NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|564381335|ref|XP_006250161|]
View 

centromere protein L isoform X1 [Rattus norvegicus]

Protein Classification

CENP-L domain-containing protein( domain architecture ID 10586779)

CENP-L domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CENP-L pfam13092
Kinetochore complex Sim4 subunit Fta1; CENP-L is one of the components that assembles onto the ...
 185-329 5.42e-54

Kinetochore complex Sim4 subunit Fta1; CENP-L is one of the components that assembles onto the CENP-A-nucleosome distal (CAD) centromere. The centromere, which is the basic element of chromosome inheritance, is epigenetically determined in mammals. CENP-A, the centromere-specific histone H3 variant, assembles an array of nucleosomes and it is this that seems to be the prime candidate for specifying centromere identity. CENP-A nucleosomes directly recruit a proximal CENP-A nucleosome associated complex (NAC) comprised of CENP-M, CENP-N and CENP-T, CENP-U(50), CENP-C and CENP-H. Assembly of the CENP-A NAC at centromeres is dependent on CENP-M, CENP-N and CENP-T. Additionally, there are seven other subunits which make up the CENP-A-nucleosome distal (CAD) centromere, CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R and CENP-S, also assembling on the CENP-A NAC. Fta1 is the equivalent component of the fission yeast Sim4 complex. The centromere, which is the basic element of chromosome inheritance, is epigenetically determined in mammals.


:

Pssm-ID: 432969  Cd Length: 158  Bit Score: 175.09  E-value: 5.42e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564381335  185 DFTCLPLFLAHGAESNTSLIGGWFQKTFDCCFSPLAISAFNLSWMAAMWTACKMD------HYMATTEFFWSVPCSPQSL 258
Cdd:pfam13092   1 GFTHLPLLLTRGPASLRQAVISWLSTTFDCRISPLRLPSSFLCWALEMWIGCLGEsdrgpvIKDLQLTLSFSVPPVAPGL 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564381335  259 -DISYAIHPEDAKALWDSVHKTP-GEVTQEEVDLFMNCLYSHFHRHFRIHLS--ATRLVRVSTSVASAHTDGKIK 329
Cdd:pfam13092  81 kSIDVTIPREDLKRFWRSGHDSSeDEVDDEEVQPFMAALSSYLKRHLALDLShpAVRLSKVACGGFVLGEEGRLK 155
 
Name Accession Description Interval E-value
CENP-L pfam13092
Kinetochore complex Sim4 subunit Fta1; CENP-L is one of the components that assembles onto the ...
 185-329 5.42e-54

Kinetochore complex Sim4 subunit Fta1; CENP-L is one of the components that assembles onto the CENP-A-nucleosome distal (CAD) centromere. The centromere, which is the basic element of chromosome inheritance, is epigenetically determined in mammals. CENP-A, the centromere-specific histone H3 variant, assembles an array of nucleosomes and it is this that seems to be the prime candidate for specifying centromere identity. CENP-A nucleosomes directly recruit a proximal CENP-A nucleosome associated complex (NAC) comprised of CENP-M, CENP-N and CENP-T, CENP-U(50), CENP-C and CENP-H. Assembly of the CENP-A NAC at centromeres is dependent on CENP-M, CENP-N and CENP-T. Additionally, there are seven other subunits which make up the CENP-A-nucleosome distal (CAD) centromere, CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R and CENP-S, also assembling on the CENP-A NAC. Fta1 is the equivalent component of the fission yeast Sim4 complex. The centromere, which is the basic element of chromosome inheritance, is epigenetically determined in mammals.


