|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
460-714 |
9.68e-32 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 125.23 E-value: 9.68e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 460 LYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEAL 539
Cdd:COG2956 17 NYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 540 DSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPS 619
Cdd:COG2956 97 ELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPD 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 620 NIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKEIHRKFPENVECLRFLVRLC 699
Cdd:COG2956 177 CARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLE 256
|
250
....*....|....*
gi 564386400 700 TDIGLKEVQEYATKL 714
Cdd:COG2956 257 RKEGLEAALALLERQ 271
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
422-684 |
1.29e-31 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 124.84 E-value: 1.29e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 422 KAITYLRQKDFNQAVDTLKMFEKKDSRvKSAAATNLSFLYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDY 501
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPE-TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 502 EKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLIS 581
Cdd:COG2956 93 DRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALK 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 582 VVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKWqLMV 661
Cdd:COG2956 173 LDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-LAL 251
|
250 260
....*....|....*....|...
gi 564386400 662 ASCFRRSGNYQKALDTYKEIHRK 684
Cdd:COG2956 252 ADLLERKEGLEAALALLERQLRR 274
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
491-717 |
3.07e-29 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 117.91 E-value: 3.07e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 491 KGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPN 570
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 571 QAIEWLMQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLI 650
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564386400 651 QPTQVKWQLMVASCFRRSGNYQKALDTYKEIHRKFPENVECLRFLVRLCTDIGlkEVQEYATKLKRL 717
Cdd:COG2956 174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG--DPEEALELLRKA 238
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
481-647 |
5.26e-27 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 110.48 E-value: 5.26e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 481 DRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIA 560
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 561 NVYELMEDPNQAIEWLMQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKA 640
Cdd:COG0457 84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163
|
....*..
gi 564386400 641 IQYFERA 647
Cdd:COG0457 164 LELLEKL 170
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
453-610 |
1.66e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 106.24 E-value: 1.66e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 453 AATNLSFLYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKL 532
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQAL 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564386400 533 NRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLISVVPTDSQALSKLGELYDSEGDKSQAFQYY 610
Cdd:COG0457 90 GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
523-698 |
9.21e-21 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 93.26 E-value: 9.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 523 YNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLISVVPTDSQALSKLGELYDSEGD 602
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 603 KSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKEIH 682
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170
....*....|....*.
gi 564386400 683 RKFPENVECLRFLVRL 698
Cdd:COG2956 172 KLDPDCARALLLLAEL 187
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
420-580 |
1.30e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 86.21 E-value: 1.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 420 INKAITYLRQKDFNQAVDTLKMFEKKDSRVkSAAATNLSFLYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANG 499
Cdd:COG0457 12 NNLGLAYRRLGRYEEAIEDYEKALELDPDD-AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 500 DYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQL 579
Cdd:COG0457 91 RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKL 170
|
.
gi 564386400 580 I 580
Cdd:COG0457 171 E 171
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
497-682 |
1.64e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 90.44 E-value: 1.64e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 497 ANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWL 576
Cdd:COG3914 56 AAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAAL 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 577 MQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVK 656
Cdd:COG3914 136 RRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD 215
|
170 180
....*....|....*....|....*.
gi 564386400 657 WQLMVASCFRRSGNYQKALDTYKEIH 682
Cdd:COG3914 216 AHSNLLFALRQACDWEVYDRFEELLA 241
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
240-580 |
4.53e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 85.17 E-value: 4.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 240 GNIYLKQRNYSKAIKFYRMALDQIPSvhkemRIKIMQNIGITFIKTGQYSDAINSFEHIMSMAP-SLKAGFNLILSCFAI 318
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELDPE-----TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPdRAEALLELAQDYLKA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 319 GDREKMKKAFQKLiavpLEIDEDDKyispsddphtnllieaiknDHLRQMererkamaekyimtaakliapvieasfavg 398
Cdd:COG2956 90 GLLDRAEELLEKL----LELDPDDA-------------------EALRLL------------------------------ 116
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 399 ynwcvevvkasqyvelandleinkAITYLRQKDFNQAVDTLKMFEKKDSRvKSAAATNLSFLYYLENEFAQASSYADLAV 478
Cdd:COG2956 117 ------------------------AEIYEQEGDWEKAIEVLERLLKLGPE-NAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 479 SSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLcQ 558
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL-A 250
|
330 340
....*....|....*....|..
gi 564386400 559 IANVYELMEDPNQAIEWLMQLI 580
Cdd:COG2956 251 LADLLERKEGLEAALALLERQL 272
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
450-586 |
2.41e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 79.47 E-value: 2.41e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 450 KSAAATNLSFLYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTY 529
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 564386400 530 KKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLISVVPTD 586
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
512-706 |
2.91e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 81.98 E-value: 2.91e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 512 LRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLISVVPTDSQALS 591
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 592 KLGELYDSEGDKsqafqyyyesyryfpsnieviewlgayyidtqfcEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNY 671
Cdd:COG0457 81 NLGLALQALGRY----------------------------------EEALEDYDKALELDPDDAEALYNLGLALLELGRY 126
|
170 180 190
....*....|....*....|....*....|....*
gi 564386400 672 QKALDTYKEIHRKFPENVECLRFLVRLCTDIGLKE 706
Cdd:COG0457 127 DEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
213-698 |
5.18e-17 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 85.91 E-value: 5.18e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 213 YAEALNTYQVIVKNKMFSNAGRLkvNMGNIYLKQRNYSKAIKFYRMALDQIPSVHKEMRIKIMqnigITFiKTGQYSDAI 292
Cdd:TIGR02917 209 IELALAAYRKAIALRPNNIAVLL--ALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKAL----VDF-QKKNYEDAR 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 293 NSFEHIMSMAPS-LKAGFNLILSCFAIGDREKmkkAFQKLIAVpLEIDEDDKYISpsddphtnLLIEAIKndhlrqmere 371
Cdd:TIGR02917 282 ETLQDALKSAPEyLPALLLAGASEYQLGNLEQ---AYQYLNQI-LKYAPNSHQAR--------RLLASIQ---------- 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 372 rkaMAEKYIMTAAKLIAPVI--------------EASFAVGynwcvEVVKASQYVELANDLEIN-------KAITYLRQK 430
Cdd:TIGR02917 340 ---LRLGRVDEAIATLSPALgldpddpaalsllgEAYLALG-----DFEKAAEYLAKATELDPEnaaartqLGISKLSQG 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 431 DFNQAVDTLKMFEKKDSRVKSAAaTNLSFLYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKE 510
Cdd:TIGR02917 412 DPSEAIADLETAAQLDPELGRAD-LLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEK 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 511 ALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLISVVPTDSQAL 590
Cdd:TIGR02917 491 ALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPA 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 591 SKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKWQLMVASCFRRSGN 670
Cdd:TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKN 650
|
490 500
....*....|....*....|....*...
gi 564386400 671 YQKALDTYKEIHRKFPENVECLRFLVRL 698
Cdd:TIGR02917 651 YAKAITSLKRALELKPDNTEAQIGLAQL 678
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
203-692 |
1.31e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 84.75 E-value: 1.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 203 LASQYSANEMYAEALNTYQVIVKNKMfSNAGRLKVnMGNIYLKQRNYSKAIKFyrmaLDQIPSVHKEMRIKIMQnIGITF 282
Cdd:TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLDP-DDPAALSL-LGEAYLALGDFEKAAEY----LAKATELDPENAAARTQ-LGISK 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 283 IKTGQYSDAINSFEHIMSMAPSLK-AGFNLILSCFAIGDREKMKKAFQKLIAvpleideddkyiSPSDDPHTNLLIEAI- 360
Cdd:TIGR02917 408 LSQGDPSEAIADLETAAQLDPELGrADLLLILSYLRSGQFDKALAAAKKLEK------------KQPDNASLHNLLGAIy 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 361 --KNDhlrqMERERKAMAEKYIMTAAKLIAPVIEASFAVGYNWCVEVVKASQYVeLANDLEINKAIT-----YLRQKDFN 433
Cdd:TIGR02917 476 lgKGD----LAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKV-LTIDPKNLRAILalaglYLRTGNEE 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 434 QAVDTLKMFEKKDSRvKSAAATNLSFLYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALR 513
Cdd:TIGR02917 551 EAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 514 NDSSCTEALYNIGLTYKKLNRLDEALDSF---LKLHAILRNSAQVLCQIANvyeLMEDPNQAIEWLMQLISVVPTDSQAL 590
Cdd:TIGR02917 630 LQPDSALALLLLADAYAVMKNYAKAITSLkraLELKPDNTEAQIGLAQLLL---AAKRTESAKKIAKSLQKQHPKAALGF 706
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 591 SKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEwLGAYYIDTQFCEKAIQYFERASLIQPTQVKWQLMVASCFRRSGN 670
Cdd:TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD 785
|
490 500
....*....|....*....|..
gi 564386400 671 YQKALDTYKEIHRKFPENVECL 692
Cdd:TIGR02917 786 YDKAIKHYQTVVKKAPDNAVVL 807
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
553-688 |
3.66e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 76.00 E-value: 3.66e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 553 AQVLCQIANVYELMEDPNQAIEWLMQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYI 632
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 564386400 633 DTQFCEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKEIHRKFPEN 688
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
486-620 |
1.74e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 74.07 E-value: 1.74e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 486 SALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYEL 565
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 564386400 566 MEDPNQAIEWLMQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSN 620
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
503-610 |
2.34e-15 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 73.50 E-value: 2.34e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 503 KAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLISV 582
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|....*...
gi 564386400 583 VPTDSQALSKLGELYDSEGDKSQAFQYY 610
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAW 108
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
460-593 |
2.60e-15 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 80.04 E-value: 2.60e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 460 LYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEAL 539
Cdd:COG3914 87 LLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAI 166
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 564386400 540 DSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLISVVPTDSQALSKL 593
Cdd:COG3914 167 AALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
421-616 |
4.86e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 75.81 E-value: 4.86e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 421 NKAITYLRQKDFNQAVDTLKMFEKKDSRVkSAAATNLSFLYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGD 500
Cdd:COG0457 47 NLGLAYLRLGRYEEALADYEQALELDPDD-AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGR 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 501 YEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLI 580
Cdd:COG0457 126 YDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQ 205
|
170 180 190
....*....|....*....|....*....|....*.
