|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
66-329 |
3.14e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 3.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 66 EKQRKELQLLIGELKDRDKEL----------NDMVAVHQRQL----LSWEEDRQKVLTLEERCSKLEGELHKRTDIIKSL 131
Cdd:TIGR02168 221 ELRELELALLVLRLEELREELeelqeelkeaEEELEELTAELqeleEKLEELRLEVSELEEEIEELQKELYALANEISRL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 132 MKKVKTLESNQMECQTALQKTQQQLQEMAQKATHSALLSEDLEARNENLSSTLVDLSAQVGQLQAREQALTTMIKLKDKD 211
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 212 IIEAvnhisdcSGKFKLLEHALRDAKMAETCVVKEKQDYKQKLKALRIEVNKLREDLNEKttENNEQREEIIRLKQEKSC 291
Cdd:TIGR02168 381 LETL-------RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEELEE 451
|
250 260 270
....*....|....*....|....*....|....*...
gi 564379397 292 LHDELIFTVEREKRKDELLDIAKSKQDRTNSELQNLRQ 329
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
51-329 |
1.01e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 1.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 51 YRRQNIGSEVESSTIEKQRKELQLLIGELKDRDKELNDMVAVHQRQLLSWEEDRQKVLTLEERCSKLEGELHKRTDIIKS 130
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 131 LMKKVKTLESNQMECQTALQKTQQQLQEMAQKATHSALLSEDLEARNENLSSTLVDLSAQVGQLQAREQALTTMIKLKDK 210
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 211 DIIEAVNHISDcsgkfklLEHALRDAKMAETCVVKEKQDYKQKLKALRIEVNKLREDLNEKTTENNEQREEIIRLKQEKS 290
Cdd:COG1196 394 AAAELAAQLEE-------LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
|
250 260 270
....*....|....*....|....*....|....*....
gi 564379397 291 CLHDELIFTVEREKRKDELLDIAKSKQDRTNSELQNLRQ 329
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG 505
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
47-321 |
2.24e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 2.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 47 STTLYRRQNI----------GSEVESSTIEKQ--RKELQLLIGELKDRDKELNDMVAVHQRQLLSWEEDRQKVLTLEERC 114
Cdd:TIGR02168 670 SSILERRREIeeleekieelEEKIAELEKALAelRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 115 SKLEGELHKRTDIIKSLMKKVKTLESNQMECQTALQKTQQQLQEMAQKAthsallsEDLEARNENLSSTLVDLSAQVGQL 194
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL-------KALREALDELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 195 QAREQALTTMIKLKDKDIIEAVNHISDCSGKFKLLEHALRDAKMAETCVVKEKQDYKQKLKALRIEVNKLREDLNEKTTE 274
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 564379397 275 NNEQREEIIRLKQEksclHDELiftveREKRKDELLDIAKSKQDRTN 321
Cdd:TIGR02168 903 LRELESKRSELRRE----LEEL-----REKLAQLELRLEGLEVRIDN 940
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
52-329 |
1.94e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 1.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 52 RRQNIGSEVESSTIEKQRKELQLLIGELKDRDKELNDMVAVHQRQLLSWEEDRQkvLTLEERCSKLEGELHKRTDIIKSL 131
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ--LRVKEKIGELEAEIASLERSIAEK 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 132 MKKVKTLESNQMECQTALQKTQQQLQEMAQKATHSALLSEDLEARNENLSSTLVDLSAQVGQLQAREQALTTMIKLKDKD 211
Cdd:TIGR02169 314 ERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 212 IIEAVNHISDCSGKFKLLEHALRDAKMaetcvvkEKQDYKQKLKALRIEVNKLREDLNEKTTENNEQREEIIRLKQeksc 291
Cdd:TIGR02169 394 LEKLKREINELKRELDRLQEELQRLSE-------ELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAA---- 462
|
250 260 270
....*....|....*....|....*....|....*...
gi 564379397 292 lhdeliftvEREKRKDELLDIaKSKQDRTNSELQNLRQ 329
Cdd:TIGR02169 463 ---------DLSKYEQELYDL-KEEYDRVEKELSKLQR 490
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
62-316 |
5.55e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 5.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 62 SSTIEKQRKELQLLIGELKDRDKELNDMVAVHQRQLLSWEEDRQKVLTLEERCSKLEGELHKRTDIIKSLMKKVKTLESN 141
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 142 QMECQTALQKTQQQLQEMAQKATHSALLS----EDLEARNENLSSTLVDLSAQVGQLQAREQALTTmiklkdkdiieavn 217
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSpedfLDAVRRLQYLKYLAPARREQAEELRADLAELAA-------------- 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 218 hisdcsgkfklLEHALRDAKMAETCVVKEKQDYKQKLKALRIEVNKLREDLNEKTTENNEQREEIIRLKQEKSCLHDELI 297
Cdd:COG4942 165 -----------LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
250
....*....|....*....
gi 564379397 298 FTVEREKRKDELLDIAKSK 316
Cdd:COG4942 234 AEAAAAAERTPAAGFAALK 252
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
96-329 |
2.81e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 2.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 96 QLLSWEEDRQKVLTLEERCSKLEGELHKRTDIIKSLMKKVKTLESNQMECQTALQKTQQQLQEMAQKAthsALLSEDLEA 175
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAEL---AELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 176 RNENLSSTLVDLSAQVGQLQAREQALTTMIKLKDKDIIEAVNhisdcsgKFKLLEHALR-DAKMAEtcvvkEKQDYKQKL 254
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVR-------RLQYLKYLAPaRREQAE-----ELRADLAEL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564379397 255 KALRIEVNKLREDLNEKTTENNEQREEIIRLKQEKSCLHDELiftVEREKRKDELLDIAKSKQDRTNSELQNLRQ 329
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLARL---EKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
125-370 |
3.63e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 3.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 125 TDIIKSLMKKVKTLESnQMECQTALQKTQQQLqemaqKATHSALLSEDLEARNENLSStlvdLSAQVGQLQAREQALTTM 204
Cdd:TIGR02168 192 EDILNELERQLKSLER-QAEKAERYKELKAEL-----RELELALLVLRLEELREELEE----LQEELKEAEEELEELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 205 IKLKDKDIIEAVNHISDCSGKFKLLEHALRDAKMAETCVVKEKQDYKQKLKALRIEV--------------NKLREDLNE 270
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLeeleaqleelesklDELAEELAE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 271 KTTENNEQREEIIRLKQEKSCLHDELIFTVEREKRKDELLDIAKSKQDRTNSELQNLRQIYVKQQSDLQFLNFNVENSQE 350
Cdd:TIGR02168 342 LEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421
|
250 260
....*....|....*....|
gi 564379397 351 LIQIHGLKMEEPKALECSRD 370
Cdd:TIGR02168 422 EIEELLKKLEEAELKELQAE 441
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
125-366 |
3.73e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 3.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 125 TDIIKSLMKKVKTLESnqmECQTALQKTQQQLQEMAQKATHSALLSEDLEARNENLSSTLVDLSAQVGQLQAREQALTTM 204
Cdd:COG1196 192 EDILGELERQLEPLER---QAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 205 IKLKDKDIIEAVNHISDCSGKFKLLEHALRDAKMAETCVVKEKQDYKQKLKALRIEVNKLREDLNEKTTENNEQREEIIR 284
Cdd:COG1196 269 LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 285 LKQEKSCLHDELIFTVEREKRKD-ELLDIAKSKQDRTNSELQNLRQIYVKQQSDLQFLNFNVENSQELIQIHGLKMEEPK 363
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEaELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
...
