|
Name |
Accession |
Description |
Interval |
E-value |
| ANKYR |
COG0666 |
Ankyrin repeat [Signal transduction mechanisms]; |
34-257 |
7.93e-41 |
|
Ankyrin repeat [Signal transduction mechanisms];
Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 152.80 E-value: 7.93e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 34 NKYDDRLMKAAERGDVEKVSSILAKKGVHPGKLDVEGRSAFHVVAAKGNLECLNAILTHGIDVATRDSAGRNALHLAAKY 113
Cdd:COG0666 51 DALGALLLLAAALAGDLLVALLLLAAGADINAKDDGGNTLLHAAARNGDLEIVKLLLEAGADVNARDKDGETPLHLAAYN 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 114 GHALCLQKLLQYNCPTEHVDLQGRTALHDAAMADCPSSIQLLCDHGASVNAKDIDGRTPLVLATQMCRPTICQLLIDRGA 193
Cdd:COG0666 131 GNLEIVKLLLEAGADVNAQDNDGNTPLHLAAANGNLEIVKLLLEAGADVNARDNDGETPLHLAAENGHLEIVKLLLEAGA 210
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564364065 194 DVNSRDKQNRTALMLGCEYGCRDAVEVLVRNGADLTLLDALGHDSSYYARIGDNLDILNLLKTA 257
Cdd:COG0666 211 DVNAKDNDGKTALDLAAENGNLEIVKLLLEAGADLNAKDKDGLTALLLAAAAGAALIVKLLLLA 274
|
|
| ANKYR |
COG0666 |
Ankyrin repeat [Signal transduction mechanisms]; |
31-257 |
4.64e-39 |
|
Ankyrin repeat [Signal transduction mechanisms];
Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 147.79 E-value: 4.64e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 31 AEWNKYDDRLMKAAERGDVEKVSSILAKKGVHPGKLDVEGRSAFHVVAAKGNLECLNAILTHGIDVATRDSAGRNALHLA 110
Cdd:COG0666 15 LLLLLLLALLLLAAALLLLLLLLLLLLLALLALALADALGALLLLAAALAGDLLVALLLLAAGADINAKDDGGNTLLHAA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 111 AKYGHALCLQKLLQYNCPTEHVDLQGRTALHDAAMADCPSSIQLLCDHGASVNAKDIDGRTPLVLATQMCRPTICQLLID 190
Cdd:COG0666 95 ARNGDLEIVKLLLEAGADVNARDKDGETPLHLAAYNGNLEIVKLLLEAGADVNAQDNDGNTPLHLAAANGNLEIVKLLLE 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564364065 191 RGADVNSRDKQNRTALMLGCEYGCRDAVEVLVRNGADLTLLDALGHDSSYYARIGDNLDILNLLKTA 257
Cdd:COG0666 175 AGADVNARDNDGETPLHLAAENGHLEIVKLLLEAGADVNAKDNDGKTALDLAAENGNLEIVKLLLEA 241
|
|
| ANKYR |
COG0666 |
Ankyrin repeat [Signal transduction mechanisms]; |
40-237 |
1.91e-32 |
|
Ankyrin repeat [Signal transduction mechanisms];
Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 128.53 E-value: 1.91e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 40 LMKAAERGDVEKVSsILAKKGVHPGKLDVEGRSAFHVVAAKGNLECLNAILTHGIDVATRDSAGRNALHLAAKYGHALCL 119
Cdd:COG0666 91 LHAAARNGDLEIVK-LLLEAGADVNARDKDGETPLHLAAYNGNLEIVKLLLEAGADVNAQDNDGNTPLHLAAANGNLEIV 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 120 QKLLQYNCPTEHVDLQGRTALHDAAMADCPSSIQLLCDHGASVNAKDIDGRTPLVLATQMCRPTICQLLIDRGADVNSRD 199
Cdd:COG0666 170 KLLLEAGADVNARDNDGETPLHLAAENGHLEIVKLLLEAGADVNAKDNDGKTALDLAAENGNLEIVKLLLEAGADLNAKD 249
|
170 180 190
....*....|....*....|....*....|....*...
gi 564364065 200 KQNRTALMLGCEYGCRDAVEVLVRNGADLTLLDALGHD 237
Cdd:COG0666 250 KDGLTALLLAAAAGAALIVKLLLLALLLLAAALLDLLT 287
|
|
| ANKYR |
COG0666 |
Ankyrin repeat [Signal transduction mechanisms]; |
55-254 |
3.13e-30 |
|
Ankyrin repeat [Signal transduction mechanisms];
Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 121.98 E-value: 3.13e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 55 ILAKKGVHPGKLDVEGRSAFHVVAAKGNLECLNAILTHGIDVATRDSAGRNALHLAAKYGHALCLQKLLQYNCPTEHVDL 134
Cdd:COG0666 6 LLLLLLLAALLLLLLLALLLLAAALLLLLLLLLLLLLALLALALADALGALLLLAAALAGDLLVALLLLAAGADINAKDD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 135 QGRTALHDAAMADCPSSIQLLCDHGASVNAKDIDGRTPLVLATQMCRPTICQLLIDRGADVNSRDKQNRTALMLGCEYGC 214
Cdd:COG0666 86 GGNTLLHAAARNGDLEIVKLLLEAGADVNARDKDGETPLHLAAYNGNLEIVKLLLEAGADVNAQDNDGNTPLHLAAANGN 165
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 564364065 215 RDAVEVLVRNGADLTLLDALGHDSSYYARIGDNLDILNLL 254
Cdd:COG0666 166 LEIVKLLLEAGADVNARDNDGETPLHLAAENGHLEIVKLL 205
|
|
| ANKYR |
COG0666 |
Ankyrin repeat [Signal transduction mechanisms]; |
40-206 |
1.56e-22 |
|
Ankyrin repeat [Signal transduction mechanisms];
Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 99.64 E-value: 1.56e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 40 LMKAAERGDVEKVSsILAKKGVHPGKLDVEGRSAFHVVAAKGNLECLNAILTHGIDVATRDSAGRNALHLAAKYGHALCL 119
Cdd:COG0666 124 LHLAAYNGNLEIVK-LLLEAGADVNAQDNDGNTPLHLAAANGNLEIVKLLLEAGADVNARDNDGETPLHLAAENGHLEIV 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 120 QKLLQYNCPTEHVDLQGRTALHDAAMADCPSSIQLLCDHGASVNAKDIDGRTPLVLATQMCRPTICQLLIDRGADVNSRD 199
Cdd:COG0666 203 KLLLEAGADVNAKDNDGKTALDLAAENGNLEIVKLLLEAGADLNAKDKDGLTALLLAAAAGAALIVKLLLLALLLLAAAL 282
|
....*..
gi 564364065 200 KQNRTAL 206
Cdd:COG0666 283 LDLLTLL 289
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
456-1278 |
9.16e-20 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 96.75 E-value: 9.16e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 456 DSAKQDRLKLQNELAHKVAEcKALALECERVKEDS--DEQIKQLEDALKDVQKRMYESEGKVKQMQTHFLALKEHLTNEA 533
Cdd:PTZ00121 1082 DAKEDNRADEATEEAFGKAE-EAKKTETGKAEEARkaEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKA 1160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 534 ATGshRVIEELReQLKDMKGKYEGASAEVGKLRNQIKQSE---MLVEGFKRDESRLVEENKRLQKECSTCEIDRERRGRR 610
Cdd:PTZ00121 1161 EDA--RKAEEAR-KAEDAKKAEAARKAEEVRKAEELRKAEdarKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKK 1237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 611 VTELEGQLKELGAKLALSVPTETFESMKSSLSNDISEKAKRLAEVGRDYEssqgeirQLKRDLESVRAQHIRPEEHEQLR 690
Cdd:PTZ00121 1238 DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAE-------EKKKADEAKKAEEKKKADEAKKK 1310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 691 SRLEQKSGELGKKVTELTLKNQTLQKEVEKLyadnkllNQQVHSLTVEMKTRYVPLRVSEEMKKAHDVNVEDLNKKlSDA 770
Cdd:PTZ00121 1311 AEEAKKADEAKKKAEEAKKKADAAKKKAEEA-------KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK-ADA 1382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 771 TQRYAEKKLEAERLLAENDKLTKNVSRLEAVFVAPEKHEKelmgLKSNiAELKMQLCELNKKcGEGQEKIRALMSENTSL 850
Cdd:PTZ00121 1383 AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADE----AKKK-AEEKKKADEAKKK-AEEAKKADEAKKKAEEA 1456
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 851 KKtlsSQYVPAKTHEEVKASLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRR--NLENVQNQMKADYVSLEEHS 928
Cdd:PTZ00121 1457 KK---AEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKadEAKKAEEAKKADEAKKAEEA 1533
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 929 RKMNMANQSlKEAQDAHTALLADYRQGQEEIVTLHAEIKAQKKELDTIQECIKLKYAPLSRMEECERKFKATEKALKEQL 1008
Cdd:PTZ00121 1534 KKADEAKKA-EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1009 sEQTHKGQVRDEEVKKGKQEnerlRKDLAALQKELKDRNVLVEEAREAERALSRKTEELGKQLKELSQKYSDVKSERE-- 1086
Cdd:PTZ00121 1613 -KKAEEAKIKAEELKKAEEE----KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEde 1687
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1087 -KLVEEKAKQTSEILAAQNLLQKQPVPLEQVEALKTS---LNGTIEHLK---EELRSKERCLEREQQAVSQLQQLL--EN 1157
Cdd:PTZ00121 1688 kKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAeeeNKIKAEEAKkeaEEDKKKAEEAKKDEEEKKKIAHLKkeEE 1767
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1158 QKSSSVTLADHLQLKEALEKEVGIMKASLREKEEESQKKTK---EVSKLQTEVQNTKQALKNLETREVVDMS-------- 1226
Cdd:PTZ00121 1768 KKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFAniiEGGKEGNLVINDSKEMEDSAIKEVADSKnmqleead 1847
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*
gi 564364065 1227 ---KYKATKNDLETQISNLNDKLASLNRKYDQVCEEKVSAKDEKELLHLNIEQEI 1278
Cdd:PTZ00121 1848 afeKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREI 1902
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
456-1249 |
1.22e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 95.89 E-value: 1.22e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 456 DSAKQDRLKLQNELAHKVAECKALALECERVKEDSDE---QIKQLEDALKDVQKRMYESEGKVKQMQTHFLALKEHLTNe 532
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEElrlEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN- 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 533 aatgSHRVIEELREQLKDMKGKYEGASAEVGKLRNQIKQSEMLVEGFKRDESRLVEENKRLQKECSTCEIDRERRGRRVT 612
Cdd:TIGR02168 314 ----LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 613 ELEGQLKELGAKLALSVPT-ETFESMKSSLSNDISEKAKRLAEVgrDYESSQGEIRQLKRDLESVRAQHIRPEEH-EQLR 690
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARlERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEELEELQEELERLEEAlEELR 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 691 SRLEQKSGELGKKVTELTLKN------QTLQKEVEKLYADNKLLNQQVHSLTVEMKTRYVPLRVSEEMKKAhdvnvedLN 764
Cdd:TIGR02168 468 EELEEAEQALDAAERELAQLQarldslERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAA-------IE 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 765 KKLSDATQRYAEKKLEAERLLAENDKltKNVSRLEAVFVAPEKHEKELMGLKSNIAELKMQLCELNKKCGEGQEKIRALM 844
Cdd:TIGR02168 541 AALGGRLQAVVVENLNAAKKAIAFLK--QNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 845 SentslkkTLSSQYVPAKTHEEVKASLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVL--RRNLENVQNQMKADYV 922
Cdd:TIGR02168 619 S-------YLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILerRREIEELEEKIEELEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 923 SLEEHSRKMNMANQSLKEAQDAHTALLADYRQGQEEIVTLHAEIKAQKKELDTIQECIKLKYAPLSRMEECERKFKATEK 1002
Cdd:TIGR02168 692 KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE 771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1003 ALKEQLSEQTHKGQVRDEEVKKGKQENERLRKDLAALQKELKDRNVLVEEAREAERALSRKT-------EELGKQLKELS 1075
Cdd:TIGR02168 772 EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIaaterrlEDLEEQIEELS 851
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1076 QKYSDVKSEREKLVEEKAKQTSEILAAQNLLQKQPVPLEQVEALKTSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLL 1155
Cdd:TIGR02168 852 EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRL 931
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1156 EnqksssVTLADHLQLKEALEKEVGIMkasLREKEEESQKKTKEVSKLQTEVQNTKQALKNLETREVVDMSKYKATK--- 1232
Cdd:TIGR02168 932 E------GLEVRIDNLQERLSEEYSLT---LEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKery 1002
|
810
....*....|....*..
gi 564364065 1233 NDLETQISNLNDKLASL 1249
Cdd:TIGR02168 1003 DFLTAQKEDLTEAKETL 1019
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
482-1330 |
1.56e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 95.51 E-value: 1.56e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 482 ECERVKEDSDEQIKQLEDALKDVQKRMYESEGKVKQMQtHFLALKEHLTNEAATGSHRVIEELREQLKDMKGKYEGASAE 561
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILNELERQLKSLERQAEKAE-RYKELKAELRELELALLVLRLEELREELEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 562 VGKLRNQIKQSEMLVEGFK----RDESRLVEENKRLQ---KECSTCEIDRERRGRRVTELEGQLKELGAKLalsvptETF 634
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRlevsELEEEIEELQKELYalaNEISRLEQQKQILRERLANLERQLEELEAQL------EEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 635 ESMKSSLSNDISEKAKRLAEVGRDYESSQGEIRQLKRDL-ESVRAQHIRPEEHEQLRSR---LEQKSGELGKKVTELTLK 710
Cdd:TIGR02168 329 ESKLDELAEELAELEEKLEELKEELESLEAELEELEAELeELESRLEELEEQLETLRSKvaqLELQIASLNNEIERLEAR 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 711 NQTLQKEVEKLYADNKLLNQQVHSLTVEMKTRYVPLRVSEEMKKAHDvnVEDLNKKLSDATQRYAEKKleaERLLAENDK 790
Cdd:TIGR02168 409 LERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEE--LERLEEALEELREELEEAE---QALDAAERE 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 791 LTKNVSRLEAVfvapEKHEKELMGLKSNIAELKMQLCELNKKCGEGQEKIRALMSENTSLKKTLSS--QYVPAKTHEEVK 868
Cdd:TIGR02168 484 LAQLQARLDSL----ERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGrlQAVVVENLNAAK 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 869 ASLS----STLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLENVQNQMKADYVsleehsrkMNMANQSLKEAQDA 944
Cdd:TIGR02168 560 KAIAflkqNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKA--------LSYLLGGVLVVDDL 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 945 HTAL-LADYRQGQEEIVTL------------------HAEIKAQKKELDTIQECIklkyaplsrmEECERKFKATEKALK 1005
Cdd:TIGR02168 632 DNALeLAKKLRPGYRIVTLdgdlvrpggvitggsaktNSSILERRREIEELEEKI----------EELEEKIAELEKALA 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1006 EQLSEQthkgQVRDEEVKKGKQENERLRKDLAALQKELkdrnvlvEEAREAERALSRKTEELGKQLKELSQKYSDVKSER 1085
Cdd:TIGR02168 702 ELRKEL----EELEEELEQLRKELEELSRQISALRKDL-------ARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1086 EKLVEEKAKQTSEILAAQNLLQKQPVPLEQVEALKTSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLLENQKSSSVTL 1165
Cdd:TIGR02168 771 EEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL 850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1166 ADHLqlkEALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLETrevvDMSKYKATKNDLETQISNLNDK 1245
Cdd:TIGR02168 851 SEDI---ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE----ELRELESKRSELRRELEELREK 923
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1246 LASLNRKYDQvceekvsakdekellhlnIEQEIRDQKERcdkslttIMELQQRIQESAKQIEAK-DNKITELLNDVERLK 1324
Cdd:TIGR02168 924 LAQLELRLEG------------------LEVRIDNLQER-------LSEEYSLTLEEAEALENKiEDDEEEARRRLKRLE 978
|
....*.
gi 564364065 1325 QALNGL 1330
Cdd:TIGR02168 979 NKIKEL 984
|
|
| Ank_2 |
pfam12796 |
Ankyrin repeats (3 copies); |
107-199 |
3.71e-19 |
|
Ankyrin repeats (3 copies);
Pssm-ID: 463710 [Multi-domain] Cd Length: 91 Bit Score: 83.63 E-value: 3.71e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 107 LHLAAKYGHALCLQKLLQYNCPTEHVDLQGRTALHDAAMADCPSSIQLLCDHgASVNAKDiDGRTPLVLATQMCRPTICQ 186
Cdd:pfam12796 1 LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD-NGRTALHYAARSGHLEIVK 78
|
90
....*....|...
gi 564364065 187 LLIDRGADVNSRD 199
Cdd:pfam12796 79 LLLEKGADINVKD 91
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
540-1363 |
5.87e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 93.58 E-value: 5.87e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 540 VIEELREQLKDMKGKYEGASaEVGKLRNQIKQSEMLVegfkrdesrLVEENKRLQKECSTCEIDRERRGRRVTELEGQLK 619
Cdd:TIGR02168 194 ILNELERQLKSLERQAEKAE-RYKELKAELRELELAL---------LVLRLEELREELEELQEELKEAEEELEELTAELQ 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 620 ELGAKLalsvptETFESMKSSLSNDISEKAKRLAEVGRDYESSQGEIRQLKRDLESVRAQhirPEEHEQLRSRLEQKSGE 699
Cdd:TIGR02168 264 ELEEKL------EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQ---LEELEAQLEELESKLDE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 700 LGKKVTELTLKNQTLQKEVEKLYADNKLLNQQVhsltVEMKTRYVPLRVSEEMKKAhDVNVEDLNKKLSDATQRYAEKKL 779
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELEAEL----EELESRLEELEEQLETLRS-KVAQLELQIASLNNEIERLEARL 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 780 eaERLLAENDKLTKNVSRLEAVFVAPEKHE--KELMGLKSNIAELKMQLCELNKKCGEGQEKIRALMSENTSLKKTLSSQ 857
Cdd:TIGR02168 410 --ERLEDRRERLQQEIEELLKKLEEAELKElqAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 858 YVPAKTHEEVKASLsSTLEKTNRALLDSKKRLDDTSQEFSKL---REENE-----VLRRNLENV----QNQMKADYVSLE 925
Cdd:TIGR02168 488 QARLDSLERLQENL-EGFSEGVKALLKNQSGLSGILGVLSELisvDEGYEaaieaALGGRLQAVvvenLNAAKKAIAFLK 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 926 EHS--------------RKMNMANQSLKEAQDAHTALLADYRQGQEEIVTLHAEIKAQKKELDTIQECIKL--KYAPLSR 989
Cdd:TIGR02168 567 QNElgrvtflpldsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELakKLRPGYR 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 990 MEECERKFKATEKALKEQLSEQTHKGQVRDEEVKKGKQENERLRKDLAALQKELKDRNVLVEEAREAERALSRKTEELGK 1069
Cdd:TIGR02168 647 IVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1070 QLKELSQKYSDVKSEREKLVEEKAKQTSEilaaqnllqkqpvpLEQVEALKTSLNGTIEHLKEELRSKERCLEREQQAVS 1149
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKE--------------LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1150 QLQQLLENQKSSsvtladhlqlKEALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLEtrevVDMSKYK 1229
Cdd:TIGR02168 793 QLKEELKALREA----------LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS----EDIESLA 858
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1230 ATKNDLETQISNLNDKLASLNRKYDQVCEEKVSAKDEKELLhlniEQEIRDQKERcdkslttIMELQQRIQESAKQIEAK 1309
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEEL----SEELRELESK-------RSELRRELEELREKLAQL 927
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*
gi 564364065 1310 DNKITELLNDVERLKQALNGLSQLTYSSGGPTKRQSQL-VDTLQQRVRDLQQQLA 1363
Cdd:TIGR02168 928 ELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDdEEEARRRLKRLENKIK 982
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
468-1268 |
8.94e-19 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 93.28 E-value: 8.94e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 468 ELAHKVAECKALALECERVKEDSDEQIKQLEDALKDVQKRMYESEGKVKQMQTHflalkehltneaatGSHRVIEELREQ 547
Cdd:PTZ00121 1167 EEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKA--------------EDAKKAEAVKKA 1232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 548 LKDMKGKYEGASAEVGKLRNQI-KQSEMLVEGFKRDESRLVEENKRLQKECSTCEIDRERRGRRVTELEGQLKELGAKLA 626
Cdd:PTZ00121 1233 EEAKKDAEEAKKAEEERNNEEIrKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE 1312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 627 LSVPTETFESMKSSLSNDISEKAKRLAEVGRDYESSQGEIRQLKRDLESVRAQhirpEEHEQLRSRLEQKSGELGKKVTE 706
Cdd:PTZ00121 1313 EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK----AEAAEKKKEEAKKKADAAKKKAE 1388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 707 LTLKNQTLQKEVEklyaDNKLLNQQVHSLTVEMKTRYVPLRVSEEMKKAHDVNVEDLNKKLSDATQRYAEKKLEAERLLA 786
Cdd:PTZ00121 1389 EKKKADEAKKKAE----EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 787 ENDKLTKNVsrlEAVFVAPEKHEKElmGLKSNIAELKMQLCELNKKCGEGQEKIRALMSENTSLKKTLSSQYVPAKTHEE 866
Cdd:PTZ00121 1465 KAEEAKKAD---EAKKKAEEAKKAD--EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 867 VKASLSSTLEKTNRAllDSKKRLDDTSQEFSKLREE---NEVLRRNLENVQNQMKADYVSLEEHSRKMNMANQSLKEAQD 943
Cdd:PTZ00121 1540 KKAEEKKKADELKKA--EELKKAEEKKKAEEAKKAEedkNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE 1617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 944 AHTAL-----LADYRQGQEEIVTLHAEIKAQKKELDTIQECIKLKYAPLSRMEEcERKFKATEKALKEQLSEQTHKGQVR 1018
Cdd:PTZ00121 1618 AKIKAeelkkAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE-EDKKKAEEAKKAEEDEKKAAEALKK 1696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1019 DEEVKKG-----KQENERLRKdLAALQKELKDRNVLVEEAREAERALSRKTEELGKQLKElSQKYSDVKSEREKLVEEKA 1093
Cdd:PTZ00121 1697 EAEEAKKaeelkKKEAEEKKK-AEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE-KKKIAHLKKEEEKKAEEIR 1774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1094 KQTSEILAaqnllqkqpvpleqvealktslngtiEHLKEELRSKERCLEREQQAV-SQLQQLLENQKSSSVTLADHLQLK 1172
Cdd:PTZ00121 1775 KEKEAVIE--------------------------EELDEEDEKRRMEVDKKIKDIfDNFANIIEGGKEGNLVINDSKEME 1828
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1173 EALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQALKN--------LETREVVDMSKyKATKNDLETQISNLND 1244
Cdd:PTZ00121 1829 DSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKekdlkeddEEEIEEADEIE-KIDKDDIEREIPNNNM 1907
|
810 820
....*....|....*....|....
gi 564364065 1245 KLASLNRKYDQVCEEKVSAKDEKE 1268
Cdd:PTZ00121 1908 AGKNNDIIDDKLDKDEYIKRDAEE 1931
|
|
| ANKYR |
COG0666 |
Ankyrin repeat [Signal transduction mechanisms]; |
86-254 |
9.08e-19 |
|
Ankyrin repeat [Signal transduction mechanisms];
Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 88.47 E-value: 9.08e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 86 LNAILTHGIDVATRDSAGRNALHLAAKYGHALCLQKLLQYNCPTEHVDLQGRTALHDAAMADCPSSIQLLCDHGASVNAK 165
Cdd:COG0666 4 LLLLLLLLLAALLLLLLLALLLLAAALLLLLLLLLLLLLALLALALADALGALLLLAAALAGDLLVALLLLAAGADINAK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 166 DIDGRTPLVLATQMCRPTICQLLIDRGADVNSRDKQNRTALMLGCEYGCRDAVEVLVRNGADLTLLDALGHDSSYYARIG 245
Cdd:COG0666 84 DDGGNTLLHAAARNGDLEIVKLLLEAGADVNARDKDGETPLHLAAYNGNLEIVKLLLEAGADVNAQDNDGNTPLHLAAAN 163
|
....*....
gi 564364065 246 DNLDILNLL 254
Cdd:COG0666 164 GNLEIVKLL 172
|
|
| Ank_2 |
pfam12796 |
Ankyrin repeats (3 copies); |
74-166 |
3.34e-18 |
|
Ankyrin repeats (3 copies);
Pssm-ID: 463710 [Multi-domain] Cd Length: 91 Bit Score: 80.93 E-value: 3.34e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 74 FHVVAAKGNLECLNAILTHGIDVATRDSAGRNALHLAAKYGHALCLQKLLQYNCPTehVDLQGRTALHDAAMADCPSSIQ 153
Cdd:pfam12796 1 LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVN--LKDNGRTALHYAARSGHLEIVK 78
|
90
....*....|...
gi 564364065 154 LLCDHGASVNAKD 166
Cdd:pfam12796 79 LLLEKGADINVKD 91
|
|
| PHA03095 |
PHA03095 |
ankyrin-like protein; Provisional |
50-218 |
6.92e-18 |
|
ankyrin-like protein; Provisional
Pssm-ID: 222980 [Multi-domain] Cd Length: 471 Bit Score: 88.54 E-value: 6.92e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 50 EKVSSILAKKGVHPGKLDVEGRSAFHV--VAAKGNLECLNAILTHGIDVATRDSAGRNALHLAAKYGH--ALCLQKLLQY 125
Cdd:PHA03095 132 PKVIRLLLRKGADVNALDLYGMTPLAVllKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKprARIVRELIRA 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 126 NCPTEHVDLQGRTALHDAAM-ADCPSS-IQLLCDHGASVNAKDIDGRTPLVLATQMCRPTICQLLIDRGADVNSRDKQNR 203
Cdd:PHA03095 212 GCDPAATDMLGNTPLHSMATgSSCKRSlVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGN 291
|
170
....*....|....*
gi 564364065 204 TALMLGCEYGCRDAV 218
Cdd:PHA03095 292 TPLSLMVRNNNGRAV 306
|
|
| Ank_2 |
pfam12796 |
Ankyrin repeats (3 copies); |
140-232 |
3.76e-16 |
|
Ankyrin repeats (3 copies);
Pssm-ID: 463710 [Multi-domain] Cd Length: 91 Bit Score: 75.15 E-value: 3.76e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 140 LHDAAMADCPSSIQLLCDHGASVNAKDIDGRTPLVLATQMCRPTICQLLIDRgADVNSRDkQNRTALMLGCEYGCRDAVE 219
Cdd:pfam12796 1 LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD-NGRTALHYAARSGHLEIVK 78
|
90
....*....|...
gi 564364065 220 VLVRNGADLTLLD 232
Cdd:pfam12796 79 LLLEKGADINVKD 91
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
632-1218 |
4.56e-16 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 83.96 E-value: 4.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 632 ETFESMKSSLSNDISEKAKRLAEVGRDYESSQGEIRQLKRDLESVRAQHIRPEEHEQLRSRLEQKSGELGKKVTELTLKN 711
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 712 QTLQKEVEKLYADNKLLNQQVHSLtvemktryvplrvsEEMKKahdvnVEDLNKKLSDATQRYAEKKLEAERLLAendKL 791
Cdd:PRK03918 262 RELEERIEELKKEIEELEEKVKEL--------------KELKE-----KAEEYIKLSEFYEEYLDELREIEKRLS---RL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 792 TKNVSRLEAVFVAPEKHEKELMGLKSNIAELKMQLCELnKKCGEGQEKIRALMSENTSLKKTLSSQyvpaktheevkasl 871
Cdd:PRK03918 320 EEEINGIEERIKELEEKEERLEELKKKLKELEKRLEEL-EERHELYEEAKAKKEELERLKKRLTGL-------------- 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 872 ssTLEKTNRALLDSKKRLDDTSQEFSKLREEnevlRRNLENVQNQMKADYVSLEEHSRKMNMANQSLKEAQDA-----HT 946
Cdd:PRK03918 385 --TPEKLEKELEELEKAKEEIEEEISKITAR----IGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKelleeYT 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 947 ALLADYRQGQEEIVTLHAEIKAQKKELDTIQEciklKYAPLSRMEECERKFKATEKALKEQLSEQTHKgqvRDEEVKKGK 1026
Cdd:PRK03918 459 AELKRIEKELKEIEEKERKLRKELRELEKVLK----KESELIKLKELAEQLKELEEKLKKYNLEELEK---KAEEYEKLK 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1027 QENERLRKDLAALQKELKDRNVLVEEAREAERALSRKTEELGKQLKELSQKysdvKSEREKLVEEKAKQTSEILAAQNLL 1106
Cdd:PRK03918 532 EKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEEL----GFESVEELEERLKELEPFYNEYLEL 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1107 QKQPVPLEQVEALKTSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLLENQKSSSVTladhlQLKEALEKEVGIMKASL 1186
Cdd:PRK03918 608 KDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELR-----EEYLELSRELAGLRAEL 682
|
570 580 590
....*....|....*....|....*....|..