gi 564386400 581 SVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRY 616
Cdd:COG0457 206 ALRKKLAILTLAALAELLLLALALLLALRLAALALY 241
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
243-688 |
1.06e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 78.59 E-value: 1.06e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 243 YLKQRNYSKAIKFYRMALDQIPSvHKEMRIKImqniGITFIKTGQYSDAINSFEHIMSMAPSlKAGFNLILSCFAIGDRE 322
Cdd:TIGR02917 32 YLQKNKYKAAIIQLKNALQKDPN-DAEARFLL----GKIYLALGDYAAAEKELRKALSLGYP-KNQVLPLLARAYLLQGK 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 323 kmkkaFQKLIavpleiDEDDKYISPSDDPHTNLLiEAIKNDHLRQMERERkamAEKYIMTAAKLIAPVIEASFAVGY--- 399
Cdd:TIGR02917 106 -----FQQVL------DELPGKTLLDDEGAAELL-ALRGLAYLGLGQLEL---AQKSYEQALAIDPRSLYAKLGLAQlal 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 400 ---------NWCVEVVKAS----QYVELANDLEinkaityLRQKDFNQAVDTLKMFEKKDSRvKSAAATNLSFLYYLENE 466
Cdd:TIGR02917 171 aenrfdearALIDEVLTADpgnvDALLLKGDLL-------LSLGNIELALAAYRKAIALRPN-NIAVLLALATILIEAGE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 467 FAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLH 546
Cdd:TIGR02917 243 FEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQIL 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 547 AILRNSAQVLCQIANVYELMEDPNQAIEWLMQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEW 626
Cdd:TIGR02917 323 KYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQ 402
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564386400 627 LGAYYIDTQFCEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKEIHRKFPEN 688
Cdd:TIGR02917 403 LGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDN 464
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
516-654 |
3.81e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 70.22 E-value: 3.81e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 516 SSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLISVVPTDSQALSKLGE 595
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 564386400 596 LYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQ 654
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
408-602 |
8.92e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 71.95 E-value: 8.92e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 408 ASQYVELANDLEInKAITYLRQKDFNQAVDTLKMFEKKDSRvKSAAATNLSFLYYLENEFAQASSYADLAVSSDRYNPSA 487
Cdd:COG3914 71 AAALLLLAALLEL-AALLLQALGRYEEALALYRRALALNPD-NAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEA 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 488 LTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELME 567
Cdd:COG3914 149 YLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQAC 228
|
170 180 190
....*....|....*....|....*....|....*
gi 564386400 568 DpNQAIEWLMQLISVVPTDSQALSKLGELYDSEGD 602
Cdd:COG3914 229 D-WEVYDRFEELLAALARGPSELSPFALLYLPDDD 262
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
201-515 |
4.38e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.45 E-value: 4.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 201 FNLASQYSANEMYAEALNTYQVIVKNKmfSNAGRLKVNMGNIYLKQRNYSKAIKFYRMALDQIPSvhkemRIKIMQNIGI 280
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELD--PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD-----RAEALLELAQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 281 TFIKTGQYSDAINSFEHIMSMAP-SLKAGFNLILSCFAIGDREKMKKAFQKLIAvpleideddkyISPSDDPHTNLLIEA 359
Cdd:COG2956 85 DYLKAGLLDRAEELLEKLLELDPdDAEALRLLAEIYEQEGDWEKAIEVLERLLK-----------LGPENAHAYCELAEL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 360 ikndhlrQMERERKAMAEKYIMTAAKlIAPVieasfavgynwCVEVvkasqYVELANdleinkaiTYLRQKDFNQAVDTL 439
Cdd:COG2956 154 -------YLEQGDYDEAIEALEKALK-LDPD-----------CARA-----LLLLAE--------LYLEQGDYEEAIAAL 201
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564386400 440 KMFEKKDSRvKSAAATNLSFLYYLENEFAQASSYADLAVSSDRyNPSALTNKGNTVFANGDYEKAAEFYKEALRND 515
Cdd:COG2956 202 ERALEQDPD-YLPALPRLAELYEKLGDPEEALELLRKALELDP-SDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
571-690 |
4.39e-12 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 63.87 E-value: 4.39e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 571 QAIEWLMQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLI 650
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 564386400 651 QPTQVKWQLMVASCFRRSGNYQKALDTYKEIHRKFPENVE 690
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
147-361 |
1.45e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 68.10 E-value: 1.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 147 ELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVT-SPENinldltYSVLFNLASQYSANEMYAEALNTYQVIVK 225
Cdd:COG3914 67 AAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAlNPDN------AEALFNLGNLLLALGRLEEALAALRRALA 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 226 NKmfSNAGRLKVNMGNIYLKQRNYSKAIKFYRMALDQIPSvhkemRIKIMQNIGITFIKTGQYSDAINSFEHIMSMAPS- 304
Cdd:COG3914 141 LN--PDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPD-----NAEALNNLGNALQDLGRLEEAIAAYRRALELDPDn 213
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564386400 305 LKAGFNLILSCFAIGDREkmkkAFQKLIAVPLEIDEDDKYISP------SDDPHTNLLIEAIK 361
Cdd:COG3914 214 ADAHSNLLFALRQACDWE----VYDRFEELLAALARGPSELSPfallylPDDDPAELLALARA 272
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
496-584 |
1.81e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 60.95 E-value: 1.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 496 FANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDsFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEW 575
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81
|
....*....
gi 564386400 576 LMQLISVVP 584
Cdd:COG3063 82 LERALELDP 90
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
197-342 |
9.18e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 63.10 E-value: 9.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 197 YSVLFNLASQYSANEMYAEALNTYQVIVKnkMFSNAGRLKVNMGNIYLKQRNYSKAIKFYRMALDQIPSVhkemrIKIMQ 276
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALE--LDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD-----AEALN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564386400 277 NIGITFIKTGQYSDAINSFEHIMSMAPSL-KAGFNLILSCFAIGDREKMKKAFQKLiavpLEIDEDD 342
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDaEALYNLGLALLELGRYDEAIEAYERA----LELDPDD 143
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
408-548 |
2.75e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 59.59 E-value: 2.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 408 ASQYVELANDLEINKAITYLRQKDFNQAVDTLKMFEKKDSRVKSAAATNLSFLYYLENEFAQASSYADLAVSSDRYNPSA 487
Cdd:COG5010 11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564386400 488 LTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAI 548
Cdd:COG5010 91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
586-718 |
3.11e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.05 E-value: 3.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 586 DSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKWQLMVASCF 665
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 564386400 666 RRSGNYQKALDTYKEIHRKFPENVECLRFLVRLCTDIG-LKEVQEYATKLKRLE 718
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGrPDEAIAALEKALELD 136
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
496-584 |
3.46e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 59.20 E-value: 3.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 496 FANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEW 575
Cdd:COG5010 65 NKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAA 144
|
....*....