gi 564379397 364 ALE 366
Cdd:COG1196 429 ALA 431
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
65-324 |
3.13e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 3.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 65 IEKQRKELQLLIGELKDRDKELNDMvavhqRQLLSWEEdrQKVLTLEERCSKLEGELHKRTDIIKSLMKKVKTLESNQME 144
Cdd:TIGR02169 683 LEGLKRELSSLQSELRRIENRLDEL-----SQELSDAS--RKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 145 CQTALQKTQQQLQEMAQKATHSALLSEDLEAR------------NENLSSTLVDLSAQVGQLQAREQALTTMIKLKDKDI 212
Cdd:TIGR02169 756 VKSELKELEARIEELEEDLHKLEEALNDLEARlshsripeiqaeLSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 213 IEAVNHISDCSGKFKLLEHALRDAKmaetcvvKEKQDYKQKLKALRIEVNKLREDLNEKTTENNEQREEIIRLKQEKscl 292
Cdd:TIGR02169 836 QELQEQRIDLKEQIKSIEKEIENLN-------GKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI--- 905
|
250 260 270
....*....|....*....|....*....|..
gi 564379397 293 hDELIFTVEREKRKDELLDIAKSKQDRTNSEL 324
Cdd:TIGR02169 906 -EELEAQIEKKRKRLSELKAKLEALEEELSEI 936
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
85-288 |
5.09e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 5.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 85 ELNDMVAVHQRQLLSWEeDRQKVLTLEERCSKLEGELHKRTDIIKSLMKKVKTLESNQMECQtALQKTQQQLQEMAQkaT 164
Cdd:COG4913 591 EKDDRRRIRSRYVLGFD-NRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQ-RLAEYSWDEIDVAS--A 666
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 165 HSALlsEDLEARNENLSSTLVDLSA---QVGQLQAREQALTTMIKLKDKDIIEAVNHISDCSGKFKLLEHALRDAkmAET 241
Cdd:COG4913 667 EREI--AELEAELERLDASSDDLAAleeQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAA--EDL 742
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 564379397 242 CVVKEKQDYKQKLKALRIE--VNKLREDLNEK----TTENNEQREEIIRLKQE 288
Cdd:COG4913 743 ARLELRALLEERFAAALGDavERELRENLEERidalRARLNRAEEELERAMRA 795
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
61-378 |
9.22e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.88 E-value: 9.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 61 ESSTIEKQrkeLQLLIGELKDRDKELNdmVAVHQRQLLsWEEDRQKVLTLEErcskLEGELHKRTDIIKSLMKKVKTLES 140
Cdd:pfam15921 371 ESGNLDDQ---LQKLLADLHKREKELS--LEKEQNKRL-WDRDTGNSITIDH----LRRELDDRNMEVQRLEALLKAMKS 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 141 nqmECQTALQKTQQQLQEMAQKATHSALLSEDLEARNENLSSTLVDLSAQVGQLQAREQA---LTTMIKLKDKdIIEAVN 217
Cdd:pfam15921 441 ---ECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTvsdLTASLQEKER-AIEATN 516
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 218 -HISDCSGKFkllehalrDAKMAETCVVKEKQDYkqkLKALRIEVNKLREDLNEKTTENNEQREEIIRLKQ--------- 287
Cdd:pfam15921 517 aEITKLRSRV--------DLKLQELQHLKNEGDH---LRNVQTECEALKLQMAEKDKVIEILRQQIENMTQlvgqhgrta 585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 288 -----EKSCLHDELiftverEKRKDEL--LDIAKSKQDRTNSELQnlrqiyvKQQSDLQFLNFNVEN--SQELIQIHGLK 358
Cdd:pfam15921 586 gamqvEKAQLEKEI------NDRRLELqeFKILKDKKDAKIRELE-------ARVSDLELEKVKLVNagSERLRAVKDIK 652
|
330 340
....*....|....*....|
gi 564379397 359 MEEPKALECSRDmCLSDLDN 378
Cdd:pfam15921 653 QERDQLLNEVKT-SRNELNS 671
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
61-203 |