Pssm-ID: 432969  Cd Length: 158  Bit Score: 175.09  E-value: 5.42e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564381335  185 DFTCLPLFLAHGAESNTSLIGGWFQKTFDCCFSPLAISAFNLSWMAAMWTACKMD------HYMATTEFFWSVPCSPQSL 258
Cdd:pfam13092   1 GFTHLPLLLTRGPASLRQAVISWLSTTFDCRISPLRLPSSFLCWALEMWIGCLGEsdrgpvIKDLQLTLSFSVPPVAPGL 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564381335  259 -DISYAIHPEDAKALWDSVHKTP-GEVTQEEVDLFMNCLYSHFHRHFRIHLS--ATRLVRVSTSVASAHTDGKIK 329
Cdd:pfam13092  81 kSIDVTIPREDLKRFWRSGHDSSeDEVDDEEVQPFMAALSSYLKRHLALDLShpAVRLSKVACGGFVLGEEGRLK 155
PRK00711 PRK00711
D-amino acid dehydrogenase;
206-246 5.70e-03

D-amino acid dehydrogenase;


Pssm-ID: 234819 [Multi-domain]  Cd Length: 416  Bit Score: 38.63  E-value: 5.70e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 564381335 206 GW-FQKTfdccfSPLAI----SAFNLSWMAAMWTACKMDHYMATTE 246
Cdd:PRK00711  66 KWlFQRH-----APLAIrpdgDPFQLRWMWQMLRNCTASRYAVNKS 106
 
Name Accession Description Interval E-value
CENP-L pfam13092
Kinetochore complex Sim4 subunit Fta1; CENP-L is one of the components that assembles onto the ...
 185-329 5.42e-54

Kinetochore complex Sim4 subunit Fta1; CENP-L is one of the components that assembles onto the CENP-A-nucleosome distal (CAD) centromere. The centromere, which is the basic element of chromosome inheritance, is epigenetically determined in mammals. CENP-A, the centromere-specific histone H3 variant, assembles an array of nucleosomes and it is this that seems to be the prime candidate for specifying centromere identity. CENP-A nucleosomes directly recruit a proximal CENP-A nucleosome associated complex (NAC) comprised of CENP-M, CENP-N and CENP-T, CENP-U(50), CENP-C and CENP-H. Assembly of the CENP-A NAC at centromeres is dependent on CENP-M, CENP-N and CENP-T. Additionally, there are seven other subunits which make up the CENP-A-nucleosome distal (CAD) centromere, CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R and CENP-S, also assembling on the CENP-A NAC. Fta1 is the equivalent component of the fission yeast Sim4 complex. The centromere, which is the basic element of chromosome inheritance, is epigenetically determined in mammals.


Pssm-ID: 432969  Cd Length: 158  Bit Score: 175.09  E-value: 5.42e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564381335  185 DFTCLPLFLAHGAESNTSLIGGWFQKTFDCCFSPLAISAFNLSWMAAMWTACKMD------HYMATTEFFWSVPCSPQSL 258
Cdd:pfam13092   1 GFTHLPLLLTRGPASLRQAVISWLSTTFDCRISPLRLPSSFLCWALEMWIGCLGEsdrgpvIKDLQLTLSFSVPPVAPGL 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564381335  259 -DISYAIHPEDAKALWDSVHKTP-GEVTQEEVDLFMNCLYSHFHRHFRIHLS--ATRLVRVSTSVASAHTDGKIK 329
Cdd:pfam13092  81 kSIDVTIPREDLKRFWRSGHDSSeDEVDDEEVQPFMAALSSYLKRHLALDLShpAVRLSKVACGGFVLGEEGRLK 155
PRK00711 PRK00711
D-amino acid dehydrogenase;
206-246 5.70e-03

D-amino acid dehydrogenase;


Pssm-ID: 234819 [Multi-domain]  Cd Length: 416  Bit Score: 38.63  E-value: 5.70e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 564381335 206 GW-FQKTfdccfSPLAI----SAFNLSWMAAMWTACKMDHYMATTE 246
Cdd:PRK00711  66 KWlFQRH-----APLAIrpdgDPFQLRWMWQMLRNCTASRYAVNKS 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH