEVSELEEEIEELQKELYAL-----------ANEISRLeQQKQILRER- 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 569 lgsaeglISSLQDSQERLQSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATMKEEEKLRvdRMAHDLEIKWTENL 648
Cdd:TIGR02168 311 -------LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL--EELESRLEELEEQL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 649 RQECSKLRqelrlQHEEDKKSAMSQLLQLKEREK--NAARDSWQKKVEDLLNQRHSLgeALHKSINNISLLKQNLElqlc 726
Cdd:TIGR02168 382 ETLRSKVA-----QLELQIASLNNEIERLEARLErlEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEELE---- 450
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568965737 727 QSQTSLQQLQAQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLafQTMEEEKEKEQRALETHLQQKH 794
Cdd:TIGR02168 451 ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL--ERLQENLEGFSEGVKALLKNQS 516
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
359-585 |
1.73e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 359 SKHKEVESELAAARERLQEQASDLvlkashiGMLQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQSRTQSLDEEQ 438
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKEL-------AALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 439 KQQVLELEKKVNEAKRTQQEYYEMELKN-LQNRLEGEVAQLNEAHGKTLEELARKHHMAIEAVhsNASRDKIKLQTELEE 517
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRLGRQPpLALLLSPEDFLDAVRRLQYLKYLAPARREQAEEL--RADLAELAALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568965737 518 QYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQER 585
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
341-701 |
2.18e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.68 E-value: 2.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 341 QVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQEQASDLVLKAS-------HIGMLQATQMTQEVTI-KDLESEKSR 412
Cdd:pfam12128 600 EELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTalknarlDLRRLFDEKQSEKDKKnKALAERKDS 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 413 ANERLCQLEEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTqqeyYEMELKNLQNRLEGEVAQLNEAHGKTLEELARK 492
Cdd:pfam12128 680 ANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQV----VEGALDAQLALLKAAIAARRSGAKAELKALETW 755
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 493 HHMAIEAVHSNASRDkIKLQTELE------EQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVRKSE 566
Cdd:pfam12128 756 YKRDLASLGVDPDVI-AKLKREIRtlerkiERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLI 834
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 567 QGLGSAEGLISSLQDSQERLQSELD--LTKGRLKETKDALLNVEAELQQERHEHEQTLATMkEEEKLRVDRMAHDLEiKW 644
Cdd:pfam12128 835 ADTKLRRAKLEMERKASEKQQVRLSenLRGLRCEMSKLATLKEDANSEQAQGSIGERLAQL-EDLKLKRDYLSESVK-KY 912
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568965737 645 TENLRQECSKLRQELRLQH-----EEDKKSAMSQLLQLKEREknaardsWQKKVEDLLNQRH 701
Cdd:pfam12128 913 VEHFKNVIADHSGSGLAETweslrEEDHYQNDKGIRLLDYRK-------LVPYLEQWFDVRV 967
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
274-485 |
4.67e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 4.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 274 LFTAESLQASRDKEADLRKEFQGqeaiLRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDDAKEG 353
Cdd:COG4942 9 LLLALAAAAQADAAAEAEAELEQ----LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 354 EMALLSKHKEVESELAAARERLQEQ---------------------ASDLVLKASHIGMLQATQMTQ----EVTIKDLES 408
Cdd:COG4942 85 LAELEKEIAELRAELEAQKEELAELlralyrlgrqpplalllspedFLDAVRRLQYLKYLAPARREQaeelRADLAELAA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568965737 409 EKSRANERLCQLEEERAFLQSRTQSLDEE--QKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEGEVAQLNEAHGKT 485
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALkaERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
404-833 |
5.83e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 5.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 404 KDLESEKSRANERLCQLEEERAflQSRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEgEVAQLNEAHG 483
Cdd:PTZ00121 1322 KKAEEAKKKADAAKKKAEEAKK--AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE-EKKKADEAKK 1398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 484 KTlEELARKHHMAIEAVHSNASRDKIKLQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVR 563
Cdd:PTZ00121 1399 KA-EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKK 1477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 564 KSEQGLGSAEglissLQDSQERLQSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATMKEEEKLRVDRMAHDLEIK 643
Cdd:PTZ00121 1478 KAEEAKKADE-----AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 644 WTENLRQECSKLRQELRLQHEEDKKSAMSQLLQLKEREKNAARDSWQKKVEDLLNQRHSLGEALHKSINNISLLKQNLEL 723
Cdd:PTZ00121 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEK 1632
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 724 QLCQSQTSLQQLQAQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRALETHLQQKHSAELQSLKD 803
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEA 1712
|
410 420 430
....*....|....*....|....*....|....
