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Conserved domains on  [gi|564364396|ref|XP_006243403|]
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cell cycle progression protein 1 isoform X10 [Rattus norvegicus]

Protein Classification

YtxH domain-containing protein( domain architecture ID 1904375)

YtxH domain-containing protein similar to Leishmania small hydrophilic endoplasmic reticulum-associated protein (SHERP), which may function in modulating cellular processes related to membrane organization and/or acidification during vector transmission of infective Leishmania

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 275-446 3.19e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 53.79  E-value: 3.19e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396 275 QSSKENLERCWTTTESEKVTFETQNNNLAAENKYLRLSLEKEEKTLSSLQEELRQLKEQI-RLLEDKGTSTQLVRENQVL 353
Cdd:COG1196  238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELaRLEQDIARLEERRRELEER 317

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396 354 KRYLEVEKQKTNSFLNERVTLLEEARVLKRDLERERLTAMALRAELEQLAPRQAQGHAdspsvQRGEKEIVLLQQRLAEL 433
Cdd:COG1196  318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA-----EAEEELEELAEELLEAL 392

                        170
                 ....*....|...
gi 564364396 434 EQKLSFEQQRSDL 446
Cdd:COG1196  393 RAAAELAAQLEEL 405
PLN02328 super family cl33466
lysine-specific histone demethylase 1 homolog
 85-228 1.20e-04

lysine-specific histone demethylase 1 homolog


The actual alignment was detected with superfamily member PLN02328:

Pssm-ID: 215187 [Multi-domain]  Cd Length: 808  Bit Score: 45.37  E-value: 1.20e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396  85 TEVEETTSPEDNVYfGTTSDDSDIVT--LEPPKLEEMGIQEVAIIKDDLNLGSSSSSQYTFCQPEPVFS--SQHSDEESS 160
Cdd:PLN02328   3 TETKEPEDPADNVN-DVVSEASSPETdlSLSPSQSEQNIENDGQNSPETQSPLTELQPSPLPPNTTLDApvSDSQGDESS 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564364396 161 SDD-----TSHEPSPAPRRRRNRKKtvsiseseepLLPEPEDEPSkeTSKRHFSGGLNKCIILALVIAISMGF 228
Cdd:PLN02328  82 SEQqpqnpNSTEPAPPPKKRRRRKR----------FFTEINANPA--FRRHRVRGGLGKEVDVEALIAISVGF 142
GvpP super family cl44178
Gas vesicle protein YhaH [General function prediction only];
488-545 4.97e-03

Gas vesicle protein YhaH [General function prediction only];


The actual alignment was detected with superfamily member COG4980:

Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 36.87  E-value: 4.97e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 564364396 488 VKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTTKNIFDE 545
Cdd:COG4980   36 LKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKEEVEPKIEE 93
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 275-446 3.19e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 53.79  E-value: 3.19e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396 275 QSSKENLERCWTTTESEKVTFETQNNNLAAENKYLRLSLEKEEKTLSSLQEELRQLKEQI-RLLEDKGTSTQLVRENQVL 353
Cdd:COG1196  238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELaRLEQDIARLEERRRELEER 317

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396 354 KRYLEVEKQKTNSFLNERVTLLEEARVLKRDLERERLTAMALRAELEQLAPRQAQGHAdspsvQRGEKEIVLLQQRLAEL 433
Cdd:COG1196  318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA-----EAEEELEELAEELLEAL 392

                        170
                 ....*....|...
gi 564364396 434 EQKLSFEQQRSDL 446
Cdd:COG1196  393 RAAAELAAQLEEL 405
Crescentin pfam19220
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ...
 297-449 4.82e-05

Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.


Pssm-ID: 437057 [Multi-domain]  Cd Length: 401  Bit Score: 46.21  E-value: 4.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396  297 TQNNNLAAENKYLRLSLEKEEKTLSSLQEELRQLKEQIRLLEDKGTSTQLVRENQVlkryleVEKQKTNSFLNERVTLLE 376
Cdd:pfam19220 132 EQNRALEEENKALREEAQAAEKALQRAEGELATARERLALLEQENRRLQALSEEQA------AELAELTRRLAELETQLD 205

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564364396  377 EARVLKRDLERERLTAMALRAELEQLAPRQAQGHADSPSVQRGEKEIvlLQQRLAELEQKLSfeQQRSDLWER 449
Cdd:pfam19220 206 ATRARLRALEGQLAAEQAERERAEAQLEEAVEAHRAERASLRMKLEA--LTARAAATEQLLA--EARNQLRDR 274
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 245-533 6.65e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 46.20  E-value: 6.65e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396   245 RKVHEDELNSVKDYLFQCQQEQEcaldfKTQSSKENLERCWTTTESEKVTFETQNNNLAAENKYLRLSLEKEEKTLSSLQ 324
Cdd:TIGR02168  763 IEELEERLEEAEEELAEAEAEIE-----ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396   325 EELRQLKEQIRLLEDKGTSTQLVRENQVLKryLEVEKQKTNSFLNERVTLLEEARVLKRDLERERLT-------AMALRA 397
Cdd:TIGR02168  838 RRLEDLEEQIEELSEDIESLAAEIEELEEL--IEELESELEALLNERASLEEALALLRSELEELSEElreleskRSELRR 915

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396   398 ELEQLAPRQAQghadspsvqrgekeivlLQQRLAELEQKLsfEQQRSDLWERLYVEAkDQHGKQEADGRKRGSKGSHRVK 477
Cdd:TIGR02168  916 ELEELREKLAQ-----------------LELRLEGLEVRI--DNLQERLSEEYSLTL-EEAEALENKIEDDEEEARRRLK 975

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564364396   478 S-KSKETFLGTVkeTFDAM-----KNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFR 533
Cdd:TIGR02168  976 RlENKIKELGPV--NLAAIeeyeeLKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFK 1035
PLN02328 PLN02328
lysine-specific histone demethylase 1 homolog
 85-228 1.20e-04

lysine-specific histone demethylase 1 homolog


Pssm-ID: 215187 [Multi-domain]  Cd Length: 808  Bit Score: 45.37  E-value: 1.20e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396  85 TEVEETTSPEDNVYfGTTSDDSDIVT--LEPPKLEEMGIQEVAIIKDDLNLGSSSSSQYTFCQPEPVFS--SQHSDEESS 160
Cdd:PLN02328   3 TETKEPEDPADNVN-DVVSEASSPETdlSLSPSQSEQNIENDGQNSPETQSPLTELQPSPLPPNTTLDApvSDSQGDESS 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564364396 161 SDD-----TSHEPSPAPRRRRNRKKtvsiseseepLLPEPEDEPSkeTSKRHFSGGLNKCIILALVIAISMGF 228
Cdd:PLN02328  82 SEQqpqnpNSTEPAPPPKKRRRRKR----------FFTEINANPA--FRRHRVRGGLGKEVDVEALIAISVGF 142
PTZ00121 PTZ00121
MAEBL; Provisional
 238-571 3.44e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.98  E-value: 3.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396  238 QKRQQLGRKVHEDELNSVKDYLFQCQQEQECALDFKTQSSKENLERCWTTTESEKVTFETQNNNLAAENKYLRLSLEKEE 317
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396  318 KTLSSLQEELRQLKEQIRLLEDKGT-STQLVRENQVLKRYLEVEKQKTNSFLNERVTLLEEARVLKRDLERERLTAMALR 396
Cdd:PTZ00121 1671 EEDKKKAEEAKKAEEDEKKAAEALKkEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396  397 AELEQLAPRQaqghadspsvQRGEKEIVLLQQRLAELEQKLSFEQQRSDLWERLYVEAKDQHGKQEADGRKRGSKGSHRV 476
Cdd:PTZ00121 1751 KDEEEKKKIA----------HLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLV 1820

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396  477 KSKSKETFLGTVKETFDA---MKNSTKEFVRHHKEKIKQAKEAVKENlkkfSDSVKSTFrHFKDTTKNIFDEKGSKRFRA 553
Cdd:PTZ00121 1821 INDSKEMEDSAIKEVADSknmQLEEADAFEKHKFNKNNENGEDGNKE----ADFNKEKD-LKEDDEEEIEEADEIEKIDK 1895

                         330
                  ....*....|....*...
gi 564364396  554 SKEEaTEKPRTAYSYSSY 571
Cdd:PTZ00121 1896 DDIE-REIPNNNMAGKNN 1912
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
488-545 4.97e-03