gi 564386400 576 LMQLISVVP 584
Cdd:COG5010 145 LQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
477-589 |
4.53e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 58.09 E-value: 4.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 477 AVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVL 556
Cdd:COG4235 9 ALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEAL 88
|
90 100 110
....*....|....*....|....*....|...
gi 564386400 557 CQIANVYELMEDPNQAIEWLMQLISVVPTDSQA 589
Cdd:COG4235 89 YLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
456-554 |
4.66e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 58.09 E-value: 4.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 456 NLSFLYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRL 535
Cdd:COG4235 22 LLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101
|
90
....*....|....*....
gi 564386400 536 DEALDSFLKLHAILRNSAQ 554
Cdd:COG4235 102 AEAIAAWQKLLALLPADAP 120
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
466-618 |
7.39e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 58.43 E-value: 7.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 466 EFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKL 545
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564386400 546 HAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFP 618
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
460-548 |
2.46e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 55.18 E-value: 2.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 460 LYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFyKEALRNDSSCTEALYNIGLTYKKLNRLDEAL 539
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
....*....
gi 564386400 540 DSFLKLHAI 548
Cdd:COG3063 80 AYLERALEL 88
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
452-628 |
1.30e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 56.08 E-value: 1.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 452 AAATNLSFLYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSsCTEALYNIGLTYKK 531
Cdd:COG4785 7 ALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPD-LAQLYYERGVAYDS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 532 LNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYY 611
Cdd:COG4785 86 LGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLE 165
|
170
....*....|....*..
gi 564386400 612 ESYRYFPSNIEVIEWLG 628
Cdd:COG4785 166 KALELDPNDPERALWLY 182
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
520-652 |
3.20e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.81 E-value: 3.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 520 EALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLISVVPTDSQALSKLGELYDS 599
Cdd:COG5010 21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSR 100
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 564386400 600 EGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQP 652
Cdd:COG5010 101 SGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
459-545 |
1.58e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 50.38 E-value: 1.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 459 FLYYLENEFAQASSYADLAVS---SDRYNPSALTNKGNTVFANGDYEKAAEFYKEALR---NDSSCTEALYNIGLTYKKL 532
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKrypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKrypDSPKAPDALLKLGLSYLEL 80
|
90
....*....|...
gi 564386400 533 NRLDEALDSFLKL 545
Cdd:COG1729 81 GDYDKARATLEEL 93
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
529-619 |
1.85e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.78 E-value: 1.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 529 YKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEwLMQLISVVPTDSQALSKLGELYDSEGDKSQAFQ 608
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 564386400 609 YYYESYRYFPS 619
Cdd:COG3063 81 YLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
363-515 |
2.68e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 51.11 E-value: 2.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 363 DHLRQMERERKAMAEKYIMTAAKLIAPVIEASFAVGYNWCVEVVKASQYVELANDLEINKAITYLRQKDFNQAVDTLKMF 442
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564386400 443 EKKDSRvKSAAATNLSFLYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRND 515
Cdd:COG5010 81 LQLDPN-NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
199-333 |
4.41e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 52.42 E-value: 4.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 199 VLFNLASQYSANEMYAEALNTYQVIVKnkMFSNAGRLKVNMGNIYLKQRNYSKAIKFYRMALDQIPSvhkemRIKIMQNI 278
Cdd:COG2956 146 AYCELAELYLEQGDYDEAIEALEKALK--LDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD-----YLPALPRL 218
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 564386400 279 GITFIKTGQYSDAINSFEHIMSMAPSLKAGFNLILSCFAIGDREKMKKAFQKLIA 333
Cdd:COG2956 219 AELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
562-652 |
5.90e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 48.24 E-value: 5.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 562 VYELMEDPNQAIEWLMQLISVVPTDSQALSKLGELYDSEGDKSQAFQyYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAI 641
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 564386400 642 QYFERASLIQP 652
Cdd:COG3063 80 AYLERALELDP 90
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
484-610 |
1.62e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 49.91 E-value: 1.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 484 NPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLcQIANVY 563
Cdd:COG4785 106 LAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERA-LWLYLA 184
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 564386400 564 ELMEDPNQAIEWLMQLIsvvptdsqalsklGELYDSEGDKSQAFQYY 610
Cdd:COG4785 185 ERKLDPEKALALLLEDW-------------ATAYLLQGDTEEARELF 218
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
534-686 |
2.01e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.42 E-value: 2.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 534 RLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYES 613
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564386400 614 YRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKEIHRKFP 686
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
426-517 |
3.10e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 46.32 E-value: 3.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 426 YLRQKDFNQAVDTLKMFEKKDSRVkSAAATNLSFLYYLENEFAQASSYaDLAVSSDRYNPSALTNKGNTVFANGDYEKAA 505
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDN-ADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 564386400 506 EFYKEALRNDSS 517
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
423-515 |
4.01e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.92 E-value: 4.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 423 AITYLRQKDFNQAVDTLKMFEKKDSRvKSAAATNLSFLYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYE 502
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPD-NADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYA 102
|
90
....*....|...