gi 568965737 804 AHRESMEGFRVEMEQEL----QTLRFELEDEGKA 833
Cdd:PTZ00121 1713 EEKKKAEELKKAEEENKikaeEAKKEAEEDKKKA 1746
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
512-699 |
1.08e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 512 QTELEEQYKKEKLSLEEDKNQLQLELESLKQ---ALGDKLTSANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERLQS 588
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKeekALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 589 ELDLTKGRLKETKDA------------LLNVEAELQQERHEH---EQTLATMKEEEKLRVDRMAHDLEIKWTENLRQECS 653
Cdd:COG4942 98 ELEAQKEELAELLRAlyrlgrqpplalLLSPEDFLDAVRRLQylkYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568965737 654 KLRQEL-----RLQHEEDKKSAMSQLLQLKEREKNAARDSWQKKVEDLLNQ 699
Cdd:COG4942 178 ALLAELeeeraALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
314-952 |
1.73e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 314 MVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQEQASDLVLKASHIGMLQ 393
Cdd:TIGR00618 184 MEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLK 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 394 aTQMTQEVTIKDLESEKSRANERLCQLEEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEG 473
Cdd:TIGR00618 264 -QLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 474 EVAQLNEAHgktleelARKHHMAIEAVHSNASRDKIKLQTELEEQYKKEKLSLEEDKNQLQL---ELESLKQALGDKLTS 550
Cdd:TIGR00618 343 QRRLLQTLH-------SQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSlckELDILQREQATIDTR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 551 ANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERLQSE------LDLTKGRLKETKDALLNVEAELQQE---RHEHEQT 621
Cdd:TIGR00618 416 TSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEklekihLQESAQSLKEREQQLQTKEQIHLQEtrkKAVVLAR 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 622 LATMKEEEKLRVDRMAHDLEIKWTENLRQECSKLRQELRLQHEEDKKSAMSQLLQLKEREKNAARDSWQKKVED-----L 696
Cdd:TIGR00618 496 LLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQqsfsiL 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 697 LNQRHSLGEALHKSINNISLLKQNLELQLCQSQTSLQQLQAQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLAFQ-TM 775
Cdd:TIGR00618 576 TQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQlTL 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 776 EEEKEKEQRALETHLQQKHSAELQSLKDAHR---ESMEGFRVEMEQELQTLRFELEDEGKamlaslrselNHQHAASIDL 852
Cdd:TIGR00618 656 TQERVREHALSIRVLPKELLASRQLALQKMQsekEQLTYWKEMLAQCQTLLRELETHIEE----------YDREFNEIEN 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 853 LRHSHHQELAAAKMELERSIDISRRQSKEHMCRISDLQEELRHREHHITDLDKEVQHLHENINTLTKELELKGKEILRVR 932
Cdd:TIGR00618 726 ASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLE 805
|
650 660
....*....|....*....|
gi 568965737 933 SESNQQMRLHEQDLNKRLEK 952
Cdd:TIGR00618 806 AEIGQEIPSDEDILNLQCET 825
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
262-895 |
2.42e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 2.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 262 YERELDNLKRsQLFTAESLQASRDKEADLRKEFQGQEAIL--------RKTIGKLKTELQMVQDEASSLLDKCQKLQMAL 333
Cdd:COG4913 240 AHEALEDARE-QIELLEPIRELAERYAAARERLAELEYLRaalrlwfaQRRLELLEAELEELRAELARLEAELERLEARL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 334 ATAENNVQVLQKQLDDAKEGEMALLskhkevESELAAARERLQEQASDLvlkASHIGMLQATQMTQEVTIKDLESEKSRA 413
Cdd:COG4913 319 DALREELDELEAQIRGNGGDRLEQL------EREIERLERELEERERRR---ARLEALLAALGLPLPASAEEFAALRAEA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 414 NERLCQLEEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRtqqeyyemeLKNLQNRLEGEV----AQLNEAHGKTLEEL 489
Cdd:COG4913 390 AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIAS---------LERRKSNIPARLlalrDALAEALGLDEAEL 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 490 ------------ARKHHMAIEAV-HS-------------------NASRDKIKLQTELEEQYKKEKLSLEEDKNQLQLEL 537
Cdd:COG4913 461 pfvgelievrpeEERWRGAIERVlGGfaltllvppehyaaalrwvNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 538 ESLKQALGDKLtsaNQEIGRLQDLVR-KSEQGLG------SAEGLISSLQ-----DSQERLQSELDLtkGRLKETKDALL 605
Cdd:COG4913 541 DFKPHPFRAWL---EAELGRRFDYVCvDSPEELRrhpraiTRAGQVKGNGtrhekDDRRRIRSRYVL--GFDNRAKLAAL 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 606 NVE-AELQQERHEHEQTLATMKEEEKLRVDRMAH--------DLEIKWTEnLRQECSKLRQELrlqheEDKKSAMSQLLQ 676
Cdd:COG4913 616 EAElAELEEELAEAEERLEALEAELDALQERREAlqrlaeysWDEIDVAS-AEREIAELEAEL-----ERLDASSDDLAA 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 677 LKEReknaaRDSWQKKVEDLLNQRHSLGEAlhksinnISLLKQNLElqlcqsqtslqqlqaQFTQERQRLTQELEELEEQ 756
Cdd:COG4913 690 LEEQ-----LEELEAELEELEEELDELKGE-------IGRLEKELE---------------QAEEELDELQDRLEAAEDL 742
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 757 HQQRHKSLKEAHVLafQTMEEEKEKEQRALETHLQQKHSAELQSLKDAHRESMEGFRVEMEQELQTLRFELEDEGK--AM 834
Cdd:COG4913 743 ARLELRALLEERFA--AALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEylAL 820
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568965737 835 LASLRSELNHQHAASI-DLLRHSHHQELAAAKMELERSIDISRRqskehmcRISDLQEELRH 895
Cdd:COG4913 821 LDRLEEDGLPEYEERFkELLNENSIEFVADLLSKLRRAIREIKE-------RIDPLNDSLKR 875
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
324-567 |
3.90e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 3.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 324 DKCQKLQMALATAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQEqasdlvlkashigmLQATQMTQEVTI 403
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA--------------LEQELAALEAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 404 KDLESEKSRANERLCQLEEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTQQeYYEMELKNLQNRLegevaqlnEAHG 483
Cdd:COG4942 86 AELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQ-YLKYLAPARREQA--------EELR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 484 KTLEELARKhhmaiEAVHSNASRDKIKLQTELEEQyKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVR 563
Cdd:COG4942 157 ADLAELAAL-----RAELEAERAELEALLAELEEE-RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
....
