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Conserved domains on  [gi|568916928|ref|XP_006499532|]
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leucine-rich repeat-containing protein 55 isoform X1 [Mus musculus]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 11469232)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
60-237 8.25e-16

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 77.28  E-value: 8.25e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568916928  60 QVVDCSNQRLFSVPPDLpmdtRNLSLAHNRIAAVPP--GYLTcymELRVLDLRNNSLMELPPGLFlHAKRLAHLDLSYNN 137
Cdd:COG4886   99 TELDLSGNEELSNLTNL----ESLDLSGNQLTDLPEelANLT---NLKELDLSNNQLTDLPEPLG-NLTNLKSLDLSNNQ 170

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568916928 138 LSHVPADmFREAHGLVHIDLSHNPwLRRVhPQAFQGLVHLRDLDLSYGGLAFLSlEALEGLPGLVTLQIGGN-----PWV 212
Cdd:COG4886  171 LTDLPEE-LGNLTNLKELDLSNNQ-ITDL-PEPLGNLTNLEELDLSGNQLTDLP-EPLANLTNLETLDLSNNqltdlPEL 246

                        170       180
                 ....*....|....*....|....*...
gi 568916928 213 CGCTmepLLKWL---RNRIQRCTADSQL 237
Cdd:COG4886  247 GNLT---NLEELdlsNNQLTDLPPLANL 271
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
60-237 8.25e-16

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 77.28  E-value: 8.25e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568916928  60 QVVDCSNQRLFSVPPDLpmdtRNLSLAHNRIAAVPP--GYLTcymELRVLDLRNNSLMELPPGLFlHAKRLAHLDLSYNN 137
Cdd:COG4886   99 TELDLSGNEELSNLTNL----ESLDLSGNQLTDLPEelANLT---NLKELDLSNNQLTDLPEPLG-NLTNLKSLDLSNNQ 170

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568916928 138 LSHVPADmFREAHGLVHIDLSHNPwLRRVhPQAFQGLVHLRDLDLSYGGLAFLSlEALEGLPGLVTLQIGGN-----PWV 212
Cdd:COG4886  171 LTDLPEE-LGNLTNLKELDLSNNQ-ITDL-PEPLGNLTNLEELDLSGNQLTDLP-EPLANLTNLETLDLSNNqltdlPEL 246

                        170       180
                 ....*....|....*....|....*...
gi 568916928 213 CGCTmepLLKWL---RNRIQRCTADSQL 237
Cdd:COG4886  247 GNLT---NLEELdlsNNQLTDLPPLANL 271
LRR_8 pfam13855
Leucine rich repeat;
103-161 1.69e-12

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 61.39  E-value: 1.69e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 568916928  103 ELRVLDLRNNSLMELPPGLFLHAKRLAHLDLSYNNLSHVPADMFREAHGLVHIDLSHNP 161
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNR 60
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 60-160 2.69e-08

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 55.24  E-value: 2.69e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568916928  60 QVVDCSNQRLFSVPPDLPMDTR--NLSLAHNRIAAVPPGYLTCYMELRVLDLRNNSLMELPPGLFLHAKRLAHLDLSYNN 137
Cdd:PLN00113 455 QMLSLARNKFFGGLPDSFGSKRleNLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534

                         90       100
                 ....*....|....*....|....
gi 568916928 138 LS-HVPADmFREAHGLVHIDLSHN 160
Cdd:PLN00113 535 LSgQIPAS-FSEMPVLSQLDLSQN 557
LRRNT smart00013
Leucine rich repeat N-terminal domain;
51-82 3.94e-06

Leucine rich repeat N-terminal domain;


Pssm-ID: 214470 [Multi-domain]  Cd Length: 33  Bit Score: 42.69  E-value: 3.94e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 568916928    51 CPVLCTCRNQVVDCSNQRLFSVPPDLPMDTRN 82
Cdd:smart00013   2 CPAPCNCSGTAVDCSGRGLTEVPLDLPPDTTL 33
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 65-161 1.26e-04