gi 564364065 1187 REKEEESQKKTKEVSKLQTEVQNTKQALKNLE 1218
Cdd:PRK03918 683 EELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
439-1143 |
1.08e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.80 E-value: 1.08e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 439 SENEILKKELEAMRTFCDSAKQDRLKLQNELAHKVAECKALALECERVKEDSDEQIKQLEDALKDVQkrmyESEGKVKQM 518
Cdd:TIGR02168 274 LEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA----ELEEKLEEL 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 519 QTHFLALKEHLTNEAAT--GSHRVIEELREQLKDMKGKYEGASAEVGKLRNQIKQSEMLVEGFKRDESRLVEENKRLQKE 596
Cdd:TIGR02168 350 KEELESLEAELEELEAEleELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 597 CStcEIDRERRGRRVTELEGQLKELGAKLalsvptETFESMKSSLSNDISEKAKRLAEVGRDYESSQGEIRQLKRDLESV 676
Cdd:TIGR02168 430 LE--EAELKELQAELEELEEELEELQEEL------ERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 677 R-----------AQHIRPEEHEQLRSRLEQKSG-------ELGKKVTELTLKNQTLQKEVEKLYADNKLLNQQVHSLTV- 737
Cdd:TIGR02168 502 EgfsegvkallkNQSGLSGILGVLSELISVDEGyeaaieaALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSi 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 738 ---EMKTRYVPLRVSEEMKKAHDVNVEDLNKKLSDATQ------RYAEKKLEAERLLAENDKLTKNVSrLEAVFVAP--- 805
Cdd:TIGR02168 582 kgtEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvLVVDDLDNALELAKKLRPGYRIVT-LDGDLVRPggv 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 806 -------------------EKHEKELMGLKSNIAELKMQLCELNKKCGEGQEKIRALMSENTSLKKTLSSQYVPAKTHEE 866
Cdd:TIGR02168 661 itggsaktnssilerrreiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 867 VKASLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLENVQNQMkadyvslEEHSRKMNMANQSLKEAQDAHT 946
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI-------EQLKEELKALREALDELRAELT 813
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 947 ALLADYRQGQEEIVTLHAEIKAQKKELDTIQECIklkyaplsrmeecerkfkateKALKEQLSEQTHkgqvrdeEVKKGK 1026
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQI---------------------EELSEDIESLAA-------EIEELE 865
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1027 QENERLRKDLAALQKELKDRNVLVEEAREAERALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEILA-AQNL 1105
Cdd:TIGR02168 866 ELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNlQERL 945
|
730 740 750
....*....|....*....|....*....|....*...
gi 564364065 1106 LQKQPVPLEQVEALKTSLNGTIEHLKEELRSKERCLER 1143
Cdd:TIGR02168 946 SEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
646-1406 |
2.43e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.64 E-value: 2.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 646 SEKAKRLAEVGRDYESSQ-----GEIRQLKRDLESVRAQHirpEEHEQLRSRLEQKSGELGKKVTELTLKNQTLQKEVEK 720
Cdd:TIGR02168 209 AEKAERYKELKAELRELElallvLRLEELREELEELQEEL---KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 721 LYADNKLLNQQVHSLTVEmktryvplrvsEEMKKAHDVNVEDLNKKLSDATQRYAEKKLEAERLLAENDK----LTKNVS 796
Cdd:TIGR02168 286 LQKELYALANEISRLEQQ-----------KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEkleeLKEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 797 RLEAVFvapEKHEKELMGLKSNIAELKMQLCELNKKCGEGQEKIRALMSENTSLKKTLSSQYVPAKTHEEVKASLSSTLE 876
Cdd:TIGR02168 355 SLEAEL---EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 877 KTNRALLDSkkRLDDTSQEFSKLREENEVLRRNLENVQNQmkadyvsLEEHSRKMNMANQSLKEAQdahtALLADYRQGQ 956
Cdd:TIGR02168 432 EAELKELQA--ELEELEEELEELQEELERLEEALEELREE-------LEEAEQALDAAERELAQLQ----ARLDSLERLQ 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 957 EEIVTLHAEIKAQKKEldtiQECIKLKYAPLSRMEECERKF-KATEKALKEQL-------SEQTHKGQVRDEEVKKGK-- 1026
Cdd:TIGR02168 499 ENLEGFSEGVKALLKN----QSGLSGILGVLSELISVDEGYeAAIEAALGGRLqavvvenLNAAKKAIAFLKQNELGRvt 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1027 ----------QENERLRKDLAALQKELKDRNVLVEEAREAERALS------RKTEELG---KQLKELSQKYSDV------ 1081
Cdd:TIGR02168 575 flpldsikgtEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvLVVDDLDnalELAKKLRPGYRIVtldgdl 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1082 ---------------------KSEREKLVEEKAKQTSEILAAQNllqkqpvpleQVEALKTSLngtiEHLKEELRSKERC 1140
Cdd:TIGR02168 655 vrpggvitggsaktnssilerRREIEELEEKIEELEEKIAELEK----------ALAELRKEL----EELEEELEQLRKE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1141 LEREQQAVSQLQQLLENQKSSSVTLADHLQLKEALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLetr 1220
Cdd:TIGR02168 721 LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE--- 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1221 evvdmskykatKNDLETQISNLNDKLASLNRKYDQVCEEKvsakdekellhlnieQEIRDQKERCDKSLTtimELQQRIQ 1300
Cdd:TIGR02168 798 -----------LKALREALDELRAELTLLNEEAANLRERL---------------ESLERRIAATERRLE---DLEEQIE 848
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1301 ESAKQIEAKDNKITELLNDVERLKQALNGLSQLTYSSGGPTKRQSQLVDTLQQRVRDLQQQLADADRQHQEviaiyrthl 1380
Cdd:TIGR02168 849 ELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE--------- 919
|
810 820
....*....|....*....|....*.
gi 564364065 1381 LSAAQGHMDEDVQAALLQIIQMRQGL 1406
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
522-1309 |
2.53e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 82.11 E-value: 2.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 522 FLALKEHLTNEAATGSHRVIEELReqlKDMKGKYEGASA--EVGKLRNQIKQSEmlvEGFKRDESRLVEENKRLQKECST 599
Cdd:PTZ00121 1081 FDAKEDNRADEATEEAFGKAEEAK---KTETGKAEEARKaeEAKKKAEDARKAE---EARKAEDARKAEEARKAEDAKRV 1154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 600 CEIDRERRGRRVTE---LEGQLKELGAKLALSVptETFESMKSSLSNDISEKAKRLAEVGRDYESSQGEirQLKRDLESV 676
Cdd:PTZ00121 1155 EIARKAEDARKAEEarkAEDAKKAEAARKAEEV--RKAEELRKAEDARKAEAARKAEEERKAEEARKAE--DAKKAEAVK 1230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 677 RAQHIRPEEHEQLRSRlEQKSGELGKKVTELTLKNQTLQKEVEKlyADNKLLNQQVHSltVEMKTRYVPLRVSEEMKKAH 756
Cdd:PTZ00121 1231 KAEEAKKDAEEAKKAE-EERNNEEIRKFEEARMAHFARRQAAIK--AEEARKADELKK--AEEKKKADEAKKAEEKKKAD 1305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 757 DVNVEDLNKKLSDATQRYAE---KKLEAERLLAENDKLTKNVSRLEAvfvapEKHEKELMGLKSNIAELKMQLCELNKKC 833
Cdd:PTZ00121 1306 EAKKKAEEAKKADEAKKKAEeakKKADAAKKKAEEAKKAAEAAKAEA-----EAAADEAEAAEEKAEAAEKKKEEAKKKA 1380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 834 GEGQEKIRALMSENTSLKKTLSSQyvpaKTHEEVKASLSStlektnralldsKKRLDDTSQEFSKLREENEVLRRnlenv 913
Cdd:PTZ00121 1381 DAAKKKAEEKKKADEAKKKAEEDK----KKADELKKAAAA------------KKKADEAKKKAEEKKKADEAKKK----- 1439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 914 qnqmkadyvslEEHSRKMNMANQSLKEAQDAHTALLADYRQGQEEIVTLHAEIKAQKKELDTIQECIKLKYAPLSRMEEC 993
Cdd:PTZ00121 1440 -----------AEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA 1508
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 994 ERKFKATEKALKEQLSEQTHKGQ--VRDEEVKKG--KQENERLRKDLAALQKELKDRnvlVEEAREAE---RALSRKTEE 1066
Cdd:PTZ00121 1509 KKKADEAKKAEEAKKADEAKKAEeaKKADEAKKAeeKKKADELKKAEELKKAEEKKK---AEEAKKAEedkNMALRKAEE 1585
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1067 LGKQLKELSQKYSDVKSEREKLVEEKAKQTSEILAAQNLLQKQpvpleqvealktslngtiehlKEELRSKERCLEREQQ 1146
Cdd:PTZ00121 1586 AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA---------------------EEEKKKVEQLKKKEAE 1644
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1147 AVSQLQQLLENQKSSSVTlADHLQLKEALEKEvgimKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLETREVVDMS 1226
Cdd:PTZ00121 1645 EKKKAEELKKAEEENKIK-AAEEAKKAEEDKK----KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1227 KYKATKNDLETQISNLNDKLASLNRKYDqvcEEKVSAKDEKELLHLNIEQEIRDQKERCDKSLTTIMELQQRIQESAKQI 1306
Cdd:PTZ00121 1720 ELKKAEEENKIKAEEAKKEAEEDKKKAE---EAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEV 1796
|
...
gi 564364065 1307 EAK 1309
Cdd:PTZ00121 1797 DKK 1799
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
634-1322 |
5.31e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 80.96 E-value: 5.31e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 634 FESMKSSLSNDISEKAKRLAEVGRDYESSQGEIRQLKRDLESvRAQHIRPEEH----EQLRSRLEQKSGELGKKVTELTL 709
Cdd:PTZ00121 1081 FDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKK-KAEDARKAEEarkaEDARKAEEARKAEDAKRVEIARK 1159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 710 KNQTLQKEVEKLYADNKLLNQQVHSLTVEmktRYVPLRVSEEMKKAHDVNVEDLNKKLSDATQRYAEKKLEAERLLAEND 789
Cdd:PTZ00121 1160 AEDARKAEEARKAEDAKKAEAARKAEEVR---KAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAK 1236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 790 KLTKNVSRLEAVFVAPEKHEKELMGLKSNI-------AELKMQLCELnKKCGEGQEKIRALMSENTSLKKTLSSQYVPAK 862
Cdd:PTZ00121 1237 KDAEEAKKAEEERNNEEIRKFEEARMAHFArrqaaikAEEARKADEL-KKAEEKKKADEAKKAEEKKKADEAKKKAEEAK 1315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 863 THEEVKASLSSTLEKTNRAlldsKKRLDDTSQEFSKLREENEVLRRNLENVQNQMKADYVSLEEHSRKMNMANQSLKEAQ 942
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAA----KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 943 DAHTALL-ADYRQGQEEIVTLHAEIKAQKKELDTIQECIKLKYAPLSRMEECERKFKATEKALKEQLSEQTHKGQVRDEE 1021
Cdd:PTZ00121 1392 KADEAKKkAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1022 VKKGKQENERLRKdLAALQKELKDRNVLVEEAREAERAlSRKTEELGKqlKELSQKYSDVKSEREKLVEEKAKQTSEILA 1101
Cdd:PTZ00121 1472 ADEAKKKAEEAKK-ADEAKKKAEEAKKKADEAKKAAEA-KKKADEAKK--AEEAKKADEAKKAEEAKKADEAKKAEEKKK 1547
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1102 AQNLlqKQPVPLEQVEALKTslngtIEHLKEELRSKERCLEREQQAvSQLQQLLENQKSSSVTLADHLQLKEALEKEVGI 1181
Cdd:PTZ00121 1548 ADEL--KKAEELKKAEEKKK-----AEEAKKAEEDKNMALRKAEEA-KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAK 1619
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1182 MKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLETREVVDMSKYKATKNDLETQISNLNDKLASLNRKYDQVCEEKV 1261
Cdd:PTZ00121 1620 IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE 1699
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564364065 1262 SAKDEKELLHLNIEQEIRDQKERCDKSLTTIM--------ELQQRIQESAKQIEAKDNKITELLNDVER 1322
Cdd:PTZ00121 1700 EAKKAEELKKKEAEEKKKAEELKKAEEENKIKaeeakkeaEEDKKKAEEAKKDEEEKKKIAHLKKEEEK 1768
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
540-1327 |
1.24e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 79.34 E-value: 1.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 540 VIEELREQLKDMKG------KYEGASAEVGKLR-----NQIKQSEMLVEGFKRDESRLVEENKRLQKECSTCEIDRERRG 608
Cdd:TIGR02169 192 IIDEKRQQLERLRRerekaeRYQALLKEKREYEgyellKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 609 RRVTELEGQLKELGAKLALSVPTE--TFESMKSSLSNDISEKAKRLaevgrdyESSQGEIRQLKRDLESVRaqhirpEEH 686
Cdd:TIGR02169 272 QLLEELNKKIKDLGEEEQLRVKEKigELEAEIASLERSIAEKEREL-------EDAEERLAKLEAEIDKLL------AEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 687 EQLRSRLEQKSGELGKkvteltlknqtLQKEVEKLYADNKLLNQQVHSLTVEMKTRYVPLRvseemkkahdvnveDLNKK 766
Cdd:TIGR02169 339 EELEREIEEERKRRDK-----------LTEEYAELKEELEDLRAELEEVDKEFAETRDELK--------------DYREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 767 LSDATQRYAEKKLEAERLLAENDKLTKNVSRLEAvfvapekhekELMGLKSNIAELKMQLCELnkkcgegQEKIRALMSE 846
Cdd:TIGR02169 394 LEKLKREINELKRELDRLQEELQRLSEELADLNA----------AIAGIEAKINELEEEKEDK-------ALEIKKQEWK 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 847 NTSLKKTLSSQYVPAKTHEEVKASLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLENVQNQM------KAD 920
Cdd:TIGR02169 457 LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVaqlgsvGER 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 921 YVSLEEHSRKMNMANQSLKEAQDAHTA--LLADYRQGQEEIVTLHaEIKAQKKELDTIQECIKLKYAplSRMEECERKF- 997
Cdd:TIGR02169 537 YATAIEVAAGNRLNNVVVEDDAVAKEAieLLKRRKAGRATFLPLN-KMRDERRDLSILSEDGVIGFA--VDLVEFDPKYe 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 998 KATEKALKEQL------SEQTHKGQVR----DEEV---------------------KKGKQENERLRKDLAALQKELkdr 1046
Cdd:TIGR02169 614 PAFKYVFGDTLvvedieAARRLMGKYRmvtlEGELfeksgamtggsraprggilfsRSEPAELQRLRERLEGLKREL--- 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1047 NVLVEEAREAERALSrkteELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEILAAQNLLQKQPVPLEQVEAlktslngT 1126
Cdd:TIGR02169 691 SSLQSELRRIENRLD----ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS-------E 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1127 IEHLKEELRSKERCLEREQQAVSQLQQLLENQKSSSVTladhlQLKEALEKEVGIMKASLREKEEESQKKTKEVSKLQTE 1206
Cdd:TIGR02169 760 LKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQ-----AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1207 VQNTKQALKNLETRevvdmskykatKNDLETQISNLNDKLASLNRKydqvCEEKVSAKDEKELLHLNIEQEIRDQKERcd 1286
Cdd:TIGR02169 835 IQELQEQRIDLKEQ-----------IKSIEKEIENLNGKKEELEEE----LEELEAALRDLESRLGDLKKERDELEAQ-- 897
|
810 820 830 840
....*....|....*....|....*....|....*....|.
gi 564364065 1287 kslttIMELQQRIQESAKQIEAKDNKITELLNDVERLKQAL 1327
Cdd:TIGR02169 898 -----LRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL 933
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
482-1287 |
1.42e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 79.34 E-value: 1.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 482 ECERVKEDSDEQIKQLEDALKDVQKRMYESEGKVKQMQTH------FLALKEHLTNEAATGSHRVIEELREQLKDMKGKY 555
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRErekaerYQALLKEKREYEGYELLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 556 EGASAEVGKLRNQIKQSE--------MLVEGFKRDESRLVEENKRLQKECSTCEIDRERRGRRVTELEGQLKELGAKLA- 626
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEkrleeieqLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAk 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 627 LSVPTETFESMKSSLSNDISEKAKRLAEVGRDYESSQGEIRQLKRDLESVRAQHIRP-EEHEQLRSRLEQKSGELGKKVT 705
Cdd:TIGR02169 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETrDELKDYREKLEKLKREINELKR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 706 ELTLKNQTLQK---EVEKLYADNKLLNQQVHSLTVEMKTRYVPLRVSEEmkkahdvNVEDLNKKLSDATQRYAEKKLEAE 782
Cdd:TIGR02169 407 ELDRLQEELQRlseELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW-------KLEQLAADLSKYEQELYDLKEEYD 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 783 RLLAENDKLTKNVSRLEAVFVAPEKHEKE----LMGLKSNIAELKMQLCELnkkcgeGQEKIRALMSENTSLKKTLssQY 858
Cdd:TIGR02169 480 RVEKELSKLQRELAEAEAQARASEERVRGgravEEVLKASIQGVHGTVAQL------GSVGERYATAIEVAAGNRL--NN 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 859 VPAKThEEVKASLSSTL--EKTNRALLDSKKRLDDTSQEFSKLREE-------------------------NEVLRRNLE 911
Cdd:TIGR02169 552 VVVED-DAVAKEAIELLkrRKAGRATFLPLNKMRDERRDLSILSEDgvigfavdlvefdpkyepafkyvfgDTLVVEDIE 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 912 NVQNQM-KADYVSLE----EHSRKMNMANQSLKEAQDAHTALLADYRQGQEEIVTLHAEIKAQKKELDTIQeciKLKYAP 986
Cdd:TIGR02169 631 AARRLMgKYRMVTLEgelfEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIE---NRLDEL 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 987 LSRMEECERKFKATEKALkEQLSEQTHKGQVRDEEVK----KGKQENERLRKDLAALQKELKDRNVLVEEAREAERALSR 1062
Cdd:TIGR02169 708 SQELSDASRKIGEIEKEI-EQLEQEEEKLKERLEELEedlsSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEA 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1063 KteELGKQLKELSQKYSDVKSEREKLVE-------EKAKQTSEILAAQNLLQKQPVPLEQVEALKTSLNGTIEHLKEELR 1135
Cdd:TIGR02169 787 R--LSHSRIPEIQAELSKLEEEVSRIEArlreieqKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1136 SKERCLEREQQAVSQLQQLLENQKSSsvtladhlqlKEALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQALK 1215
Cdd:TIGR02169 865 ELEEELEELEAALRDLESRLGDLKKE----------RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELS 934
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1216 NLE---------TREVVDMSKYKATKNDLETQISnlndKLASLNRKYDQVCEEKVSAKDEKELLHLNIEQEIRDQKERCD 1286
Cdd:TIGR02169 935 EIEdpkgedeeiPEEELSLEDVQAELQRVEEEIR----ALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIE 1010
|
.
gi 564364065 1287 K 1287
Cdd:TIGR02169 1011 E 1011
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
759-1333 |
1.74e-14 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 78.95 E-value: 1.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 759 NVEDLNKKLSDATQRYAEKKLEAERLLAENDKLTKNVSRLEAVFVAPEKHEKELMGLKSNIAELKMQLCELNKKCGEGQE 838
Cdd:PRK03918 180 RLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 839 KIRALMSENTSLKKTLssqyvpaKTHEEVKASLSStLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLENVQNQMK 918
Cdd:PRK03918 260 KIRELEERIEELKKEI-------EELEEKVKELKE-LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 919 adyvSLEEHSRKMNMANQSLKEAQDAHTALladyrqgqEEIVTLHAEIKAQKKELdtiqECIKLKYAPLSrMEECERKFK 998
Cdd:PRK03918 332 ----ELEEKEERLEELKKKLKELEKRLEEL--------EERHELYEEAKAKKEEL----ERLKKRLTGLT-PEKLEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 999 ATEKAlKEQLSEQTHKGQVRDEEVkkgKQENERLRKDLAALQKE-----LKDRNVLVEEAREAERALSRKTEELGKQLKE 1073
Cdd:PRK03918 395 ELEKA-KEEIEEEISKITARIGEL---KKEIKELKKAIEELKKAkgkcpVCGRELTEEHRKELLEEYTAELKRIEKELKE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1074 LSQKYSDVKSEREKlVEEKAKQTSEILAAQNLlqkqpvpLEQVEALKTSLNG-TIEHLK------EELRSKERCLEREQQ 1146
Cdd:PRK03918 471 IEEKERKLRKELRE-LEKVLKKESELIKLKEL-------AEQLKELEEKLKKyNLEELEkkaeeyEKLKEKLIKLKGEIK 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1147 AVSQLQQLLENQKSSSVTLADHLQ-LKEALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLETREvvdm 1225
Cdd:PRK03918 543 SLKKELEKLEELKKKLAELEKKLDeLEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREE---- 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1226 SKYKATKNDLETQISNLNDKLASLNRKYDQVCEEKVSAKDEKELLHLNIEQEIRDQKERCDKSLTTIMELQQRIQESAKQ 1305
Cdd:PRK03918 619 KELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEK 698
|
570 580
....*....|....*....|....*...
gi 564364065 1306 IEAKDNKITELLNDVERLKQALNGLSQL 1333
Cdd:PRK03918 699 LKEELEEREKAKKELEKLEKALERVEEL 726
|
|
| PLN03192 |
PLN03192 |
Voltage-dependent potassium channel; Provisional |
77-229 |
2.84e-14 |
|
Voltage-dependent potassium channel; Provisional
Pssm-ID: 215625 [Multi-domain] Cd Length: 823 Bit Score: 77.99 E-value: 2.84e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 77 VAAKGNLECLNAILTHGIDVATRDSAGRNALHLAAKYGHALCLQKLLQYNCPTEHVDLQGRTALHDAAMADCPSSIQLLC 156
Cdd:PLN03192 532 VASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILY 611
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564364065 157 dHGASVNAKDIDGRTpLVLATQMCRPTICQLLIDRGADVNSRDKQNRTALMLGCEYGCRDAVEVLVRNGADLT 229
Cdd:PLN03192 612 -HFASISDPHAAGDL-LCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVD 682
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
809-1328 |
2.89e-14 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 77.75 E-value: 2.89e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 809 EKELMGLKSNIAELKMQLCELNKKCGEGQEKIRALMSENTSLKKTLSSQYVPAKTHEEVKASLSSTLEKTNRALLDSKKR 888
Cdd:TIGR04523 39 EKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQ 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 889 LDDTSQEFSKLREENEVLRRNLENVQNQMKADYVSLEEHSRKMNMANQSLKEAQDAHTALLADYRQGQEEIVTLHAEIKA 968
Cdd:TIGR04523 119 KNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLK 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 969 QKKELDTIQECIKLKYAPLSRMEECERKFKATEKALKE---QLSEQTHKGQVRDEEVKKGKQENERLRKDLAALQKELKD 1045
Cdd:TIGR04523 199 LELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKkqqEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQ 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1046 RNVLVEEAREAERALSRKTEELGKQLKELSQKysDVKSEREKLVEEKAKQTSEILAAQNLLQKQPVPLEQVEALKTSLNG 1125
Cdd:TIGR04523 279 NNKKIKELEKQLNQLKSEISDLNNQKEQDWNK--ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSES 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1126 TIEHLKEELRSKERCLEREQQAVSQLQQLLENQKSSSVTLADHLQLKEALEKEVGImkaSLREKEEESQKKTKEVSKLQT 1205
Cdd:TIGR04523 357 ENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDE---QIKKLQQEKELLEKEIERLKE 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1206 EVQNTKQALKNLETREVVDMSKYK---ATKNDLETQISNLNDKLASLNRKYDQVCEEKVSakDEKELLHLNieQEIRDQK 1282
Cdd:TIGR04523 434 TIIKNNSEIKDLTNQDSVKELIIKnldNTRESLETQLKVLSRSINKIKQNLEQKQKELKS--KEKELKKLN--EEKKELE 509
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 564364065 1283 ERCDKSLTTIMELQQRIQESAKQIEAKDNKITELLNDVERLKQALN 1328
Cdd:TIGR04523 510 EKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELK 555
|
|
| PHA03100 |
PHA03100 |
ankyrin repeat protein; Provisional |
48-196 |
5.93e-14 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 222984 [Multi-domain] Cd Length: 422 Bit Score: 75.86 E-value: 5.93e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 48 DVEKVSSILAKKGVHPGKLDVEGRSAFHVVAAK--GNLECLNAILTHGIDVATRDSAGRNALHLAAKYGHA------LCL 119
Cdd:PHA03100 84 DVKEIVKLLLEYGANVNAPDNNGITPLLYAISKksNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIdlkilkLLI 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 120 QK------------LLQYNCPTEHVDLQGRTALHDAAMADCPSSIQLLCDHGASVNAKDIDGRTPLVLATQMCRPTICQL 187
Cdd:PHA03100 164 DKgvdinaknrvnyLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKL 243
|
....*....
gi 564364065 188 LIDRGADVN 196
Cdd:PHA03100 244 LLNNGPSIK 252
|
|
| PHA02876 |
PHA02876 |
ankyrin repeat protein; Provisional |
89-228 |
2.03e-13 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 165207 [Multi-domain] Cd Length: 682 Bit Score: 75.10 E-value: 2.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 89 ILTHGIDVATRDSAGRNALHLAAKYGHALCLQKLLQYNCPTEHVDLQGRTALHDAAMADCP-SSIQLLCDHGASVNAKDI 167
Cdd:PHA02876 361 LLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPyMSVKTLIDRGANVNSKNK 440
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564364065 168 DGRTPLVLATQM-CRPTICQLLIDRGADVNSRDKQNRTALMLGCEYgcRDAVEVLVRNGADL 228
Cdd:PHA02876 441 DLSTPLHYACKKnCKLDVIEMLLDNGADVNAINIQNQYPLLIALEY--HGIVNILLHYGAEL 500
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
539-1156 |
2.17e-13 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 75.10 E-value: 2.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 539 RVIEELREQLKDMKGKYEGASAEVGKLrnqikqsemlvEGFKRDESRLVEENKRLQKECSTCEIDRERRGRRVTELEGQL 618
Cdd:PRK03918 207 REINEISSELPELREELEKLEKEVKEL-----------EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 619 KELGAKLAlsvptetfesmkssLSNDISEKAKRLAEVGRDYESSQGEIRQLKRDLESVRAQHIRPEEHEQLRSRLEQKSG 698
Cdd:PRK03918 276 EELEEKVK--------------ELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 699 ELGKKVTEltlknqtLQKEVEKLYADNKLLnqqvhsltvemktryvplrvseEMKKAHDVNVEDLNKKLSDATQRYAEKK 778
Cdd:PRK03918 342 ELKKKLKE-------LEKRLEELEERHELY----------------------EEAKAKKEELERLKKRLTGLTPEKLEKE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 779 LEAerLLAENDKLTKNVSRLEAvfvapekhekELMGLKSNIAELKMQLCELNKKCGEGQEKIRALMSENtslKKTLSSQY 858
Cdd:PRK03918 393 LEE--LEKAKEEIEEEISKITA----------RIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEH---RKELLEEY 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 859 vpaktHEEVKaSLSSTLEKTNRALLDSKKRLddtsQEFSKLREENEVLRRNLEnVQNQMKadyvSLEEHSRKMNmanqsL 938
Cdd:PRK03918 458 -----TAELK-RIEKELKEIEEKERKLRKEL----RELEKVLKKESELIKLKE-LAEQLK----ELEEKLKKYN-----L 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 939 KEAQDAHTallaDYRQGQEEIVTLHAEIKAQKKELDTIQECIKlkyaplsRMEECERKFKATEKALKEQLSEQTHKGQVR 1018
Cdd:PRK03918 518 EELEKKAE----EYEKLKEKLIKLKGEIKSLKKELEKLEELKK-------KLAELEKKLDELEEELAELLKELEELGFES 586
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1019 DEEVKKGKQENERL----------RKDLAALQKELKDRNVLVEEAREAERALSRKTEELGKQLKELSQKYSDvkSEREKL 1088
Cdd:PRK03918 587 VEELEERLKELEPFyneylelkdaEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE--EEYEEL 664
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564364065 1089 VEEKAKQTSEILAAQNllqkqpvPLEQVEALKTSLNGTIEHLKEEL---RSKERCLEREQQAVSQLQQLLE 1156
Cdd:PRK03918 665 REEYLELSRELAGLRA-------ELEELEKRREEIKKTLEKLKEELeerEKAKKELEKLEKALERVEELRE 728
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
699-1324 |
2.21e-13 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 75.06 E-value: 2.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 699 ELGKKVTELTLKNQTLQKEVEKLYADNKLLNQQVHSLTVEMKTRYVPLRVSEEMKKAHDVNVEDLNKKLSdatqryaEKK 778
Cdd:TIGR04523 79 ILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIK-------KKE 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 779 LEAERLLAENDKLTKNVSRLEAVFvapEKHEKELMGLKSNIAELKMQLCELNKKCGEGQEKIralmSENTSLKKTLSSQy 858
Cdd:TIGR04523 152 KELEKLNNKYNDLKKQKEELENEL---NLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKI----QKNKSLESQISEL- 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 859 vpakthEEVKASLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLENVQNQmkadyvsLEEHSRKMNMANQSL 938
Cdd:TIGR04523 224 ------KKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKE-------LEQNNKKIKELEKQL 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 939 KEAQdahTALLADYRQGQEEIV-TLHAEIKAQKKELDTIQeciklkyAPLSRMEECERKFKATEKALKEQLSEQTHKGQV 1017
Cdd:TIGR04523 291 NQLK---SEISDLNNQKEQDWNkELKSELKNQEKKLEEIQ-------NQISQNNKIISQLNEQISQLKKELTNSESENSE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1018 RDEEVKKGKQENERLRKDLAALQKELKDrnvlveeareaeralsrkteeLGKQLKELSQKYSDVKSEREKLVEEKAKQTS 1097
Cdd:TIGR04523 361 KQRELEEKQNEIEKLKKENQSYKQEIKN---------------------LESQINDLESKIQNQEKLNQQKDEQIKKLQQ 419
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1098 EilaaQNLLQKQpvpLEQVEALKTSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLLEnqksssvtladhlqlkeALEK 1177
Cdd:TIGR04523 420 E----KELLEKE---IERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLK-----------------VLSR 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1178 EVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLETRevvdMSKYKATKNDLETQISNLNDKLASLNRKYDQVC 1257
Cdd:TIGR04523 476 SINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKK----ISSLKEKIEKLESEKKEKESKISDLEDELNKDD 551
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564364065 1258 EEKVSAKDEKELLHLNieQEIRDQKERCDKSLTTIMELQQRIQESA-------KQIEAKDNKITELLNDVERLK 1324
Cdd:TIGR04523 552 FELKKENLEKEIDEKN--KEIEELKQTQKSLKKKQEEKQELIDQKEkekkdliKEIEEKEKKISSLEKELEKAK 623
|
|
| PHA03095 |
PHA03095 |
ankyrin-like protein; Provisional |
44-254 |
2.38e-13 |
|
ankyrin-like protein; Provisional
Pssm-ID: 222980 [Multi-domain] Cd Length: 471 Bit Score: 74.29 E-value: 2.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 44 AERGDVEKVSSILAKKGvhpgklDVE-----GRSAFHVVAAKGN---LECLNAILTHGIDVATRDSAGRNALHLAAKYGH 115
Cdd:PHA03095 22 ASNVTVEEVRRLLAAGA------DVNfrgeyGKTPLHLYLHYSSekvKDIVRLLLEAGADVNAPERCGFTPLHLYLYNAT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 116 ALCLQKLL-QYNCPTEHVDLQGRTALHDAAMADC--PSSIQLLCDHGASVNAKDIDGRTPL--VLATQMCRPTICQLLID 190
Cdd:PHA03095 96 TLDVIKLLiKAGADVNAKDKVGRTPLHVYLSGFNinPKVIRLLLRKGADVNALDLYGMTPLavLLKSRNANVELLRLLID 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 191 RGADVNSRDKQNRTALMLGCEYgCRD---AVEVLVRNGADLTLLDALGHDSSYYARIGD---NLDILNLL 254
Cdd:PHA03095 176 AGADVYAVDDRFRSLLHHHLQS-FKPrarIVRELIRAGCDPAATDMLGNTPLHSMATGSsckRSLVLPLL 244
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
665-1331 |
4.00e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 74.72 E-value: 4.00e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 665 EIRQLKRDLESVRaqhirpEEHEQLRSRLEQKSGELGK--KVTELTLKNQTLQKEVEKLYADNKLLNQQVHsltvemktr 742
Cdd:TIGR02169 171 KKEKALEELEEVE------ENIERLDLIIDEKRQQLERlrREREKAERYQALLKEKREYEGYELLKEKEAL--------- 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 743 yvplrvsEEMKKAHDVNVEDLNKKLSDATQRYAEKKLEAERLLAENDKLTKNVSRL---EAVFVAPEKHE--KELMGLKS 817
Cdd:TIGR02169 236 -------ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeEQLRVKEKIGEleAEIASLER 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 818 NIAELKMQLCELNKKCGEGQEKIRALMSENTSLKKTLSSQYVPAKTHEEVKASLSSTLEKTNRALLDSKKRLDDTSQEFS 897
Cdd:TIGR02169 309 SIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 898 KLREENEVLRRNLENVQNQMKADYVSLEEHSRKMNMANQSLKEAQDAHTALladyrqgQEEIVTLHAEIKAQKKELDTIQ 977
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINEL-------EEEKEDKALEIKKQEWKLEQLA 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 978 ECIKLKYAPLSRMEECERKFKATEKALKEQLSEQTHKGQVRDEEVKKGKQENERLRKDL------------------AAL 1039
Cdd:TIGR02169 462 ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIqgvhgtvaqlgsvgeryaTAI 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1040 QKELKDR--NVLVEEAREAERALS-RKTEELGK-----------------------------QLKELSQKY--------- 1078
Cdd:TIGR02169 542 EVAAGNRlnNVVVEDDAVAKEAIElLKRRKAGRatflplnkmrderrdlsilsedgvigfavDLVEFDPKYepafkyvfg 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1079 -----SDVKSERE------------KLVEEKAKQTSEILAAQNLLQKQPVPLEQVEalktSLNGTIEHLKEELRSKERCL 1141
Cdd:TIGR02169 622 dtlvvEDIEAARRlmgkyrmvtlegELFEKSGAMTGGSRAPRGGILFSRSEPAELQ----RLRERLEGLKRELSSLQSEL 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1142 EREQQAVSQLQQLLENQKSSSVTL-ADHLQLKEALEKEVGIMKASLREKEEESQKKT----------KEVSKLQTEVQNT 1210
Cdd:TIGR02169 698 RRIENRLDELSQELSDASRKIGEIeKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEnvkselkeleARIEELEEDLHKL 777
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1211 KQALKNLETREvvDMSKYK---ATKNDLETQISNLNDKLASLNRKYDQVCEEKVSAKDEKEllhlNIEQEIRDQKERcdk 1287
Cdd:TIGR02169 778 EEALNDLEARL--SHSRIPeiqAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ----ELQEQRIDLKEQ--- 848
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 564364065 1288 slttIMELQQRIQESAKQIEAKDNKITELLNDVERLKQALNGLS 1331
Cdd:TIGR02169 849 ----IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK 888
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
307-1090 |
4.12e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.71 E-value: 4.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 307 DLKEKLRKIQQeqRILLDKVNGLQLQLNEEVMVADDLESEREKLKSLLAAKEKQHEESLRTIEALKNRFKYFESDHpgpg 386
Cdd:TIGR02168 217 ELKAELRELEL--ALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL---- 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 387 sYSSNRKEDMLHKQGQMYTADsqctspgvpphmQSRSMLRPLELSLPSQTSYSENEILKKELEAMRTFCDSAKQDRLKLQ 466
Cdd:TIGR02168 291 -YALANEISRLEQQKQILRER------------LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 467 NELAHKVAECKALalecERVKEDSDEQIKQLEDALKDVQKRMYESEGKVKQMQTHFLALKEHLTNEAATGS--------- 537
Cdd:TIGR02168 358 AELEELEAELEEL----ESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEellkkleea 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 538 -----HRVIEELREQLKDMKGKYEGASAEVGKLRNQIKQSEMLVEGFKRDESRL----------VEENKRLQKECSTCEI 602
Cdd:TIGR02168 434 elkelQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLqarldslerlQENLEGFSEGVKALLK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 603 DRERRGRRVTELEGQLK-----ELGAKLAL-----SVPTETFESMKSSLSNDISEKAKRLA------EVGRDYESSQGEI 666
Cdd:TIGR02168 514 NQSGLSGILGVLSELISvdegyEAAIEAALggrlqAVVVENLNAAKKAIAFLKQNELGRVTflpldsIKGTEIQGNDREI 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 667 RQLKR-------DLESVR----------------------AQHIRPEEHEQLR-----SRLEQKSGELGKKVTELTLKNQ 712
Cdd:TIGR02168 594 LKNIEgflgvakDLVKFDpklrkalsyllggvlvvddldnALELAKKLRPGYRivtldGDLVRPGGVITGGSAKTNSSIL 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 713 TLQKEVEKLYADNKLLNQQVHSLTVEMKTRYVPLRVSEEMKKAHDVNVEDLNKKLSDATQRYAEKKLEAERLLAENDKLT 792
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 793 KNVSRLEAvfvapekhekELMGLKSNIAELKMQLCELNKKCGEGQEKIRALMSENTSLKKTLSSQYVPAKTHEEVKASLS 872
Cdd:TIGR02168 754 KELTELEA----------EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 873 STLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLENVQNQMKADYVSLEEHSRKMNMANQSLKEAQDAHTALLADY 952
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 953 RQGQEEIVTLHAEIKAQKKELDTIQEciklkyaplsRMEecerKFKATEKALKEQLSEQTH-KGQVRDEEVKKGKQENER 1031
Cdd:TIGR02168 904 RELESKRSELRRELEELREKLAQLEL----------RLE----GLEVRIDNLQERLSEEYSlTLEEAEALENKIEDDEEE 969
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*....
gi 564364065 1032 LRKDLAALQKELKDRNVLVEEAREAeralsrkTEELGKQLKELSQKYSDVKSEREKLVE 1090
Cdd:TIGR02168 970 ARRRLKRLENKIKELGPVNLAAIEE-------YEELKERYDFLTAQKEDLTEAKETLEE 1021
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
444-1210 |
5.08e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 74.38 E-value: 5.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 444 LKKELEAMRTFCDSAKQDRLKLQNELAHKVAECKALALECERVKEDSDEQIKQLedalkdvQKRMYESEGKVKQMQTHFL 523
Cdd:pfam15921 122 MQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQL-------RKMMLSHEGVLQEIRSILV 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 524 ALKEHLTNEAATGSHRVIEELREQLKDMKGKYEGASAEVGKLRNQIKQSEMLVEGFKRDESRLVEenKRLQKEcstceid 603
Cdd:pfam15921 195 DFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIE--LLLQQH------- 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 604 RERRGRRVTELEGQLKELgaklalsvpTETFESMKSSlSNDISEKAKRLAEVGRDYESSQgeIRQLKrDLESVRAQhIRP 683
Cdd:pfam15921 266 QDRIEQLISEHEVEITGL---------TEKASSARSQ-ANSIQSQLEIIQEQARNQNSMY--MRQLS-DLESTVSQ-LRS 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 684 EEHEQLRSrLEQKSGELGKkvtELTLKNQTL---QKEVEKLYADNKLLNQQVHSLTVEMKTRYVPLRVSEEMkkahdvnv 760
Cdd:pfam15921 332 ELREAKRM-YEDKIEELEK---QLVLANSELteaRTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQ-------- 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 761 edlNKKLSDatqRYAEKKLEAERLLAENDKLTKNVSRLEAVFVAPE-----KHEKELMGLKSNIAELKmQLCELNKKCGE 835
Cdd:pfam15921 400 ---NKRLWD---RDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKsecqgQMERQMAAIQGKNESLE-KVSSLTAQLES 472
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 836 GQEKIRALMSENTSLKKTLSSQyvpAKTHEEVKASLSS---TLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRrnleN 912
Cdd:pfam15921 473 TKEMLRKVVEELTAKKMTLESS---ERTVSDLTASLQEkerAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLR----N 545
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 913 VQNQMKADYVSLEEHSRKMNMANQSLKE-----AQDAHTALLADYRQGQeeivtLHAEIKAQKKELdtiQECIKLKYAPL 987
Cdd:pfam15921 546 VQTECEALKLQMAEKDKVIEILRQQIENmtqlvGQHGRTAGAMQVEKAQ-----LEKEINDRRLEL---QEFKILKDKKD 617
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 988 SRMEECERKFkateKALKEQLSEQTHKGQVRDEEVKKGKQENERLRKDLAALQKELkdrNVLVEEAREAERALSRKTEEL 1067
Cdd:pfam15921 618 AKIRELEARV----SDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNEL---NSLSEDYEVLKRNFRNKSEEM 690
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1068 GKQLKELSQKYSDVKSE----REKLVEEKAKQTSEILAAQNLLQKQPVPLEQVEALKTSlngtIEHLKEELR--SKERCL 1141
Cdd:pfam15921 691 ETTTNKLKMQLKSAQSEleqtRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSK----IQFLEEAMTnaNKEKHF 766
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564364065 1142 EREQQavSQLQQLLENQKSSSVTLADHLQLKEALEK---------EVGIMKASLREKEEESQKKTKEVSKLQTEVQNT 1210
Cdd:pfam15921 767 LKEEK--NKLSQELSTVATEKNKMAGELEVLRSQERrlkekvanmEVALDKASLQFAECQDIIQRQEQESVRLKLQHT 842
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1041-1406 |
7.02e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 7.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1041 KELKDRnvlvEEAREAERALSRKtEELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEILAAQNLLQKQpvpLEQVEALK 1120
Cdd:COG1196 216 RELKEE----LKELEAELLLLKL-RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEEL---ELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1121 TSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLLENQKSSSVTLADHLQLKEALEKEVGIMKASLREKEEESQKKTKEV 1200
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1201 SKLQTEVQNTKQALKNLETREVVDMSKYKATKNDLETQISNLNDKLASLNRKYDQVcEEKVSAKDEKELLHLNIEQEIRD 1280
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEEL-EELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1281 QKERCDKSLTTIMELQQRIQESAKQIEAKDNKITELLNDVERLKQALNGLSQLTyssggpTKRQSQLVDTLQQRVRDLQQ 1360
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE------ADYEGFLEGVKAALLLAGLR 520
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 564364065 1361 QLADADRQHQEVIAIYRTHLLSAAQGHMDEDVQAALLQIIQMRQGL 1406
Cdd:COG1196 521 GLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYL 566
|
|
| PHA02874 |
PHA02874 |
ankyrin repeat protein; Provisional |
40-263 |
1.14e-12 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 165205 [Multi-domain] Cd Length: 434 Bit Score: 71.92 E-value: 1.14e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 40 LMKAAERGDVEKVSSILaKKGVHPGKLDVEGRSAFHVVAAKGNLECLNAILTHGIDVATRDSAGRNALHLAAKYGHALCL 119
Cdd:PHA02874 128 LHYAIKKGDLESIKMLF-EYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACI 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 120 QKLLQYncpTEHVDLQ---GRTALHDAAMADcPSSIQLLCDHgASVNAKDIDGRTPLVLATQM-CRPTICQLLIDRGADV 195
Cdd:PHA02874 207 KLLIDH---GNHIMNKcknGFTPLHNAIIHN-RSAIELLINN-ASINDQDIDGSTPLHHAINPpCDIDIIDILLYHKADI 281
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564364065 196 NSRDKQNRTALMLGCEYGCRDAV-------EVLVRNGADLTLLDALGHDSsyyarIGDNLDILNLLKTASESTSK 263
Cdd:PHA02874 282 SIKDNKGENPIDTAFKYINKDPVikdiianAVLIKEADKLKDSDFLEHIE-----IKDNKEFSDFIKECNEEIED 351
|
|
| Ank_2 |
pfam12796 |
Ankyrin repeats (3 copies); |
40-127 |
2.88e-12 |
|
Ankyrin repeats (3 copies);
Pssm-ID: 463710 [Multi-domain] Cd Length: 91 Bit Score: 63.98 E-value: 2.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 40 LMKAAERGDVEKVSsILAKKGVHPGKLDVEGRSAFHVVAAKGNLECLNAILTHGIdvATRDSAGRNALHLAAKYGHALCL 119
Cdd:pfam12796 1 LHLAAKNGNLELVK-LLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHAD--VNLKDNGRTALHYAARSGHLEIV 77
|
....*...
gi 564364065 120 QKLLQYNC 127
Cdd:pfam12796 78 KLLLEKGA 85
|
|
| PHA03100 |
PHA03100 |
ankyrin repeat protein; Provisional |
82-254 |
3.68e-12 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 222984 [Multi-domain] Cd Length: 422 Bit Score: 70.08 E-value: 3.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 82 NLECLNAILTHGIDVATRDSAGRNALHLAAKYGHALCLQK-----LLQYNCPTEHVDLQGRTALHDAAMADC--PSSIQL 154
Cdd:PHA03100 47 NIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKeivklLLEYGANVNAPDNNGITPLLYAISKKSnsYSIVEY 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 155 LCDHGASVNAKDIDGRTPLVLATQMCRPT--ICQLLIDRGADVN----------------SRDKQNRTALMLGCEYGCRD 216
Cdd:PHA03100 127 LLDNGANVNIKNSDGENLLHLYLESNKIDlkILKLLIDKGVDINaknrvnyllsygvpinIKDVYGFTPLHYAVYNNNPE 206
|
170 180 190
....*....|....*....|....*....|....*...
gi 564364065 217 AVEVLVRNGADLTLLDALGHDSSYYARIGDNLDILNLL 254
Cdd:PHA03100 207 FVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLL 244
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
468-1200 |
4.14e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 71.25 E-value: 4.14e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 468 ELAHKVAECKALALECERVKEDSDEQIKQLEDALKDVQKRMYESEGKVKQMQTHFLALKEHLTNEAAtgshrVIEELREQ 547
Cdd:TIGR02169 298 ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKE-----ELEDLRAE 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 548 LKDMKGKYEGASAEVGKLRNQIKQSEMLVEGFKRDESRLVEENKRLQKECSTCEIDRERRGRRVTELEGQLKELGAKLal 627
Cdd:TIGR02169 373 LEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEI-- 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 628 svptETFESMKSSLSNDISEKAKRLAEVGRDYESSQGEIRQLKRDLESV--RAQHIRPEEHEQLRSRLEQKSGELG--KK 703
Cdd:TIGR02169 451 ----KKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAeaQARASEERVRGGRAVEEVLKASIQGvhGT 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 704 VTELTLKNQTLQKEVEkLYADNKLLNQQVHSLTVE------MKTR------YVPLRvseEMKKAHdvnvEDLNKKLSDAT 771
Cdd:TIGR02169 527 VAQLGSVGERYATAIE-VAAGNRLNNVVVEDDAVAkeaielLKRRkagratFLPLN---KMRDER----RDLSILSEDGV 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 772 QRYA------EKKLEAERLLAENDKLTknVSRLEA----------VFVAPEKHEK---------ELMGLKSNIAELKMQL 826
Cdd:TIGR02169 599 IGFAvdlvefDPKYEPAFKYVFGDTLV--VEDIEAarrlmgkyrmVTLEGELFEKsgamtggsrAPRGGILFSRSEPAEL 676
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 827 CELNKKCGEGQEKIRALMSENTSLKKTLSsqyvpaktheevkaSLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVL 906
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLD--------------ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 907 RRNLENVQNQMKADYVSLEEHSRKMNMANQSLKEAQDAHTALLADYRQGQ-EEIVTLHAEIKAQKKELDTIQECIKLKYA 985
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRIEARLREIEQKLN 822
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 986 PLSRMEECERKFKATEKALKEQLSEQthkgqvRDEEvkkgKQENERLRKDLAALQKELKDRNVLVEEAREAERALSRKTE 1065
Cdd:TIGR02169 823 RLTLEKEYLEKEIQELQEQRIDLKEQ------IKSI----EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERD 892
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1066 ELGKQLKELSQKYSDVKSEREKLvEEKAKQTSEILAA--QNLLQKQPVPLEQVEALKTSLngTIEHLKEELRSkercLER 1143
Cdd:TIGR02169 893 ELEAQLRELERKIEELEAQIEKK-RKRLSELKAKLEAleEELSEIEDPKGEDEEIPEEEL--SLEDVQAELQR----VEE 965
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 564364065 1144 EQQAVSQLQQLLENQKSSSVTLADHLQLKEA-LEKEvgimKASLREKEEESQKKTKEV 1200
Cdd:TIGR02169 966 EIRALEPVNMLAIQEYEEVLKRLDELKEKRAkLEEE----RKAILERIEEYEKKKREV 1019
|
|
| PHA03095 |
PHA03095 |
ankyrin-like protein; Provisional |
47-247 |
6.23e-12 |
|
ankyrin-like protein; Provisional
Pssm-ID: 222980 [Multi-domain] Cd Length: 471 Bit Score: 69.67 E-value: 6.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 47 GDVEKVSSILAKKGVHPGKLDVEGRSAFHVVAAKGN-LECLNAILTHGIDVATRDSAGRNALH--LAAKYGHALCLQKLL 123
Cdd:PHA03095 60 EKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATtLDVIKLLIKAGADVNAKDKVGRTPLHvyLSGFNINPKVIRLLL 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 124 QYNCPTEHVDLQGRTALH------DAamadCPSSIQLLCDHGASVNAKDIDGRTPLVLATQMCRP--TICQLLIDRGADV 195
Cdd:PHA03095 140 RKGADVNALDLYGMTPLAvllksrNA----NVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPraRIVRELIRAGCDP 215
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564364065 196 NSRDKQNRTALMLGCEYG-CRDA-VEVLVRNGADLTLLDALGHDSSYYARIGDN 247
Cdd:PHA03095 216 AATDMLGNTPLHSMATGSsCKRSlVLPLLIAGISINARNRYGQTPLHYAAVFNN 269
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
462-1007 |
8.19e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.09 E-value: 8.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 462 RLKLQNELAHKVAECKALALECERVKEDSDEQIKQLEDALKDVQKRMYESEGKVKQMQ------THFLALKEHLTN---- 531
Cdd:PRK03918 229 EVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKelkekaEEYIKLSEFYEEylde 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 532 -----EAATGSHRVIEELREQLKDMKGKyegaSAEVGKLRNQIKQSEMLVEGFKRDEsRLVEENKRLQKECStcEIDRER 606
Cdd:PRK03918 309 lreieKRLSRLEEEINGIEERIKELEEK----EERLEELKKKLKELEKRLEELEERH-ELYEEAKAKKEELE--RLKKRL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 607 RGRRVTELEGQLKEL-GAKLALSVPTETFESMKSSLSNDISEKAKRLAEVgrdyESSQGEIRQLKRDLESvraqhirpEE 685
Cdd:PRK03918 382 TGLTPEKLEKELEELeKAKEEIEEEISKITARIGELKKEIKELKKAIEEL----KKAKGKCPVCGRELTE--------EH 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 686 HEQLRSRLEQKSGELGKKVTELTLKNQTLQKEVEKLyaDNKLLNQqvhSLTVEMKTRYVPLRVSEEMKKAHdvNVEDLNK 765
Cdd:PRK03918 450 RKELLEEYTAELKRIEKELKEIEEKERKLRKELREL--EKVLKKE---SELIKLKELAEQLKELEEKLKKY--NLEELEK 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 766 klsdatqryaeKKLEAERLLAENDKLTKNVSRLEAVFVAPEKHEKELMGLKSNIAELKMQLCELNKKCGE-GQEKIRALM 844
Cdd:PRK03918 523 -----------KAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEElGFESVEELE 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 845 SENTSLKKtLSSQYVPAKTHEEVKASLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLenvqnqmkadyvSL 924
Cdd:PRK03918 592 ERLKELEP-FYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY------------SE 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 925 EEHSRKMNMAnQSLKEAQDAHTALLADYRQGQEEIVTLHAEIKAQKKELDTIQECIKLKYAPLSRMEECERKFKATEKAL 1004
Cdd:PRK03918 659 EEYEELREEY-LELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALL 737
|
...
gi 564364065 1005 KEQ 1007
Cdd:PRK03918 738 KER 740
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
936-1232 |
8.22e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 8.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 936 QSLKEAQDA--HTALLADYRQGQEEIVTLHAEIKAQKKELDTIQECIKLKYAplsRMEECERKFKATEKALKEQLSEQTH 1013
Cdd:COG1196 216 RELKEELKEleAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEA---ELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1014 KGQVRDEEVKKGKQENERLRKDLAALQKELKDRNVLVEEAREAERALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKA 1093
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1094 KQTSEILAAQNLLQKQPVPLEQVEALKTSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLLENQKSSSVTLADHLQLKE 1173
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 564364065 1174 ALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLETREVVDMSKYKATK 1232
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK 511
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
781-1372 |
8.92e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.09 E-value: 8.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 781 AERLLAENDKLTKNVSRLEAVFVAPEKHEKELMGLKSNIAELKMQLCELNKKCGEGQEKIRALMSENTSLKKTlssqyvp 860
Cdd:PRK03918 164 YKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEEL------- 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 861 aktheevkASLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLENVQNQMKadyvsleehsrkmnmanqSLKE 940
Cdd:PRK03918 237 --------KEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK------------------ELKE 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 941 AQDAHTALLADYRQGQEEIVTLHAEIKAQKKELDTIQECIKLKYAPLSRMEECERKFKATEKALKEQlsEQTHKGQvrdE 1020
Cdd:PRK03918 291 KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEEL--EERHELY---E 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1021 EVKKGKQENERLRKDLAALQKElkDRNVLVEEAREAERALSRKTEELGKQLKELSQKYSDVKSEREKLveEKAKQTSEIL 1100
Cdd:PRK03918 366 EAKAKKEELERLKKRLTGLTPE--KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL--KKAKGKCPVC 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1101 AAQ-------NLLQKQPVPLEQVEALKTSLNGTIEHLKEELRSKERCLEREQQaVSQLQQLLEnqksssvtladhlQLKE 1173
Cdd:PRK03918 442 GRElteehrkELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESE-LIKLKELAE-------------QLKE 507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1174 ALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLETREvVDMSKYKATKNDLETQISNLNDKLASLNRKY 1253
Cdd:PRK03918 508 LEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELK-KKLAELEKKLDELEEELAELLKELEELGFES 586
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1254 DQVCEEKVSAKDE--KELLHL-NIEQEIRDQKERCDKSLTTIMELQQRIQESAKQIEAKDNKITELL-----NDVERLKQ 1325
Cdd:PRK03918 587 VEELEERLKELEPfyNEYLELkDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEkkyseEEYEELRE 666
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 564364065 1326 ALNGLSQLTYSSGGPTKRQSQLVDTLQQRVRDLQQQLADADRQHQEV 1372
Cdd:PRK03918 667 EYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL 713
|
|
| PHA02874 |
PHA02874 |
ankyrin repeat protein; Provisional |
50-237 |
9.74e-12 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 165205 [Multi-domain] Cd Length: 434 Bit Score: 68.84 E-value: 9.74e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 50 EKVSSILaKKGVHPGKLDVEGRSAFHVVAAKGNLECLNAILTHGIDVATRDSAGRNALHLAAKYGHALCLQKLLQYNCPT 129
Cdd:PHA02874 105 DMIKTIL-DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 130 EHVDLQGRTALHDAAMADCPSSIQLLCDHGASVNAKDIDGRTPLVLATQMCRPTIcQLLIDrGADVNSRDKQNRTALMLG 209
Cdd:PHA02874 184 NVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAI-ELLIN-NASINDQDIDGSTPLHHA 261
|
170 180
....*....|....*....|....*....
gi 564364065 210 CEYGC-RDAVEVLVRNGADLTLLDALGHD 237
Cdd:PHA02874 262 INPPCdIDIIDILLYHKADISIKDNKGEN 290
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
773-1371 |
2.04e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 2.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 773 RYAEKKLEAERLLAENDKltkNVSRLEAVfvapekhekelmglksnIAELKMQLCELNKKcGEGQEKIRALMSENTSLKK 852
Cdd:TIGR02168 169 KYKERRKETERKLERTRE---NLDRLEDI-----------------LNELERQLKSLERQ-AEKAERYKELKAELRELEL 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 853 TLSS-QYVPAKTH----EEVKASLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLENVQNQMKADYVSLEEH 927
Cdd:TIGR02168 228 ALLVlRLEELREEleelQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQIL 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 928 SRKMNMANQSLKEAQdahtallADYRQGQEEIVTLHAEIKAQKKELDTIQECIKLKYAPLSRMEECERKFKATEKALKEQ 1007
Cdd:TIGR02168 308 RERLANLERQLEELE-------AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1008 LSEQthKGQVRDEEVKKGKQENE--RLRKDLAALQKElkdRNVLVEEAREAERALSR-KTEELGKQLKELSQKYSDVKSE 1084
Cdd:TIGR02168 381 LETL--RSKVAQLELQIASLNNEieRLEARLERLEDR---RERLQQEIEELLKKLEEaELKELQAELEELEEELEELQEE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1085 REKLVEEKAKQTSEILAAQNLLQKQPVPLEQVEALKTSLNGTIEHLKEELRS-KERCLEREQQA--VSQLQQLLEN---- 1157
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGvKALLKNQSGLSgiLGVLSELISVdegy 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1158 QKSSSVTLADHLQL-----KEALEKEVGIMKASLREKE---EESQKKTKEVSKLQTEVQNTKQALKNLETREVVDMSKYK 1229
Cdd:TIGR02168 536 EAAIEAALGGRLQAvvvenLNAAKKAIAFLKQNELGRVtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLR 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1230 ATKNDL------ETQISNLNDKLASLNRKYDQVCE--EKVSAK-------DEKELLHLNIEQEIRDQKERCDkslttimE 1294
Cdd:TIGR02168 616 KALSYLlggvlvVDDLDNALELAKKLRPGYRIVTLdgDLVRPGgvitggsAKTNSSILERRREIEELEEKIE-------E 688
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564364065 1295 LQQRIQESAKQIEAKDNKITELLNDVERLKQALNGLSQLTYSSGGPTKRQSQLVDTLQQRVRDLQQQLADADRQHQE 1371
Cdd:TIGR02168 689 LEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEE 765
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
484-1311 |
4.76e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 67.84 E-value: 4.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 484 ERVKEDSDEQIKqledalkDVQKRMYESEgKVKQMQTHFlaLKEHLTNEAATGSHRVIEelREQLKDMKgKYEGASAEvg 563
Cdd:pfam15921 77 ERVLEEYSHQVK-------DLQRRLNESN-ELHEKQKFY--LRQSVIDLQTKLQEMQME--RDAMADIR-RRESQSQE-- 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 564 KLRNQIKQSEMLVEGFKRDESRLVEEnkrlqkecSTCEIDRERrgRRVTELEGQLKELGAKLA-------------LSVP 630
Cdd:pfam15921 142 DLRNQLQNTVHELEAAKCLKEDMLED--------SNTQIEQLR--KMMLSHEGVLQEIRSILVdfeeasgkkiyehDSMS 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 631 TETFESMKSSLSndisekaKRLAEVGRDYESSQGEIRQLKRDLESVRAQHIRPEE--HEQLRSRLEQKSGELGKKVTELT 708
Cdd:pfam15921 212 TMHFRSLGSAIS-------KILRELDTEISYLKGRIFPVEDQLEALKSESQNKIEllLQQHQDRIEQLISEHEVEITGLT 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 709 LKNQTLQKEVEKLYADNKLLNQQVHSLTV-------EMKTRYVPLRVS-EEMKKAHDVNVEDLNKKLSDATQRYAEKKLE 780
Cdd:pfam15921 285 EKASSARSQANSIQSQLEIIQEQARNQNSmymrqlsDLESTVSQLRSElREAKRMYEDKIEELEKQLVLANSELTEARTE 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 781 AERLLAENDKLTKNVSRLEAVFvapEKHEKEL--------------MGLKSNIAELKMQLCELNKKCGEGQEKIRALMSE 846
Cdd:pfam15921 365 RDQFSQESGNLDDQLQKLLADL---HKREKELslekeqnkrlwdrdTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSE 441
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 847 ntslkktlssqyvpaktheevkasLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLEnvqnQMKADYVSLEE 926
Cdd:pfam15921 442 ------------------------CQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVE----ELTAKKMTLES 493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 927 HSRKMNMANQSLKEAQDAHTALLAdyrqgqeEIVTLHAEIKAQKKELDTiqeciklkyapLSRMEECERKFKATEKALKE 1006
Cdd:pfam15921 494 SERTVSDLTASLQEKERAIEATNA-------EITKLRSRVDLKLQELQH-----------LKNEGDHLRNVQTECEALKL 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1007 QLSEQTHKGQVRDEEVKKGKQ---ENER----LRKDLAALQKELKDRNVLVEEAreaeRALSRKTEelgKQLKELSQKYS 1079
Cdd:pfam15921 556 QMAEKDKVIEILRQQIENMTQlvgQHGRtagaMQVEKAQLEKEINDRRLELQEF----KILKDKKD---AKIRELEARVS 628
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1080 DVKSEREKLVEEKAKQtseILAAQNLLQKQPVPLEQVEALKTSLNGTIEH---LKEELRSKERCLE--------REQQAV 1148
Cdd:pfam15921 629 DLELEKVKLVNAGSER---LRAVKDIKQERDQLLNEVKTSRNELNSLSEDyevLKRNFRNKSEEMEtttnklkmQLKSAQ 705
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1149 SQLQQLLENQKSSSVTLADHLQLKEALEKEVgimkASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLETREVVDMSKY 1228
Cdd:pfam15921 706 SELEQTRNTLKSMEGSDGHAMKVAMGMQKQI----TAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTV 781
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1229 KATKND-------LETQISNLNDKLASLNRKYDQVCEEKVSAKD-----EKELLHLNIEQEIrDQKERCDKSLTTIMELQ 1296
Cdd:pfam15921 782 ATEKNKmagelevLRSQERRLKEKVANMEVALDKASLQFAECQDiiqrqEQESVRLKLQHTL-DVKELQGPGYTSNSSMK 860
|
890
....*....|....*
gi 564364065 1297 QRIQESAKQIEAKDN 1311
Cdd:pfam15921 861 PRLLQPASFTRTHSN 875
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
491-1294 |
8.78e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 66.58 E-value: 8.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 491 DEQIKQLEDALKDVQKRMYESEGKVKQMQTHFLALKEHLTNeaatgSHRVIEELREQLKDMKgkyegasaevgklrNQIK 570
Cdd:TIGR04523 32 DTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINN-----SNNKIKILEQQIKDLN--------------DKLK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 571 QSEMLVEGFKRDESRLVEE--NKRLQKECSTCEIDRerrgrrvteLEGQLKELGAKLALsVPTETFEsmKSSLSNDISEK 648
Cdd:TIGR04523 93 KNKDKINKLNSDLSKINSEikNDKEQKNKLEVELNK---------LEKQKKENKKNIDK-FLTEIKK--KEKELEKLNNK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 649 AKRLAEVGRDYESSQ----GEIRQLKRDLESVRAQHIRPEEHEQLRSRLEQKSGELGKKVTELTLKNQTLQKEVEKLyad 724
Cdd:TIGR04523 161 YNDLKKQKEELENELnlleKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKK--- 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 725 NKLLNQQVhsltvemktryvplrvsEEMKKAHDvNVEDLNKKLSDATQRYAEKKLEAERLLAENDKLTKNVSRLEAVFVA 804
Cdd:TIGR04523 238 QQEINEKT-----------------TEISNTQT-QLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISD 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 805 --PEKHEKELMGLKSNIAELKMQLCELNKKCGEGQEKIRALMSENTSLKKTLssqyvpaktheevkaslsSTLEKTNRAL 882
Cdd:TIGR04523 300 lnNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKEL------------------TNSESENSEK 361
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 883 ldsKKRLDDTSQEFSKLREENEVLRRNLENVQNQMKADYVSLEEHSRKMNMANQSLKEAQdahtallADYRQGQEEIVTL 962
Cdd:TIGR04523 362 ---QRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQ-------QEKELLEKEIERL 431
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 963 HAEIKAQKKELDTIQECIKLKyaplsrmEECERKFKATEKALKEQLSEQThkgqvrdEEVKKGKQENERLRKDLAALQKE 1042
Cdd:TIGR04523 432 KETIIKNNSEIKDLTNQDSVK-------ELIIKNLDNTRESLETQLKVLS-------RSINKIKQNLEQKQKELKSKEKE 497
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1043 LKdrnvlveeareaerALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEILAAQNLLQKQPVPL--EQVEALK 1120
Cdd:TIGR04523 498 LK--------------KLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELkkENLEKEI 563
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1121 TSLNGTIEHLKEELRSkercLEREQqavSQLQQLLENQKSSSVTLADHLQLKEA----LEKEVGIMKASLREKEEESQKK 1196
Cdd:TIGR04523 564 DEKNKEIEELKQTQKS----LKKKQ---EEKQELIDQKEKEKKDLIKEIEEKEKkissLEKELEKAKKENEKLSSIIKNI 636
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1197 TKEVSKLQTEVQNTKQALKNLETREVVDMSKYKATKNDLETQISNLNDKLASLNRKYDQVCEEKVSAKDEKELL--HLNI 1274
Cdd:TIGR04523 637 KSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELSLHYKKYITRMIRIKDLPKLEekYKEI 716
|
810 820
....*....|....*....|
gi 564364065 1275 EQEIRDQKErCDKSLTTIME 1294
Cdd:TIGR04523 717 EKELKKLDE-FSKELENIIK 735
|
|
| PHA02875 |
PHA02875 |
ankyrin repeat protein; Provisional |
48-227 |
1.49e-10 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 165206 [Multi-domain] Cd Length: 413 Bit Score: 65.01 E-value: 1.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 48 DVEKVSsILAKKGVHPGKLDVEGRSAFHVVAAKGNLECLNAILTHGI---DVATRDsaGRNALHLAAKYGHALCLQKLLQ 124
Cdd:PHA02875 47 DSEAIK-LLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKfadDVFYKD--GMTPLHLATILKKLDIMKLLIA 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 125 YNCPTEHVDLQGRTALHDAAMADCPSSIQLLCDHGASVNAKDIDGRTPLVLATQMCRPTICQLLIDRGADVNSRDKQNRT 204
Cdd:PHA02875 124 RGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCV 203
|
170 180
....*....|....*....|....
gi 564364065 205 ALM-LGCEYGCRDAVEVLVRNGAD 227
Cdd:PHA02875 204 AALcYAIENNKIDIVRLFIKRGAD 227
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
782-1332 |
1.65e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 65.91 E-value: 1.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 782 ERLLAENDKLTKNVSRleAVFVAPEKHEKELMGLKSNIAELKMQLCELNKKcGEGQEKIRALMSEntslkktlssqyvpa 861
Cdd:pfam15921 77 ERVLEEYSHQVKDLQR--RLNESNELHEKQKFYLRQSVIDLQTKLQEMQME-RDAMADIRRRESQ--------------- 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 862 kTHEEVKASLSSTLEKTNRALLDSKKRLDDTSQEFSKLREenevLRRNLENVQNQMKADYVSLEEHSRKMNMANQSLKEA 941
Cdd:pfam15921 139 -SQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRK----MMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTM 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 942 --QDAHTALLADYRQGQEEIVTLHAEIKAQKKELDTIQECIKLKYAPL-----SRMEECERKFKATEKALKEQLSE---Q 1011
Cdd:pfam15921 214 hfRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLlqqhqDRIEQLISEHEVEITGLTEKASSarsQ 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1012 THKGQVRDEEVK-KGKQENERLRKDLAALQKELKDrnvLVEEAREAERALSRKTEELGKQLKELSQKYSDVKSEREKLVE 1090
Cdd:pfam15921 294 ANSIQSQLEIIQeQARNQNSMYMRQLSDLESTVSQ---LRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQ 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1091 EKAK---QTSEILAAQNLLQKQ-PVPLEQVEALKTSLNG---TIEHLKEELRS---------------KERC---LEREQ 1145
Cdd:pfam15921 371 ESGNlddQLQKLLADLHKREKElSLEKEQNKRLWDRDTGnsiTIDHLRRELDDrnmevqrleallkamKSECqgqMERQM 450
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1146 QA----------VSQLQQLLENQKSSSVTLADHLQLK----EALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTK 1211
Cdd:pfam15921 451 AAiqgkneslekVSSLTAQLESTKEMLRKVVEELTAKkmtlESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKL 530
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1212 QALKNLETRE--------VVDMSKYKATKND-----LETQISNLNDKLASLNRKYDQVCEEKvsAKDEKELLHLNIE-QE 1277
Cdd:pfam15921 531 QELQHLKNEGdhlrnvqtECEALKLQMAEKDkvieiLRQQIENMTQLVGQHGRTAGAMQVEK--AQLEKEINDRRLElQE 608
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564364065 1278 IRDQKercDKSLTTIMELQQRIQ----ESAKQIEAKDNKI----------TELLNDVERLKQALNGLSQ 1332
Cdd:pfam15921 609 FKILK---DKKDAKIRELEARVSdlelEKVKLVNAGSERLravkdikqerDQLLNEVKTSRNELNSLSE 674
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
921-1380 |
1.72e-10 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 65.90 E-value: 1.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 921 YVSLEEHSRKMNMANQSLK-EAQDAHTALLADYRQGQEEIVTLHAEIKaqkKELDTIQECIKLKYAPLSRMEECERKFKA 999
Cdd:pfam05483 185 YMDLNNNIEKMILAFEELRvQAENARLEMHFKLKEDHEKIQHLEEEYK---KEINDKEKQVSLLLIQITEKENKMKDLTF 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1000 TEKALKEQLSEQTHKGQVRDEEVKKGKQENERLRKDL----AALQKELKDRNVLVEEAREAERALSRKTEELGKQLKELS 1075
Cdd:pfam05483 262 LLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELedikMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1076 QKYSD------------------VKSEREKLveEKAKQTSEILAAQnlLQKQPVPLEQVEALKTSLNGTIEHLKEELRSK 1137
Cdd:pfam05483 342 KAKAAhsfvvtefeattcsleelLRTEQQRL--EKNEDQLKIITME--LQKKSSELEEMTKFKNNKEVELEELKKILAED 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1138 ERCLEREQQavsqLQQLLENQKSSSVTLADHLQLKEaleKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKqaLKNL 1217
Cdd:pfam05483 418 EKLLDEKKQ----FEKIAEELKGKEQELIFLLQARE---KEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEK--LKNI 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1218 ETREVVDMSKYKATKNDLETQ------------ISNLNDKLASLNRKYDQVCEEKVSAKDEKELLHLNIEQEIRDQKERC 1285
Cdd:pfam05483 489 ELTAHCDKLLLENKELTQEASdmtlelkkhqedIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKL 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1286 DKSLTTIMELQQRIQESAKQIEAKDNKITELLNDVERLKQALNGLSQLTYSSGGPTKRQSQLVDTLQQRVRDLQQQLADA 1365
Cdd:pfam05483 569 DKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASA 648
|
490
....*....|....*
gi 564364065 1366 DRQHQEVIAIYRTHL 1380
Cdd:pfam05483 649 KQKFEEIIDNYQKEI 663
|
|
| PHA02876 |
PHA02876 |
ankyrin repeat protein; Provisional |
39-254 |
1.95e-10 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 165207 [Multi-domain] Cd Length: 682 Bit Score: 65.47 E-value: 1.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 39 RLMKAAERGDVEKVSSILAKKGVHPGKLDVEGRSAFHVVAAKGNLECLNAILTHGIDVA--------------------- 97
Cdd:PHA02876 147 KLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNiialddlsvlecavdsknidt 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 98 ------TRDSAGRNALHLAAKYGHALCLQKLLQYNC--PTEHVDLQGRTALHDAAMAdcPSSIQL---LCDHGASVNAKD 166
Cdd:PHA02876 227 ikaiidNRSNINKNDLSLLKAIRNEDLETSLLLYDAgfSVNSIDDCKNTPLHHASQA--PSLSRLvpkLLERGADVNAKN 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 167 IDGRTPLVLATQMCRPT-ICQLLIDRGADVNSRDKQNRTALMLGCEYG-CRDAVEVLVRNGADLTLLDALGHDSSYYARI 244
Cdd:PHA02876 305 IKGETPLYLMAKNGYDTeNIRTLIMLGADVNAADRLYITPLHQASTLDrNKDIVITLLELGANVNARDYCDKTPIHYAAV 384
|
250
....*....|
gi 564364065 245 GDNLDILNLL 254
Cdd:PHA02876 385 RNNVVIINTL 394
|
|
| PHA02874 |
PHA02874 |
ankyrin repeat protein; Provisional |
82-242 |
2.38e-10 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 165205 [Multi-domain] Cd Length: 434 Bit Score: 64.60 E-value: 2.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 82 NLECLNAILTHGIDVATRDSAGRNALHLAAKYGHALCLQKLLQYNCPTEHVDLQGRTALHDAAMADCPSSIQLLCDHGAS 161
Cdd:PHA02874 103 EKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAY 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 162 VNAKDIDGRTPLVLATQMCRPTICQLLIDRGADVNSRDKQNRTALMLGCEYGcRDAVEVLVrNGADLTLLDALGHDSSYY 241
Cdd:PHA02874 183 ANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHN-RSAIELLI-NNASINDQDIDGSTPLHH 260
|
.
gi 564364065 242 A 242
Cdd:PHA02874 261 A 261
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
876-1365 |
2.60e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 65.06 E-value: 2.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 876 EKTNRALLDSKKRLDDTSQEFSKLREE-NEVLRRNLENVQNQMKADYVSLEEHSRKMNMANQSLKEAQDAHTALLADYRQ 954
Cdd:PRK02224 169 ERASDARLGVERVLSDQRGSLDQLKAQiEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 955 GQEEIVTLHAEIKaqkKELDTIQECIKLKYAPLSRMEECERKFKATEKALKEQLSEqthkGQVRDEEVKKGKQENERLRK 1034
Cdd:PRK02224 249 RREELETLEAEIE---DLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAE----AGLDDADAEAVEARREELED 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1035 DLAALQKELKDRNVLVEEAR-EAERA------LSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEILAAQNLLQ 1107
Cdd:PRK02224 322 RDEELRDRLEECRVAAQAHNeEAESLredaddLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1108 KQPVPLEQVEALKTSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLLENQK----------SSSV-TLADHLQLKEALE 1176
Cdd:PRK02224 402 DAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKcpecgqpvegSPHVeTIEEDRERVEELE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1177 KEVgimkASLREKEEESQKK---TKEVSKLQTEVQNTKQALKNLETRevvdmskykatkndletqisnLNDKLASLNRKY 1253
Cdd:PRK02224 482 AEL----EDLEEEVEEVEERlerAEDLVEAEDRIERLEERREDLEEL---------------------IAERRETIEEKR 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1254 DQvCEEKVSAKDEKELLHLNIEQEIRDQKERCDKSLTTIMELQQRIQESAKQIEAKDN------KITELLNDVERLKQAL 1327
Cdd:PRK02224 537 ER-AEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERirtllaAIADAEDEIERLREKR 615
|
490 500 510
....*....|....*....|....*....|....*...
gi 564364065 1328 NGLSQLTyssggpTKRQSQLvDTLQQRVRDLQQQLADA 1365
Cdd:PRK02224 616 EALAELN------DERRERL-AEKRERKRELEAEFDEA 646
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
775-1363 |
5.15e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 5.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 775 AEKKLEA--ERLLAENDK---LTKNVSRLE--------AVFVAPEKHEKELMGLKSNIAELKMQLCELNKKCGEGQEKIR 841
Cdd:COG1196 177 AERKLEAteENLERLEDIlgeLERQLEPLErqaekaerYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 842 ALMSENTSLKKTLssqyvpaktheevkASLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLENVQNQMKADY 921
Cdd:COG1196 257 ELEAELAELEAEL--------------EELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 922 VSLEEHSRKMNMANQSLKEAQDAHTALLADYRQGQEEIVTLHAEIKAQKKELDTIQEciklkyaplsRMEECERKFKATE 1001
Cdd:COG1196 323 EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE----------ELEELAEELLEAL 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1002 KALKEQLSEQTHKGQV---RDEEVKKGKQENERLRKDLAALQKELKDRNVLVEEAREAERALSRKTEELGKQLKELSQKY 1078
Cdd:COG1196 393 RAAAELAAQLEELEEAeeaLLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1079 SDVKSEREKLVEEKAKQTSEILAAQNLLQKQPVPLEQV-EALKTSLNGTIEHLKEELRSKERCLE--------------- 1142
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVkAALLLAGLRGLAGAVAVLIGVEAAYEaaleaalaaalqniv 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1143 -REQQAVSQLQQLLENQKSSSVT-----LADHLQLKEALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQALKN 1216
Cdd:COG1196 553 vEDDEVAAAAIEYLKAAKAGRATflpldKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1217 LETREVVDMSKYKATKNDLETQISNLNDKLASLNRKydQVCEEKVSAKDEKELLHLNIEQEIRDQKERCDKSLTTIMELQ 1296
Cdd:COG1196 633 EAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR--ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA 710
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564364065 1297 QRIQESAKQIEAKDNKITELLNDVERLKQALNGLSQLTYSSGGPTKRQSQLVDTLQQRVRDLQQQLA 1363
Cdd:COG1196 711 EAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
491-1094 |
1.22e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 1.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 491 DEQIKQLE-DALKDVQKRMYESEGKVKQMQTHFLALKEHLTNEAATgsHRVIEELREQLKDMKGKYEGASAEVGKLRNQI 569
Cdd:COG1196 199 ERQLEPLErQAEKAERYRELKEELKELEAELLLLKLRELEAELEEL--EAELEELEAELEELEAELAELEAELEELRLEL 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 570 KQSEMLVEGFKRDESRLVEENKRLQKECSTCEIDRERRGRRVTELEGQLKELGAKLALSvptetfESMKSSLSNDISEKA 649
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEEL------EEELEELEEELEEAE 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 650 KRLAEVGRDYESSQGEIRQLKRDLESVRAQHirpEEHEQLRSRLEQKSGELGKKVTELTLKNQTLQKEVEKLYADNKLLN 729
Cdd:COG1196 351 EELEEAEAELAEAEEALLEAEAELAEAEEEL---EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 730 QQVHSLTVEMKTRYVPLRVSEEMKKAHDVNVEDLNKKLSDATQRYAEKKLEAERLLAENDKLtknVSRLEAVFVAPEKHE 809
Cdd:COG1196 428 EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA---AARLLLLLEAEADYE 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 810 KELMGLKSniAELKMQLCELNKKCGE-------------------GQEKIRALMSENTSLKKTLSSQ------YVPAKTH 864
Cdd:COG1196 505 GFLEGVKA--ALLLAGLRGLAGAVAVligveaayeaaleaalaaaLQNIVVEDDEVAAAAIEYLKAAkagratFLPLDKI 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 865 EEVKASLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVLR----RNLENVQNQMKADYVSLEEHSRKMNMANQSLKE 940
Cdd:COG1196 583 RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRtlvaARLEAALRRAVTLAGRLREVTLEGEGGSAGGSL 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 941 AQDAHTALLADYRQGQEEIVTLHAEIKAQKKELDTIQEciklkyaplsRMEECERKFKATEKALKEQLSEQTHKGQVRDE 1020
Cdd:COG1196 663 TGGSRRELLAALLEAEAELEELAERLAEEELELEEALL----------AEEEEERELAEAEEERLEEELEEEALEEQLEA 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1021 EVKKGKQENERLRKDLAALQKELKDRNVLVEEAREAERALSRKTEELGK-------QLKELSQKYSDVKSEREKLVEEKA 1093
Cdd:COG1196 733 EREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPvnllaieEYEELEERYDFLSEQREDLEEARE 812
|
.
gi 564364065 1094 K 1094
Cdd:COG1196 813 T 813
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
542-1333 |
1.51e-09 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 62.76 E-value: 1.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 542 EELREQLKDMKGKYEGASAEVGKLRNQIKQSEMLVEGFKRDESRLVEE-NKRLQKECSTCEIDRERRGRRVTELEGQLKE 620
Cdd:TIGR00606 244 ENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKmEKVFQGTDEQLNDLYHNHQRTVREKERELVD 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 621 LGAKLA-LSVPTETFESMKSSLSNDISE---KAKRLAEVGRDYES------SQGEIRQLKRDLESVRAQHirpEEHEQLR 690
Cdd:TIGR00606 324 CQRELEkLNKERRLLNQEKTELLVEQGRlqlQADRHQEHIRARDSliqslaTRLELDGFERGPFSERQIK---NFHTLVI 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 691 SRLEQKSGELGKKVTELTLKNQTLQKEVEKLYADNKLLNQQVHSLTVEMKTRYVPLRvseemkkahdvNVEDLNKKLSDA 770
Cdd:TIGR00606 401 ERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELK-----------FVIKELQQLEGS 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 771 TQRYAEKKLEAERLLAENDKLTKNVSrleavfvaPEKHEKELMGLKSNIAELKMQLCELNkkcgegqEKIRALMSENTSL 850
Cdd:TIGR00606 470 SDRILELDQELRKAERELSKAEKNSL--------TETLKKEVKSLQNEKADLDRKLRKLD-------QEMEQLNHHTTTR 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 851 KKTLSSQYVPAKTHEEVKASLSSTLEKTNRALLD--SKKRLDDTsqeFSKLREENEVLRRNLENVQNQMKadyvSLEEHS 928
Cdd:TIGR00606 535 TQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYfpNKKQLEDW---LHSKSKEINQTRDRLAKLNKELA----SLEQNK 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 929 RKMNMANQSLKEAQDAHTALLADYRQGQEEIV---TLHAEIKAQKKELDTIQECIKLKYAPLSRMEE--------CERKF 997
Cdd:TIGR00606 608 NHINNELESKEEQLSSYEDKLFDVCGSQDEESdleRLKEEIEKSSKQRAMLAGATAVYSQFITQLTDenqsccpvCQRVF 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 998 KaTEKALKEQLSEQTHKGQV-------RDEEVKKGKQENERLRKDLAALQKELKDRNVLVEEAREAERALSRKTEELGKQ 1070
Cdd:TIGR00606 688 Q-TEAELQEFISDLQSKLRLapdklksTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKND 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1071 LKELSQKYSDVKSErEKLVEEKAKQTSEILAAQNLLQKQPVPLEQVEALKTSLNG--TIEHLKEELRSKERCLEREQQAV 1148
Cdd:TIGR00606 767 IEEQETLLGTIMPE-EESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLdrTVQQVNQEKQEKQHELDTVVSKI 845
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1149 SQLQQLLENQKSSSVTLADHLQLKEALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTK-------QALKNLETRE 1221
Cdd:TIGR00606 846 ELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKeqdspleTFLEKDQQEK 925
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1222 VVDMSKYKATK-------NDLETQISNLNDKLASLNRKYDQVCEEKVSAKdEKELLHLNIE-QEIRDQKERCDKSLTTIM 1293
Cdd:TIGR00606 926 EELISSKETSNkkaqdkvNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQK-ETELNTVNAQlEECEKHQEKINEDMRLMR 1004
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 564364065 1294 EL--QQRIQESAKQIEAKDNKITELLNDVER-LKQALNGLSQL 1333
Cdd:TIGR00606 1005 QDidTQKIQERWLQDNLTLRKRENELKEVEEeLKQHLKEMGQM 1047
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
762-1325 |
5.15e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.82 E-value: 5.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 762 DLNKKLSDATQRYAEKKLEAERLLAENDKLTKNVSRLEAVFVAPEKHEKELMGLKSNIAELkmqlcelnkkcgegQEKIR 841
Cdd:PRK02224 203 DLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDL--------------RETIA 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 842 ALMSENTSLKKTLSSQyvpAKTHEEVKASLSSTLEKTNRALLDSkkrlDDTSQEFSKLREENEVLRRNLENVQnqmkady 921
Cdd:PRK02224 269 ETEREREELAEEVRDL---RERLEELEEERDDLLAEAGLDDADA----EAVEARREELEDRDEELRDRLEECR------- 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 922 VSLEEHSRKMnmanQSLKEAQDAHTALLADYRqgqEEIVTLHAEIKAQKKELDTIQEciklkyaplsRMEECERKFKATE 1001
Cdd:PRK02224 335 VAAQAHNEEA----ESLREDADDLEERAEELR---EEAAELESELEEAREAVEDRRE----------EIEELEEEIEELR 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1002 KALkEQLSEQTHKGQVRDEEVkkgKQENERLRKDLAALQKELKDRNVLVEEAREAERAlsRKTEELGKQLKElsqkysdv 1081
Cdd:PRK02224 398 ERF-GDAPVDLGNAEDFLEEL---REERDELREREAELEATLRTARERVEEAEALLEA--GKCPECGQPVEG-------- 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1082 kSEREKLVEEKAKQTSEILAAqnllqkqpvpLEQVEALKTSLNGTIEHLkEELRSKERCLEREQQAVSQLQQLLENQKSS 1161
Cdd:PRK02224 464 -SPHVETIEEDRERVEELEAE----------LEDLEEEVEEVEERLERA-EDLVEAEDRIERLEERREDLEELIAERRET 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1162 ----SVTLADHLQLKEALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLETREVVDmskykATKNDLET 1237
Cdd:PRK02224 532 ieekRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLL-----AAIADAED 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1238 QISNLNDKLASLNRKYDQVCEEKVSAKDEKELLHLNIE----QEIRDQKERCDKSLTTIMELQQRIQES----AKQIEAK 1309
Cdd:PRK02224 607 EIERLREKREALAELNDERRERLAEKRERKRELEAEFDeariEEAREDKERAEEYLEQVEEKLDELREErddlQAEIGAV 686
|
570
....*....|....*.
gi 564364065 1310 DNKITELLNDVERLKQ 1325
Cdd:PRK02224 687 ENELEELEELRERREA 702
|
|
| PHA02878 |
PHA02878 |
ankyrin repeat protein; Provisional |
70-224 |
5.50e-09 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 222939 [Multi-domain] Cd Length: 477 Bit Score: 60.28 E-value: 5.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 70 GRSAFHVVAAKGNLECLNAILTHGIDVATRDSAGRNALHLAAKYGHALCLQKLLQYNCPTEHVDLQGRTALHdAAMADCP 149
Cdd:PHA02878 168 GNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLH-ISVGYCK 246
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564364065 150 SS--IQLLCDHGASVNAKD-IDGRTPLVLATQmcRPTICQLLIDRGADVNSRDKQNRTAL-MLGCEYGCRDAVEVLVRN 224
Cdd:PHA02878 247 DYdiLKLLLEHGVDVNAKSyILGLTALHSSIK--SERKLKLLLEYGADINSLNSYKLTPLsSAVKQYLCINIGRILISN 323
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1054-1364 |
5.69e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 5.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1054 REAERALsRKTEELGKQLKELSQKYSDVKSEREKLVEEKAK--------------QTSEILAAQNLLQKQpvpLEQVEAL 1119
Cdd:TIGR02169 170 RKKEKAL-EELEEVEENIERLDLIIDEKRQQLERLRREREKaeryqallkekreyEGYELLKEKEALERQ---KEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1120 KTSLNGTIEHLKEELRSKERCLEREQQAVSQLqqlleNQKSSSVTLADHLQLKEALEK---EVGIMKASLREKEEESQKK 1196
Cdd:TIGR02169 246 LASLEEELEKLTEEISELEKRLEEIEQLLEEL-----NKKIKDLGEEEQLRVKEKIGEleaEIASLERSIAEKERELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1197 TKEVSKLQTEVQNTKQALKNLETrevvDMSKYKATKNDLETQISNLNDKLASLNRKYDQVCEEKVSAKDEkellHLNIEQ 1276
Cdd:TIGR02169 321 EERLAKLEAEIDKLLAEIEELER----EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE----LKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1277 EIRDQKERCDKSLTTIMELQQRIQESAKQIEAKDNKITELLNDVERLKQALNGLSQLTYSSGGPTKRQSQLVDTLQQRVR 1356
Cdd:TIGR02169 393 KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY 472
|
....*...
gi 564364065 1357 DLQQQLAD 1364
Cdd:TIGR02169 473 DLKEEYDR 480
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
897-1221 |
7.74e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 7.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 897 SKLREENEVLRRNLENVQNQMKADYVSLEEHSRKMNMANQSLKEAQDAHtALLADYRQGQEEIVTLhaEIKAQKKELDTI 976
Cdd:TIGR02168 168 SKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYK-ELKAELRELELALLVL--RLEELREELEEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 977 QECIKlkyaplsRMEECERKFKATEKALKEQLSEQTHKGQVRDEEVKKGKQENERLRKDLAALQKELKDRNVLVEEAREA 1056
Cdd:TIGR02168 245 QEELK-------EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQ 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1057 ERALSRKTEELGKQLKELSQKYSDVKSE----REKLVEEKAKQTSEILAAQNLLQKQPVPLEQVEALK----------TS 1122
Cdd:TIGR02168 318 LEELEAQLEELESKLDELAEELAELEEKleelKEELESLEAELEELEAELEELESRLEELEEQLETLRskvaqlelqiAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1123 LNGTIEHLKEELRSKERCLEREQQAVSQLQQLLENQ--KSSSVTLADHLQLKEALEKEVGIMKASLREKEEESQKKTKEV 1200
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAelKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL 477
|
330 340
....*....|....*....|.
gi 564364065 1201 SKLQTEVQNTKQALKNLETRE 1221
Cdd:TIGR02168 478 DAAERELAQLQARLDSLERLQ 498
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
445-801 |
8.71e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 8.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 445 KKELEAMRTFCDSAKQDRLKLQNELAHKVAECKALALECERVKEDSDEQIKQLEDALKDVQKRMYESEgKVKQMQTHFLA 524
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE-QLEERIAQLSK 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 525 LKEHLTNEaATGSHRVIEELREQLKDMKGKYEGASAEVGKLRNQIKQSEMLVEGFKRDESRLVEENKRLQKECSTCEIDR 604
Cdd:TIGR02168 755 ELTELEAE-IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 605 ERRGRRVTELEGQLKELgaklalsvpTETFESMKSSLSN---DISEKAKRLAEVGRDYESSQGEIRQLKRDLESVRAQHi 681
Cdd:TIGR02168 834 AATERRLEDLEEQIEEL---------SEDIESLAAEIEEleeLIEELESELEALLNERASLEEALALLRSELEELSEEL- 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 682 rpEEHEQLRSRLEQKSGELGKKVTELTLKNQTLQKEVEKLYAdnKLLNQqvHSLTVEMKTRYVPLRVSEEMKKAHDvnVE 761
Cdd:TIGR02168 904 --RELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE--RLSEE--YSLTLEEAEALENKIEDDEEEARRR--LK 975
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 564364065 762 DLNKKLS-------DATQRYAEKKLEAERLLAENDKLTKNVSRLEAV 801
Cdd:TIGR02168 976 RLENKIKelgpvnlAAIEEYEELKERYDFLTAQKEDLTEAKETLEEA 1022
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1044-1359 |
9.01e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 9.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1044 KDRNVLVEEA----------REAERALSRKTE----------ELGKQLK------ELSQKYSDVKSEREKLveEKAKQTS 1097
Cdd:TIGR02168 155 EERRAIFEEAagiskykerrKETERKLERTREnldrledilnELERQLKslerqaEKAERYKELKAELREL--ELALLVL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1098 EILAAQNLLQKQPVPLEQVEALKTSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLLENQKSSSVTLADHLQ-LKEALE 1176
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQiLRERLA 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1177 ------KEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLETREVVDMSKYKATKNDLETQISNLNDKLASLN 1250
Cdd:TIGR02168 313 nlerqlEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1251 RKYDQVCEEKVSAKDEKELLHLNIEQEIRDQKERCDKSLTTIM-ELQQRIQESAKQIEAKDNKITELLNDVERLKQALNG 1329
Cdd:TIGR02168 393 LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELkELQAELEELEEELEELQEELERLEEALEELREELEE 472
|
330 340 350
....*....|....*....|....*....|
gi 564364065 1330 LSQLTYSSGGPTKRQSQLVDTLQQRVRDLQ 1359
Cdd:TIGR02168 473 AEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| PTZ00322 |
PTZ00322 |
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional |
152-249 |
1.46e-08 |
|
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Pssm-ID: 140343 [Multi-domain] Cd Length: 664 Bit Score: 59.14 E-value: 1.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 152 IQLLCDHGASVNAKDIDGRTPLVLATQMCRPTICQLLIDRGADVNSRDKQNRTALMLGCEYGCRDAVEVLVRNGADLTLL 231
Cdd:PTZ00322 98 ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFEL 177
|
90
....*....|....*...
gi 564364065 232 DALGHDSSYYARIGDNLD 249
Cdd:PTZ00322 178 GANAKPDSFTGKPPSLED 195
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
540-1218 |
1.55e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 1.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 540 VIEELREQLkdmkgkyegasaevgklrnqikqsemlvegfkrdesrlveenKRLQKECstceidreRRGRRVTELEGQLK 619
Cdd:COG1196 194 ILGELERQL------------------------------------------EPLERQA--------EKAERYRELKEELK 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 620 ELGAKLALsvptetfesmksslsndisekaKRLAEVGRDYESSQGEIRQLKRDLESVRAQHirpEEHEQLRSRLEQKSGE 699
Cdd:COG1196 224 ELEAELLL----------------------LKLRELEAELEELEAELEELEAELEELEAEL---AELEAELEELRLELEE 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 700 LGKKVTELTLKNQTLQKEVEKLYADNKLLNQQVHSLTVEMKTRYVPLRVSEEMKKAHDVNVEDLNKKLSDATQRYAEKKL 779
Cdd:COG1196 279 LELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEA 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 780 EAERLLAENDKLTKNVSRLEAVFvapEKHEKELMGLKSNIAELKMQLCELNKKCGEGQEKIRALMSENTSLKKTLSSQYV 859
Cdd:COG1196 359 ELAEAEEALLEAEAELAEAEEEL---EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 860 PAKTHEEVKASLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNL------ENVQNQMKADYVSLEEHSRKMNM 933
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELaeaaarLLLLLEAEADYEGFLEGVKAALL 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 934 ANQSLKEAQDAHTALLADYRQGQEEIVTLHAEIKAQKKELDTI-QECIK-LKYAPLSRMEecerkFKATEKALKEQLSEQ 1011
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVaAAAIEyLKAAKAGRAT-----FLPLDKIRARAALAA 590
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1012 THKGQVRDEEVKKGKQENERLRKDLAALQKELKDRNVLVEEAREAERALSRKTEELGKQLKELsqkysDVKSEREKLVEE 1091
Cdd:COG1196 591 ALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEG-----EGGSAGGSLTGG 665
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1092 KAKQTSEILAAQNLLQKqpvplEQVEALKTSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLLENQKSSSVTLADHLQL 1171
Cdd:COG1196 666 SRRELLAALLEAEAELE-----ELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEE 740
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 564364065 1172 KEALEKEvgimkasLREKEEESQKKTKEVSKLQTEVQNTKQALKNLE 1218
Cdd:COG1196 741 LLEEEEL-------LEEEALEELPEPPDLEELERELERLEREIEALG 780
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
335-904 |
1.86e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.38 E-value: 1.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 335 EEVMVADDLESEREKLKSLLAAKEKQHEESLRTIEALKNRFKyfesdhpgpgsyssnRKEDMLHKQGQMYTADSQCTSPG 414
Cdd:PTZ00121 1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAE---------------AAADEAEAAEEKAEAAEKKKEEA 1376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 415 VPPHMQSRSmlRPLELSLPSQTSYSENEILKKELEAMRTFCDSAKQDRLKLQNELAHKVAECKALALECERVKE--DSDE 492
Cdd:PTZ00121 1377 KKKADAAKK--KAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEakKKAE 1454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 493 QIKQLEDALKDVQKRMYESEGKVKQMQthflALKEHLTNEAATGSHRVIEELREQLKDMKGKYEGASAEVGKLRNQIKQS 572
Cdd:PTZ00121 1455 EAKKAEEAKKKAEEAKKADEAKKKAEE----AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA 1530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 573 EmlvEGFKRDESRLVEENKRLQKECSTCEIDRERRGRRVTElegqlkelgaklalsvptetfesmKSSLSNDISEKAKRL 652
Cdd:PTZ00121 1531 E---EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEE------------------------AKKAEEDKNMALRKA 1583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 653 AEVGRDYESSQGEIRQLKRDLESVRAQHIRPEEHEQLRSRLEQKSGELGKKVTELTLKNQTLQK---EVEKLYADNKLLN 729
Cdd:PTZ00121 1584 EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKkaeELKKAEEENKIKA 1663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 730 QQVHSLTVEMKtryvplRVSEEMKKAhdvnvEDLNKKLSDATQRYAEKKLEAERLlaeNDKLTKNVSRLEAVFVAPEKHE 809
Cdd:PTZ00121 1664 AEEAKKAEEDK------KKAEEAKKA-----EEDEKKAAEALKKEAEEAKKAEEL---KKKEAEEKKKAEELKKAEEENK 1729
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 810 KELMGLKSNIAELKMQLCELNKKcgEGQEKIRALMSENTSLKKTLSSQYVPAKTHEEVKaslsstlEKTNRALLDSKKRL 889
Cdd:PTZ00121 1730 IKAEEAKKEAEEDKKKAEEAKKD--EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELD-------EEDEKRRMEVDKKI 1800
|
570
....*....|....*
gi 564364065 890 DDTSQEFSKLREENE 904
Cdd:PTZ00121 1801 KDIFDNFANIIEGGK 1815
|
|
| trp |
TIGR00870 |
transient-receptor-potential calcium channel protein; The Transient Receptor Potential Ca2+ ... |
24-236 |
2.84e-08 |
|
transient-receptor-potential calcium channel protein; The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999). [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273311 [Multi-domain] Cd Length: 743 Bit Score: 58.55 E-value: 2.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 24 AVTSSLSAEWNKYddrlMKAAERGDVEKVSsilaKKGVHPGKLDVE-----GRSAFHVVAAKGNLECLNAIL-THGIDVA 97
Cdd:TIGR00870 9 AEESPLSDEEKAF----LPAAERGDLASVY----RDLEEPKKLNINcpdrlGRSALFVAAIENENLELTELLlNLSCRGA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 98 TrdsaGRNALHLAAKYGHA---LCLQKLLQ---YNCPTEHVDLQ-------GRTALHDAAMADCPSSIQLLCDHGASVNA 164
Cdd:TIGR00870 81 V----GDTLLHAISLEYVDaveAILLHLLAafrKSGPLELANDQytseftpGITALHLAAHRQNYEIVKLLLERGASVPA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 165 K----------DID----GRTPLVLATQMCRPTICQLLIDRGADVNSRDKQNRTALML-------GCEY----------- 212
Cdd:TIGR00870 157 RacgdffvksqGVDsfyhGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLlvmenefKAEYeelscqmynfa 236
|
250 260 270
....*....|....*....|....*....|
gi 564364065 213 -----GCRDAVEV-LVRNGADLTLLDALGH 236
Cdd:TIGR00870 237 lslldKLRDSKELeVILNHQGLTPLKLAAK 266
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
532-1268 |
3.06e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 58.58 E-value: 3.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 532 EAATGSHRVIEELREQLKDMKGKYEGASAEVGKLRNQIKQSEMLVEGFKRDESRLVEENKRLQ---KECSTCEIDRERRG 608
Cdd:pfam05483 71 ENSEGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSlklEEEIQENKDLIKEN 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 609 RRVTELEGQLKELGAKLALSVPTETFESMKS-----SLSNDISEKAKRLAEVGRDYESSQGEIR-QLKRDLESVraQHIR 682
Cdd:pfam05483 151 NATRHLCNLLKETCARSAEKTKKYEYEREETrqvymDLNNNIEKMILAFEELRVQAENARLEMHfKLKEDHEKI--QHLE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 683 PEEHEQLRSRLEQ------KSGELGKKVTELTLKNQTLQKEVEKLYADNKL-------LNQQVHSLTVEMKTRYVPLRVS 749
Cdd:pfam05483 229 EEYKKEINDKEKQvsllliQITEKENKMKDLTFLLEESRDKANQLEEKTKLqdenlkeLIEKKDHLTKELEDIKMSLQRS 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 750 EEMKKAHDvnvEDLNKKLSDATQRYAEKKLEAERLLAENDKLTKNVSRLEAVFVAPEKHEK-ELMGLKSNIAELKMQLCE 828
Cdd:pfam05483 309 MSTQKALE---EDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRtEQQRLEKNEDQLKIITME 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 829 LNKKCGEGQEKIRALMS---ENTSLKKTLSSQYV---PAKTHEEVKASLSSTLEKTNRALLDSKKRLDDTSQEFSKLREE 902
Cdd:pfam05483 386 LQKKSSELEEMTKFKNNkevELEELKKILAEDEKlldEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTS 465
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 903 NEVLRRNLENVQNQMKADYVSLEEHSRKMNMANQSLKEAQDAHTALLADYRQGQEEIVTLHAEIKAQKKELDTIQECikl 982
Cdd:pfam05483 466 EEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEK--- 542
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 983 KYAPLSRMEECERKFKATEKALKEQLSEQTHKGQVRDEEVKKGKQENERLRKDLAALQKELKDRNVLVEEAREAERALSR 1062
Cdd:pfam05483 543 EMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKK 622
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1063 KTEELGKQLKELsqkysDVKSEREKLVEEKAKQTSEILAaqNLLQKQpvpLEQVEALKTSLNGTIEHLK----EELRSKE 1138
Cdd:pfam05483 623 KGSAENKQLNAY-----EIKVNKLELELASAKQKFEEII--DNYQKE---IEDKKISEEKLLEEVEKAKaiadEAVKLQK 692
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1139 RCLEREQQAVSQLQQLLENQKSSsvtladHLQLKEALEKEVGIMKAslREKEEESQKKTkevsklqtevqntkqalknle 1218
Cdd:pfam05483 693 EIDKRCQHKIAEMVALMEKHKHQ------YDKIIEERDSELGLYKN--KEQEQSSAKAA--------------------- 743
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 564364065 1219 trevvdmskykatkndLETQISNLNDKLASLNRKYDQVCEEKVSAKDEKE 1268
Cdd:pfam05483 744 ----------------LEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAK 777
|
|
| Ank_4 |
pfam13637 |
Ankyrin repeats (many copies); |
70-123 |
3.28e-08 |
|
Ankyrin repeats (many copies);
Pssm-ID: 372654 [Multi-domain] Cd Length: 54 Bit Score: 51.12 E-value: 3.28e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 564364065 70 GRSAFHVVAAKGNLECLNAILTHGIDVATRDSAGRNALHLAAKYGHALCLQKLL 123
Cdd:pfam13637 1 ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL 54
|
|
| Ank_4 |
pfam13637 |
Ankyrin repeats (many copies); |
136-189 |
4.15e-08 |
|
Ankyrin repeats (many copies);
Pssm-ID: 372654 [Multi-domain] Cd Length: 54 Bit Score: 50.74 E-value: 4.15e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 564364065 136 GRTALHDAAMADCPSSIQLLCDHGASVNAKDIDGRTPLVLATQMCRPTICQLLI 189
Cdd:pfam13637 1 ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL 54
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1027-1263 |
4.32e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.08 E-value: 4.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1027 QENERLRKDLAALQKELKDRNVLVEEAREAERALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEILAAQNLL 1106
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1107 QKQPVPLEQV--EALKTSLNGTIEHL--KEELRSKERCLEREQQAVSQLQQLLENQKSSSVTLAdhlQLKEALEKEVGIM 1182
Cdd:COG4942 100 EAQKEELAELlrALYRLGRQPPLALLlsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA---ALRAELEAERAEL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1183 KASLREKEEESQkktkevsKLQTEVQNTKQALKNLETREvvdmSKYKATKNDLETQISNLNDKLASLNRKYDQVCEEKVS 1262
Cdd:COG4942 177 EALLAELEEERA-------ALEALKAERQKLLARLEKEL----AELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
.
gi 564364065 1263 A 1263
Cdd:COG4942 246 A 246
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1020-1221 |
5.10e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.70 E-value: 5.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1020 EEVKKGKQENERLRKDLAALQKELKDRNVLVEEAREAERALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEI 1099
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1100 LAAQNLLQKQPV---PLEQVEALKTSLNGT-----------IEHLKEELRSKERCLEREQQAVSQLQQLLENQKSS-SVT 1164
Cdd:COG4942 100 EAQKEELAELLRalyRLGRQPPLALLLSPEdfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAElEAL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564364065 1165 LADHLQLKEALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLETRE 1221
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
936-1398 |
6.97e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.08 E-value: 6.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 936 QSLKEAQDAHTALLADYRQGQEEIVTLHAEIKAQKKELDTIQECIKLkYAPLSRMEECERKFKATEKALkEQLSEQTHKG 1015
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL-LPLYQELEALEAELAELPERL-EELEERLEEL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1016 QVRDEEVKKGKQENERLRKDLAALQKELKDRNVL-VEEAREAERALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAK 1094
Cdd:COG4717 159 RELEEELEELEAELAELQEELEELLEQLSLATEEeLQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEA 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1095 Q---------------TSEILAAQNLLQKQPVPLEQVEALKTSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLLENQK 1159
Cdd:COG4717 239 AaleerlkearlllliAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEE 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1160 SSSVTLADHLQLKEALEKEvgiMKASLREKEEESQKKTKEVSKLQTEVQntkqaLKNLETREVVDMSKYKAtkndletqi 1239
Cdd:COG4717 319 EELEELLAALGLPPDLSPE---ELLELLDRIEELQELLREAEELEEELQ-----LEELEQEIAALLAEAGV--------- 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1240 snlnDKLASLNRKYDQVcEEKVSAKDEKELLHLNIEQEIRDQKERCDKSLTTimELQQRIQESAKQIEAKDNKITELLND 1319
Cdd:COG4717 382 ----EDEEELRAALEQA-EEYQELKEELEELEEQLEELLGELEELLEALDEE--ELEEELEELEEELEELEEELEELREE 454
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564364065 1320 VERLKQALNGLsqltyssggptkRQSQLVDTLQQRVRDLQQQLADADRQHQEVIAIYrtHLLSAAQGHMDEDVQAALLQ 1398
Cdd:COG4717 455 LAELEAELEQL------------EEDGELAELLQELEELKAELRELAEEWAALKLAL--ELLEEAREEYREERLPPVLE 519
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
447-1074 |
1.26e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 56.72 E-value: 1.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 447 ELEAMRTFCDSAKQDRLKLQNELAHKVAE----CKALALECERVKE---DSDEQIKQLEDALKDVQKRMYESEGKVKQMQ 519
Cdd:pfam01576 58 EAEEMRARLAARKQELEEILHELESRLEEeeerSQQLQNEKKKMQQhiqDLEEQLDEEEAARQKLQLEKVTTEAKIKKLE 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 520 THFLALKEHltNEAATGSHRVIEELREQLKDMKGKYEGASAEVGKLRNqiKQSEMLVEgfkrDESRLVEENKRLQKecst 599
Cdd:pfam01576 138 EDILLLEDQ--NSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKN--KHEAMISD----LEERLKKEEKGRQE---- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 600 CEIDRERRGRRVTELEGQLKELGAKLA-LSVPTETFESMKSSLSNDISEKAKRLAEVGRDYESSQGEIRQLKRDLESVRA 678
Cdd:pfam01576 206 LEKAKRKLEGESTDLQEQIAELQAQIAeLRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERA 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 679 QHIRPEEH-------------------------EQLRSRLEQKSGELGKKVTELTLKNQT---------------LQKEV 718
Cdd:pfam01576 286 ARNKAEKQrrdlgeelealkteledtldttaaqQELRSKREQEVTELKKALEEETRSHEAqlqemrqkhtqaleeLTEQL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 719 EKLYADNKLLNQQVHSLTVEMKTRYVPLRV-------SEEMKKAHDVNVEDLNKKLSDATQRYAEKKLEAERLLAENDKL 791
Cdd:pfam01576 366 EQAKRNKANLEKAKQALESENAELQAELRTlqqakqdSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESV 445
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 792 TKNVSRLEAVFVapeKHEKELMGLKSNIAELKMQLCELNKKCGEGQEKIRALMSENTSLKKTLSSQyvpakthEEVKASL 871
Cdd:pfam01576 446 SSLLNEAEGKNI---KLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEE-------EEAKRNV 515
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 872 SSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLENVQNQMK---ADYVSLEEHSRKMNMANQSLKEAQDAHTAL 948
Cdd:pfam01576 516 ERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEekaAAYDKLEKTKNRLQQELDDLLVDLDHQRQL 595
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 949 LADYRQGQEEIVTLHAEIKAqkkeldtiqecIKLKYAPLSRMEECERKFKATeKALkeQLSEQTHKGQVRDEEVKKgkqE 1028
Cdd:pfam01576 596 VSNLEKKQKKFDQMLAEEKA-----------ISARYAEERDRAEAEAREKET-RAL--SLARALEEALEAKEELER---T 658
|
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 564364065 1029 NERLRKDLAALQKELKDRNVLVEEAREAERALSRKTEELGKQLKEL 1074
Cdd:pfam01576 659 NKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEEL 704
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
442-721 |
2.20e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 2.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 442 EILKKELEAMRTFCDSAKQDRLKLQNE---LAHKVAECKALALECERVKEDSDEQIKQLEDALKDVQKRMYESEGKVKQM 518
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEieeLEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL 815
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 519 QTHFLALKEHLTNEAATGS--HRVIEELREQLKDMKGKYEGASAEVGKLRNQIKQSEMLVEGFKRDESRLVEENKRLQKE 596
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAatERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 597 CSTCEIDRERRGRRVTELEGQLKELGAKLAlsvpteTFESMKSSLSNDISEKAKRLAEVGRD--------YESSQGEIRQ 668
Cdd:TIGR02168 896 LEELSEELRELESKRSELRRELEELREKLA------QLELRLEGLEVRIDNLQERLSEEYSLtleeaealENKIEDDEEE 969
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564364065 669 LKRDLESVRAQHIR--------PEEHEQLRSRLEqksgELGKKVTELTLKNQTLQKEVEKL 721
Cdd:TIGR02168 970 ARRRLKRLENKIKElgpvnlaaIEEYEELKERYD----FLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
957-1371 |
4.84e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.26 E-value: 4.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 957 EEIVTLHAEIKAQKKELDTIQECIKLKYAPLSRMEECERKFKATEKALKEQLSEQTHK-------GQVRDEEVKKGKQEN 1029
Cdd:TIGR04523 40 KKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKinklnsdLSKINSEIKNDKEQK 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1030 ERLRKDLAALQKELKDRNVLVEEAREAERALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEILAAQNLLQKQ 1109
Cdd:TIGR04523 120 NKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKL 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1110 PVPLEQVEALK---TSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLLENQKSssvtladhlQLKEALEKEVGImKASL 1186
Cdd:TIGR04523 200 ELLLSNLKKKIqknKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQT---------QLNQLKDEQNKI-KKQL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1187 REKEEESQKKTKEVSKLQTEVQNTKQALKNLETREVVDMSKY--------KATKNDLETQISNLNDKLASLNRKYDQVce 1258
Cdd:TIGR04523 270 SEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKElkselknqEKKLEEIQNQISQNNKIISQLNEQISQL-- 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1259 ekvsakdEKELLHLNIEQEirdqkercdkslttimELQQRIQESAKQIEAKDNKITELLNDVERLKQALNGLSQltyssg 1338
Cdd:TIGR04523 348 -------KKELTNSESENS----------------EKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLES------ 398
|
410 420 430
....*....|....*....|....*....|...
gi 564364065 1339 gPTKRQSQLVDTLQQRVRDLQQQLADADRQHQE 1371
Cdd:TIGR04523 399 -KIQNQEKLNQQKDEQIKKLQQEKELLEKEIER 430
|
|
| PHA02875 |
PHA02875 |
ankyrin repeat protein; Provisional |
83-254 |
4.91e-07 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 165206 [Multi-domain] Cd Length: 413 Bit Score: 53.84 E-value: 4.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 83 LECLNAILTHGIDVATR--DSA---------GRNALHLAAKYGHALCLQKLLQYNCPTEHVDLQGRTALHDAAMADCPSS 151
Cdd:PHA02875 4 VALCDAILFGELDIARRllDIGinpnfeiydGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 152 IQLLCDHGASVNakDI---DGRTPLVLATQMCRPTICQLLIDRGADVNSRDKQNRTALMLGCEYGCRDAVEVLVRNGADL 228
Cdd:PHA02875 84 VEELLDLGKFAD--DVfykDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL 161
|
170 180
....*....|....*....|....*.