1.88e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 1.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 61 ESSTIEKQRKELQLLIGELKDRDKELNDMVAvHQRQLLSWEEDRQKVLTLEERCSKLEGELHKrtdiIKSLMKKVKTLES 140
Cdd:COG4717 96 ELEELEEELEELEAELEELREELEKLEKLLQ-LLPLYQELEALEAELAELPERLEELEERLEE----LRELEEELEELEA 170
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564379397 141 NQMECQTALQKTQQQLQEMAQKATHSALLS-EDLEARNENLSSTLVDLSAQVGQLQAREQALTT 203
Cdd:COG4717 171 ELAELQEELEELLEQLSLATEEELQDLAEElEELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
146-353 |
2.23e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 2.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 146 QTALQKTQQQLQEMAQKATHSALLSEDLEARNENLSSTLVDLSAQVGQLQAREQALTTMIKLKDKDIIEAVNHISDCSGK 225
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 226 FKLLEHAL--------RDAKMAETCVVKEKQDYKQKLKALRIeVNKLREDLNEKTTENNEQREEIIRLKQEKSCLHDELI 297
Cdd:COG4942 99 LEAQKEELaellralyRLGRQPPLALLLSPEDFLDAVRRLQY-LKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 564379397 298 FTVEREKRKDELLDIAKSKQDRTnseLQNLRQIYVKQQSDLQFLNFNVENSQELIQ 353
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKL---LARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
64-278 |
2.71e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 64 TIEKQRKELQLLIGELKDRDKELNDMVAVHQRQLLSWE------EDRQKVLTLEERCSKLEGELhkrtdiikslmkkvkt 137
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQERREALQrlaeysWDEIDVASAEREIAELEAEL---------------- 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 138 lesnqmecqTALQKTQQQLQEMAQKAthsallsEDLEARNENLSSTLVDLSAQVGQLQAREQALTTMIKLKdKDIIEAVN 217
Cdd:COG4913 678 ---------ERLDASSDDLAALEEQL-------EELEAELEELEEELDELKGEIGRLEKELEQAEEELDEL-QDRLEAAE 740
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564379397 218 HISDcSGKFKLLEHALRDAkMAETCVVKEKQDYKQKLKALRIEVNKLREDLNEKTTENNEQ 278
Cdd:COG4913 741 DLAR-LELRALLEERFAAA-LGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
128-325 |
2.74e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 2.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 128 IKSLMKKVKTLESNQMECQTALQKTQQQLQEMAQKATHsalLSEDLEARNENLSSTLVDLSAQVGQLQAREQALTTMIKL 207
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNE---LQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 208 -----KDKDIIEAV---NHISDCSGKFKLLEHAL-RDAKMaetcvVKEKQDYKQKLKALRIEVNKLREDLNEKTTENNEQ 278
Cdd:COG3883 95 lyrsgGSVSYLDVLlgsESFSDFLDRLSALSKIAdADADL-----LEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 564379397 279 REEIIRLKQEKSCLHDELIFTVEREKRKDELLDIAKSKQDRTNSELQ 325
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
65-297 |
3.53e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 3.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 65 IEKQRKELQLL--IGELKDRDKELNDMVAVHQ--RQLLSWEEDRQKVLTLEERCSKLEGELhkrtdiikslmkkvKTLES 140
Cdd:COG4913 244 LEDAREQIELLepIRELAERYAAARERLAELEylRAALRLWFAQRRLELLEAELEELRAEL--------------ARLEA 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 141 NQMECQTALQKTQQQLQEM-AQKATHSALLSEDLEARNENLSSTLVDLSAQVGQLQAreqaLTTMIKLKDKDIIEAvnhi 219
Cdd:COG4913 310 ELERLEARLDALREELDELeAQIRGNGGDRLEQLEREIERLERELEERERRRARLEA----LLAALGLPLPASAEE---- 381
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564379397 220 sdcsgkFKLLEHALRDAKmaetcvvkekQDYKQKLKALRIEVNKLREDLNEKTTENNEQREEIIRLKQEKSCLHDELI 297