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 42.47  E-value: 1.26e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568916928  65 SNQRLfsvPPDLPM--DTRNL-SLAHNriaavppgyltcymeLRVLDLRNNSLMELPPglFLHAKRLAHLDLSYNNLSHV 141
Cdd:cd21340   98 ENQRL---PPGEKLtfDPRSLaALSNS---------------LRVLNISGNNIDSLEP--LAPLRNLEQLDASNNQISDL 157

                         90       100
                 ....*....|....*....|..
gi 568916928 142 P--ADMFREAHGLVHIDLSHNP 161
Cdd:cd21340  158 EelLDLLSSWPSLRELDLTGNP 179
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
60-237 8.25e-16

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 77.28  E-value: 8.25e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568916928  60 QVVDCSNQRLFSVPPDLpmdtRNLSLAHNRIAAVPP--GYLTcymELRVLDLRNNSLMELPPGLFlHAKRLAHLDLSYNN 137
Cdd:COG4886   99 TELDLSGNEELSNLTNL----ESLDLSGNQLTDLPEelANLT---NLKELDLSNNQLTDLPEPLG-NLTNLKSLDLSNNQ 170

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568916928 138 LSHVPADmFREAHGLVHIDLSHNPwLRRVhPQAFQGLVHLRDLDLSYGGLAFLSlEALEGLPGLVTLQIGGN-----PWV 212
Cdd:COG4886  171 LTDLPEE-LGNLTNLKELDLSNNQ-ITDL-PEPLGNLTNLEELDLSGNQLTDLP-EPLANLTNLETLDLSNNqltdlPEL 246

                        170       180
                 ....*....|....*....|....*...
gi 568916928 213 CGCTmepLLKWL---RNRIQRCTADSQL 237
Cdd:COG4886  247 GNLT---NLEELdlsNNQLTDLPPLANL 271
LRR_8 pfam13855
Leucine rich repeat;
103-161 1.69e-12

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 61.39  E-value: 1.69e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 568916928  103 ELRVLDLRNNSLMELPPGLFLHAKRLAHLDLSYNNLSHVPADMFREAHGLVHIDLSHNP 161
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNR 60
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 60-160 2.69e-08

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 55.24  E-value: 2.69e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568916928  60 QVVDCSNQRLFSVPPDLPMDTR--NLSLAHNRIAAVPPGYLTCYMELRVLDLRNNSLMELPPGLFLHAKRLAHLDLSYNN 137
Cdd:PLN00113 455 QMLSLARNKFFGGLPDSFGSKRleNLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534

                         90       100
                 ....*....|....*....|....
gi 568916928 138 LS-HVPADmFREAHGLVHIDLSHN 160
Cdd:PLN00113 535 LSgQIPAS-FSEMPVLSQLDLSQN 557
LRR_8 pfam13855
Leucine rich repeat;
151-210 6.04e-08

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 48.67  E-value: 6.04e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 568916928  151 GLVHIDLSHNPwLRRVHPQAFQGLVHLRDLDLSYGGLAFLSLEALEGLPGLVTLQIGGNP 210
Cdd:pfam13855   2 NLRSLDLSNNR-LTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNR 60
LRR_8 pfam13855
Leucine rich repeat;
81-138 6.16e-08

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 48.67  E-value: 6.16e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 568916928   81 RNLSLAHNRIAAVPPGYLTCYMELRVLDLRNNSLMELPPGLFLHAKRLAHLDLSYNNL 138
Cdd:pfam13855   4 RSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
52-237 2.82e-07

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 51.47  E-value: 2.82e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568916928  52 PVLCTCRN-QVVDCSNQRLFSVPPDLPMDT--RNLSLAHNRIAAVPP-GYLTcymELRVLDLRNNSLMELPPGLFLhaKR 127
Cdd:COG4886  199 EPLGNLTNlEELDLSGNQLTDLPEPLANLTnlETLDLSNNQLTDLPElGNLT---NLEELDLSNNQLTDLPPLANL--TN 273