gi 564364065 229 TLLDALGHDSSYYARIGDNLDILNLL 254
Cdd:PHA02875 162 DIEDCCGCTPLIIAMAKGDIAICKML 187
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
643-1225 |
5.21e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 5.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 643 NDISEKAKRLAEVGRDYESSQGEIRQLKRDLESVRaqhirpEEHEQLRSRLEqksgELGKKVTELTLKNQTLQKEVEKLY 722
Cdd:PRK02224 209 NGLESELAELDEEIERYEEQREQARETRDEADEVL------EEHEERREELE----TLEAEIEDLRETIAETEREREELA 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 723 ADNKLLNQQVHSLTVEMKTRYVPLRVSEEMKKAHDVNVEDLNKKLSDATQRYAEKKLEAERLLAENDKLTKNVSRLEAvf 802
Cdd:PRK02224 279 EEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEE-- 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 803 VAPEKHEKElmglksniAELKMQLCELNKKCGEGQEKIRALMSENTSLKKtlssqyvpaktheevkaslssTLEKTNRAL 882
Cdd:PRK02224 357 RAEELREEA--------AELESELEEAREAVEDRREEIEELEEEIEELRE---------------------RFGDAPVDL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 883 LDSKKRLDDTSQEFSKLREENEVLRRNLENVQNQMKADYVSLEEHsrKMNMANQSLKEAQDAHTalLADYRQGQEEIVTL 962
Cdd:PRK02224 408 GNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAG--KCPECGQPVEGSPHVET--IEEDRERVEELEAE 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 963 HAEIKAQKKELDTIQECIKLKYAPLSRMEECERKFKATEKALKEqlseqthkgqvRDEEVKKGKQENERLRKDLAALQKE 1042
Cdd:PRK02224 484 LEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAE-----------RRETIEEKRERAEELRERAAELEAE 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1043 lkdrnvlVEEAREAERALSRKTEELGKQLKELSQKYSDVKSEREKLveekaKQTSEILAAQNLLQKQPVPL-EQVEALKT 1121
Cdd:PRK02224 553 -------AEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL-----ERIRTLLAAIADAEDEIERLrEKREALAE 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1122 SLNGTIEHLKeELRSKERCLERE--QQAVSQLQQLLENQKSSSVTLADHLQLKEA----LEKEVGIMKASLREKEEESQK 1195
Cdd:PRK02224 621 LNDERRERLA-EKRERKRELEAEfdEARIEEAREDKERAEEYLEQVEEKLDELREerddLQAEIGAVENELEELEELRER 699
|
570 580 590
....*....|....*....|....*....|..
gi 564364065 1196 KtkevsklqTEVQNTKQALKNL--ETREVVDM 1225
Cdd:PRK02224 700 R--------EALENRVEALEALydEAEELESM 723
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
665-1325 |
8.02e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.82 E-value: 8.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 665 EIRQLKRDLESVRAQHIRPEEHEQLRSRLEQKSGELGKKVTELTLKNQtlqkevEKLYADNKLLNQQVHSLTVEMKTRYV 744
Cdd:pfam02463 184 NLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDY------LKLNEERIDLLQELLRDEQEEIESSK 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 745 PLRVSEEMKKAHDVNVEDLNK---KLSDATQRYAEKKLEAERLLAENDKLTKNVSRLEAVFV--APEKHEKELMGLKSNI 819
Cdd:pfam02463 258 QEIEKEEEKLAQVLKENKEEEkekKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESekEKKKAEKELKKEKEEI 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 820 AELKMQLCELNKKCGEGQEKIRALMSENTSLKKTLSSQYVPAKTHEEVKASLSSTLEKTNRALLDSKKRLDDTSQEFSKL 899
Cdd:pfam02463 338 EELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 900 REENEVLRRNLENVQNQMKADYVSLEEHSRKmnmanqsLKEAQDAHTALLADYRQGQEEIVTLHAEIKAQKKELDTIQEC 979
Cdd:pfam02463 418 EDLLKEEKKEELEILEEEEESIELKQGKLTE-------EKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLL 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 980 IKLKYAPLSRMEECERKFKATEKALkeqlseqthkgqVRDEEVKKGKQENERLRKDLAALQKELKDRNVLVEEAREAERA 1059
Cdd:pfam02463 491 SRQKLEERSQKESKARSGLKVLLAL------------IKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATAD 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1060 LSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAK-QTSEILAAQNLLQKQPVPLEQVEALKT-SLNGTIEHLKEELRSK 1137
Cdd:pfam02463 559 EVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSiAVLEIDPILNLAQLDKATLEADEDDKRaKVVEGILKDTELTKLK 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1138 ERCLEREQQAVSQLQQLLENQKSSSVTLADHLQLKEALEKEVGIMKAS-----LREKEEESQKKTKEVSKLQTEVQNTKQ 1212
Cdd:pfam02463 639 ESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAEselakEEILRRQLEIKKKEQREKEELKKLKLE 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1213 ALKNLETREVVDMSKYKATKNDLETQISNLNDKLASLNRKYDQVCEEKVSAKDEKELLHLNIEQEIRDQKERCDKSLTTI 1292
Cdd:pfam02463 719 AEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKA 798
|
650 660 670
....*....|....*....|....*....|...
gi 564364065 1293 MELQQRIQESAKQIEAKDNKITELLNDVERLKQ 1325
Cdd:pfam02463 799 QEEELRALEEELKEEAELLEEEQLLIEQEEKIK 831
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
881-1102 |
8.64e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 8.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 881 ALLDSKKRLDDTSQEFSKLREENEVLRRNLENVQNQMKADYVSLEEHSRKMNMANQSLKEAQDAHTALLADYRQGQEEIV 960
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 961 TLHAEIKAQKKELDTI---------QECIKLKYAP-----LSRMEECERKFKATEKALKEQLSEQTHKGQVRDEEVKKGK 1026
Cdd:COG4942 94 ELRAELEAQKEELAELlralyrlgrQPPLALLLSPedfldAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564364065 1027 QENERLRKDLAALQKELKDrnvLVEEAREAERALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEILAA 1102
Cdd:COG4942 174 AELEALLAELEEERAALEA---LKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
964-1156 |
9.10e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 9.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 964 AEIKAQKKELDTIQECIKLKYAPLSRMEECERKFKATEKALKEQLSEQTHKGQVRDEEVKKGKQENERLRKDLAALQKEL 1043
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1044 KD-RNVLVEEAREAER-----------------ALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEILAAQNL 1105
Cdd:COG4942 100 EAqKEELAELLRALYRlgrqpplalllspedflDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564364065 1106 LQKQPVPLEQVEALKTSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLLE 1156
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
761-1323 |
1.05e-06 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 53.68 E-value: 1.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 761 EDLNKKLSDAtqRYAEKKLEAERLLAENDKLTKNVSRLEAVFVAP-EKHEKELMGLKSNIAELKMQLCELNKKCG----E 835
Cdd:PTZ00440 943 EKIEKQLSDT--KINNLKMQIEKTLEYYDKSKENINGNDGTHLEKlDKEKDEWEHFKSEIDKLNVNYNILNKKIDdlikK 1020
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 836 GQEKIRALM-SENTSLKKTLS---SQYVPAKthEEVKASLSStLEKTNrallDSKKRLDDTSQ-EFSKLREENEVLRRNL 910
Cdd:PTZ00440 1021 QHDDIIELIdKLIKEKGKEIEekvDQYISLL--EKMKTKLSS-FHFNI----DIKKYKNPKIKeEIKLLEEKVEALLKKI 1093
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 911 ENVQNQMKADYVSLEEHsrkMNMANQSLKEAQDAHTALLADYRQGQEEIVTLHAEIKAQKKELDTIQEC--IKLKYAPLS 988
Cdd:PTZ00440 1094 DENKNKLIEIKNKSHEH---VVNADKEKNKQTEHYNKKKKSLEKIYKQMEKTLKELENMNLEDITLNEVneIEIEYERIL 1170
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 989 RMEECErkfkatekalkeQLSEQTHKGQVRDEEVKKGKQENERLRKDLAALQKElKDRNVLVEEAREAERALSRKTEELG 1068
Cdd:PTZ00440 1171 IDHIVE------------QINNEAKKSKTIMEEIESYKKDIDQVKKNMSKERND-HLTTFEYNAYYDKATASYENIEELT 1237
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1069 KQLKEL------SQKYSDVKSEREKLVEEKAKQTSEILAAQNLLQKqpvpLEQVEALKTSLNGTiEHLKEELRSKERCLE 1142
Cdd:PTZ00440 1238 TEAKGLkgeanrSTNVDELKEIKLQVFSYLQQVIKENNKMENALHE----IKNMYEFLISIDSE-KILKEILNSTKKAEE 1312
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1143 REQQAVSQLQqllenqKSSSVTLADHLQLKEALEKEvgiMKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLetrev 1222
Cdd:PTZ00440 1313 FSNDAKKELE------KTDNLIKQVEAKIEQAKEHK---NKIYGSLEDKQIDDEIKKIEQIKEEISNKRKEINKY----- 1378
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1223 vdMSKYKATKNDLETQISNLN---DKLASLNRKydqvceEKVSAKDEKELlhlNIeQEIRDQKERCDKSLTTIMELQQRI 1299
Cdd:PTZ00440 1379 --LSNIKSNKEKCDLHVRNASrgkDKIDFLNKH------EAIEPSNSKEV---NI-IKITDNINKCKQYSNEAMETENKA 1446
|
570 580
....*....|....*....|....
gi 564364065 1300 QESAKQIEAKDNKITELLNDVERL 1323
Cdd:PTZ00440 1447 DENNDSIIKYEKEITNILNNSSIL 1470
|
|
| TRPV5-6 |
cd22192 |
Transient Receptor Potential channel, Vanilloid subfamily (TRPV), types 5 and 6; TRPV5 and ... |
78-206 |
1.21e-06 |
|
Transient Receptor Potential channel, Vanilloid subfamily (TRPV), types 5 and 6; TRPV5 and TRPV6 (TRPV5/6) are two homologous members within the vanilloid subfamily of the transient receptor potential (TRP) family. TRPV5 and TRPV6 show only 30-40% homology with other members of the TRP family and have unique properties that differentiates them from other TRP channels. They mediate calcium uptake in epithelia and their expression is dramatically increased in numerous types of cancer. The structure of TRPV5/6 shows the typical topology features of all TRP family members, such as six transmembrane regions, a short hydrophobic stretch between transmembrane segments 5 and 6, which is predicted to form the Ca2+ pore, and large intracellular N- and C-terminal domains. The N-terminal domain of TRPV5/6 contains three ankyrin repeats. This structural element is present in several proteins and plays a role in protein-protein interactions. The N- and C-terminal tails of TRPV5/6 each contain an internal PDZ motif which can function as part of a molecular scaffold via interaction with PDZ-domain containing proteins. A major difference between the properties of TRPV5 and TRPV6 is in their tissue distribution: TRPV5 is predominantly expressed in the distal convoluted tubules (DCT) and connecting tubules (CNT) of the kidney, with limited expression in extrarenal tissues. In contrast, TRPV6 has a broader expression pattern such as expression in the intestine, kidney, placenta, epididymis, exocrine tissues, and a few other tissues.
Pssm-ID: 411976 [Multi-domain] Cd Length: 609 Bit Score: 53.09 E-value: 1.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 78 AAKGNLECLNAILT-HGIDVATRDSAGRNALHLAAKYGHALCLQKLLqyNCPTEHVDL-------QGRTALHDAAMADCP 149
Cdd:cd22192 25 AKENDVQAIKKLLKcPSCDLFQRGALGETALHVAALYDNLEAAVVLM--EAAPELVNEpmtsdlyQGETALHIAVVNQNL 102
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564364065 150 SSIQLLCDHGASVNA---------KDID-----GRTPLVLATQMCRPTICQLLIDRGADVNSRDKQNRTAL 206
Cdd:cd22192 103 NLVRELIARGADVVSpratgtffrPGPKnliyyGEHPLSFAACVGNEEIVRLLIEHGADIRAQDSLGNTVL 173
|
|
| PHA02878 |
PHA02878 |
ankyrin repeat protein; Provisional |
152-254 |
1.94e-06 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 222939 [Multi-domain] Cd Length: 477 Bit Score: 52.19 E-value: 1.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 152 IQLLCDHGASVNAKDID-GRTPLVLATQMCRPTICQLLIDRGADVNSRDKQNRTALMLGCEYGCRDAVEVLVRNGADLTL 230
Cdd:PHA02878 150 TKLLLSYGADINMKDRHkGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDA 229
|
90 100
....*....|....*....|....*...
gi 564364065 231 LDALG----HDSSYYARigdNLDILNLL 254
Cdd:PHA02878 230 RDKCGntplHISVGYCK---DYDILKLL 254
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
870-1366 |
2.14e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 52.60 E-value: 2.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 870 SLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLEN---VQNQMKADYVSLEEHSRKMNMANQSLKEAQDAHT 946
Cdd:PRK01156 142 SLISGDPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEISNidyLEEKLKSSNLELENIKKQIADDEKSHSITLKEIE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 947 ALLADYRQGQEEIVTLHAEIKAQKKELDTI---QECIKLKYAPLSRMEECERKFKATEKALKEQLSEQTHKGQVRDEEVK 1023
Cdd:PRK01156 222 RLSIEYNNAMDDYNNLKSALNELSSLEDMKnryESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYF 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1024 KGKQENERLRKDLAALQKELKDRNVLVEEAREAERALS------RKTEELGKQLKELSQKYSD-------VKSEREKLVE 1090
Cdd:PRK01156 302 KYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNdyikkkSRYDDLNNQILELEGYEMDynsylksIESLKKKIEE 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1091 EKAKQTSEILAAQNLLQKQPVPLEQVEALKTSLNGTIEHLKEELRS---KERCLEREQQAVSQLQQLLENQKSSSV---T 1164
Cdd:PRK01156 382 YSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSlnqRIRALRENLDELSRNMEMLNGQSVCPVcgtT 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1165 LADhlqlkEALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLETREVVDMSKYKATKNDLETQISNLND 1244
Cdd:PRK01156 462 LGE-----EKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKI 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1245 KLASLNRKYDQVCEekvsAKDEKELLHLNIEQEIRDQ--KERCDKSLTTIMELQQRIQESAKQI---EAKDNKITELLND 1319
Cdd:PRK01156 537 KINELKDKHDKYEE----IKNRYKSLKLEDLDSKRTSwlNALAVISLIDIETNRSRSNEIKKQLndlESRLQEIEIGFPD 612
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 564364065 1320 VERLKQALNGLSQLTYSSGGPTKRQSQ----LVDTLQQRVRDLQQQLADAD 1366
Cdd:PRK01156 613 DKSYIDKSIREIENEANNLNNKYNEIQenkiLIEKLRGKIDNYKKQIAEID 663
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
684-1361 |
2.29e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.28 E-value: 2.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 684 EEHEQLRSRLEQKSGELGKKVTELTLKNQTLQKeveklyadnkLLNQQVHSLTVEMKTRYVPLRVSEEMKKAHDVNVEDL 763
Cdd:TIGR00618 176 DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTL----------CTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 764 NKKLSDATQRyAEKKLEAERLLAENDKLTKNVSRLEAvfvapEKHEKELMGLKSNIAELKMQLCELNKKCGEGQEKIRAL 843
Cdd:TIGR00618 246 TQKREAQEEQ-LKKQQLLKQLRARIEELRAQEAVLEE-----TQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSK 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 844 MSENTSLKktlssQYVPAKTHEEVKASLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLENVQNQMKAdyvs 923
Cdd:TIGR00618 320 MRSRAKLL-----MKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTT---- 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 924 LEEHSRKMNMANQSLKEAQDAHTALLADYRQGQEEIVTLHAEIKAQKKELDTIQECIKLKYAPLSRMEECERKFKATEKA 1003
Cdd:TIGR00618 391 LTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1004 LKEQLSEQthkgQVRDEEVKKGKQENERLRKDLAALQKELKDRNVLVEEAREA-------ERALSRKTEELGKQLKELSQ 1076
Cdd:TIGR00618 471 REQQLQTK----EQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDidnpgplTRRMQRGEQTYAQLETSEED 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1077 KYSDVKSEREKLVEEKAKQTSEILAAQNLLQKQPVPLEQVEALKTSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLLE 1156
Cdd:TIGR00618 547 VYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQD 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1157 NQKSSSV--TLADHLQLKEA---------LEKEVGIMKASLREKEEES-----------QKKTKEVSKLQTEVQNTKQAL 1214
Cdd:TIGR00618 627 LQDVRLHlqQCSQELALKLTalhalqltlTQERVREHALSIRVLPKELlasrqlalqkmQSEKEQLTYWKEMLAQCQTLL 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1215 KNLET------REVVDMSKYKAT-KNDLETQISNLNDKLASLNRKYDQVCEEKVSA---KDEKELLHL-------NIEQE 1277
Cdd:TIGR00618 707 RELEThieeydREFNEIENASSSlGSDLAAREDALNQSLKELMHQARTVLKARTEAhfnNNEEVTAALqtgaelsHLAAE 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1278 IRDQKERCDKSLTTIMELQQRIQESAKQIEAKDNKITELLndVERLKQALNGLSQLTYSSGGPTKRQSQLVDTLQQRVRD 1357
Cdd:TIGR00618 787 IQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETL--VQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQL 864
|
....
gi 564364065 1358 LQQQ 1361
Cdd:TIGR00618 865 TQEQ 868
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
492-1255 |
2.46e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 52.36 E-value: 2.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 492 EQIKQLEDALKDVQKRMYESegKVKQMQTHFLALKEHLTNEAATGSHRVIEELREQLKDMKGKYEGASAEVGKLRNQIKQ 571
Cdd:TIGR01612 974 DKINELDKAFKDASLNDYEA--KNNELIKYFNDLKANLGKNKENMLYHQFDEKEKATNDIEQKIEDANKNIPNIEIAIHT 1051
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 572 S-EMLVEGFKRDESRLVEE-NKRLQKECST--CEIDRERRGRRVTELEGQLKELGAKLALSVptETFESMKSSLSNDISE 647
Cdd:TIGR01612 1052 SiYNIIDEIEKEIGKNIELlNKEILEEAEIniTNFNEIKEKLKHYNFDDFGKEENIKYADEI--NKIKDDIKNLDQKIDH 1129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 648 KAKRLAEVGRDYESSQGEIRQLKRDLESVRAQHIRPEEHEQLRSRLEQKSGELGKKVTELTLKNQTL---------QKEV 718
Cdd:TIGR01612 1130 HIKALEEIKKKSENYIDEIKAQINDLEDVADKAISNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLneiaeiekdKTSL 1209
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 719 EKLYADNKLLNQQVHSLTVEMKTRyvPLRVSEEMKKAHDVNVEDLNkKLSDATQRYAEKKLEAERLLAENDKLTKNVSRL 798
Cdd:TIGR01612 1210 EEVKGINLSYGKNLGKLFLEKIDE--EKKKSEHMIKAMEAYIEDLD-EIKEKSPEIENEMGIEMDIKAEMETFNISHDDD 1286
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 799 EAVFVAPEKHEKELmglkSNIAELKMQLCELNKKcgegqekiralMSENTSLKKTLSSQYVPAKTH-EEVKASLSSTLEK 877
Cdd:TIGR01612 1287 KDHHIISKKHDENI----SDIREKSLKIIEDFSE-----------ESDINDIKKELQKNLLDAQKHnSDINLYLNEIANI 1351
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 878 TNRALLDSKKRLDDTSQEFS-KLREENEVLRRNLENVQNQMKA--DYVSLEEHSRKMnmanQSLKEAQDAHtALLADYRQ 954
Cdd:TIGR01612 1352 YNILKLNKIKKIIDEVKEYTkEIEENNKNIKDELDKSEKLIKKikDDINLEECKSKI----ESTLDDKDID-ECIKKIKE 1426
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 955 GQEEIVTLHAEIKAQKKELDTIQECIKLKYaplSRMEECERKfkaTEKALKEQLSEQTHKGQVRDEEVKKGKQENERLRK 1034
Cdd:TIGR01612 1427 LKNHILSEESNIDTYFKNADENNENVLLLF---KNIEMADNK---SQHILKIKKDNATNDHDFNINELKEHIDKSKGCKD 1500
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1035 DLAALQKELKDRNVLVEEAREAERALSRKTEELgkqlkELSQKYSDVKSEREKLVEE-KAKQTSEILAAQNLLQKqpvpl 1113
Cdd:TIGR01612 1501 EADKNAKAIEKNKELFEQYKKDVTELLNKYSAL-----AIKNKFAKTKKDSEIIIKEiKDAHKKFILEAEKSEQK----- 1570
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1114 eqVEALKtslngtiehlKEELRSKERCL--EREQQAVSQLQQLLENQKSSSVTLA-------DHLQLKEALEKEVGIMka 1184
Cdd:TIGR01612 1571 --IKEIK----------KEKFRIEDDAAknDKSNKAAIDIQLSLENFENKFLKISdikkkinDCLKETESIEKKISSF-- 1636
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564364065 1185 SLREKEEESQKKTKEVSKLQTEVQNTKQALKNLEtrevvdmskykatknDLETQISNLNDKLASLNRKYDQ 1255
Cdd:TIGR01612 1637 SIDSQDTELKENGDNLNSLQEFLESLKDQKKNIE---------------DKKKELDELDSEIEKIEIDVDQ 1692
|
|
| PHA02798 |
PHA02798 |
ankyrin-like protein; Provisional |
152-260 |
2.90e-06 |
|
ankyrin-like protein; Provisional
Pssm-ID: 222931 [Multi-domain] Cd Length: 489 Bit Score: 51.76 E-value: 2.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 152 IQLLCDHGASVNAKDIDGRTPL--VLATQMCRPT---ICQLLIDRGADVNSRDKQNRTAL--MLGCEY-GCRDAVEVLVR 223
Cdd:PHA02798 54 VKLFINLGANVNGLDNEYSTPLctILSNIKDYKHmldIVKILIENGADINKKNSDGETPLycLLSNGYiNNLEILLFMIE 133
|
90 100 110
....*....|....*....|....*....|....*...
gi 564364065 224 NGADLTLLDALGHDS-SYYARIGDNLDIlNLLKTASES 260
Cdd:PHA02798 134 NGADTTLLDKDGFTMlQVYLQSNHHIDI-EIIKLLLEK 170
|
|
| Ank_2 |
pfam12796 |
Ankyrin repeats (3 copies); |
173-254 |
4.67e-06 |
|
Ankyrin repeats (3 copies);
Pssm-ID: 463710 [Multi-domain] Cd Length: 91 Bit Score: 46.26 E-value: 4.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 173 LVLATQMCRPTICQLLIDRGADVNSRDKQNRTALMLGCEYGCRDAVEVLVRNGAdltlLDALGHDSS--YYARIGDNLDI 250
Cdd:pfam12796 1 LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHAD----VNLKDNGRTalHYAARSGHLEI 76
|
....
gi 564364065 251 LNLL 254
Cdd:pfam12796 77 VKLL 80
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
492-707 |
4.72e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 4.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 492 EQIKQLEDALKDVQK--RMYESEGKVKQMQTHFLALKEHLTNEAATgshRVIEELREQLKDMKGKYEGASAEVGKLRNQI 569
Cdd:COG4913 249 EQIELLEPIRELAERyaAARERLAELEYLRAALRLWFAQRRLELLE---AELEELRAELARLEAELERLEARLDALREEL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 570 KQSEMLVEGFK-RDESRLVEENKRLQKEcstceidRERRGRRVTELEGQLKELGAKLALSvpTETFESMKS-------SL 641
Cdd:COG4913 326 DELEAQIRGNGgDRLEQLEREIERLERE-------LEERERRRARLEALLAALGLPLPAS--AEEFAALRAeaaalleAL 396
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564364065 642 SNDISEKAKRLAEVGRDYESSQGEIRQLKRDLESVRAQHIR-PEEHEQLRSRLEQksgELGKKVTEL 707
Cdd:COG4913 397 EEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNiPARLLALRDALAE---ALGLDEAEL 460
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
955-1404 |
5.08e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.12 E-value: 5.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 955 GQEEIVTLHAEIKAQKKELDTIQECIKLKYAPLSRMEECERKFKATEKALKE----------QLSEQTHKGQVRDEEVKK 1024
Cdd:TIGR00618 174 PLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEkelkhlrealQQTQQSHAYLTQKREAQE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1025 GKQENERLRKDLAALQKELKDRNVLVEEAREaERALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEILAAQN 1104
Cdd:TIGR00618 254 EQLKKQQLLKQLRARIEELRAQEAVLEETQE-RINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAA 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1105 LLQKQPVPLEQVEALKTSLNG----TIEHLKEELRSKERCLER-EQQAVSQLQQLLENQKSSSVTLAdhlQLKEALEKEV 1179
Cdd:TIGR00618 333 HVKQQSSIEEQRRLLQTLHSQeihiRDAHEVATSIREISCQQHtLTQHIHTLQQQKTTLTQKLQSLC---KELDILQREQ 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1180 GIMKASLREKEEESQKKT----------KEVSKLQTEVQNTKQALKnLETREVVDMSKYKATKNDLETQISNLNDKLASL 1249
Cdd:TIGR00618 410 ATIDTRTSAFRDLQGQLAhakkqqelqqRYAELCAAAITCTAQCEK-LEKIHLQESAQSLKEREQQLQTKEQIHLQETRK 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1250 NRKYDQVCEEKVSAKD--EKELLHLNIEQEIRDQKE----RCDKSLTTIMELQQRIQESAKQIEAKDNKITELLNDVERL 1323
Cdd:TIGR00618 489 KAVVLARLLELQEEPCplCGSCIHPNPARQDIDNPGpltrRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEI 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1324 KQALNGLSQLTYSSggptkrqSQLVDTLQQRVRDLQQQLADADRQHQEVIAIYRTHLLSAAQGHMDEDVQAALLQIIQMR 1403
Cdd:TIGR00618 569 QQSFSILTQCDNRS-------KEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQEL 641
|
.
gi 564364065 1404 Q 1404
Cdd:TIGR00618 642 A 642
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
491-722 |
5.42e-06 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 50.78 E-value: 5.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 491 DEQIKQLEDALKDVQKRMYESEGKVKQMQTHFLALKEHLTNEAATgSHRVIEELREQLKDMKGKYEGASAEVGKLRNQIK 570
Cdd:PHA02562 187 DMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKT-IKAEIEELTDELLNLVMDIEDPSAALNKLNTAAA 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 571 QSEMLVEGFKRDESrLVEENKrlqkECSTCEIDRERRGRRVTELEGQLKELGAKLALsvptetfesmkssLSNDISEKAK 650
Cdd:PHA02562 266 KIKSKIEQFQKVIK-MYEKGG----VCPTCTQQISEGPDRITKIKDKLKELQHSLEK-------------LDTAIDELEE 327
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564364065 651 RLAEVGRDYESSQG---EIRQLKRDLESVRAQHIRPE-EHEQLRSRLEQKSGELGKKVTELTLKNQTLQKEVEKLY 722
Cdd:PHA02562 328 IMDEFNEQSKKLLElknKISTNKQSLITLVDKAKKVKaAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403
|
|
| PHA03100 |
PHA03100 |
ankyrin repeat protein; Provisional |
140-254 |
7.97e-06 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 222984 [Multi-domain] Cd Length: 422 Bit Score: 50.05 E-value: 7.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 140 LHDAAMADCPSSIQLLCDHGASVNAKDIDGRTPLVLATQM-----CRPTICQLLIDRGADVNSRDKQNRTALM--LGCEY 212
Cdd:PHA03100 39 LYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIkynltDVKEIVKLLLEYGANVNAPDNNGITPLLyaISKKS 118
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 564364065 213 GCRDAVEVLVRNGADLTLLDALGHDSSYYARIG--DNLDILNLL 254
Cdd:PHA03100 119 NSYSIVEYLLDNGANVNIKNSDGENLLHLYLESnkIDLKILKLL 162
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
488-1081 |
8.21e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.40 E-value: 8.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 488 EDSDEQIKQLEDALKDVQKRMYESEGKVKQMQTHFLALKEHLTN-EAATGSHRvieELREQLKDMKGKYEGASAEVGKLR 566
Cdd:TIGR04523 162 NDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNlKKKIQKNK---SLESQISELKKQNNQLKDNIEKKQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 567 NQIKQSEMLVEGFKRDESRLVEENKRLQKECSTCEIDRERRGRRVTELEGQLKELGAKLalsvptetfESMKSSLSNDIS 646
Cdd:TIGR04523 239 QEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEI---------SDLNNQKEQDWN 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 647 EKAKrlaevgrdyessqGEIRQLKRDLESVRAQhirPEEHEQLRSRLEQKSGELGKKVTELTLKNQTLQKEVEKLYADNK 726
Cdd:TIGR04523 310 KELK-------------SELKNQEKKLEEIQNQ---ISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 727 LLNQQVHSLTVEMKTRyvplrvseemkkahDVNVEDLNKKLSDATQRYAEKKLEAERLLAENDKLTKNVSRLEAVFvapE 806
Cdd:TIGR04523 374 KLKKENQSYKQEIKNL--------------ESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETI---I 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 807 KHEKELMGLKSNIAELKMQLCELNKKCGEGQEKIRALMSENTSLKKTLSsqyvpaKTHEEVKaSLSSTLEKTNRALLDSK 886
Cdd:TIGR04523 437 KNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLE------QKQKELK-SKEKELKKLNEEKKELE 509
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 887 KRLDDTSQEFSKLREENEvlrrNLENVQNQMKADYVSLEEHSRKM--NMANQSLKEAQDahtalladyrQGQEEIVTLHA 964
Cdd:TIGR04523 510 EKVKDLTKKISSLKEKIE----KLESEKKEKESKISDLEDELNKDdfELKKENLEKEID----------EKNKEIEELKQ 575
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 965 EIKAQKKELDTIQECIKlkyaplsrmeecerKFKATEKALKEQLSEQTHKGQVRDEEVKKGKQENERLRKDLAALQKELK 1044
Cdd:TIGR04523 576 TQKSLKKKQEEKQELID--------------QKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKN 641
|
570 580 590
....*....|....*....|....*....|....*..