gi 568965737 564 KSEQ 567
Cdd:COG4942 231 RLEA 234
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
640-960 |
4.16e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 4.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 640 LEIKWTENLRQECSKLRQELRLQHEEDKKSAMSQLLQLKEREKNAARDSWQKKVEDLLNQRHSLGEALHKSINNISLLKQ 719
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 720 NLElqlcQSQTSLQQLQAQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRALETHLQQKHSAELQ 799
Cdd:COG1196 296 ELA----RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 800 SLKDAHRESMEGFRVEMEQELQTLRFELEDEGKAMLASLRSELNHQHAASIDLLRHSHHQELAAAKMELERSIDISRRQS 879
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 880 KEHMCRISDLQEELRHREHHITDLDKEVQHLHENINTLTKELELKGKEILRVRSESNQQMRLHEQDLNKRLEKELDVMTA 959
Cdd:COG1196 452 AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIG 531
|
.
gi 568965737 960 D 960
Cdd:COG1196 532 V 532
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
354-566 |
4.38e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 4.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 354 EMALLSKHKEVESELAAARE-RLQEQASDLVLKASHIGMLQ---ATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQS 429
Cdd:pfam17380 384 QMERQQKNERVRQELEAARKvKILEEERQRKIQQQKVEMEQiraEQEEARQREVRRLEEERAREMERVRLEEQERQQQVE 463
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 430 RTQSLDEEQKQQVLELEKKvneaKRTQQEYYEMELKNLQNRLEgevaqlneahgktleelARKHHMAIEavhsnaSRDKI 509
Cdd:pfam17380 464 RLRQQEEERKRKKLELEKE----KRDRKRAEEQRRKILEKELE-----------------ERKQAMIEE------ERKRK 516
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568965737 510 KLQTELEEQ----YKKEKLSLEEDKNQLQLELESLKQaLGDKLTSANQEIGRLQDLVRKSE 566
Cdd:pfam17380 517 LLEKEMEERqkaiYEEERRREAEEERRKQQEMEERRR-IQEQMRKATEERSRLEAMERERE 576
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
48-699 |
9.25e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.42 E-value: 9.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 48 SKKIAQLTKVIYALNTRNDEHDAAIQALKDAHEEEIQQILAETREKILLYKSKVTEELDLRRKIQVLEASLEDHMKMKQE 127
Cdd:pfam02463 263 EEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEK 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 128 ALTEFEAYKRRVEDMQLCAEAQHVQRIVTMSREVEEIRKKFEERLRSFGQLQVQFENDKQAALEDLRTTHRLEVQE-LLK 206
Cdd:pfam02463 343 ELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEdLLK 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 207 SQQNHSSSVKLGQEKAEGLHRMEVEALNNTVKELRLEKKQLIEEYE------GKLSKAQVFYERELDNLKRSQLFTAESL 280
Cdd:pfam02463 423 EEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKksedllKETQLVKLQEQLELLLSRQKLEERSQKE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 281 QASRDKEADLRKEFQGQEAILRKTIGKLKTELQ-MVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDDAKEGEMALLS 359
Cdd:pfam02463 503 SKARSGLKVLLALIKDGVGGRIISAHGRLGDLGvAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRL 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 360 KHKEVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVTIKDLES-EKSRANERLCQLEEERAFLQSRTQSLDEEQ 438
Cdd:pfam02463 583 LIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDtELTKLKESAKAKESGLRKGVSLEEGLAEKS 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 439 KQQV-LELEKKVNEAKRTQQEYYEMELKNLQNRLEGEVAQLNEAHGKTLEELARKHHMAIEAVHSNASRDKIKLQTELEE 517
Cdd:pfam02463 663 EVKAsLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLK 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 518 QYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVRKSEQglgsaEGLISSLQDSQERLQSELDLTKGRL 597
Cdd:pfam02463 743 QKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK-----EEKLKAQEEELRALEEELKEEAELL 817
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 598 KETKDALLNVEAELQQERHEHEQTLATMKEEEKLRVDRmahdLEIKWTENLRQECSKLRQELRLQHEEDKKSAMSQLLQL 677
Cdd:pfam02463 818 EEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEE----LERLEEEITKEELLQELLLKEEELEEQKLKDELESKEE 893
|
650 660
....*....|....*....|..