gi 564386400 503 KAAEFYKEALRND 515
Cdd:COG4235 103 EAIAAWQKLLALL 115
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
199-333 |
5.37e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.96 E-value: 5.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 199 VLFNLASQYSANEMYAEALNTYQVIVKNKmfSNAGRLKVNMGNIYLKQRNYSKAIKFYRMALDQIPSvhkemRIKIMQNI 278
Cdd:COG2956 78 ALLELAQDYLKAGLLDRAEELLEKLLELD--PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE-----NAHAYCEL 150
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 564386400 279 GITFIKTGQYSDAINSFEHIMSMAP-SLKAGFNLILSCFAIGDREKMKKAFQKLIA 333
Cdd:COG2956 151 AELYLEQGDYDEAIEALEKALKLDPdCARALLLLAELYLEQGDYEEAIAALERALE 206
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
237-334 |
5.56e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.54 E-value: 5.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 237 VNMGNIYLKQRNYSKAIKFYRMALDQIPSvhkemRIKIMQNIGITFIKTGQYSDAINSFEHIMSMAPS-LKAGFNLILSC 315
Cdd:COG4235 21 LLLGRAYLRLGRYDEALAAYEKALRLDPD-----NADALLDLAEALLAAGDTEEAEELLERALALDPDnPEALYLLGLAA 95
|
90
....*....|....*....
gi 564386400 316 FAIGDREKMKKAFQKLIAV 334
Cdd:COG4235 96 FQQGDYAEAIAAWQKLLAL 114
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
199-303 |
7.37e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 46.34 E-value: 7.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 199 VLFNLASQYSANEMYAEALNTYQVIVKnkMFSNAGRLKVNMGNIYLKQRNYSKAIKFYRMALDQIPSvhkemRIKIMQNI 278
Cdd:COG4783 40 AFALLGEILLQLGDLDEAIVLLHEALE--LDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPE-----HPEAYLRL 112
|
90 100
....*....|....*....|....*
gi 564386400 279 GITFIKTGQYSDAINSFEHIMSMAP 303
Cdd:COG4783 113 ARAYRALGRPDEAIAALEKALELDP 137
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
426-514 |
1.19e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.98 E-value: 1.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 426 YLRQKDFNQAVDTLKMFEKK--DSRVKSAAATNLSFLYYLENEFAQASSYADLAVS---SDRYNPSALTNKGNTVFANGD 500
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKrypDSPKAPDALLKLGLSYLELGD 82
|
90
....*....|....
gi 564386400 501 YEKAAEFYKEALRN 514
Cdd:COG1729 83 YDKARATLEELIKK 96
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
486-551 |
1.25e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.92 E-value: 1.25e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564386400 486 SALTNKGNTVFANGDYEKAAEFYKEALR-------NDSSCT-EALYNIGLTYKKLNRLDEALDSFLKLHAILRN 551
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEiarrllgPDHPLTaTTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
234-304 |
1.96e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.53 E-value: 1.96e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564386400 234 RLKVNMGNIYLKQRNYSKAIKFYRMALD---QIPSVHKEMRIKIMQNIGITFIKTGQYSDAINSFEHIMSMAPS 304
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEiarRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
412-692 |
2.20e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 48.16 E-value: 2.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 412 VELANDLEINK---------AITYLRQKDFNQAVdtlKMFEKKDSRVKSAAATN--LSFLYYLENEFAQASSYADLAVSS 480
Cdd:TIGR02917 43 IQLKNALQKDPndaearfllGKIYLALGDYAAAE---KELRKALSLGYPKNQVLplLARAYLLQGKFQQVLDELPGKTLL 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 481 DRYNPSA-LTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALynIGLTYKKLNRldealdsflklhailrnsaqvlcqi 559
Cdd:TIGR02917 120 DDEGAAElLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAK--LGLAQLALAE------------------------- 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 560 anvyelmEDPNQAIEWLMQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEK 639
Cdd:TIGR02917 173 -------NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEE 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 564386400 640 AIQYFERASLIQPTQVK---WQLMVAscFRRsGNYQKALDTYKEIHRKFPENVECL 692
Cdd:TIGR02917 246 AEKHADALLKKAPNSPLahyLKALVD--FQK-KNYEDARETLQDALKSAPEYLPAL 298
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
618-723 |
2.72e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.61 E-value: 2.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 618 PSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKEIHRKFPENVECLRFLVR 697
Cdd:COG4235 14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGL 93
|
90 100
....*....|....*....|....*.