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 36.87  E-value: 4.97e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 564364396 488 VKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTTKNIFDE 545
Cdd:COG4980   36 LKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKEEVEPKIEE 93
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 275-446 3.19e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 53.79  E-value: 3.19e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396 275 QSSKENLERCWTTTESEKVTFETQNNNLAAENKYLRLSLEKEEKTLSSLQEELRQLKEQI-RLLEDKGTSTQLVRENQVL 353
Cdd:COG1196  238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELaRLEQDIARLEERRRELEER 317

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396 354 KRYLEVEKQKTNSFLNERVTLLEEARVLKRDLERERLTAMALRAELEQLAPRQAQGHAdspsvQRGEKEIVLLQQRLAEL 433
Cdd:COG1196  318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA-----EAEEELEELAEELLEAL 392

                        170
                 ....*....|...
gi 564364396 434 EQKLSFEQQRSDL 446
Cdd:COG1196  393 RAAAELAAQLEEL 405
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
292-464 4.55e-06

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 49.63  E-value: 4.55e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396 292 KVTFETQNNNLAAE------NKYLRLSLEKE----EKTLSSLQEELRQLKEQIRLLEDKgtstqlvrenqvLKRYleveK 361
Cdd:COG3206  139 EISYTSPDPELAAAvanalaEAYLEQNLELRreeaRKALEFLEEQLPELRKELEEAEAA------------LEEF----R 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396 362 QKTNSF-LNERVTLLEEARV-LKRDLERERLTAMALRAELEQLAPRQAQGH------ADSPSVQRGEKEIVLLQQRLAEL 433
Cdd:COG3206  203 QKNGLVdLSEEAKLLLQQLSeLESQLAEARAELAEAEARLAALRAQLGSGPdalpelLQSPVIQQLRAQLAELEAELAEL 282

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 564364396 434 EQKL--------SFEQQRSDLWERLYVEAKDQHGKQEAD 464
Cdd:COG3206  283 SARYtpnhpdviALRAQIAALRAQLQQEAQRILASLEAE 321
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
304-463 4.25e-05

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 46.68  E-value: 4.25e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396 304 AENKYLRLSLEKEEKTLSSLQEELRQLKEQIRLLEDKGTSTQLVRENQVLKRYLEVEKQKTNSFLN---ERVTLLEEARV 380
Cdd:COG4717   88 EEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEErleELRELEEELEE 167

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396 381 LKRDLERERLTAMALRAELEQLAPRQAQGHADspSVQRGEKEIVLLQQRLAELEQKLSFEQQRSDLWERLYVEAKDQHGK 460
Cdd:COG4717  168 LEAELAELQEELEELLEQLSLATEEELQDLAE--ELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERL 245


                 ...
gi 564364396 461 QEA 463
Cdd:COG4717  246 KEA 248
Crescentin pfam19220
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ...
 297-449 4.82e-05

Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.


Pssm-ID: 437057 [Multi-domain]  Cd Length: 401  Bit Score: 46.21  E-value: 4.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396  297 TQNNNLAAENKYLRLSLEKEEKTLSSLQEELRQLKEQIRLLEDKGTSTQLVRENQVlkryleVEKQKTNSFLNERVTLLE 376
Cdd:pfam19220 132 EQNRALEEENKALREEAQAAEKALQRAEGELATARERLALLEQENRRLQALSEEQA------AELAELTRRLAELETQLD 205

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564364396  377 EARVLKRDLERERLTAMALRAELEQLAPRQAQGHADSPSVQRGEKEIvlLQQRLAELEQKLSfeQQRSDLWER 449
Cdd:pfam19220 206 ATRARLRALEGQLAAEQAERERAEAQLEEAVEAHRAERASLRMKLEA--LTARAAATEQLLA--EARNQLRDR 274
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 245-533 6.65e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 46.20  E-value: 6.65e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396   245 RKVHEDELNSVKDYLFQCQQEQEcaldfKTQSSKENLERCWTTTESEKVTFETQNNNLAAENKYLRLSLEKEEKTLSSLQ 324
Cdd:TIGR02168  763 IEELEERLEEAEEELAEAEAEIE-----ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396   325 EELRQLKEQIRLLEDKGTSTQLVRENQVLKryLEVEKQKTNSFLNERVTLLEEARVLKRDLERERLT-------AMALRA 397
Cdd:TIGR02168  838 RRLEDLEEQIEELSEDIESLAAEIEELEEL--IEELESELEALLNERASLEEALALLRSELEELSEElreleskRSELRR 915