Cdd:COG4913 382 ------FAALRAEAAALL----------EALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLL 443
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
61-217 |
3.53e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 3.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 61 ESSTIEKQRKELQLLIGELKDRDKELNDmVAVHQRQLLSWEEDRQKVL-------TLEERCSKLEGELHKRTDIIKSLMK 133
Cdd:COG4913 635 ALEAELDALQERREALQRLAEYSWDEID-VASAEREIAELEAELERLDassddlaALEEQLEELEAELEELEEELDELKG 713
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 134 KVKTLESNQMECQTALQKTQQQLQEMAQKAthSALLSEDLEARNENLSSTlvDLSAQVG-QLQAREQALTTMIKLKDKDI 212
Cdd:COG4913 714 EIGRLEKELEQAEEELDELQDRLEAAEDLA--RLELRALLEERFAAALGD--AVERELReNLEERIDALRARLNRAEEEL 789
|
....*
gi 564379397 213 IEAVN 217
Cdd:COG4913 790 ERAMR 794
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
63-353 |
3.73e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 3.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 63 STIEKQRKELQLLIGELKDRDKELNDMVAVHQRQLLSWEEDRQKVLTLEERCSKLEGELHKRTDIIKSLMKKVKTLESNQ 142
Cdd:TIGR04523 398 SKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSI 477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 143 MECQTALQKTQQQLQEMAQKAthsallsEDLEARNENLSSTLVDLSAQVGQLQAREQALTTMIKLKDKDIIEAVNHISdc 222
Cdd:TIGR04523 478 NKIKQNLEQKQKELKSKEKEL-------KKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELN-- 548
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 223 SGKFKLLEHALRDAKMAETcvvKEKQDYKQKLKALRIEVNKLREDLNEKTTENNEQREEIIRLKQEKSCLHDELIFTVER 302
Cdd:TIGR04523 549 KDDFELKKENLEKEIDEKN---KEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE 625
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 564379397 303 EKRKDELLDIAKSKQDRTNSELQNLRQIYVKQQSDLQFLNFNVENSQELIQ 353
Cdd:TIGR04523 626 NEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKID 676
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
61-361 |
6.68e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 6.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 61 ESSTIEKQRKELQLLIGELKDRDKELNDMVAVHQRQLLSWEEDRQKVLtleERCSKLEGELHKRTDIIKSLMKKVKTLES 140
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLL---AEAGLDDADAEAVEARREELEDRDEELRD 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 141 NQMECQTALQKTQQQLQEMAQKAthsallsEDLEARNEnlsstlvdlsaqvgqlQAREQALTTmiklkDKDIIEAVNHIS 220
Cdd:PRK02224 329 RLEECRVAAQAHNEEAESLREDA-------DDLEERAE----------------ELREEAAEL-----ESELEEAREAVE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 221 DCSGKFKLLEHALRDAKMAETCVVKEKQDYKQKLKALRIEVNKLREDLNEKTTENNEQREEII---RLKQEKSC------ 291
Cdd:PRK02224 381 DRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEeaeALLEAGKCpecgqp 460
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564379397 292 LHDELIFTV--EREKRKDEL---LDIAKSKQDRTNSELQNLRQIyVKQQSDLQFLNFNVENSQELIQIHGLKMEE 361
Cdd:PRK02224 461 VEGSPHVETieEDRERVEELeaeLEDLEEEVEEVEERLERAEDL-VEAEDRIERLEERREDLEELIAERRETIEE 534
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
84-364 |
7.06e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 42.82 E-value: 7.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 84 KELNDMVAVHQRQLLSWEEDRQKVL-TLEERCSKLEGELH----KRTDIIKSLMKKVKtlESNQMECQtaLQKTQQQLQ- 157