gi 564386400 698 LctdigLKEVQEYATKLKRLEKMKEM 723
Cdd:COG4235 94 A-----AFQQGDYAEAIAAWQKLLAL 114
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
497-627 |
3.30e-05 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 45.05 E-value: 3.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 497 ANGDYEKAAEFYKEALR-----NDSSctEALYNIGLTYKKLNRLDEALDSFLKlhAILRNSAQVLC--QIANVYElmedp 569
Cdd:PRK02603 47 ADGEYAEALENYEEALKleedpNDRS--YILYNMGIIYASNGEHDKALEYYHQ--ALELNPKQPSAlnNIAVIYH----- 117
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564386400 570 nqaiewlmqlisvvptdsqalsKLGELYDSEGDKS-------QAFQYYYESYRYFPSN-IEVIEWL 627
Cdd:PRK02603 118 ----------------------KRGEKAEEAGDQDeaealfdKAAEYWKQAIRLAPNNyIEAQNWL 161
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
497-719 |
3.46e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 47.39 E-value: 3.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 497 ANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEwL 576
Cdd:TIGR02917 34 QKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLD-E 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 577 MQLISVVPTDSQA--LSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLgAYYIDTQF-CEKAIQYFERASLIQPT 653
Cdd:TIGR02917 113 LPGKTLLDDEGAAelLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGL-AQLALAENrFDEARALIDEVLTADPG 191
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564386400 654 QVKWQLMVASCFRRSGNYQKALDTYKEIHRKFPENVECLRFLVRlcTDIGLKEVQEYATKLKRLEK 719
Cdd:TIGR02917 192 NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALAT--ILIEAGEFEEAEKHADALLK 255
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
452-680 |
3.72e-05 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 46.44 E-value: 3.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 452 AAATNLSFLYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEAlynIGLT--- 528
Cdd:COG3071 17 LAALLEGLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELA---VLLTrae 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 529 -YKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIE----------------------WLMQLISVVPT 585
Cdd:COG3071 94 lLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLEllpalrkhkalsaeeaqalerrAYLGLLRQAAR 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 586 DSQALSKL------------------GELYDSEGDKSQAFQYYYESYRYFPSN-----------------IEVIE-WLGA 629
Cdd:COG3071 174 DAEALKALwkalpraerrdpelaaayARALIALGDHDEAERLLREALKRQWDPrlvrlygrlqggdpakqLKRAEkWLKK 253
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564386400 630 Y-------------YIDTQFCEKAIQYFERASLIQPTQVKWQLMvASCFRRSGNYQKALDTYKE 680
Cdd:COG3071 254 HpndpdlllalgrlCLRNQLWGKAREYLEAALALRPSAEAYAEL-ARLLEQLGDPEEAAEHYRK 316
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
596-687 |
4.24e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.85 E-value: 4.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 596 LYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQyFERASLIQPTQVKWQLMVASCFRRSGNYQKAL 675
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 564386400 676 DTYKEIHRKFPE 687
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| SNAP |
cd15832 |
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ... |
501-721 |
5.57e-05 |
|
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.
Pssm-ID: 276937 [Multi-domain] Cd Length: 278 Bit Score: 45.65 E-value: 5.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 501 YEKAAEFYkEALRNDSSCTEALYNIGLTYKKLNrLDEALDSFLKlhAI--------LRNSAQVLCQIANVYE-LMEDPNQ 571
Cdd:cd15832 55 FLKAAECQ-LKLDSKHDAANAYVEAAKCYKKVD-PQEAVNCLEK--AIeiytemgrFRQAAKHLKEIAELYEnELGDLDK 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 572 AIEwlmqlisvvptdsqALSKLGELYDSEGDKSQAFQYYYESYRYFPSnieviewLGAYyidtqfcEKAIQYFERA---- 647
Cdd:cd15832 131 AIE--------------AYEQAADYYEGEGANSLANKCYLKVADLAAQ-------LEDY-------DKAIEIYEQVarss 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 648 ---SLIQPTQVKWQLMVASCFRRSGNY---QKALDTYKEIHRKFPENVEClRFLVRLCTDIGLKEVQEYATKLK------ 715
Cdd:cd15832 183 lenNLLKYSAKDYFLKAGLCHLAAGDVvaaQRALEKYAELDPSFAGSREC-KLLEDLLEAVEEGDVEAFTDAVKeydsis 261
|
....*.
gi 564386400 716 RLEKMK 721
Cdd:cd15832 262 KLDKWK 267
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
496-625 |
6.91e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.06 E-value: 6.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 496 FANGDYEKAAEFYKEALR---NDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVlcqianvyelmedpnqa 572
Cdd:COG1729 4 LKAGDYDEAIAAFKAFLKrypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKA----------------- 66
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 564386400 573 iewlmqlisvvptdSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIE 625
Cdd:COG1729 67 --------------PDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKE 105
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
207-303 |
7.21e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.80 E-value: 7.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 207 YSANEMYAEALNTYQVIVKnkMFSNAGRLKVNMGNIYLKQRNYSKAIKFYRMALDQIPSvhkemRIKIMQNIGITFIKTG 286
Cdd:COG5010 64 YNKLGDFEESLALLEQALQ--LDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD-----NPNAYSNLAALLLSLG 136
|
90
....*....|....*..
gi 564386400 287 QYSDAINSFEHIMSMAP 303
Cdd:COG5010 137 QDDEAKAALQRALGTSP 153
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
243-333 |
8.80e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 42.67 E-value: 8.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 243 YLKQRNYSKAIKFYRMALDQIPSvhKEMRIKIMQNIGITFIKTGQYSDAINSFEHIMSMAPS----LKAGFNLILSCFAI 318
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPN--SPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkaPDALLKLGLSYLEL 80
|
90
....*....|....*
gi 564386400 319 GDREKMKKAFQKLIA 333
Cdd:COG1729 81 GDYDKARATLEELIK 95
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
492-532 |
1.16e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 40.15 E-value: 1.16e-04
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 564386400 492 GNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKL 532
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
521-578 |
1.42e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.83 E-value: 1.42e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564386400 521 ALYNIGLTYKKLNRLDEALDSFLKLHAILR--------NSAQVLCQIANVYELMEDPNQAIEWLMQ 578
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARrllgpdhpLTATTLLNLGRLYLELGRYEEALELLER 70
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
458-534 |
1.62e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 43.12 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 458 SFLYYLENEFAQAS-SYAD--------LAVSSDRYNPS-ALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGL 527
Cdd:PRK02603 35 AFVYYRDGMSAQADgEYAEalenyeeaLKLEEDPNDRSyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114
|
....*..
gi 564386400 528 TYKKLNR 534
Cdd:PRK02603 115 IYHKRGE 121
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
600-687 |
1.72e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 41.90 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 600 EGDKSQAFQYYYESYRYFPSNI---EVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKWQ---LMVASCFRRSGNYQK 673
Cdd:COG1729 6 AGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPdalLKLGLSYLELGDYDK 85
|
90
....*....|....
gi 564386400 674 ALDTYKEIHRKFPE 687
Cdd:COG1729 86 ARATLEELIKKYPD 99
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
238-265 |
1.92e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 39.33 E-value: 1.92e-04
10 20
....*....|....*....|....*...
