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Conserved domains on  [gi|564376272|ref|XP_006248179|]
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keratin-associated protein 13-1-like [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PMG super family cl37545
PMG protein; This family consists of several mouse anagen-specific protein mKAP13 (PMG1 and ...
 1-158 1.22e-22

PMG protein; This family consists of several mouse anagen-specific protein mKAP13 (PMG1 and PMG2). PMG1 and 2 contain characteriztic repeats reminiscent of the keratin-associated proteins (KAPs). Both genes are expressed in growing hair follicles in skin as well as in sebaceous and eccrine sweat glands. Interestingly, expression is also detected in the mammary epithelium where it is limited to the onset of the pubertal growth phase and is independent of ovarian hormones. Their broad, developmentally controlled expression pattern, together with their unique amino acid composition, demonstrate that pmg-1 and pmg-2 constitute a novel KAP gene family participating in the differentiation of all epithelial cells forming the epidermal appendages.


The actual alignment was detected with superfamily member pfam05287:

Pssm-ID: 283053 [Multi-domain]  Cd Length: 180  Bit Score: 88.72  E-value: 1.22e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564376272    1 MSCNCHSDNLST-SFRCCLPISDSSCCSSCSSNLVYTTTSCSPSTCELSSSLHSDCQETCIEPSICQ----------RSC 69
Cdd:pfam05287   1 MSYNCCSGNFSSrSLRNHLHYPVSSCGSSCPSNLSYSTDLCSPSSCQLGSSLRDNCQETCGEPTSCQtsscepctssTSY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564376272   70 VASSPCQMPCYYPRSSTACSPCQGTYDGSMGVGSNSCCSMDYGFRRCYIMGRGSSGFEFLNYGVSGFPLLSYGYRFCYPT 149
Cdd:pfam05287  81 CVPSPCQRSCYSPRTSCVCSPCQTTSAGSLGFGSSSCQSLGYGSNSCQPLGCGSSGFRPLGCLSKGFQSLGYGSSFCRPS 160


                  ....*....
gi 564376272  150 HLAASICQP 158
Cdd:pfam05287 161 YVSSRSYQP 169
 
Name Accession Description Interval E-value
PMG pfam05287
PMG protein; This family consists of several mouse anagen-specific protein mKAP13 (PMG1 and ...
 1-158 1.22e-22

PMG protein; This family consists of several mouse anagen-specific protein mKAP13 (PMG1 and PMG2). PMG1 and 2 contain characteriztic repeats reminiscent of the keratin-associated proteins (KAPs). Both genes are expressed in growing hair follicles in skin as well as in sebaceous and eccrine sweat glands. Interestingly, expression is also detected in the mammary epithelium where it is limited to the onset of the pubertal growth phase and is independent of ovarian hormones. Their broad, developmentally controlled expression pattern, together with their unique amino acid composition, demonstrate that pmg-1 and pmg-2 constitute a novel KAP gene family participating in the differentiation of all epithelial cells forming the epidermal appendages.


Pssm-ID: 283053 [Multi-domain]  Cd Length: 180  Bit Score: 88.72  E-value: 1.22e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564376272    1 MSCNCHSDNLST-SFRCCLPISDSSCCSSCSSNLVYTTTSCSPSTCELSSSLHSDCQETCIEPSICQ----------RSC 69
Cdd:pfam05287   1 MSYNCCSGNFSSrSLRNHLHYPVSSCGSSCPSNLSYSTDLCSPSSCQLGSSLRDNCQETCGEPTSCQtsscepctssTSY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564376272   70 VASSPCQMPCYYPRSSTACSPCQGTYDGSMGVGSNSCCSMDYGFRRCYIMGRGSSGFEFLNYGVSGFPLLSYGYRFCYPT 149
Cdd:pfam05287  81 CVPSPCQRSCYSPRTSCVCSPCQTTSAGSLGFGSSSCQSLGYGSNSCQPLGCGSSGFRPLGCLSKGFQSLGYGSSFCRPS 160


                  ....*....
gi 564376272  150 HLAASICQP 158
Cdd:pfam05287 161 YVSSRSYQP 169
 
Name Accession Description Interval E-value
PMG pfam05287
PMG protein; This family consists of several mouse anagen-specific protein mKAP13 (PMG1 and ...
 1-158 1.22e-22

PMG protein; This family consists of several mouse anagen-specific protein mKAP13 (PMG1 and PMG2). PMG1 and 2 contain characteriztic repeats reminiscent of the keratin-associated proteins (KAPs). Both genes are expressed in growing hair follicles in skin as well as in sebaceous and eccrine sweat glands. Interestingly, expression is also detected in the mammary epithelium where it is limited to the onset of the pubertal growth phase and is independent of ovarian hormones. Their broad, developmentally controlled expression pattern, together with their unique amino acid composition, demonstrate that pmg-1 and pmg-2 constitute a novel KAP gene family participating in the differentiation of all epithelial cells forming the epidermal appendages.


Pssm-ID: 283053 [Multi-domain]  Cd Length: 180  Bit Score: 88.72  E-value: 1.22e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564376272    1 MSCNCHSDNLST-SFRCCLPISDSSCCSSCSSNLVYTTTSCSPSTCELSSSLHSDCQETCIEPSICQ----------RSC 69
Cdd:pfam05287   1 MSYNCCSGNFSSrSLRNHLHYPVSSCGSSCPSNLSYSTDLCSPSSCQLGSSLRDNCQETCGEPTSCQtsscepctssTSY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564376272   70 VASSPCQMPCYYPRSSTACSPCQGTYDGSMGVGSNSCCSMDYGFRRCYIMGRGSSGFEFLNYGVSGFPLLSYGYRFCYPT 149
Cdd:pfam05287  81 CVPSPCQRSCYSPRTSCVCSPCQTTSAGSLGFGSSSCQSLGYGSNSCQPLGCGSSGFRPLGCLSKGFQSLGYGSSFCRPS 160


                  ....*....
gi 564376272  150 HLAASICQP 158
Cdd:pfam05287 161 YVSSRSYQP 169
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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