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568916928 128 LAHLDLSYNNLSHVPADMFREAHGLVHIDLSHNPWLRRVHPQAFQGLVHLRDLDLSYGGLAFLSLEALEGLPGLVTLQIG 207
Cdd:COG4886  274 LKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLL 353

                        170       180       190
                 ....*....|....*....|....*....|
gi 568916928 208 GNPWVCGCTMEPLLKWLRNRIQRCTADSQL 237
Cdd:COG4886  354 LLLNLLSLLLTLLLTLGLLGLLEATLLTLA 383
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
60-165 8.44e-07

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 50.47  E-value: 8.44e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568916928  60 QVVDCSNQRLFSVPPDLPMDTRNLSLAHNRIAAVPPgylTCYMELRVLDLRNNSLMELPPGLflhAKRLAHLDLSYNNLS 139
Cdd:PRK15370 328 KTLEAGENALTSLPASLPPELQVLDVSKNQITVLPE---TLPPTITTLDVSRNALTNLPENL---PAALQIMQASRNNLV 401

                         90       100
                 ....*....|....*....|....*....
gi 568916928 140 HVPADM--FR-EAHGLVHIDLSHNPWLRR 165
Cdd:PRK15370 402 RLPESLphFRgEGPQPTRIIVEYNPFSER 430
LRRNT smart00013
Leucine rich repeat N-terminal domain;
51-82 3.94e-06

Leucine rich repeat N-terminal domain;


Pssm-ID: 214470 [Multi-domain]  Cd Length: 33  Bit Score: 42.69  E-value: 3.94e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 568916928    51 CPVLCTCRNQVVDCSNQRLFSVPPDLPMDTRN 82
Cdd:smart00013   2 CPAPCNCSGTAVDCSGRGLTEVPLDLPPDTTL 33
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
49-145 4.73e-06

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 48.15  E-value: 4.73e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568916928  49 TSCPVLCTCRNQVVDCSNQRLFSVPPDLPMDTRNLSLAHNRIAAVPPgylTCYMELRVLDLRNNSLMELPPGLflhAKRL 128
Cdd:PRK15370 233 TSIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKISCLPE---NLPEELRYLSVYDNSIRTLPAHL---PSGI 306

                         90
                 ....*....|....*..
gi 568916928 129 AHLDLSYNNLSHVPADM 145
Cdd:PRK15370 307 THLNVQSNSLTALPETL 323
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 58-160 1.45e-05

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 46.76  E-value: 1.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568916928  58 RNQVVDCSNQRLFSVPPDLPMDtrnlsLAHNRIAAVPPGYLTCYMELRVLDLRNNSLMELPPGLFLHAKRLAHLDLSYNN 137
Cdd:PLN00113 484 RNQFSGAVPRKLGSLSELMQLK-----LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558

                         90       100
                 ....*....|....*....|....
gi 568916928 138 LS-HVPADMFREaHGLVHIDLSHN 160
Cdd:PLN00113 559 LSgEIPKNLGNV-ESLVQVNISHN 581
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 65-161 1.26e-04

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 42.47  E-value: 1.26e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568916928  65 SNQRLfsvPPDLPM--DTRNL-SLAHNriaavppgyltcymeLRVLDLRNNSLMELPPglFLHAKRLAHLDLSYNNLSHV 141
Cdd:cd21340   98 ENQRL---PPGEKLtfDPRSLaALSNS---------------LRVLNISGNNIDSLEP--LAPLRNLEQLDASNNQISDL 157

                         90       100
                 ....*....|....*....|..
gi 568916928 142 P--ADMFREAHGLVHIDLSHNP 161
Cdd:cd21340  158 EelLDLLSSWPSLRELDLTGNP 179
LRRNT pfam01462
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 51-77 2.24e-04