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396   398 ELEQLAPRQAQghadspsvqrgekeivlLQQRLAELEQKLsfEQQRSDLWERLYVEAkDQHGKQEADGRKRGSKGSHRVK 477
Cdd:TIGR02168  916 ELEELREKLAQ-----------------LELRLEGLEVRI--DNLQERLSEEYSLTL-EEAEALENKIEDDEEEARRRLK 975

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564364396   478 S-KSKETFLGTVkeTFDAM-----KNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFR 533
Cdd:TIGR02168  976 RlENKIKELGPV--NLAAIeeyeeLKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFK 1035
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 302-443 7.79e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 46.08  E-value: 7.79e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396 302 LAAENKYLRLSLEKEEKTLSSLQEELRQLKEQIRLLEdkgtstqlvRENQVLKRYLEVEKQKTNSFLNERVTLLEEARVL 381
Cdd:COG1196  230 LLLKLRELEAELEELEAELEELEAELEELEAELAELE---------AELEELRLELEELELELEEAQAEEYELLAELARL 300

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564364396 382 KRDLERERLTAMALRAELEQLAPR----QAQGHADSPSVQRGEKEIVLLQQRLAELEQKLSFEQQR 443
Cdd:COG1196  301 EQDIARLEERRRELEERLEELEEElaelEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
PLN02328 PLN02328
lysine-specific histone demethylase 1 homolog
 85-228 1.20e-04

lysine-specific histone demethylase 1 homolog


Pssm-ID: 215187 [Multi-domain]  Cd Length: 808  Bit Score: 45.37  E-value: 1.20e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396  85 TEVEETTSPEDNVYfGTTSDDSDIVT--LEPPKLEEMGIQEVAIIKDDLNLGSSSSSQYTFCQPEPVFS--SQHSDEESS 160
Cdd:PLN02328   3 TETKEPEDPADNVN-DVVSEASSPETdlSLSPSQSEQNIENDGQNSPETQSPLTELQPSPLPPNTTLDApvSDSQGDESS 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564364396 161 SDD-----TSHEPSPAPRRRRNRKKtvsiseseepLLPEPEDEPSkeTSKRHFSGGLNKCIILALVIAISMGF 228
Cdd:PLN02328  82 SEQqpqnpNSTEPAPPPKKRRRRKR----------FFTEINANPA--FRRHRVRGGLGKEVDVEALIAISVGF 142
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 323-457 1.39e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 45.31  E-value: 1.39e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396 323 LQEELRQLKEQIRLLEDKGTSTQLVRENQVLKRyLEVEKQKtnsflnervtLLEEARVLKRDLERERLTAMALRAELEQL 402
Cdd:COG1196  218 LKEELKELEAELLLLKLRELEAELEELEAELEE-LEAELEE----------LEAELAELEAELEELRLELEELELELEEA 286

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 564364396 403 apRQAQGHADSpSVQRGEKEIVLLQQRLAELEQKLSFEQQRSDLWERLYVEAKDQ 457
Cdd:COG1196  287 --QAEEYELLA-ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE 338
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 296-450 2.74e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.28  E-value: 2.74e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396   296 ETQNNNLAAENKYLRLSLEKEEKTLSSLQEELRQLKEQIRLLEDKGTSTQLVREN-----QVLKRYLEVEKQKTNSFLNE 370
Cdd:TIGR02168  704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEleaeiEELEERLEEAEEELAEAEAE 783

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396   371 RVTLLEEARVLKRDLERERLTAMALRAELEQLAPRQAQGHADSPSVQRG----EKEIVLLQQRLAELEQKLSF-EQQRSD 445
Cdd:TIGR02168  784 IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRiaatERRLEDLEEQIEELSEDIESlAAEIEE 863


                   ....*
gi 564364396   446 LWERL 450
Cdd:TIGR02168  864 LEELI 868
PTZ00121 PTZ00121
MAEBL; Provisional
 238-571 3.44e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.98  E-value: 3.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396  238 QKRQQLGRKVHEDELNSVKDYLFQCQQEQECALDFKTQSSKENLERCWTTTESEKVTFETQNNNLAAENKYLRLSLEKEE 317
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396  318 KTLSSLQEELRQLKEQIRLLEDKGT-STQLVRENQVLKRYLEVEKQKTNSFLNERVTLLEEARVLKRDLERERLTAMALR 396
Cdd:PTZ00121 1671 EEDKKKAEEAKKAEEDEKKAAEALKkEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396  397 AELEQLAPRQaqghadspsvQRGEKEIVLLQQRLAELEQKLSFEQQRSDLWERLYVEAKDQHGKQEADGRKRGSKGSHRV 476
Cdd:PTZ00121 1751 KDEEEKKKIA----------HLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLV 1820