gi 568965737 678 KEREKNAARDSWQKKVEDLLNQ 699
Cdd:pfam02463 894 KEKEEKKELEEESQKLNLLEEK 915
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
69-608 |
9.30e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 9.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 69 DAAIQALKD--AHEEEIQQILAETREKILLYKSKVTEELDLRRKIQVLEASLEDHMKMKQEALTEFEAYKRRVEDMQLCA 146
Cdd:PRK03918 175 KRRIERLEKfiKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 147 EAQHvQRIVTMSREVEEIRKKFEERLRSFGQL-QVQFENDKQAALEDLRTTHRLEVQELLKSQQNHSSSVKLGQEKAEgl 225
Cdd:PRK03918 255 RKLE-EKIRELEERIEELKKEIEELEEKVKELkELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK-- 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 226 hrmEVEALNNTVKELRLEKKQLIEEYEgKLSKAQVFYERELDNLKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTI 305
Cdd:PRK03918 332 ---ELEEKEERLEELKKKLKELEKRLE-ELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEI 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 306 GKLKTELQMVQDEASSLldkcQKLQMALATAENNVQVLQKQLDDAKEGEM---------ALLSKHKEVESELAAARERLQ 376
Cdd:PRK03918 408 SKITARIGELKKEIKEL----KKAIEELKKAKGKCPVCGRELTEEHRKELleeytaelkRIEKELKEIEEKERKLRKELR 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 377 EQASDLVLKASHIGMLQATQMTQEVTIK----DLEsEKSRANERLCQLEEERAFLQSRTQSLDEEQKqQVLELEKKVNEA 452
Cdd:PRK03918 484 ELEKVLKKESELIKLKELAEQLKELEEKlkkyNLE-ELEKKAEEYEKLKEKLIKLKGEIKSLKKELE-KLEELKKKLAEL 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 453 KRTQQEyYEMELKNLQNRLEGEVAQLNEAHGKTLEELARKHHMAIEAVHSnasrdKIKLQTELEEQyKKEKLSLEEDKNQ 532
Cdd:PRK03918 562 EKKLDE-LEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDA-----EKELEREEKEL-KKLEEELDKAFEE 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 533 LQL---ELESLKQALGDKLTSANQE-IGRLQDLVRKSEQGLGSAEGLISSLQDSQERLQSELDLTKGRLKETKDALLNVE 608
Cdd:PRK03918 635 LAEtekRLEELRKELEELEKKYSEEeYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
274-449 |
1.04e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.36 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 274 LFTAESLQASRDKEADLRKEFQGQEAILRKT---IGKLKTELQMVQDEASSLLDKCQkLQMALATAENNVQVLQKQLDDA 350
Cdd:PRK11281 69 LALLDKIDRQKEETEQLKQQLAQAPAKLRQAqaeLEALKDDNDEETRETLSTLSLRQ-LESRLAQTLDQLQNAQNDLAEY 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 351 KEGEMALLSKHKEVESELAAARERLQE--------QASDLVLKASHIGMLQATQ-------------MTQEVTIKDL-ES 408
Cdd:PRK11281 148 NSQLVSLQTQPERAQAALYANSQRLQQirnllkggKVGGKALRPSQRVLLQAEQallnaqndlqrksLEGNTQLQDLlQK 227
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568965737 409 EKSRANERLCQLEEERAFLQS------RTQSldEEQKQQVLELEKKV 449
Cdd:PRK11281 228 QRDYLTARIQRLEHQLQLLQEainskrLTLS--EKTVQEAQSQDEAA 272
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
232-471 |
3.12e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 3.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 232 ALNNTVKELRLEKKQL---IEEYEGKLSKAQVFYERELDNLKRSQLFTAESLQASRDKEADLrKEFQGQEAILRKTIGKL 308
Cdd:COG4942 17 AQADAAAEAEAELEQLqqeIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQEL-AALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 309 KTELQMVQDEASSLLDKCQKLQ-----MALATAENNVQVLQKQ--LDDAKEGEMALLSKHKEVESELAAARERLQEQASD 381
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGrqpplALLLSPEDFLDAVRRLqyLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 382 LvlkashigmlQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYE 461
Cdd:COG4942 176 L----------EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
250
....*....|
gi 568965737 462 MELKNLQNRL 471
Cdd:COG4942 246 AGFAALKGKL 255
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
72-673 |
3.68e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 3.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 72 IQALKDAHEEEIQQILAETREKillykskVTEELDLRRKIQVLEASLEDHMKMKQEaLTEFEAYKRRVEDMQLCAEAqhv 151
Cdd:PRK03918 191 IEELIKEKEKELEEVLREINEI-------SSELPELREELEKLEKEVKELEELKEE-IEELEKELESLEGSKRKLEE--- 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 152 qRIVTMSREVEEIRKKFEERLRSFGQL-QVQFENDKQAALEDLRTTHRLEVQELLKSQQNHSSSVKLGQEKAEglhrmEV 230