Cdd:pfam07111 140 RELEEIQRLHQEQLSSLTQAHEEALsSLTSKAEGLEKSLNsletKRAGEAKQLAEAQK--EAELLRKQ--LSKTQEELEa 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 158 -----EMAQKATHSALLSE----DLEARNENLSSTL-------VDLSAQVGQLQAREQALTTMIKLKDKDIIEAVNHISD 221
Cdd:pfam07111 216 qvtlvESLRKYVGEQVPPEvhsqTWELERQELLDTMqhlqedrADLQATVELLQVRVQSLTHMLALQEEELTRKIQPSDS 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 222 CSGKF----KLLEHALRDAKMAETCVVKEKQ-DYKQKLKALRIEVnklrEDLNEKTTENNEQREEIIRLKQEKSCLhdel 296
Cdd:pfam07111 296 LEPEFpkkcRSLLNRWREKVFALMVQLKAQDlEHRDSVKQLRGQV----AELQEQVTSQSQEQAILQRALQDKAAE---- 367
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564379397 297 iFTVEREKRKDELLDIAKSKQDRTNSELQNlrqiyVKQQSDLQFLNFNVENSQELIQIHGLKMEEPKA 364
Cdd:pfam07111 368 -VEVERMSAKGLQMELSRAQEARRRQQQQT-----ASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVA 429
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
22-391 |
7.75e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.79 E-value: 7.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 22 TYGVSEVTRSWHQLSVRERASSMNPSTTLYRRQNIGSEVESSTIEKQR---------KELQL-------LIGELKDRDKE 85
Cdd:pfam05483 260 TFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRsmstqkaleEDLQIatkticqLTEEKEAQMEE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 86 LNDMVAVHQrqlLSWEEDRQKVLTLEERCSKLEGELHKRTDIIKSLmkkvkTLEsnqmecqtaLQKTQQQLQEMAQKATH 165
Cdd:pfam05483 340 LNKAKAAHS---FVVTEFEATTCSLEELLRTEQQRLEKNEDQLKII-----TME---------LQKKSSELEEMTKFKNN 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 166 SALLSEDLE---ARNENLSSTLVDLSAQVGQLQAREQALTTMIKLKDKDIIEavnhisdcsgkfklLEHALRDAKMAETC 242
Cdd:pfam05483 403 KEVELEELKkilAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHD--------------LEIQLTAIKTSEEH 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 243 VVKEKQDYKQKLKALRIEVNKLREDLNEKTTENNEQREEIIRLKQEKSCLHDELIFTVEREKRKDELLDIAKSKQDRTNS 322
Cdd:pfam05483 469 YLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRD 548
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 323 ELQNLRQIYVKQQSDLQF-LNFNVENSQELIQIHGLKMEEPKALECSRDMCLSDLDNNYPKIDIKRERNQ 391
Cdd:pfam05483 549 ELESVREEFIQKGDEVKCkLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENK 618
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
65-281 |
9.99e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 9.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 65 IEKQRKEL--------QLLIGELKDRDKELNDMvavhQRQLLSWEEDRQKVLTLEERCSKLEGELHKRTDIIKSLMKKVK 136
Cdd:COG4717 51 LEKEADELfkpqgrkpELNLKELKELEEELKEA----EEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 137 TLESNQmecqtALQKTQQQLQEMAQKAthsallsEDLEARNENLSSTLVDLSAQVGQLQAREQALTTMIKLKDKDIIEAv 216
Cdd:COG4717 127 LLPLYQ-----ELEALEAELAELPERL-------EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEE- 193
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564379397 217 nhisdcsgkfklLEHALRDAKMAEtcvvKEKQDYKQKLKALRIEVNKLREDLNEKTTENNEQREE 281
Cdd:COG4717 194 ------------LQDLAEELEELQ----QRLAELEEELEEAQEELEELEEELEQLENELEAAALE 242
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
146-354 |