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


Pssm-ID: 396168 [Multi-domain]  Cd Length: 28  Bit Score: 37.61  E-value: 2.24e-04
                          10        20
                  ....*....|....*....|....*..
gi 568916928   51 CPVLCTCRNQVVDCSNQRLFSVPPDLP 77
Cdd:pfam01462   2 CPVPCHCSATVVNCSDRGLTAVPRDLP 28
LRRCT smart00082
Leucine rich repeat C-terminal domain;
209-260 2.95e-04

Leucine rich repeat C-terminal domain;


Pssm-ID: 214507 [Multi-domain]  Cd Length: 51  Bit Score: 38.18  E-value: 2.95e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 568916928   209 NPWVCGCTMEPLLKWLRNRIQrcTADSQLAECRGPPEVEGaPLFSLTEESFK 260
Cdd:smart00082   1 NPFICDCELRWLLRWLQANEH--LQDPVDLRCASPSSLRG-PLLELLHSEFK 49
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 104-209 2.00e-03

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 39.39  E-value: 2.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568916928 104 LRVLDLRNNSLMEL-PPGLF---LHAKRLAHLDLSYNNLS----HVPADMFREAHGLVHIDLSHN----PWLRRVhPQAF 171
Cdd:COG5238  210 VTTLWLKRNPIGDEgAEILAealKGNKSLTTLDLSNNQIGdegvIALAEALKNNTTVETLYLSGNqigaEGAIAL-AKAL 288

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 568916928 172 QGLVHLRDLDLSYGGLAFLSLEAL-EGLPG---LVTLQIGGN 209
Cdd:COG5238  289 QGNTTLTSLDLSVNRIGDEGAIALaEGLQGnktLHTLNLAYN 330
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 81-183 4.26e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 37.84  E-value: 4.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568916928  81 RNLSLAHNRIAAVPpGyLTCYMELRVLDLRNNSLmelPPGLFLH---------AKRLAHLDLSYNNLSHVpaDMFREAHG 151
Cdd:cd21340   71 KKLYLGGNRISVVE-G-LENLTNLEELHIENQRL---PPGEKLTfdprslaalSNSLRVLNISGNNIDSL--EPLAPLRN 143

                         90       100       110
                 ....*....|....*....|....*....|....
gi 568916928 152 LVHIDLSHNPwLRRVHP--QAFQGLVHLRDLDLS 183
Cdd:cd21340  144 LEQLDASNNQ-ISDLEEllDLLSSWPSLRELDLT 176
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 104-138 5.90e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 34.14  E-value: 5.90e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 568916928  104 LRVLDLRNNSLMELPPGLFLhaKRLAHLDLSYNNL 138
Cdd:pfam12799   3 LEVLDLSNNQITDIPPLAKL--PNLETLDLSGNNK 35
LRR smart00370
Leucine-rich repeats, outliers;
103-124 5.97e-03

Leucine-rich repeats, outliers;


Pssm-ID: 197688 [Multi-domain]  Cd Length: 24  Bit Score: 33.48  E-value: 5.97e-03
                           10        20
                   ....*....|....*....|..
gi 568916928   103 ELRVLDLRNNSLMELPPGLFLH 124
Cdd:smart00370   3 NLRELDLSNNQLSSLPPGAFQG 24
LRR_TYP smart00369
Leucine-rich repeats, typical (most populated) subfamily;
103-124 5.97e-03

Leucine-rich repeats, typical (most populated) subfamily;


Pssm-ID: 197687 [Multi-domain]  Cd Length: 24  Bit Score: 33.48  E-value: 5.97e-03
                           10        20
                   ....*....|....*....|..
gi 568916928   103 ELRVLDLRNNSLMELPPGLFLH 124
Cdd:smart00369   3 NLRELDLSNNQLSSLPPGAFQG 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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