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396  477 KSKSKETFLGTVKETFDA---MKNSTKEFVRHHKEKIKQAKEAVKENlkkfSDSVKSTFrHFKDTTKNIFDEKGSKRFRA 553
Cdd:PTZ00121 1821 INDSKEMEDSAIKEVADSknmQLEEADAFEKHKFNKNNENGEDGNKE----ADFNKEKD-LKEDDEEEIEEADEIEKIDK 1895

                         330
                  ....*....|....*...
gi 564364396  554 SKEEaTEKPRTAYSYSSY 571
Cdd:PTZ00121 1896 DDIE-REIPNNNMAGKNN 1912
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 296-468 4.47e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 42.83  E-value: 4.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396 296 ETQNNNLAAENKYLRLSLEKEEKTLSSLQEELRQLKEQIRLLEDK--GTSTQLVRENQVLKRyLEVEKQKTNSFLNERVT 373
Cdd:COG4942   26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRirALEQELAALEAELAE-LEKEIAELRAELEAQKE 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396 374 LLEE-ARVLKRDLERERLTAMALRAELEQLAPRQAQGHADSPSVQRGEKEIVLLQQRLAELEQKLsfEQQRSDLwERLYV 452
Cdd:COG4942  105 ELAElLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL--EAERAEL-EALLA 181

                        170
                 ....*....|....*.
gi 564364396 453 EAKDQHGKQEADGRKR 468
Cdd:COG4942  182 ELEEERAALEALKAER 197
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
318-456 5.60e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 43.37  E-value: 5.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396  318 KTLSSLQEELRQLKEQIRLLE---DKGTSTQLVRENQVLKRYL------EVEKQKTNSFLNERVTLLEEARVLKRDLERE 388
Cdd:COG4913   235 DDLERAHEALEDAREQIELLEpirELAERYAAARERLAELEYLraalrlWFAQRRLELLEAELEELRAELARLEAELERL 314

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396  389 RLTAMALRAELEQL-APRQAQGHADspsVQRGEKEIVLLQQRLAELEQKLS-FEQQRSDLWERLYVEAKD 456
Cdd:COG4913   315 EARLDALREELDELeAQIRGNGGDR---LEQLEREIERLERELEERERRRArLEALLAALGLPLPASAEE 381
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
296-381 9.20e-04

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 42.15  E-value: 9.20e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396 296 ETQNNNLAAENKYLRLSLEKEEKTLSSLQEELRQLKEQIRLLEDKGTS-TQLVRENQVLKRYLEvEKQKTNSFLNERVTL 374
Cdd:COG2433  419 EEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERREIRKDREiSRLDREIERLERELE-EERERIEELKRKLER 497


                 ....*..
gi 564364396 375 LEEARVL 381
Cdd:COG2433  498 LKELWKL 504
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
309-453 9.44e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 42.45  E-value: 9.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396 309 LRLSLEKEEKTLSSLQ--------EELRQLKEQIRLLEDK-GTSTQLVRENQVLKRYLEvEKQKTNSFLNERVTLLEEAR 379
Cdd:COG4717   47 LLERLEKEADELFKPQgrkpelnlKELKELEEELKEAEEKeEEYAELQEELEELEEELE-ELEAELEELREELEKLEKLL 125

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564364396 380 VLKRDLERERltamALRAELEQLAPRQAQGHADSPSVQRGEKEIVLLQQRLAELEQKLSFEQQRSDLWERLYVE 453
Cdd:COG4717  126 QLLPLYQELE----ALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQ 195
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
302-402 1.31e-03

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 41.77  E-value: 1.31e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396 302 LAAENKYLRLSLEKEEKTLSSLQEELRQLKEQIRLLED-----KGTSTQLVRENQVLKRYLEVEKQKTNSFLNER--VTL 374
Cdd:COG2433  390 LPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAeveelEAELEEKDERIERLERELSEARSEERREIRKDreISR 469