Cdd:PRK03918 260 -KIRELEERIEELKKEIEELEEKVKELkELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK-----EL 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 231 EALNNTVKELRLEKKQLIEEYEgKLSKAQVFYERELDNLKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTIGKLKT 310
Cdd:PRK03918 334 EEKEERLEELKKKLKELEKRLE-ELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITA 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 311 ELQMVQDEASSLldkcQKLQMALATAENNVQVLQKQLDDAKEGEmaLLSKHKEVESELAAARERLQEQASDLVLKASHIG 390
Cdd:PRK03918 413 RIGELKKEIKEL----KKAIEELKKAKGKCPVCGRELTEEHRKE--LLEEYTAELKRIEKELKEIEEKERKLRKELRELE 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 391 MLQATqmtqevtikdlESEKSRANERLCQLEEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRtQQEYYEMELKNLqNR 470
Cdd:PRK03918 487 KVLKK-----------ESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKG-EIKSLKKELEKL-EE 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 471 LEGEVAQLNEAHGKTLEELARKHHMAIEAVHSNASRDKIKLQtELEEQYKkEKLSLEEDKNQLQLELESLKQaLGDKLTS 550
Cdd:PRK03918 554 LKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLK-ELEPFYN-EYLELKDAEKELEREEKELKK-LEEELDK 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 551 ANQEIGRLQDLVRKSEQGLGSAEGLISslQDSQERLqseldltKGRLKETKDALLNVEAELQQERHEHEQTLATMKEEEK 630
Cdd:PRK03918 631 AFEELAETEKRLEELRKELEELEKKYS--EEEYEEL-------REEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 568965737 631 LRVDRMAHDLEIKWTENLRQECSKLRQELRLQHEEDKKSAMSQ 673
Cdd:PRK03918 702 ELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSK 744
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
98-923 |
3.89e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 98 KSKVTEELD-LRRKIQVLEASLE------DHMKMKQEALTEFEAYKRRVEDMQLCAeaqHVQRIVTMSREVEEIRKKFEE 170
Cdd:TIGR02169 172 KEKALEELEeVEENIERLDLIIDekrqqlERLRREREKAERYQALLKEKREYEGYE---LLKEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 171 RLRSFGQLQVQFE--NDKQAALEDLRTTHRLEVQELLKSQQNHSSSvKLGQEKAE-GLHRMEVEALNNTVKELRLEKKQL 247
Cdd:TIGR02169 249 LEEELEKLTEEISelEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE-KIGELEAEiASLERSIAEKERELEDAEERLAKL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 248 IEEYEGKLSKAQVFyERELDNLKRSQLFTAESLQASRDKEADLRKEFQGQE---AILRKTIGKLKTELQMVQDEASSLLD 324
Cdd:TIGR02169 328 EAEIDKLLAEIEEL-EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDkefAETRDELKDYREKLEKLKREINELKR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 325 KCQKLQMALATAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQEQASDLvlkashigmlqatqmtqevtiK 404
Cdd:TIGR02169 407 ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL---------------------S 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 405 DLESEKSRANERLCQLEEERaflqsrtqsldEEQKQQVLELEKKVNEAKRTQQEYY--EMELKNLQNRLEGEVAQLNEah 482
Cdd:TIGR02169 466 KYEQELYDLKEEYDRVEKEL-----------SKLQRELAEAEAQARASEERVRGGRavEEVLKASIQGVHGTVAQLGS-- 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 483 gktleeLARKHHMAIEAVHSNASrDKIKLQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGDK-LTSANQEIGRLQDL 561
Cdd:TIGR02169 533 ------VGERYATAIEVAAGNRL-NNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLsILSEDGVIGFAVDL 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 562 VRKSEQglgSAEGLISSLQDS--QERLQSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATMKEEEKLRVDRMAHD 639
Cdd:TIGR02169 606 VEFDPK---YEPAFKYVFGDTlvVEDIEAARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRER 682
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 640 LEikwteNLRQECSKLRQELRLQheedkKSAMSQLLQLKEREKNAARDSwQKKVEDLLNQRHSLGEALHKSINNISLLKQ 719
Cdd:TIGR02169 683 LE-----GLKRELSSLQSELRRI-----ENRLDELSQELSDASRKIGEI-EKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 720 NLElqlcqsqtslqqlqaqftQERQRLTQELEELEEQHQQRHKslkeahvlafqtMEEEKEKEQRALETHLQQKHSAELQ 799
Cdd:TIGR02169 752 EIE------------------NVKSELKELEARIEELEEDLHK------------LEEALNDLEARLSHSRIPEIQAELS 801
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 800 SLKDAHREsMEGFRVEMEQELQ--TLRFELEDEGKAMLASLRSELNHQHAAsidllRHSHHQELAAAKMELERSIDISRR 877
Cdd:TIGR02169 802 KLEEEVSR-IEARLREIEQKLNrlTLEKEYLEKEIQELQEQRIDLKEQIKS-----IEKEIENLNGKKEELEEELEELEA 875
|
810 820 830 840
....*....|....*....|....*....|....*....|....*.