gi 564386400 238 NMGNIYLKQRNYSKAIKFYRMALDQIPS 265
Cdd:pfam00515 6 NLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
242-333 |
1.92e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.92 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 242 IYLKQRNYSKAIKFYRMALDQIPSvhkemRIKIMQNIGITFIKTGQYSDAInSFEHIMSMAPSL-KAGFNLILSCFAIGD 320
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD-----NADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNaEALLNLAELLLELGD 74
|
90
....*....|...
gi 564386400 321 REKMKKAFQKLIA 333
Cdd:COG3063 75 YDEALAYLERALE 87
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
425-610 |
2.02e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 44.13 E-value: 2.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 425 TYLRQKDFNQAVDTLKMFEKKDSrVKSAAATNLSFLYYLENEFAQASSYADLAV------SSDRYNPSALTNKGNTVFAN 498
Cdd:COG3071 128 AYRQLGDWEELLELLPALRKHKA-LSAEEAQALERRAYLGLLRQAARDAEALKAlwkalpRAERRDPELAAAYARALIAL 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 499 GDYEKAAEFYKEALRNDSSctEALYNiglTYKKLNRLDEA-----LDSFLKLHAilrNSAQVLCQIANVYELMEDPNQAI 573
Cdd:COG3071 207 GDHDEAERLLREALKRQWD--PRLVR---LYGRLQGGDPAkqlkrAEKWLKKHP---NDPDLLLALGRLCLRNQLWGKAR 278
|
170 180 190
....*....|....*....|....*....|....*..
gi 564386400 574 EWLMQLISVVPtDSQALSKLGELYDSEGDKSQAFQYY 610
Cdd:COG3071 279 EYLEAALALRP-SAEAYAELARLLEQLGDPEEAAEHY 314
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
238-265 |
2.85e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.58 E-value: 2.85e-04
10 20
....*....|....*....|....*...
gi 564386400 238 NMGNIYLKQRNYSKAIKFYRMALDQIPS 265
Cdd:smart00028 6 NLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| ANAPC3 |
pfam12895 |
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ... |
473-544 |
3.09e-04 |
|
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.
Pssm-ID: 463743 [Multi-domain] Cd Length: 82 Bit Score: 40.31 E-value: 3.09e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564386400 473 YADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSScTEALYNIGLTYKKLNRLDEALDSFLK 544
Cdd:pfam12895 11 LAERLLAAEPESPEDAYLLAQCLFLNGQYKRAYELLRKAKLNGSS-LGCRYLFAQCLLKLKKYDEALDALGK 81
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
241-333 |
3.69e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.87 E-value: 3.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 241 NIYLKQRNYSKAIKFYRMALDQIPSvhkemRIKIMQNIGITFIKTGQYSDAINSFEHIMSMAP-SLKAGFNLILSCFAIG 319
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPN-----NPELYYNLALLYSRSGDKDEAKEYYEKALALSPdNPNAYSNLAALLLSLG 136
|
90
....*....|....
gi 564386400 320 DREKMKKAFQKLIA 333
Cdd:COG5010 137 QDDEAKAALQRALG 150
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
199-296 |
5.50e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 42.69 E-value: 5.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 199 VLFNLASQYSANEMYAEALNTYQVIVKnkMFSNAGRLKVNMGNIYLKQRNYSKAIKFYRMALDQIPSVhkemrIKIMQNI 278
Cdd:COG0457 78 ALNNLGLALQALGRYEEALEDYDKALE--LDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD-----ADALYNL 150
|
90
....*....|....*...
gi 564386400 279 GITFIKTGQYSDAINSFE 296
Cdd:COG0457 151 GIALEKLGRYEEALELLE 168
|
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
471-688 |
5.58e-04 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 42.56 E-value: 5.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 471 SSYADLAVSSDrynPSALTNKGNTVFANGDYEKAAEFYKEALRN--DSSCTE-ALYNIGLTYKKLNRLDEAL---DSFLK 544
Cdd:COG4105 21 SSFKKALKSWD---AEELYEEAKEALEKGDYEKAIKLFEELEPRypGSPYAEqAQLMLAYAYYKQGDYEEAIaaaDRFIK 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 545 LHAILRNSAQVLCQIANV-YELMEDPN-------QAIEWLMQLISVVPtDSQ----ALSKLGELYDSEGDKsqAFQ--YY 610
Cdd:COG4105 98 LYPNSPNADYAYYLRGLSyYEQSPDSDrdqtstrKAIEAFQELINRYP-DSEyaedAKKRIDELRDKLARK--ELEvaRY 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564386400 611 YESYRYFPSNIEVIEWLGAYYIDTQFCEKAiqyferasliqptqvkWQLMVASCFRRsGNYQKALDTYKEIHRKFPEN 688
Cdd:COG4105 175 YLKRGAYVAAINRFQNVLEDYPDTPAVEEA----------------LYLLVEAYYAL-GRYDEAQDAAAVLGKNYPDS 235
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
230-333 |
8.29e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.56 E-value: 8.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 230 SNAGRLKVNMGNIYLKQRNYSKAIKFYRMALDQIPSvhkemRIKIMQNIGITFIKTGQYSDAINSFEHIMSMAP-SLKAG 308
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPD-----NPEAFALLGEILLQLGDLDEAIVLLHEALELDPdEPEAR 75
|
90 100
....*....|....*....|....*
gi 564386400 309 FNLILSCFAIGDREKMKKAFQKLIA 333
Cdd:COG4783 76 LNLGLALLKAGDYDEALALLEKALK 100
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
207-305 |
1.26e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.61 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 207 YSANEMYAEALNTYQVIVKnkMFSNAGRLKVNMGNIYLKQRNYSKAIKFyRMALDQIPSvhkemRIKIMQNIGITFIKTG 286
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALE--LDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPN-----NAEALLNLAELLLELG 73
|
90
....*....|....*....