2.11e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 146 QTALQKTQQQLQEMAQKatHSALlseDLEARNENLSSTLVDLSAQVGQLQAREQALTTMIKLKDKDIIEAVNHISDcsgk 225
Cdd:COG3206 188 RKELEEAEAALEEFRQK--NGLV---DLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPE---- 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 226 fkllehALRDAKMaetcvvkekQDYKQKLKALRIEVNKLREDLnektTENNEQreeIIRLKQEKSCLHDELiftverEKR 305
Cdd:COG3206 259 ------LLQSPVI---------QQLRAQLAELEAELAELSARY----TPNHPD---VIALRAQIAALRAQL------QQE 310
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 564379397 306 KDELLDIAKSKQDRTNSELQNLRQIYVKQQSDLQFLNfnvENSQELIQI 354
Cdd:COG3206 311 AQRILASLEAELEALQAREASLQAQLAQLEARLAELP---ELEAELRRL 356
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
65-243 |
2.69e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 65 IEKQRKELQlliGELKDRDKELNDMvavhQRQLLsweedrQKVLTLEERCSKLEGELHKRTDIIKSLMKKVKTLESNQME 144
Cdd:PRK12704 66 IHKLRNEFE---KELRERRNELQKL----EKRLL------QKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEE 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 145 CQTALQKTQQQLQEMAQkathsalLSEDlEARNENLSSTLVDLSAQVGQL------QAREQAlttmiKLKDKDIIeaVNH 218
Cdd:PRK12704 133 LEELIEEQLQELERISG-------LTAE-EAKEILLEKVEEEARHEAAVLikeieeEAKEEA-----DKKAKEIL--AQA 197
|
170 180
....*....|....*....|....*
gi 564379397 219 ISDCSGkfkllEHAlrdakmAETCV 243
Cdd:PRK12704 198 IQRCAA-----DHV------AETTV 211
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
110-370 |
3.53e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.79 E-value: 3.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 110 LEERCSKLEGELHKRTDIIKSLMKKVKTLESNQMECQTALQKTQQQLQEMAQKATHSALLSEDLEA---RNENLSSTLVD 186
Cdd:PRK02224 204 LHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAEterEREELAEEVRD 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 187 LSAQVGQLQAREQALTTMIKLKDKDIIEAVNHISDCSGKFKLLEHALRDAKMAETCVVKEKQDYKQKLKALRIEVNKLRE 266
Cdd:PRK02224 284 LRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELRE 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 267 DLNEKTTENNEQREEIIRLKQEKSCLHDELIFTVEREKRKDELLDIAKSKQDRTNSELQNLRQIYVKQQSDLQFLNFNVE 346
Cdd:PRK02224 364 EAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVE 443
|
250 260
....*....|....*....|....
gi 564379397 347 NSQELiqihglkMEEPKALECSRD 370
Cdd:PRK02224 444 EAEAL-------LEAGKCPECGQP 460
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
92-327 |
3.63e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.59 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 92 VHQRQLLS-WEEDRQKVLTLEERCSKLEGELHKRTDIIKSLMKKVKTLESNQMECQTALQKTQQQL-QEMAQKATHSALL 169
Cdd:pfam12128 227 IRDIQAIAgIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLrTLDDQWKEKRDEL 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 170 SEDLEARNENLSSTLVDLSAQVGQLQAREQALTTMIKLKDKDIIEAVNHISDCSGKFKLLEHALRD---------AKMAE 240
Cdd:pfam12128 307 NGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDvtakynrrrSKIKE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 241 TCV-----VKEKQDYKQKLKALRIEV---------NKLREDLNEKTTENNEQREEII-RLKQEKSCLHDELIF--TVERE 303
Cdd:pfam12128 387 QNNrdiagIKDKLAKIREARDRQLAVaeddlqaleSELREQLEAGKLEFNEEEYRLKsRLGELKLRLNQATATpeLLLQL 466
|
250 260
....*....|....*....|....