gi 568965737 878 QSKEHMCRISDLQEELRHREHHITDLDKEVQHLHENINTLTKELEL 923
Cdd:TIGR02169 876 ALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE 921
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
305-698 |
5.60e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 40.96 E-value: 5.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 305 IGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDdAKEGEMALLskhkevESELAAARERLQEQASDLVL 384
Cdd:pfam10174 291 IDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLT-AKEQRAAIL------QTEVDALRLRLEEKESFLNK 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 385 KASHIGMLQATQMTQEVTIKDLEseksranERLCQLEEERAFLQSRTQSLDEeqkqQVLELEKKVNEAKRTQQEyyemel 464
Cdd:pfam10174 364 KTKQLQDLTEEKSTLAGEIRDLK-------DMLDVKERKINVLQKKIENLQE----QLRDKDKQLAGLKERVKS------ 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 465 knlqnrLEGEVAQLNEAHGkTLEELARKHHMAIEAVHSNASRDKIKLQTELEeQYKKEKLSLEEDKNQLQLELESLKQAL 544
Cdd:pfam10174 427 ------LQTDSSNTDTALT-TLEEALSEKERIIERLKEQREREDRERLEELE-SLKKENKDLKEKVSALQPELTEKESSL 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 545 GDKLTSANQeigrLQDLVRKSEQGLGSAEGLISSLQDSQERLQSEL------DLTKGRLKETKDALLNVEAELQQERHEH 618
Cdd:pfam10174 499 IDLKEHASS----LASSGLKKDSKLKSLEIAVEQKKEECSKLENQLkkahnaEEAVRTNPEINDRIRLLEQEVARYKEES 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 619 -------EQTLATMK--EEEKLRVDRMAHDLEIKWTENLRQECSKLRQELRLQHEEDKKSAMsQLLQLKEREKNAARDSW 689
Cdd:pfam10174 575 gkaqaevERLLGILRevENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQ-LLEEARRREDNLADNSQ 653
|
....*....
gi 568965737 690 QKKVEDLLN 698
Cdd:pfam10174 654 QLQLEELMG 662
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
352-713 |
6.28e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.86 E-value: 6.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 352 EGEMALLSKHKEVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQSRT 431
Cdd:pfam05483 205 QAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENL 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 432 QSLDEEQKQQVLELE------KKVNEAKRTQQEYYEMELKNLQNRLEGEVAQLNEAHGK----------------TLEEL 489
Cdd:pfam05483 285 KELIEKKDHLTKELEdikmslQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAkaahsfvvtefeattcSLEEL 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 490 ARKHHMAIEavhsnASRDKIKLQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGD--KLTSANQEIGRLQDLVRKSEQ 567
Cdd:pfam05483 365 LRTEQQRLE-----KNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEdeKLLDEKKQFEKIAEELKGKEQ 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 568 GLgsaeglisslqdsqerlqseLDLTKGRLKETKDALLNVEAELQQERHEHEQT--LATMKEEEKLRVDRMAHDLEIKWT 645
Cdd:pfam05483 440 EL--------------------IFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVedLKTELEKEKLKNIELTAHCDKLLL 499
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568965737 646 EN--LRQECSKLRQELRLQHEE------DKKSAMSQLLQLKEREKNaARDSWQKKVEDLLNQRHSLGEALHKSINN 713
Cdd:pfam05483 500 ENkeLTQEASDMTLELKKHQEDiinckkQEERMLKQIENLEEKEMN-LRDELESVREEFIQKGDEVKCKLDKSEEN 574
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
737-1037 |
6.36e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.81 E-value: 6.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 737 AQFTQERQRLTQELEELEEQHQQRHKSLkEAHVLAFQTMEEEKEKEQRALETHLQQKHSAELQ------SLKDAHR--ES 808
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKL-EELRLEVSELEEEIEELQKELYALANEISRLEQQkqilreRLANLERqlEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 809 MEGFRVEMEQELQTLRFELED--EGKAMLASLRSELNHQHAASIDLLrhshhQELAAAKMELERSIDISRRQSKEHMCRI 886
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAEleEKLEELKEELESLEAELEELEAEL-----EELESRLEELEEQLETLRSKVAQLELQI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 887 SDLQEELRHREHHITDLDKEVQHLHENINTLTKELELKGKEILRVRSESNQQMRLHEQDLNKRLEKELDVMTADHLREKN 966
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568965737 967 IMRADFNKTNELlkeinAALQVSLEDMEEKYlmrESRPEDIQMIAELKSLITERDQVIKKLIQKKKNDKSA 1037
Cdd:TIGR02168 476 ALDAAERELAQL-----QARLDSLERLQENL---EGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAA 538
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
286-598 |
6.80e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.39 E-value: 6.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 286 KEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLL---------DKCQKLQMALATA--ENNVQVLQKQLDDAKEge 354
Cdd:COG3206 101 DKLNLDEDPLGEEASREAAIERLRKNLTVEPVKGSNVIeisytspdpELAAAVANALAEAylEQNLELRREEARKALE-- 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 355 mallskhkEVESELAAARERLQEQASDLV-LKASHIGMLQATQMTQevtikdLESEKSRANERLCQLEEERAFLQSRTQS 433
Cdd:COG3206 179 --------FLEEQLPELRKELEEAEAALEeFRQKNGLVDLSEEAKL------LLQQLSELESQLAEARAELAEAEARLAA 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 434 LDEEqkqqvleLEKKVNEAKRTQQEYYEMELKNLQNRLEGEVAQLneahgktLEELARKHHMAIEAvhsnasRDKIK-LQ 512
Cdd:COG3206 245 LRAQ-------LGSGPDALPELLQSPVIQQLRAQLAELEAELAEL-------SARYTPNHPDVIAL------RAQIAaLR 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 513 TELEEQYKKEKLSLEEDKNQLQLELESLKQALgDKLTSANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERLQSELDL 592
Cdd:COG3206 305 AQLQQEAQRILASLEAELEALQAREASLQAQL-AQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEAL 383
|
....*.