gi 564386400 287 QYSDAINSFEHIMSMAPSL 305
Cdd:COG3063 74 DYDEALAYLERALELDPSA 92
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
356-535 |
1.41e-03 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 40.99 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 356 LIEAIKNDHLRQMERERKAMAEKYIMTAAkliapvieASFAVgynwcveVVKASQYVElANDLEinKAITYLRQkdfnqA 435
Cdd:COG2976 60 LLEALAAGDAAAAAAAAEKLIDDYGGTAY--------AALAA-------LLLAKAAVD-AGDLD--KAAAQLQW-----V 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 436 VDtlkmfEKKDSRVKSAAATNLSFLYYLENEFAQASSYADlAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRND 515
Cdd:COG2976 117 LD-----NAKDPALKALARLRLARVLLAQKKYDEALATLD-AVKPEAFAALYAELRGDILLAQGDKAEARAAYQKALAAL 190
|
170 180
....*....|....*....|
gi 564386400 516 SSCTEALYNIGLtykKLNRL 535
Cdd:COG2976 191 PEDAPLRQLLQM---KLDDL 207
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
485-518 |
1.88e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.63 E-value: 1.88e-03
10 20 30
....*....|....*....|....*....|....
gi 564386400 485 PSALTNKGNTVFANGDYEKAAEFYKEALRNDSSC 518
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
498-555 |
2.09e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.18 E-value: 2.09e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 564386400 498 NGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQV 555
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRY 58
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
200-303 |
2.12e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.22 E-value: 2.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 200 LFNLASQYSANEMYAEALNTYQVIVKNKmfSNAGRLKVNMGNIYLKQRNYSKAIKFYRMALDQIPSvhkemRIKIMQNIG 279
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLD--PDNADALLDLAEALLAAGDTEEAEELLERALALDPD-----NPEALYLLG 92
|
90 100
....*....|....*....|....
gi 564386400 280 ITFIKTGQYSDAINSFEHIMSMAP 303
Cdd:COG4235 93 LAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
485-518 |
2.85e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.89 E-value: 2.85e-03
10 20 30
....*....|....*....|....*....|....
gi 564386400 485 PSALTNKGNTVFANGDYEKAAEFYKEALRNDSSC 518
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
584-690 |
3.19e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 39.90 E-value: 3.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 584 PTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKWQLMVAS 663
Cdd:COG4785 70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGI 149
|
90 100
....*....|....*....|....*..
gi 564386400 664 CFRRSGNYQKALDTYKEIHRKFPENVE 690
Cdd:COG4785 150 ALYYLGRYELAIADLEKALELDPNDPE 176
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
458-529 |
3.39e-03 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 39.22 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 458 SFLYY-------LENEFAQA--SSYADLAVSSDRYNPS-ALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGL 527
Cdd:CHL00033 35 AFTYYrdgmsaqSEGEYAEAlqNYYEAMRLEIDPYDRSyILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114
|
..
gi 564386400 528 TY 529
Cdd:CHL00033 115 IC 116
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
490-545 |
3.96e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.55 E-value: 3.96e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 564386400 490 NKGNTVFANGDYEKAAEFYKEALRNDSS---CTEALYNIGLTYKKLNRLDEALDSFLKL 545
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAA 60
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
520-544 |
4.60e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.47 E-value: 4.60e-03
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
194-265 |
5.34e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.28 E-value: 5.34e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564386400 194 DLTYSVLFNLASQYSANEMYAEALNTYQVIVKNKMFSN-AGRLKVNMGNIYLKQRNYSKAIKFYRMALDQIPS 265
Cdd:COG1729 27 PLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkAPDALLKLGLSYLELGDYDKARATLEELIKKYPD 99
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
213-304 |
7.42e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.89 E-value: 7.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 213 YAEALNTY-QVIVKNKMFSNAGRLKVNMGNIYLKQRNYSKAIKFYRMALDQIPSvhKEMRIKIMQNIGITFIKTGQYSDA 291
Cdd:COG1729 9 YDEAIAAFkAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPD--SPKAPDALLKLGLSYLELGDYDKA 86
|
90
....*....|...
gi 564386400 292 INSFEHIMSMAPS 304
Cdd:COG1729 87 RATLEELIKKYPD 99
|
|
| OM_YfiO |
TIGR03302 |
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ... |
485-647 |
7.99e-03 |
|
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274513 [Multi-domain] Cd Length: 235 Bit Score: 38.69 E-value: 7.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 485 PSALTNKGNTVFANGDYEKAAEFYKEALRN--DSSCTE-ALYNIGLTYKKLNRLDEAL---DSFLKLHAILRNSAQVLCQ 558
Cdd:TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRypFSPYAEqAQLDLAYAYYKSGDYAEAIaaaDRFIRLHPNHPDADYAYYL 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564386400 559 IANV-YELMEDPN-------QAIEWLMQLISVVPtDSQ----ALSKLGELYDSEGDKS-QAFQYYYESYRYfPSNIEVIE 625
Cdd:TIGR03302 113 RGLSnYNQIDRVDrdqtaarEAFEAFQELIRRYP-NSEyapdAKKRMDYLRNRLAGKElYVARFYLKRGAY-VAAINRFQ 190
|
170 180
....*....|....*....|..
gi 564386400 626 WLGAYYIDTQFCEKAIQYFERA 647
Cdd:TIGR03302 191 TVVENYPDTPATEEALARLVEA 212
|
|
| |