gi 564364065 1045 DRNVLVEEAREAERALSRKTEELGKQLKELSQKYSDV 1081
Cdd:TIGR04523 642 KLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDI 678
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
957-1346 |
8.42e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.74 E-value: 8.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 957 EEIVTLHAEIKAQKKELDTIQECIKLKYAPLSRMEECERKFKATEKALKEQLSEQTHKGQVRDEEVKKGKQENERLRKDL 1036
Cdd:pfam02463 160 EEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERI 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1037 AALQKELKDrnvlveeaREAERALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEILAAQNLlqkqpvPLEQV 1116
Cdd:pfam02463 240 DLLQELLRD--------EQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKS------ELLKL 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1117 EALKTSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLLENQKSSSVTLADHLQLKEALEKEvgimKASLREKEEESQKK 1196
Cdd:pfam02463 306 ERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEK----LEQLEEELLAKKKL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1197 TKEVSKLQTEVQNTKQALKNLETREVVDMSKYKATKNDLETQISNLNDKLASLNRKYDQVCEEKVSAKDEKELLHLNIEQ 1276
Cdd:pfam02463 382 ESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLL 461
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1277 EIRDQKERCDKSLTTIMELQQRIQESAKQIEAKDNKITELLNDVERLKQALNGLSQLTYSSGGPTKRQSQ 1346
Cdd:pfam02463 462 KDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRL 531
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
302-1291 |
8.90e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.43 E-value: 8.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 302 EMENEDLKEKLRKIQQEQRILldkvnglqLQLNEEVMVADDLESEREKLKSLLaaKEKQHEESLRTIEALKNRFKYFESD 381
Cdd:TIGR00606 244 ENELDPLKNRLKEIEHNLSKI--------MKLDNEIKALKSRKKQMEKDNSEL--ELKMEKVFQGTDEQLNDLYHNHQRT 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 382 hpgpgSYSSNRKEDMLHKQGQMYTADSQctspgvpphmqsrsmlrplelSLPSQTSYSENEILKKELEAMRTFCDSAKQD 461
Cdd:TIGR00606 314 -----VREKERELVDCQRELEKLNKERR---------------------LLNQEKTELLVEQGRLQLQADRHQEHIRARD 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 462 RLKLQNelahkvaeckALALECERVKEDSDEQIkQLEDALKDVQKRMyESEGKVKQMQTHFLALKEHLTNEAATgshRVI 541
Cdd:TIGR00606 368 SLIQSL----------ATRLELDGFERGPFSER-QIKNFHTLVIERQ-EDEAKTAAQLCADLQSKERLKQEQAD---EIR 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 542 EELREQLKDMKGKYEGASAEVGKLRNQIKQSEMLVEGFKrdesRLVEENKRLQKecstceidrerrgrrvtelegQLKEL 621
Cdd:TIGR00606 433 DEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSD----RILELDQELRK---------------------AEREL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 622 gAKLALSVPTETFESMKSSLSNDISEKAKRLAEVGRDYESSQGEIRQLKRDLESVRAqhiRPEEHEQLRSRLEQKSGELG 701
Cdd:TIGR00606 488 -SKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKD---KMDKDEQIRKIKSRHSDELT 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 702 KKVTEltlknqtlqkeveklYADNKLLNQQVHSLTVEMKTRYVPLRvseemkkahdvnveDLNKKLSDATQRYAEKKLEA 781
Cdd:TIGR00606 564 SLLGY---------------FPNKKQLEDWLHSKSKEINQTRDRLA--------------KLNKELASLEQNKNHINNEL 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 782 ERLLAENDKLTKNVSRLeavfVAPEKHEKELMGLKSNIAELKMQLCELNKKCGEGQEKIRALMSENTSLKKTLSSQYvpa 861
Cdd:TIGR00606 615 ESKEEQLSSYEDKLFDV----CGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVF--- 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 862 ktheEVKASLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLENVQNQMKADYVSLEEHSRKMNMANQslkea 941
Cdd:TIGR00606 688 ----QTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNR----- 758
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 942 qdahtalladyrqgqeEIVTLHAEIKAQKKELDTI---QECIKLKYAPLSRMEECERKFKATEKALKEQLSE-QTHKGQV 1017
Cdd:TIGR00606 759 ----------------DIQRLKNDIEEQETLLGTImpeEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKlQGSDLDR 822
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1018 RDEEVKKGKQE-NERLRKdlaaLQKELKDRNVLVEEAREAERALSRKTEELGKQLKELSQKYSDVKSEREKLvEEKAKQT 1096
Cdd:TIGR00606 823 TVQQVNQEKQEkQHELDT----VVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQL-VELSTEV 897
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1097 SEILAAQNLLQKQPVPLEQvealktSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLLENQKSSSVTLADHLQ-----L 1171
Cdd:TIGR00606 898 QSLIREIKDAKEQDSPLET------FLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQdgkddY 971
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1172 KEALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQA---LKNLETREVVDmSKYKATKNDLETQISNLNDKLAS 1248
Cdd:TIGR00606 972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQerwLQDNLTLRKRE-NELKEVEEELKQHLKEMGQMQVL 1050
|
970 980 990 1000
....*....|....*....|....*....|....*....|...
gi 564364065 1249 LNRKYDQVCEEKVSAKDEKELLHLNIEQEIRDQKERCDKSLTT 1291
Cdd:TIGR00606 1051 QMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
647-1202 |
9.40e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.56 E-value: 9.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 647 EKAKRLAEVGRDYESSQGEIRQLKRDL-ESVRAQHIRPEEHEQLRSRLEQKSGELGKKVTELTLKNQTLQKEVEKLYADN 725
Cdd:pfam01576 19 ERQQKAESELKELEKKHQQLCEEKNALqEQLQAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEERSQQLQNEK 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 726 KLLNQQVHSLTVEM--------KTRYVPLRVSEEMKKAHD--VNVEDLNKKLSDATQRYAEKKLEAERLLAENDKLTKNV 795
Cdd:pfam01576 99 KKMQQHIQDLEEQLdeeeaarqKLQLEKVTTEAKIKKLEEdiLLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 796 SRL----EAVFVAPE------------------KHEKELMGLKSNIAELKMQLCELNKKCG------------------- 834
Cdd:pfam01576 179 SKLknkhEAMISDLEerlkkeekgrqelekakrKLEGESTDLQEQIAELQAQIAELRAQLAkkeeelqaalarleeetaq 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 835 --EGQEKIRALMSENTSLKKTLSSQYVPAKTHEEVKASLSSTLEKTNRALLDSkkrLDDTS--QEFSKLRE-ENEVLRRN 909
Cdd:pfam01576 259 knNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDT---LDTTAaqQELRSKREqEVTELKKA 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 910 LENVQNQMKADYVSL-EEHSRKMNMANQSLKEAQDAHTALLADYRQGQEEIVTLHAEIKA-QKKELDTIQECIKLKyapl 987
Cdd:pfam01576 336 LEEETRSHEAQLQEMrQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTlQQAKQDSEHKRKKLE---- 411
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 988 SRMEECERKFKATEKAlKEQLSEQTHKGQVRDEEVKKGKQENE----RLRKDLAALQKELKDRNVL-------------- 1049
Cdd:pfam01576 412 GQLQELQARLSESERQ-RAELAEKLSKLQSELESVSSLLNEAEgkniKLSKDVSSLESQLQDTQELlqeetrqklnlstr 490
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1050 --------------VEEAREAERALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEILAAQNLLQKQPVPLEQ 1115
Cdd:pfam01576 491 lrqledernslqeqLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDK 570
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1116 VEALKTSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLLENQKSSSVTLADHLQLKEALEKEVGIMKASLREKEEESQK 1195
Cdd:pfam01576 571 LEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALE 650
|
....*..
gi 564364065 1196 KTKEVSK 1202
Cdd:pfam01576 651 AKEELER 657
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
806-1333 |
9.46e-06 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 50.46 E-value: 9.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 806 EKHEKELMGLK---SNIAELKMQLCELNKKCGEGQEKIRALMSENTSLKKTLSSQYVPAKTHEEVKASLSSTLEKTNRA- 881
Cdd:COG5022 878 ELAERQLQELKidvKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELn 957
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 882 -LLDSKKRLDDTSQEFSKLREENEVLRRNL----ENVQNQMKA------DYVSLEEHS---RKMNMANQSLKEAQD---- 943
Cdd:COG5022 958 kLHEVESKLKETSEEYEDLLKKSTILVREGnkanSELKNFKKElaelskQYGALQESTkqlKELPVEVAELQSASKiiss 1037
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 944 AHTALLAdyRQGQEEIVTLH----AEIKAQKKELDTIQECIKLKYAPLSRMEECERKFKATE----KALKEQLSEQTHKG 1015
Cdd:COG5022 1038 ESTELSI--LKPLQKLKGLLllenNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINvkdlEVTNRNLVKPANVL 1115
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1016 QVRDEEVKK---GKQENERLRKDLAALQKELKDRNVLVE-----------EAREAERALSRKTEELGKQLKELSQKY--- 1078
Cdd:COG5022 1116 QFIVAQMIKlnlLQEISKFLSQLVNTLEPVFQKLSVLQLeldglfweanlEALPSPPPFAALSEKRLYQSALYDEKSkls 1195
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1079 -SDVKSEREKLVEEKAKQTSEILAA---QNLLQKQPVPLEQVEALKTSLNGTIEHLKEELRSKERCLEREQQAVSQLQQL 1154
Cdd:COG5022 1196 sSEVNDLKNELIALFSKIFSGWPRGdklKKLISEGWVPTEYSTSLKGFNNLNKKFDTPASMSNEKLLSLLNSIDNLLSSY 1275
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1155 LENQKSSSVTLADHLQLKEALEKEVGIMKAS-----------LREKEEESQKKTKEVSKLQTEVQNTKQALKNLETRevv 1223
Cdd:COG5022 1276 KLEEEVLPATINSLLQYINVGLFNALRTKASslrwksatevnYNSEELDDWCREFEISDVDEELEELIQAVKVLQLL--- 1352
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1224 dmskykatKNDLEtQISNLNDKLASLNrkYDQVceEKVSAKDEKELLHLNIEQEIRDQ--KERCDKSLTTIMELQQRIQE 1301
Cdd:COG5022 1353 --------KDDLN-KLDELLDACYSLN--PAEI--QNLKSRYDPADKENNLPKEILKKieALLIKQELQLSLEGKDETEV 1419
|
570 580 590
....*....|....*....|....*....|..
gi 564364065 1302 SAKQIEAKDNKITELLNDVERLKQALNGLSQL 1333
Cdd:COG5022 1420 HLSEIFSEEKSLISLDRNSIYKEEVLSSLSAL 1451
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
637-1205 |
9.83e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 50.29 E-value: 9.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 637 MKSSLSNDISEKAKRLAEVgRDYESSQGEIRQLKRDLESVRAQhirPEEHEQLRSRLEQKSGEL---GKKVTELTLKNQT 713
Cdd:PRK01156 140 MDSLISGDPAQRKKILDEI-LEINSLERNYDKLKDVIDMLRAE---ISNIDYLEEKLKSSNLELeniKKQIADDEKSHSI 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 714 LQKEVEKLYADNKLLNQQVHSLTVEMKTryvpLRVSEEMKKAHDVNVEDLNKKLSDATQRYAEKKLEAERLLA-ENDKLT 792
Cdd:PRK01156 216 TLKEIERLSIEYNNAMDDYNNLKSALNE----LSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKiINDPVY 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 793 KNVSRLEAVFvapeKHEKELMGLKSNIAELKMQLC--ELNKKCGEGQEKIRALMSENTSLKKTLSSQYVPAKTHEEVKAS 870
Cdd:PRK01156 292 KNRNYINDYF----KYKNDIENKKQILSNIDAEINkyHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNS 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 871 LSSTLEKTNRALLDSKKRLDDTSQEFSK-----------LREENEVLRRNLE-------NVQNQMKADYVSLEEHSRKMN 932
Cdd:PRK01156 368 YLKSIESLKKKIEEYSKNIERMSAFISEilkiqeidpdaIKKELNEINVKLQdisskvsSLNQRIRALRENLDELSRNME 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 933 MANQSLK-------EAQDAHTALLADYrqgQEEIVTLHAEIKAQKKELDTIQECIKLKYAPLSRMEECERKFKATEKALK 1005
Cdd:PRK01156 448 MLNGQSVcpvcgttLGEEKSNHIINHY---NEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKI 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1006 EQLSEQTHKGQVRDEEVKKGKQENERLRKDLAALQKELKDR------NVLVEEAREAERALSRKTEELGKQLKELSQKYS 1079
Cdd:PRK01156 525 ESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSkrtswlNALAVISLIDIETNRSRSNEIKKQLNDLESRLQ 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1080 DVKSEREKLVEEKAKQTSEILAAQNLLQKQPVPLEQVEALKTSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLLENQK 1159
Cdd:PRK01156 605 EIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLK 684
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 564364065 1160 SSSVTLADHLQLKEALEKEVGIMKASLREKEEESQKKTKEVSKLQT 1205
Cdd:PRK01156 685 KSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKK 730
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
837-1071 |
1.11e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 1.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 837 QEKIRALMSENTSLKKTLSSQyvpakthEEVKASLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLENVQNQ 916
Cdd:COG4942 26 EAELEQLQQEIAELEKELAAL-------KKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 917 MKADYVSLEEHSRKMNMANQS-----LKEAQDAHTAL--LADYRQGQEEIVTLHAEIKAQKKELDTIQECIKLKYAPLSR 989
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQpplalLLSPEDFLDAVrrLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 990 MEEcerKFKATEKALKEQLSEQTHKGQVRDEEVKKGKQENERLRKDLAALQKELKDrnVLVEEAREAERALSRKTEELGK 1069
Cdd:COG4942 179 LLA---ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR--LEAEAAAAAERTPAAGFAALKG 253
|
..
gi 564364065 1070 QL 1071
Cdd:COG4942 254 KL 255
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1053-1290 |
1.34e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1053 AREAERALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEILAAQNLLQKqpvpleqvealktslngtiehLKE 1132
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA---------------------LEQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1133 ELRSKERCLEREQQAVSQLQQLLENQKSSSVTLADHLQLKEALEKEVGIMKAS-----------LREKEEESQKKTKEVS 1201
Cdd:COG4942 77 ELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEdfldavrrlqyLKYLAPARREQAEELR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1202 KLQTEVQNTKQALKNLETREVVDMSKYKATKNDLETQISNLNDKLASLNRKYDQVCEEKVSAKDEKELLHLNIEQEIRDQ 1281
Cdd:COG4942 157 ADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
....*....
gi 564364065 1282 KERCDKSLT 1290
Cdd:COG4942 237 AAAAERTPA 245
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
886-1227 |
1.68e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 1.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 886 KKRLDDTSQEFSKLREENEVLRRNLENVQNQMKADYVSLEEHSRKMNMANQSLKEAQDAHTALLADYRQ--------GQE 957
Cdd:pfam02463 172 KEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDllqellrdEQE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 958 EIVTLHAEIKAQKKELDTIQECIKLKyapLSRMEECERKFKATEKALKEQLSEQTHKGQVRDEEVKKGKQENERLRKdla 1037
Cdd:pfam02463 252 EIESSKQEIEKEEEKLAQVLKENKEE---EKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKK--- 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1038 aLQKELKDRNVLVEEAREAERALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEILAAQNLLQKQPVPLEQVE 1117
Cdd:pfam02463 326 -AEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1118 ALKTSLNG---TIEHLKEELRSKERCLEREQQAVSQLQQLLENQKSSSVTLADHLQLKEALEKEvgimkasLREKEEESQ 1194
Cdd:pfam02463 405 KEAQLLLElarQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELK-------KSEDLLKET 477
|
330 340 350
....*....|....*....|....*....|...
gi 564364065 1195 KKTKEVSKLQTEVQNTKQALKNLETREVVDMSK 1227
Cdd:pfam02463 478 QLVKLQEQLELLLSRQKLEERSQKESKARSGLK 510
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
880-1378 |
2.09e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 2.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 880 RALLDSKKRLDDTSQEFSKLREENEVLRRnLENVQNQMKADYVSLEEHSRKMNMAN-----QSLKEAQDAHTALLADYRQ 954
Cdd:COG4913 228 DALVEHFDDLERAHEALEDAREQIELLEP-IRELAERYAAARERLAELEYLRAALRlwfaqRRLELLEAELEELRAELAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 955 GQEEIVTLHAEIKAQKKELDTIQEciKLKYAPLSRMEECERKFKATEKALKE------QLSEQTHKGQVRDEEVKKGKQE 1028
Cdd:COG4913 307 LEAELERLEARLDALREELDELEA--QIRGNGGDRLEQLEREIERLERELEErerrraRLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1029 N-ERLRKDLAALQKELKDRNVLVEEAREAERALSRKTEELGKQLKELSQKYSDVKSE----REKLVEEKAKQTSEILAAQ 1103
Cdd:COG4913 385 LrAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARllalRDALAEALGLDEAELPFVG 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1104 NLLQKQP---------------------VPLEQVEALKTSLNGTieHLKEELRSkerclereqQAVSQLQQLLENQKSSS 1162
Cdd:COG4913 465 ELIEVRPeeerwrgaiervlggfaltllVPPEHYAAALRWVNRL--HLRGRLVY---------ERVRTGLPDPERPRLDP 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1163 VTLADHLQLKE-----ALEKEV-------------------------GIMKASLREKEEESQKKTKEVSKLQtevQNTKQ 1212
Cdd:COG4913 534 DSLAGKLDFKPhpfraWLEAELgrrfdyvcvdspeelrrhpraitraGQVKGNGTRHEKDDRRRIRSRYVLG---FDNRA 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1213 ALKNLETRevvdMSKYKATKNDLETQISNLNDKLASLNRKYD--QVCEEKVSAKDEKELLHLNIeQEIRDQKERCDKSLT 1290
Cdd:COG4913 611 KLAALEAE----LAELEEELAEAEERLEALEAELDALQERREalQRLAEYSWDEIDVASAEREI-AELEAELERLDASSD 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1291 TIMELQQRIQESAKQIEAKDNKITELLNDVERLKQALNGLSQLtyssggpTKRQSQLVDTLQQRVRDLQQQLADADRQHQ 1370
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE-------LDELQDRLEAAEDLARLELRALLEERFAAA 758
|
....*...
gi 564364065 1371 EVIAIYRT 1378
Cdd:COG4913 759 LGDAVERE 766
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
953-1292 |
2.29e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.97 E-value: 2.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 953 RQGQEEIVTLHAEIKAQKKE--LDTIQECIKLKYAPLSRMEECERKfkATEKALKEQLSEQTHK--GQVRDEEVKKgkqE 1028
Cdd:pfam17380 287 RQQQEKFEKMEQERLRQEKEekAREVERRRKLEEAEKARQAEMDRQ--AAIYAEQERMAMERERelERIRQEERKR---E 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1029 NERLRKDLAALQkelkdrnvlVEEAREAER---ALSRKTEELGKQLkELSQKYSDVKSEREKLVEEKAKQTSEILAAQ-N 1104
Cdd:pfam17380 362 LERIRQEEIAME---------ISRMRELERlqmERQQKNERVRQEL-EAARKVKILEEERQRKIQQQKVEMEQIRAEQeE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1105 LLQKQPVPLEQvealktslngtiEHLKEELRSKERCLEREQQAVSQLQQLLENQKSSSVTLADHLQLKEALEKEVGIMKA 1184
Cdd:pfam17380 432 ARQREVRRLEE------------ERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEK 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1185 SLREKEEESQKKTKEVSKLQTEVQNTKQALKNLETREVVDMSKYKATKNDLETQISNLNDKLASLNRKYDqvceekvSAK 1264
Cdd:pfam17380 500 ELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLE-------AME 572
|
330 340
....*....|....*....|....*...
gi 564364065 1265 DEKELLHLNIEQEIRDQKERCDKSLTTI 1292
Cdd:pfam17380 573 REREMMRQIVESEKARAEYEATTPITTI 600
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
789-1332 |
2.39e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 49.13 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 789 DKLTKNVSRLEAVFVAPEKHEKELMGLKSNIAELKMQLCELNKKCGEGQEKIRALMSENTSLKKT---LSSQYVPAKTHE 865
Cdd:PRK01156 176 DMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSAlneLSSLEDMKNRYE 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 866 EVKASLSSTLEktnrALLDSKKRLDDTSQEFSKLREENEVLRRNLENVQNQMKADYVSLEEHSRKMNMANQSLKEAQDAH 945
Cdd:PRK01156 256 SEIKTAESDLS----MELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKL 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 946 TALLADYRQgQEEIVTLHAEIKAQKKELDTIQECIKLKYAPLSRMEECERKFKATEKALKEQLSEQTHKGQVRDEEVKKg 1025
Cdd:PRK01156 332 SVLQKDYND-YIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKK- 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1026 kqENERLRKDLAALQKELKDRNVLVEEAREAERALSRKTEELGKQLK--ELSQKYSDVKSER--EKLVEEKAKQTSEILA 1101
Cdd:PRK01156 410 --ELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVcpVCGTTLGEEKSNHiiNHYNEKKSRLEEKIRE 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1102 AQNLLQKQPVPLEQVEALKTSLNGtiehlkeelrSKERCLEREQQAVSQLQQLLENQKSSSVTLAD-HLQLKEALEKEVG 1180
Cdd:PRK01156 488 IEIEVKDIDEKIVDLKKRKEYLES----------EEINKSINEYNKIESARADLEDIKIKINELKDkHDKYEEIKNRYKS 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1181 IMKASLREKEEE-----SQKKTKEVSKLQTEVQNTKQALKNLETREVVDMSKYKATKNDLETQISNLNDKLASLNRKYDQ 1255
Cdd:PRK01156 558 LKLEDLDSKRTSwlnalAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNE 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1256 VCEEKVSAKDEKELLHlNIEQEIRDQKERCDKSLTT---IMELQQRIQESAKQIEAKDNKITELLNDVERLKQALNGLSQ 1332
Cdd:PRK01156 638 IQENKILIEKLRGKID-NYKKQIAEIDSIIPDLKEItsrINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSD 716
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
632-1381 |
2.46e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.96 E-value: 2.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 632 ETFESMKSSLSNDISEKAKRLAEVGRDYESSQGEIRQ----LKRDLESVRAQH-----IRPEE---HEQLRSRLEQKSGE 699
Cdd:pfam15921 74 EHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQsvidLQTKLQEMQMERdamadIRRREsqsQEDLRNQLQNTVHE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 700 L--GKKVTELTLKNQTLQ-KEVEKLYADNKLLNQQVHSLTVEMKtryvplrvSEEMKKAHDVNvedlnkklSDATQRYAE 776
Cdd:pfam15921 154 LeaAKCLKEDMLEDSNTQiEQLRKMMLSHEGVLQEIRSILVDFE--------EASGKKIYEHD--------SMSTMHFRS 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 777 KKLEAERLLAEndkLTKNVSRLEAVFVAPEKHEKELMGLKSNIAELKMQlcelnkkcgEGQEKIRALMSENTSLKKTLSS 856
Cdd:pfam15921 218 LGSAISKILRE---LDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQ---------QHQDRIEQLISEHEVEITGLTE 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 857 QYVPAKTH-EEVKASLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLENvqnqmkadyvSLEEHSRKMNMAN 935
Cdd:pfam15921 286 KASSARSQaNSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYED----------KIEELEKQLVLAN 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 936 QSLKEAQDAHTALLADYRQGQEEIVTLHAEIKAQKKELDTIQECIKlkyaplsRMEECERKFKATEKALKEQLSEQTHKG 1015
Cdd:pfam15921 356 SELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNK-------RLWDRDTGNSITIDHLRRELDDRNMEV 428
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1016 QVRDEEVKKGKQENE-RLRKDLAALQ---KELKDRNVLVEEAREAERALSRKTEELGKQ---LKELSQKYSDVKS---ER 1085
Cdd:pfam15921 429 QRLEALLKAMKSECQgQMERQMAAIQgknESLEKVSSLTAQLESTKEMLRKVVEELTAKkmtLESSERTVSDLTAslqEK 508
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1086 EKLVEEKAKQTSEILAAQNLLQKQPVPLEQVEALKTSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLL-ENQKSSSVT 1164
Cdd:pfam15921 509 ERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVgQHGRTAGAM 588
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1165 LADHLQLKEALE------KEVGIMK----ASLREKE-----------------EESQKKTKEVSK----LQTEVQNTKQA 1213
Cdd:pfam15921 589 QVEKAQLEKEINdrrlelQEFKILKdkkdAKIRELEarvsdlelekvklvnagSERLRAVKDIKQerdqLLNEVKTSRNE 668
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1214 LKNLETREVVDMSKYKATKNDLETQISNLNDKLASLNRKYDQ---VCEEKVSAKDEKELLHLNIEQEIRDQKERCDKSLT 1290
Cdd:pfam15921 669 LNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQtrnTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQS 748
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1291 TIMELQQRIQESAKQ---IEAKDNKITELLNDVERLKQALNGLSQLTYSSggpTKRQSQLVDTLQQRVRDLQQQLADA-- 1365
Cdd:pfam15921 749 KIQFLEEAMTNANKEkhfLKEEKNKLSQELSTVATEKNKMAGELEVLRSQ---ERRLKEKVANMEVALDKASLQFAECqd 825
|
810
....*....|....*...