                         90       100
                 ....*....|....*....|....*....
gi 564364396 375 LE-EARVLKRDLERERLTAMALRAELEQL 402
Cdd:COG2433  470 LDrEIERLERELEEERERIEELKRKLERL 498
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 273-465 1.61e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 41.29  E-value: 1.61e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396 273 KTQSSKENLERCWTTTESEKVTFETQNNNLAAENKYLRLSLEKEEKTLSSLQEELRQLKEQIRLLEDK------------ 340
Cdd:COG4942   31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEleaqkeelaell 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396 341 ------------------GTSTQLVRENQVLKRYLEVEKQKTNSFLNErvtlLEEARVLKRDLERERLTAMALRAELEQL 402
Cdd:COG4942  111 ralyrlgrqpplalllspEDFLDAVRRLQYLKYLAPARREQAEELRAD----LAELAALRAELEAERAELEALLAELEEE 186

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564364396 403 APRQAQGHADSPS-VQRGEKEIVLLQQRLAELEQKlsfEQQRSDLWERLYVEAKDQHGKQEADG 465
Cdd:COG4942  187 RAALEALKAERQKlLARLEKELAELAAELAELQQE---AEELEALIARLEAEAAAAAERTPAAG 247
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
310-458 3.44e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 40.67  E-value: 3.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396  310 RLSLEKEEKTLSSLQEELRQLKEQIRLLEDkgtstqlvRENQVLKRYLEVEKQKTNSFLNErvtlLEEARVLKRDLERER 389
Cdd:COG4913   287 QRRLELLEAELEELRAELARLEAELERLEA--------RLDALREELDELEAQIRGNGGDR----LEQLEREIERLEREL 354

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564364396  390 LTAMALRAELEQLAprQAQGHADSPSVQRGEKEIVLLQQRLAELEQKLSFEQQRSDLWERLYVEAKDQH 458
Cdd:COG4913   355 EERERRRARLEALL--AALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRREL 421
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
263-446 4.10e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 40.39  E-value: 4.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396 263 QQEQECALDF---KTQSSKENLERcwttTESEKVTFETQNN--NLAAENKYLRLSLEKEEKTLSSLQEELRQLKEQIRLL 337
Cdd:COG3206  170 REEARKALEFleeQLPELRKELEE----AEAALEEFRQKNGlvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAAL 245

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396 338 EDkgtstQLVRENQVLKRYLEvekqktNSFLNERVTLLEEARvLKRDLERERLTA-----MALRAELEQLapRQAQGHAD 412
Cdd:COG3206  246 RA-----QLGSGPDALPELLQ------SPVIQQLRAQLAELE-AELAELSARYTPnhpdvIALRAQIAAL--RAQLQQEA 311

                        170       180       190
                 ....*....|....*....|....*....|....
gi 564364396 413 SPSVQRGEKEIVLLQQRLAELEQKLsfEQQRSDL 446
Cdd:COG3206  312 QRILASLEAELEALQAREASLQAQL--AQLEARL 343
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
488-545 4.97e-03

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 36.87  E-value: 4.97e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 564364396 488 VKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTTKNIFDE 545
Cdd:COG4980   36 LKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKEEVEPKIEE 93
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 263-515 9.08e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 39.34  E-value: 9.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396  263 QQEQECALDFKTQSSKEnLERCWTTTESEKVTFETQNNNLAAENKYLRLSLEKEEKTLSSLQEELRQLKEQIRLlEDKGT 342
Cdd:pfam17380 295 KMEQERLRQEKEEKARE-VERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQ-EEIAM 372

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396  343 STQLVREnqvLKRyLEVEKQKTNsflnERVTL-LEEARVLK-RDLERERLTAMALRaELEQLapRQAQGHADSPSVQRGE 420
Cdd:pfam17380 373 EISRMRE---LER-LQMERQQKN----ERVRQeLEAARKVKiLEEERQRKIQQQKV-EMEQI--RAEQEEARQREVRRLE 441

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364396  421 KEivllqqRLAELEQKLSFEQQRSDLWERLYVEAKDQHGKQ-EADGRKRGSKGSHRVKSKSKETFLGTVKETFDAMKNST 499
Cdd:pfam17380 442 EE------RAREMERVRLEEQERQQQVERLRQQEEERKRKKlELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKR 515

                         250
                  ....*....|....*.
gi 564364396  500 KEFVRHHKEKIKQAKE 515
Cdd:pfam17380 516 KLLEKEMEERQKAIYE 531
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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