gi 568965737 593 TKGRLK 598
Cdd:COG3206 384 TVGNVR 389
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
106-338 |
6.93e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 6.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 106 DLRRKIQVLEASLEDHMKMKQEALTEFEAYKRRVEDMQlcaeaqhvQRIVTMSREVEEIRKKFEERLRSFGQLQVQFEND 185
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA--------RRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 186 KQAALEDLRTTHRLEVQ---ELLKSQQNHSSSVKLGQekaegLHRMEVEALNNTVKELRLEKKQLIEEyegklskaqvfy 262
Cdd:COG4942 103 KEELAELLRALYRLGRQpplALLLSPEDFLDAVRRLQ-----YLKYLAPARREQAEELRADLAELAAL------------ 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568965737 263 ERELDNLKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAEN 338
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
229-463 |
7.01e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.20 E-value: 7.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 229 EVEALNNTVKELRLEKKQLieeyEGKLSKAQvfyeRELDNLKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTIGKL 308
Cdd:COG3883 17 QIQAKQKELSELQAELEAA----QAELDALQ----AELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 309 KTELQMVQ--DEASSLLDkcqklqmALATAENNVQVLQKQ--LDDAKEGEMALLSKHKEVESELAAARERLQEQASDLvl 384
Cdd:COG3883 89 GERARALYrsGGSVSYLD-------VLLGSESFSDFLDRLsaLSKIADADADLLEELKADKAELEAKKAELEAKLAEL-- 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568965737 385 kashigmlQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYEME 463
Cdd:COG3883 160 --------EALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
198-591 |
7.09e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 7.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 198 RLEVQELLKSQQNHSSSVKLGQEKAEGLHRMEVEALNNTVKELRLEKKQLIEEYEGKLSKAQ---VFYERELDNLKRSQL 274
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEaelAELPERLEELEERLE 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 275 FTAESLQASRDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDDAkEGE 354
Cdd:COG4717 157 ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL-ENE 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 355 MALLSKHKEVESE-----LAAARERLQEQASDLVLKASHIG----------MLQATQMTQEVTIKDLESEKSRANERLCQ 419
Cdd:COG4717 236 LEAAALEERLKEArllllIAAALLALLGLGGSLLSLILTIAgvlflvlgllALLFLLLAREKASLGKEAEELQALPALEE 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 420 LEEERAFLQSRTQSLDEE-QKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEGEVAQLNEAHGKTLEELARKHHMAIE 498
Cdd:COG4717 316 LEEEELEELLAALGLPPDlSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAE 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 499 AVHSNASRdKIKLQTELEEQYKKEKLSLE-EDKNQLQLELESLKQAL---GDKLTSANQEIGRLQDLVRKSEQglgsaEG 574
Cdd:COG4717 396 EYQELKEE-LEELEEQLEELLGELEELLEaLDEEELEEELEELEEELeelEEELEELREELAELEAELEQLEE-----DG 469
|
410
....*....|....*..
gi 568965737 575 LISSLQDSQERLQSELD 591
Cdd:COG4717 470 ELAELLQELEELKAELR 486
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
143-722 |
7.15e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.54 E-value: 7.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 143 QLCAEAQHVQ-RIVTMSREVEEIRKKFEERLRSFGQLQVQFENDKQAAledlrTTHRLEVQELLKSQQNHSSSVKLGQEK 221
Cdd:pfam01576 54 ELCAEAEEMRaRLAARKQELEEILHELESRLEEEEERSQQLQNEKKKM-----QQHIQDLEEQLDEEEAARQKLQLEKVT 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 222 AEG-LHRMEVEALNNTVKELRLEK-KQLIEEYEGKLSKAQVFYE---RELDNLKRSQLFTAESLQASRDKEADLRKEfqg 296
Cdd:pfam01576 129 TEAkIKKLEEDILLLEDQNSKLSKeRKLLEERISEFTSNLAEEEekaKSLSKLKNKHEAMISDLEERLKKEEKGRQE--- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 297 qeaiLRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARErlq 376
Cdd:pfam01576 206 ----LEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQE--- 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 377 eqasdlvlkashigmlqatqmtqevtikDLESEK---SRANERLCQLEEERAFLQSRTQ-SLDEEQKQQVLelekkvnEA 452
Cdd:pfam01576 279 ----------------------------DLESERaarNKAEKQRRDLGEELEALKTELEdTLDTTAAQQEL-------RS 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 453 KRtqqeyyEMELKNLQNRLEGEVaqlnEAHGKTLEELARKHHMAIEAVH---SNASRDKIKLQteleeqykKEKLSLEED 529
Cdd:pfam01576 324 KR------EQEVTELKKALEEET----RSHEAQLQEMRQKHTQALEELTeqlEQAKRNKANLE--------KAKQALESE 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 530 KNQLQLELESLKQALGDKLTSANQEIGRLQDLVRKSEQGlgsaEGLISSLQDSQERLQSELDLTKGRLKETKDALLNVEA 609
Cdd:pfam01576 386 NAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSES----ERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSK 461
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 610 ELQQERHEHEQTLATMKEEEKLRvdrmahdleIKWTENLRQ-ECSKLRQELRLQHEEDKKSAMSQLLQlkerEKNAARDS 688
Cdd:pfam01576 462 DVSSLESQLQDTQELLQEETRQK---------LNLSTRLRQlEDERNSLQEQLEEEEEAKRNVERQLS----TLQAQLSD 528
|
570 580 590
....*....|....*....|....*....|....
gi 568965737 689 WQKKVEDLLNQRHSLGEALHKSINNISLLKQNLE 722
Cdd:pfam01576 529 MKKKLEEDAGTLEALEEGKKRLQRELEALTQQLE 562
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
181-553 |
8.19e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 8.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 181 QFENDKQAALEDLRTTH-RLEVQELLKSqqnhsssvklgqEKAEGLHRMEVEALN-NTVKELRLEKkqliEEYEGK-LSK 257
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEeNIERLDLIID------------EKRQQLERLRREREKaERYQALLKEK----REYEGYeLLK 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 258 AQVFYERELDNLkRSQLFTAESLQASRDKEA-DLRKEFQGQEAILRKTIGKLKtelQMVQDEASSLLDKCQKLQMALATA 336
Cdd:TIGR02169 231 EKEALERQKEAI-ERQLASLEEELEKLTEEIsELEKRLEEIEQLLEELNKKIK---DLGEEEQLRVKEKIGELEAEIASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 337 ENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVTIKDLES-------E 409
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKefaetrdE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 410 KSRANERLCQLEEERAFLQSRTQSLDEEQKQQvlelekkvneakrtqqeyyEMELKNLQNRLEGEVAQLNEahgktLEEL 489
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRL-------------------SEELADLNAAIAGIEAKINE-----LEEE 442
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568965737 490 ARKHHMAIEAVHSNASRDKIKLqteleEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQ 553
Cdd:TIGR02169 443 KEDKALEIKKQEWKLEQLAADL-----SKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
419-590 |
8.26e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 8.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 419 QLEEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTQQEYY---------EMELKNLQNRLE------GEVAQLNEAHG 483
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAelqeeleelEEELEELEAELEelreelEKLEKLLQLLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 484 KTLEELARKHHMAIEAVHSNASRDKIKLQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVR 563
Cdd:COG4717 130 LYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLA 209
|
170 180
....*....|....*....|....*..
gi 568965737 564 KSEQGLGSAEGLISSLQDSQERLQSEL 590
Cdd:COG4717 210 ELEEELEEAQEELEELEEELEQLENEL 236
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
766-1040 |
8.30e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.31 E-value: 8.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 766 EAHVLAFQTMEEEKEKEQRALETHLQQKHSAElqslkdAHRESMEGFRVEMEQELQTLRFELEDEGKAMLASLRSELNHQ 845
Cdd:COG1196 228 ELLLLKLRELEAELEELEAELEELEAELEELE------AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 846 HAASIDLLRhshHQELAAAKMELERSIDISRRQSKEHMCRISDLQEELRHREHHITDLDKEVQHLHENINTLTKELELKG 925
Cdd:COG1196 302 QDIARLEER---RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568965737 926 KEILRVRSESNQQMRLHEQDLNKRLEKELDVMTADHLREKNImRADFNKTNELLKEINAALQVSLEDMEEKYLMRESRPE 1005
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE-EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270
....*....|....*....|....*....|....*
gi 568965737 1006 DIQMIAELKSLITERDQVIKKLIQKKKNDKSAANR 1040
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| |
