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Conserved domains on  [gi|568942156|ref|XP_006506326|]
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uncharacterized protein C12orf60 homolog isoform X1 [Mus musculus]

Protein Classification

SMCO3 family protein( domain architecture ID 10633340)

SMCO3 family protein is a DUF4533 domain-containing protein; similar to Homo sapiens single-pass membrane and coiled-coil domain-containing protein 3 (SMCO3)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF4533 pfam15047
Protein of unknown function (DUF4533); This family of proteins is functionally uncharacterized. ...
8-235 4.62e-107

Protein of unknown function (DUF4533); This family of proteins is functionally uncharacterized. This family of proteins is found in mammals. This family includes two human proteins: C12orf60 and C12orf69.


:

Pssm-ID: 464469  Cd Length: 225  Bit Score: 308.20  E-value: 4.62e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568942156    8 DKERLIQAAKLFFFHIRDLVSFINRFVELFNLTMKTQILPMNLNEESCIKDFFEQMIRNFKEMQLMVDGKHKQMQKEPLC 87
Cdd:pfam15047   1 DKERLIQAAKTFFDHIQDLFSFTNTLIELFNSHMGTQILLIAVKEDSNIKENFEQMIKIFKEMQSVVDKKDKEMQKEPLY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568942156   88 SKVLTAMTSAVEKCATI-APHHTAEDMLRNIQTSGAALVLKTSHVLVNLETSLSLLMQFPIMGLRLSDLYREETKEQsda 166
Cdd:pfam15047  81 SKIATAKESEVEKIAIVkELQSSAKGEFKNVATPVAVSLLKSSNILAQLESSLSLLMGFPIMNLGLSDFYREDTKEQ--- 157
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568942156  167 tSDATTSEKNKSPECPKATTEETLRKLQDVLSPENAHTPVEAAADELEQFVKSMEITLQVLQKSIKTME 235
Cdd:pfam15047 158 -SDATTSEKSRSPGPSKTTTVDTLKKLQGALEREQAKNTIESAADHLEEFVKAMEPYLEALQKAIKTME 225
 
Name Accession Description Interval E-value
DUF4533 pfam15047
Protein of unknown function (DUF4533); This family of proteins is functionally uncharacterized. ...
8-235 4.62e-107

Protein of unknown function (DUF4533); This family of proteins is functionally uncharacterized. This family of proteins is found in mammals. This family includes two human proteins: C12orf60 and C12orf69.


Pssm-ID: 464469  Cd Length: 225  Bit Score: 308.20  E-value: 4.62e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568942156    8 DKERLIQAAKLFFFHIRDLVSFINRFVELFNLTMKTQILPMNLNEESCIKDFFEQMIRNFKEMQLMVDGKHKQMQKEPLC 87
Cdd:pfam15047   1 DKERLIQAAKTFFDHIQDLFSFTNTLIELFNSHMGTQILLIAVKEDSNIKENFEQMIKIFKEMQSVVDKKDKEMQKEPLY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568942156   88 SKVLTAMTSAVEKCATI-APHHTAEDMLRNIQTSGAALVLKTSHVLVNLETSLSLLMQFPIMGLRLSDLYREETKEQsda 166
Cdd:pfam15047  81 SKIATAKESEVEKIAIVkELQSSAKGEFKNVATPVAVSLLKSSNILAQLESSLSLLMGFPIMNLGLSDFYREDTKEQ--- 157
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568942156  167 tSDATTSEKNKSPECPKATTEETLRKLQDVLSPENAHTPVEAAADELEQFVKSMEITLQVLQKSIKTME 235
Cdd:pfam15047 158 -SDATTSEKSRSPGPSKTTTVDTLKKLQGALEREQAKNTIESAADHLEEFVKAMEPYLEALQKAIKTME 225
 
Name Accession Description Interval E-value
DUF4533 pfam15047
Protein of unknown function (DUF4533); This family of proteins is functionally uncharacterized. ...
8-235 4.62e-107

Protein of unknown function (DUF4533); This family of proteins is functionally uncharacterized. This family of proteins is found in mammals. This family includes two human proteins: C12orf60 and C12orf69.


Pssm-ID: 464469  Cd Length: 225  Bit Score: 308.20  E-value: 4.62e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568942156    8 DKERLIQAAKLFFFHIRDLVSFINRFVELFNLTMKTQILPMNLNEESCIKDFFEQMIRNFKEMQLMVDGKHKQMQKEPLC 87
Cdd:pfam15047   1 DKERLIQAAKTFFDHIQDLFSFTNTLIELFNSHMGTQILLIAVKEDSNIKENFEQMIKIFKEMQSVVDKKDKEMQKEPLY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568942156   88 SKVLTAMTSAVEKCATI-APHHTAEDMLRNIQTSGAALVLKTSHVLVNLETSLSLLMQFPIMGLRLSDLYREETKEQsda 166
Cdd:pfam15047  81 SKIATAKESEVEKIAIVkELQSSAKGEFKNVATPVAVSLLKSSNILAQLESSLSLLMGFPIMNLGLSDFYREDTKEQ--- 157
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568942156  167 tSDATTSEKNKSPECPKATTEETLRKLQDVLSPENAHTPVEAAADELEQFVKSMEITLQVLQKSIKTME 235
Cdd:pfam15047 158 -SDATTSEKSRSPGPSKTTTVDTLKKLQGALEREQAKNTIESAADHLEEFVKAMEPYLEALQKAIKTME 225
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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