gi 564379397 304 KRKDELLDIAKSKQDRTNSELQNL 327
Cdd:pfam12128 467 ENFDERIERAREEQEAANAEVERL 490
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
245-365 |
3.67e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.53 E-value: 3.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 245 KEKQDYKQ-KLKALRIEVNKLREDLnEKttENNEQREEIIRLKQeksclhdeliftveREKRKDELLDIAKSKQDRTNSE 323
Cdd:PRK12704 49 KEAEAIKKeALLEAKEEIHKLRNEF-EK--ELRERRNELQKLEK--------------RLLQKEENLDRKLELLEKREEE 111
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 564379397 324 LQNLRQIYVKQQSDLQFLNFNVENS-----QELIQIHGLKMEEPKAL 365
Cdd:PRK12704 112 LEKKEKELEQKQQELEKKEEELEELieeqlQELERISGLTAEEAKEI 158
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
110-326 |
4.90e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.16 E-value: 4.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 110 LEERCSKLEGELHKRTDIIKSLMKKVKTLESNQMECQTALQKTQQQLQEMAQkathsalLSEDLEARNENLSSTLVDLSA 189
Cdd:pfam01576 157 LEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEK-------AKRKLEGESTDLQEQIAELQA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 190 QV----GQLQAREQALTTMIKLKD----------KDIIEAVNHISDcsgkfklLEHALRDAKMAETCVVKEKQDYKQKLK 255
Cdd:pfam01576 230 QIaelrAQLAKKEEELQAALARLEeetaqknnalKKIRELEAQISE-------LQEDLESERAARNKAEKQRRDLGEELE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 256 ALRI---------------------EVNKLREDLNEKTTENNEQREEiirLKQEKSCLHDELIFTVEREKRKDELLDIAK 314
Cdd:pfam01576 303 ALKTeledtldttaaqqelrskreqEVTELKKALEEETRSHEAQLQE---MRQKHTQALEELTEQLEQAKRNKANLEKAK 379
|
250
....*....|..
gi 564379397 315 SKQDRTNSELQN 326
Cdd:pfam01576 380 QALESENAELQA 391
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
52-366 |
8.39e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 39.64 E-value: 8.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 52 RRQNIGSEV--ESSTIEKQRKELQLLIGELKDRDKELNDMVAVHQRQLLSWEEDRQkvltLEERCSKLEGELHKRTdiIK 129
Cdd:TIGR00606 752 KLQKVNRDIqrLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERK----IAQQAAKLQGSDLDRT--VQ 825
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 130 SLMKKVktlesnqmecqtalQKTQQQLQEMAQKATHSALLSEDLEARNENLSSTLVDLSA---QVGQLQAREQALTTMIK 206
Cdd:TIGR00606 826 QVNQEK--------------QEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSeklQIGTNLQRRQQFEEQLV 891
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 207 LKDKDIIEAVNHISDCSGKFKLLEHALRDAKMAETCVVKEKQDYKQKLKalrIEVNKLREDLNE-----KTTENNEQREE 281
Cdd:TIGR00606 892 ELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQ---DKVNDIKEKVKNihgymKDIENKIQDGK 968
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 282 IIRLKQEKSCLHDELIFTVEREKRKDELLDiaKSKQDRTNSELQNLRQIYVKQQSDLQFLNFNVENSQELIQIHGLKMEE 361
Cdd:TIGR00606 969 DDYLKQKETELNTVNAQLEECEKHQEKINE--DMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQ 1046
|
....*
gi 564379397 362 PKALE 366
Cdd:TIGR00606 1047 MQVLQ 1051
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
37-286 |
9.35e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 39.33 E-value: 9.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 37 VRERASSMNPSTTLYRRQNIGSEVESSTIEKqrkelqlligELKDRDKELNDMvavhqrQLLSWEEDrQKVLTLEERCSK 116
Cdd:pfam15921 567 LRQQIENMTQLVGQHGRTAGAMQVEKAQLEK----------EINDRRLELQEF------KILKDKKD-AKIRELEARVSD 629
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 117 LEGELHKRTDIIKSLMKKVKTLESNQMECQTALQKTQQQLQEMAQKathSALLSEDLEARNENLSSTLVDLSAQVGQLQA 196
Cdd:pfam15921 630 LELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSED---YEVLKRNFRNKSEEMETTTNKLKMQLKSAQS 706
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564379397 197 R-EQALTTMIKLKDKD-------------IIEAVNHISDCSGKFKLLEHALRDAKMAETCVVKEKQDYKQKLKALRIEVN 262
Cdd:pfam15921 707 ElEQTRNTLKSMEGSDghamkvamgmqkqITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKN 786
|
250 260
....*....|....*....|....
gi 564379397 263 KLREDLNEKTTENNEQREEIIRLK 286
Cdd:pfam15921 787 KMAGELEVLRSQERRLKEKVANME 810
|
|
|