gi 564364065 1366 --DRQHQEVIAIYRTHLL 1381
Cdd:pfam15921 826 iiQRQEQESVRLKLQHTL 843
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
892-1326 |
2.75e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 2.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 892 TSQEFSKLREENEVLRRNLENVQN----QMKADYVSLEEHSRKMNMANQsLKEAQDAHTALLADYRQGQEEIVTLHAEIK 967
Cdd:PTZ00121 1093 TEEAFGKAEEAKKTETGKAEEARKaeeaKKKAEDARKAEEARKAEDARK-AEEARKAEDAKRVEIARKAEDARKAEEARK 1171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 968 AQK-KELDTIQECIKLKYAPLSRMEECERKFKATEKALKEQLSEQTHKGQ--------VRDEEVKKG-----KQENERLR 1033
Cdd:PTZ00121 1172 AEDaKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEdakkaeavKKAEEAKKDaeeakKAEEERNN 1251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1034 KDLAALQKELKDRNVLVEEAREAERAlsRKTEELgKQLKELSQKYSDVKSEREKLVEEKAKQTSEILAAQNLLQKQPVPL 1113
Cdd:PTZ00121 1252 EEIRKFEEARMAHFARRQAAIKAEEA--RKADEL-KKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1114 EQVEALKTSLN-----GTIEHLKEELRSKERCLEREQQAVSQLQQLLENQKSSS-------VTLADHLQLK--------- 1172
Cdd:PTZ00121 1329 KKADAAKKKAEeakkaAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAakkkaeeKKKADEAKKKaeedkkkad 1408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1173 EALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLETREVVDMSKYKATkndlETQISNLNDKLASLNRK 1252
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAE----EAKKADEAKKKAEEAKK 1484
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564364065 1253 YDQVCEEKVSAKDEKEllHLNIEQEIRDQKERCDKSLTTIMELQQRIQESAKQIE----AKDNKITELLNDVERLKQA 1326
Cdd:PTZ00121 1485 ADEAKKKAEEAKKKAD--EAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADeakkAEEKKKADELKKAEELKKA 1560
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
877-1363 |
2.81e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.81 E-value: 2.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 877 KTNRALLDSKKRL--DDTSQEFSKLREENEVLRRNLENVQNQMKADYVSLEEHSRKMNMANQSLKEAQdahtaLLADYRQ 954
Cdd:TIGR00618 193 HGKAELLTLRSQLltLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQ-----LLKQLRA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 955 GQEEIVTLHAEIKAQKKELDtiQECIKLKYAPLS-RMEECERKFKATEKALKEQLSEQTHKGQVRDEEVKK--GKQENER 1031
Cdd:TIGR00618 268 RIEELRAQEAVLEETQERIN--RARKAAPLAAHIkAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQqsSIEEQRR 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1032 LRKDLAALQKELKDRN---VLVEEAREAERALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEiLAAQNLLQK 1108
Cdd:TIGR00618 346 LLQTLHSQEIHIRDAHevaTSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTR-TSAFRDLQG 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1109 QPVPLEQVEALktslngtiehlkeelrskerclerEQQAVSQLQQLLENQKSSsvtladhLQLKEALEKEvgiMKASLRE 1188
Cdd:TIGR00618 425 QLAHAKKQQEL------------------------QQRYAELCAAAITCTAQC-------EKLEKIHLQE---SAQSLKE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1189 KEEESQKK---TKEVSKLQTEVQNTKQALKNLETREVVDMSKYKATKNDLETQISNLNDKLASLNR-KYDQVCEEKVSAK 1264
Cdd:TIGR00618 471 REQQLQTKeqiHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTyAQLETSEEDVYHQ 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1265 DEKELLHLnieQEIRDQKERCDKSLTTIMELQQRIQESAKQIEAKDNKITELLNDVERLKQALNGLSQLTYSSGGPTKRQ 1344
Cdd:TIGR00618 551 LTSERKQR---ASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDL 627
|
490
....*....|....*....
gi 564364065 1345 SQLVDTLQQRVRDLQQQLA 1363
Cdd:TIGR00618 628 QDVRLHLQQCSQELALKLT 646
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
947-1147 |
3.01e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 3.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 947 ALLADYRQGQEEIVTLHAEIKAQKKELDTIQEcIKLKYAPLSRMEECERKFKATEKALkEQLseqthkgqvrdeevkkgK 1026
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQE-RREALQRLAEYSWDEIDVASAEREI-AEL-----------------E 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1027 QENERLRK---DLAALQKELKDRNVLVEEAREAERALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEILAAQ 1103
Cdd:COG4913 675 AELERLDAssdDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEER 754
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 564364065 1104 NLLQKQPvplEQVEALKTSLNGTIEHLKEELRSKERCLEREQQA 1147
Cdd:COG4913 755 FAAALGD---AVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| Ank_2 |
pfam12796 |
Ankyrin repeats (3 copies); |
40-100 |
5.02e-05 |
|
Ankyrin repeats (3 copies);
Pssm-ID: 463710 [Multi-domain] Cd Length: 91 Bit Score: 43.18 E-value: 5.02e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564364065 40 LMKAAERGDVEKVSSILAKKGVhpgKLDVEGRSAFHVVAAKGNLECLNAILTHGIDVATRD 100
Cdd:pfam12796 34 LHLAAKNGHLEIVKLLLEHADV---NLKDNGRTALHYAARSGHLEIVKLLLEKGADINVKD 91
|
|
| TRPV5-6 |
cd22192 |
Transient Receptor Potential channel, Vanilloid subfamily (TRPV), types 5 and 6; TRPV5 and ... |
107-235 |
5.16e-05 |
|
Transient Receptor Potential channel, Vanilloid subfamily (TRPV), types 5 and 6; TRPV5 and TRPV6 (TRPV5/6) are two homologous members within the vanilloid subfamily of the transient receptor potential (TRP) family. TRPV5 and TRPV6 show only 30-40% homology with other members of the TRP family and have unique properties that differentiates them from other TRP channels. They mediate calcium uptake in epithelia and their expression is dramatically increased in numerous types of cancer. The structure of TRPV5/6 shows the typical topology features of all TRP family members, such as six transmembrane regions, a short hydrophobic stretch between transmembrane segments 5 and 6, which is predicted to form the Ca2+ pore, and large intracellular N- and C-terminal domains. The N-terminal domain of TRPV5/6 contains three ankyrin repeats. This structural element is present in several proteins and plays a role in protein-protein interactions. The N- and C-terminal tails of TRPV5/6 each contain an internal PDZ motif which can function as part of a molecular scaffold via interaction with PDZ-domain containing proteins. A major difference between the properties of TRPV5 and TRPV6 is in their tissue distribution: TRPV5 is predominantly expressed in the distal convoluted tubules (DCT) and connecting tubules (CNT) of the kidney, with limited expression in extrarenal tissues. In contrast, TRPV6 has a broader expression pattern such as expression in the intestine, kidney, placenta, epididymis, exocrine tissues, and a few other tissues.
Pssm-ID: 411976 [Multi-domain] Cd Length: 609 Bit Score: 47.70 E-value: 5.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 107 LHLAAKYGHALCLQKLLQYNcpteHVDLQ-----GRTALHDAAMADCPSSIQLLCDhgasvNAKDI----------DGRT 171
Cdd:cd22192 21 LLLAAKENDVQAIKKLLKCP----SCDLFqrgalGETALHVAALYDNLEAAVVLME-----AAPELvnepmtsdlyQGET 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564364065 172 PLVLATQMCRPTICQLLIDRGADVNSRD------KQNRTALMLGCEY--------GCRDAVEVLVRNGADLTLLDALG 235
Cdd:cd22192 92 ALHIAVVNQNLNLVRELIARGADVVSPRatgtffRPGPKNLIYYGEHplsfaacvGNEEIVRLLIEHGADIRAQDSLG 169
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1063-1268 |
6.48e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 6.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1063 KTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEILAAQNLLQKQPVPLEQVEALKTSLNGTIEHLKEELRSKERCLE 1142
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1143 REQQAVSQLQQLLenqksSSVTLADHLQlkealekevgimKASLREKEEESQKKT-KEVSKLQTEVQNTKQALKNLETRE 1221
Cdd:COG3883 97 RSGGSVSYLDVLL-----GSESFSDFLD------------RLSALSKIADADADLlEELKADKAELEAKKAELEAKLAEL 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 564364065 1222 VVDMSKYKATKNDLETQISNLNDKLASLNRKYDQVCEEKVSAKDEKE 1268
Cdd:COG3883 160 EALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELA 206
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
795-1372 |
6.99e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.53 E-value: 6.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 795 VSRLEAVFVAPEKHEKELMGLKSNIAELKMQLCELNKKCGEGQEKIRALMSENTSLKKTLSSQYV-PAKTHEEVKASLSS 873
Cdd:pfam12128 243 FTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNgELSAADAAVAKDRS 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 874 TLEktnrALLDSKKRLDDTSQEFSKLREENEVLRRN-LENVQNQMKADYVSLEEHSRKMNMANQSLKEAQDAHTALLADY 952
Cdd:pfam12128 323 ELE----ALEDQHGAFLDADIETAAADQEQLPSWQSeLENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDK 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 953 RQGQ-EEIVTLHAEIKAQKKELDtiQECIKLKYAPLSRMEECERKFKATEKALKEQL------SEQTHKGQVRDEEVKKG 1025
Cdd:pfam12128 399 LAKIrEARDRQLAVAEDDLQALE--SELREQLEAGKLEFNEEEYRLKSRLGELKLRLnqatatPELLLQLENFDERIERA 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1026 KQENERLRKDLAALQKELKDRNVLVEEAREAERALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKA---KQTSEILAA 1102
Cdd:pfam12128 477 REEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKEApdwEQSIGKVIS 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1103 QNLLQK---QPVPLEQVEALKTSLNGTIEHLK-----------EELRSKERCLEREQQAVSQLQQLLENQKSSSVTLADH 1168
Cdd:pfam12128 557 PELLHRtdlDPEVWDGSVGGELNLYGVKLDLKridvpewaaseEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEK 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1169 LQLKEALEkevgimKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLETREVVDMSK-YKATKNDLETQISNLNDKLA 1247
Cdd:pfam12128 637 ASREETFA------RTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAqLKQLDKKHQAWLEEQKEQKR 710
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1248 SLNRKYDQVCEEKVSAKD--------EKELLHLNIEQEIRDQKERCDKSLTTIMELQQRIQESAKQIEAKDNKITELLND 1319
Cdd:pfam12128 711 EARTEKQAYWQVVEGALDaqlallkaAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVR 790
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 564364065 1320 VERLKQALNGLsQLTYSSGGPtKRQSQLVDTlQQRVRDLQQQLAdadRQHQEV 1372
Cdd:pfam12128 791 RQEVLRYFDWY-QETWLQRRP-RLATQLSNI-ERAISELQQQLA---RLIADT 837
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1132-1388 |
7.23e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 7.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1132 EELRSKERCLEREQQAVSQLQQLLENQKSSSVTLADHLqlkEALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTK 1211
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL---AALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1212 QALKNLETREVVDMSKYkatkndletQISNLNDKLASLnrkydqvceekVSAKDEKELLHL--NIEQEIRDQKERCDKSL 1289
Cdd:COG4942 97 AELEAQKEELAELLRAL---------YRLGRQPPLALL-----------LSPEDFLDAVRRlqYLKYLAPARREQAEELR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1290 TTIMELQQRIQESAKQIEAKDNKITELLNDVERLKQALNGLSQLTYSSGGPTKRQSQLVDTLQQRVRDLQQQLADADRQH 1369
Cdd:COG4942 157 ADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
250
....*....|....*....
gi 564364065 1370 QEVIAIYRTHLLSAAQGHM 1388
Cdd:COG4942 237 AAAAERTPAAGFAALKGKL 255
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
891-1307 |
7.63e-05 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 47.14 E-value: 7.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 891 DTSQEFSKLREE-NEVLRRNLENVQNQMkadyVSLEEHSRKMNM--ANQSLKEAQDAHTALLADYRQGQEEIvtlhAEIK 967
Cdd:PRK04778 61 QSEEKFEEWRQKwDEIVTNSLPDIEEQL----FEAEELNDKFRFrkAKHEINEIESLLDLIEEDIEQILEEL----QELL 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 968 AQKKELDTiqeciklkyaplsRMEECERKFKAtekaLKEQLSEQTHK-GQVRDEevkkgkqenerLRKDLAALQKELKDR 1046
Cdd:PRK04778 133 ESEEKNRE-------------EVEQLKDLYRE----LRKSLLANRFSfGPALDE-----------LEKQLENLEEEFSQF 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1047 NVLVE-----EAREAERALSRKTEELGKQLKELSQKYSDVKSErekLVEekakQTSEILAAQNLLQKQPVPLEQVEalkt 1121
Cdd:PRK04778 185 VELTEsgdyvEAREILDQLEEELAALEQIMEEIPELLKELQTE---LPD----QLQELKAGYRELVEEGYHLDHLD---- 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1122 sLNGTIEHLKEELrskerclereQQAVSQLQQL-LENQKSSSVTLADHL-QLKEALEKEVgimkaslrEKEEESQKKTKE 1199
Cdd:PRK04778 254 -IEKEIQDLKEQI----------DENLALLEELdLDEAEEKNEEIQERIdQLYDILEREV--------KARKYVEKNSDT 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1200 VSKLQTEVQNTKQALKnLETREVvdMSKYKATKNDLETQiSNLNDKLASLNRKYDQVCEEKvsakDEKELLHlnieQEIR 1279
Cdd:PRK04778 315 LPDFLEHAKEQNKELK-EEIDRV--KQSYTLNESELESV-RQLEKQLESLEKQYDEITERI----AEQEIAY----SELQ 382
|
410 420
....*....|....*....|....*...
gi 564364065 1280 DQKERCDKSLTTIMELQQRIQESAKQIE 1307
Cdd:PRK04778 383 EELEEILKQLEEIEKEQEKLSEMLQGLR 410
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1097-1249 |
7.72e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 7.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1097 SEILAAQNLLQKQPVPLEQVEALKTSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLLENQKSSSVTLADHLQLkEALE 1176
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEY-EALQ 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564364065 1177 KEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLETREVVDMSKYKATKNDLETQISNLNDKLASL 1249
Cdd:COG1579 96 KEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL 168
|
|
| Ank_4 |
pfam13637 |
Ankyrin repeats (many copies); |
103-155 |
7.77e-05 |
|
Ankyrin repeats (many copies);
Pssm-ID: 372654 [Multi-domain] Cd Length: 54 Bit Score: 41.49 E-value: 7.77e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 564364065 103 GRNALHLAAKYGHALCLQKLLQYNCPTEHVDLQGRTALHDAAMADCPSSIQLL 155
Cdd:pfam13637 1 ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLL 53
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
533-742 |
9.30e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 9.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 533 AATGSHRVIEELREQLKDMKGKYEGASAEVGKLRNQIKQSEMLVEGFKRDESRLVEENKRLQKECSTCEIDRERRGRRVT 612
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 613 ELEGQLKELGAKLALSVPTETFESMKSSL-----SNDISEKAKRLAEVGRDYESSQGEIRQLKRDLESVRAQHIRPE--- 684
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPLalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEaer 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564364065 685 --------EHEQLRSRLEQKSGELGKKVTELTLKNQTLQKEVEKLYADNKLLNQQVHSLTVEMKTR 742
Cdd:COG4942 174 aeleallaELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
861-1179 |
1.23e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.87 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 861 AKTHEEVKASLSSTLEKTNRALLDSKKRLDDTSQEFSKL--REE---------NEVLRRNLENVQNQMKAD-YVS-LEEH 927
Cdd:COG3096 280 RRELSERALELRRELFGARRQLAEEQYRLVEMARELEELsaRESdleqdyqaaSDHLNLVQTALRQQEKIErYQEdLEEL 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 928 SRKMNMANQSLKEAQDAHTAL-----------------LADYRQGQEEIVTLHAEIKAQKKELDTIQECIKLKYAPLSRM 990
Cdd:COG3096 360 TERLEEQEEVVEEAAEQLAEAearleaaeeevdslksqLADYQQALDVQQTRAIQYQQAVQALEKARALCGLPDLTPENA 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 991 EECERKFKATEKALKEQLSEQTHKGQVRD----------EEVKKGKQENER---------LRKDLAALQKELKDRNVLVE 1051
Cdd:COG3096 440 EDYLAAFRAKEQQATEEVLELEQKLSVADaarrqfekayELVCKIAGEVERsqawqtareLLRRYRSQQALAQRLQQLRA 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1052 EAREAERALSRKtEELGKQLKELSQKYS----------DVKSEREKLVEEKAKQTSEILAAQNLLQKQpvpLEQVEALKT 1121
Cdd:COG3096 520 QLAELEQRLRQQ-QNAERLLEEFCQRIGqqldaaeeleELLAELEAQLEELEEQAAEAVEQRSELRQQ---LEQLRARIK 595
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564364065 1122 SL----------NGTIEHLKEELrskERCLEREQQAVSQLQQLLENQKSSSVTLADHLQLKEALEKEV 1179
Cdd:COG3096 596 ELaarapawlaaQDALERLREQS---GEALADSQEVTAAMQQLLEREREATVERDELAARKQALESQI 660
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
495-1377 |
1.38e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.71 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 495 KQLEDALKDVQKRMYESEGKVKQMQThfLALKEHLTNEAATGSHRVIEELREQLKDMKGKYEGASAEvgkLRNQIKQSEM 574
Cdd:pfam01576 155 KLLEERISEFTSNLAEEEEKAKSLSK--LKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTD---LQEQIAELQA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 575 LVEGFKRDESRLVEENKRLQKECSTCEIDRERRGRRVTELEGQLKELGAKLALS-VPTETFESMKSSLSNDIsEKAKRLA 653
Cdd:pfam01576 230 QIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESErAARNKAEKQRRDLGEEL-EALKTEL 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 654 EVGRDYESSQGEIR--------QLKRDLESVRAQHirPEEHEQLRSRLEQKSGELGKKVTELTLKNQTLQKEVEKLYADN 725
Cdd:pfam01576 309 EDTLDTTAAQQELRskreqevtELKKALEEETRSH--EAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESEN 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 726 KllnqqvhSLTVEMKTRYVPLRVSEEMKKAHDVNVEDLNKKLSDATQRYAEKKLEAERLLAENDKLTKNVSRLEAVFVap 805
Cdd:pfam01576 387 A-------ELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNI-- 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 806 eKHEKELMGLKSNIAELKMQLCELNKKCGEGQEKIRALMSENTSLKKTLSSQyvpakthEEVKASLSSTLEKTNRALLDS 885
Cdd:pfam01576 458 -KLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEE-------EEAKRNVERQLSTLQAQLSDM 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 886 KKRLDDTSQEFSKLREENEVLRRNLENVQNQMK---ADYVSLEEHSRKMNMANQSLKEAQDAHTALLADYRQGQEEIVTL 962
Cdd:pfam01576 530 KKKLEEDAGTLEALEEGKKRLQRELEALTQQLEekaAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQM 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 963 HAEIKAqkkeldtiqecIKLKYAPLSRMEECERKFKATeKALkeQLSEQTHKGQVRDEEVKKgkqENERLRKDLAALQKE 1042
Cdd:pfam01576 610 LAEEKA-----------ISARYAEERDRAEAEAREKET-RAL--SLARALEEALEAKEELER---TNKQLRAEMEDLVSS 672
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1043 LKDRNVLVEEAREAERALSRKTEELGKQLKELS---QKYSDVKSEREKLVEEKAKQTSEILAAQNllqkqpvplEQVEAL 1119
Cdd:pfam01576 673 KDDVGKNVHELERSKRALEQQVEEMKTQLEELEdelQATEDAKLRLEVNMQALKAQFERDLQARD---------EQGEEK 743
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1120 KTSLNGTIEHLKEELRSKERclEREQQAVSQLQQLLENQKSSSVTLADHLQLKEA---LEKEVGIMKASLREKEE----- 1191
Cdd:pfam01576 744 RRQLVKQVRELEAELEDERK--QRAQAVAAKKKLELDLKELEAQIDAANKGREEAvkqLKKLQAQMKDLQRELEEarasr 821
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1192 --------ESQKKTK----EVSKLQTEVQNTKQALKNLETR------EVVDMSKYKAT----KNDLETQISNLNDKLASL 1249
Cdd:pfam01576 822 deilaqskESEKKLKnleaELLQLQEDLAASERARRQAQQErdeladEIASGASGKSAlqdeKRRLEARIAQLEEELEEE 901
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1250 ----------NRKYDQVCEEkVSAKDEKELLHLNIEQEIRDQKERCDKSLTTIM-ELQQRIQESAKQ----IEAKDNKIT 1314
Cdd:pfam01576 902 qsntellndrLRKSTLQVEQ-LTTELAAERSTSQKSESARQQLERQNKELKAKLqEMEGTVKSKFKSsiaaLEAKIAQLE 980
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564364065 1315 ELLNDVERLKQALNGLSQLTYSSGGPT-------KRQSQL----VDTLQQRVRDLQQQLADADRQHQEVIAIYR 1377
Cdd:pfam01576 981 EQLEQESRERQAANKLVRRTEKKLKEVllqvedeRRHADQykdqAEKGNSRMKQLKRQLEEAEEEASRANAARR 1054
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
953-1270 |
1.47e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.61 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 953 RQGQEEIVTLHAEI---------KAQKKELDTIQECIKLKYAplSRMEECERKFKATEKALKE--QLSEQTHKGQVRDEE 1021
Cdd:COG5022 833 RETEEVEFSLKAEVliqkfgrslKAKKRFSLLKKETIYLQSA--QRVELAERQLQELKIDVKSisSLKLVNLELESEIIE 910
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1022 VKKGKQENERLR-KDLAALQKELKD--RNVLVEEAREAERALSRKTEEL---GKQLKELSQKYSDVKSEREKLVEEKAKQ 1095
Cdd:COG5022 911 LKKSLSSDLIENlEFKTELIARLKKllNNIDLEEGPSIEYVKLPELNKLhevESKLKETSEEYEDLLKKSTILVREGNKA 990
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1096 TSEILAAQNLLQKQpvpLEQVEALKTSlngtiehlKEELRSKERCLEREQQAVSQ-------LQQLLENQKSSSVTLADH 1168
Cdd:COG5022 991 NSELKNFKKELAEL---SKQYGALQES--------TKQLKELPVEVAELQSASKIissesteLSILKPLQKLKGLLLLEN 1059
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1169 LQLKEALeKEVGIMK-ASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLET-REVVDMSKYKATKNDLETQISnlndkl 1246
Cdd:COG5022 1060 NQLQARY-KALKLRReNSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKpANVLQFIVAQMIKLNLLQEIS------ 1132
|
330 340
....*....|....*....|....
gi 564364065 1247 aSLNRKYDQVCEEKVSAKDEKELL 1270
Cdd:COG5022 1133 -KFLSQLVNTLEPVFQKLSVLQLE 1155
|
|
| Ank |
pfam00023 |
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the ... |
168-200 |
2.06e-04 |
|
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity.
Pssm-ID: 459634 [Multi-domain] Cd Length: 34 Bit Score: 39.97 E-value: 2.06e-04
10 20 30
....*....|....*....|....*....|....
gi 564364065 168 DGRTPLVLATQMC-RPTICQLLIDRGADVNSRDK 200
Cdd:pfam00023 1 DGNTPLHLAAGRRgNLEIVKLLLSKGADVNARDK 34
|
|
| Ank_4 |
pfam13637 |
Ankyrin repeats (many copies); |
36-86 |
2.20e-04 |
|
Ankyrin repeats (many copies);
Pssm-ID: 372654 [Multi-domain] Cd Length: 54 Bit Score: 40.34 E-value: 2.20e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 564364065 36 YDDRLMKAAERGDVEKVSSILaKKGVHPGKLDVEGRSAFHVVAAKGNLECL 86
Cdd:pfam13637 1 ELTALHAAAASGHLELLRLLL-EKGADINAVDGNGETALHFAASNGNVEVL 50
|
|
| Ank_5 |
pfam13857 |
Ankyrin repeats (many copies); |
89-141 |
2.39e-04 |
|
Ankyrin repeats (many copies);
Pssm-ID: 433530 [Multi-domain] Cd Length: 56 Bit Score: 40.41 E-value: 2.39e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 564364065 89 ILTHG-IDVATRDSAGRNALHLAAKYGHALCLQKLLQYNCPTEHVDLQGRTALH 141
Cdd:pfam13857 1 LLEHGpIDLNRLDGEGYTPLHVAAKYGALEIVRVLLAYGVDLNLKDEEGLTALD 54
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
859-1368 |
2.56e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 2.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 859 VPAKTHEEVKASLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLENvqnqmkADYVSLEEHSRKMNMANQSL 938
Cdd:COG4913 281 LRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRG------NGGDRLEQLEREIERLEREL 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 939 KEAQDAHTALladyrqgQEEIVTLHAEIKAQKKELDTIQECIklkyaplsrmeeceRKFKATEKALKEQLSEQTHKgqvR 1018
Cdd:COG4913 355 EERERRRARL-------EALLAALGLPLPASAEEFAALRAEA--------------AALLEALEEELEALEEALAE---A 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1019 DEEVKKGKQENERLRKDLAALQKelkdRNVL----VEEAREA-ERALSRKTEELgKQLKELSQkysdVKSEREK------ 1087
Cdd:COG4913 411 EAALRDLRRELRELEAEIASLER----RKSNiparLLALRDAlAEALGLDEAEL-PFVGELIE----VRPEEERwrgaie 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1088 ----------LVEEK-AKQTSEILAAQNL--------LQKQPVPLEQVEALKTSLNGTIE--------HLKEELRSKE-- 1138
Cdd:COG4913 482 rvlggfaltlLVPPEhYAAALRWVNRLHLrgrlvyerVRTGLPDPERPRLDPDSLAGKLDfkphpfraWLEAELGRRFdy 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1139 RC------LEREQQAVSQLQQLLENQ-----------KSSSVTLADHLQLKEALEKEVgimkASLREKEEESQKKTKEVS 1201
Cdd:COG4913 562 VCvdspeeLRRHPRAITRAGQVKGNGtrhekddrrriRSRYVLGFDNRAKLAALEAEL----AELEEELAEAEERLEALE 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1202 KLQTEVQNTKQALKNLETR--EVVDMSKYKATKNDLETQISNL---NDKLASLNRKYDQVCEEKVSAKDEKEllhlnieq 1276
Cdd:COG4913 638 AELDALQERREALQRLAEYswDEIDVASAEREIAELEAELERLdasSDDLAALEEQLEELEAELEELEEELD-------- 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1277 EIRDQKERCDKSLTTIMELQQRIQESAKQIEAKDNKITELLNDvERLKQALnglsqltyssggPTKRQSQLVDTLQQRVR 1356
Cdd:COG4913 710 ELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLE-ERFAAAL------------GDAVERELRENLEERID 776
|
570
....*....|..
gi 564364065 1357 DLQQQLADADRQ 1368
Cdd:COG4913 777 ALRARLNRAEEE 788
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
725-981 |
2.72e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.39 E-value: 2.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 725 NKLLNQQVHSLTVEMKTRYVPLRVSEEMKKAHDVNVEDLNKKLSDATQRYAEK----KLEAERLLAENDKLTknvSRLEA 800
Cdd:PHA02562 169 DKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKydelVEEAKTIKAEIEELT---DELLN 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 801 VFVAPEKHEKELMGLKSNIAELKMQLCELNKKcgegqekirALMSENTSLKKTLSSQYvpaKTHEEVKASLSSTLEKTNR 880
Cdd:PHA02562 246 LVMDIEDPSAALNKLNTAAAKIKSKIEQFQKV---------IKMYEKGGVCPTCTQQI---SEGPDRITKIKDKLKELQH 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 881 ALLDSKKRLDDTSQEFSKLREENEVLrRNLENVQNQMKADYVSLEEHSRKMNMANQSLKEAQDAHTALLADYRQGQEEIV 960
Cdd:PHA02562 314 SLEKLDTAIDELEEIMDEFNEQSKKL-LELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIV 392
|
250 260
....*....|....*....|.
gi 564364065 961 TLHAEIKAQKKELDTIQECIK 981
Cdd:PHA02562 393 KTKSELVKEKYHRGIVTDLLK 413
|
|
| PTZ00322 |
PTZ00322 |
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional |
108-188 |
2.72e-04 |
|
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Pssm-ID: 140343 [Multi-domain] Cd Length: 664 Bit Score: 45.27 E-value: 2.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 108 HLAAKyGHALCLQKLLQYNCPTEHVDLQGRTALHDAAMADCPSSIQLLCDHGASVNAKDIDGRTPLVLATQMCRPTICQL 187
Cdd:PTZ00322 88 QLAAS-GDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQL 166
|
.
gi 564364065 188 L 188
Cdd:PTZ00322 167 L 167
|
|
| Ank_5 |
pfam13857 |
Ankyrin repeats (many copies); |
122-176 |
2.91e-04 |
|
Ankyrin repeats (many copies);
Pssm-ID: 433530 [Multi-domain] Cd Length: 56 Bit Score: 40.02 E-value: 2.91e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 564364065 122 LLQY-NCPTEHVDLQGRTALHDAAMADCPSSIQLLCDHGASVNAKDIDGRTPLVLA 176
Cdd:pfam13857 1 LLEHgPIDLNRLDGEGYTPLHVAAKYGALEIVRVLLAYGVDLNLKDEEGLTALDLA 56
|
|
| Ank_5 |
pfam13857 |
Ankyrin repeats (many copies); |
55-110 |
3.00e-04 |
|
Ankyrin repeats (many copies);
Pssm-ID: 433530 [Multi-domain] Cd Length: 56 Bit Score: 40.02 E-value: 3.00e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 564364065 55 ILAKKGVHPGKLDVEGRSAFHVVAAKGNLECLNAILTHGIDVATRDSAGRNALHLA 110
Cdd:pfam13857 1 LLEHGPIDLNRLDGEGYTPLHVAAKYGALEIVRVLLAYGVDLNLKDEEGLTALDLA 56
|
|
| Ank_5 |
pfam13857 |
Ankyrin repeats (many copies); |
188-235 |
3.08e-04 |
|
Ankyrin repeats (many copies);
Pssm-ID: 433530 [Multi-domain] Cd Length: 56 Bit Score: 40.02 E-value: 3.08e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 564364065 188 LIDRG-ADVNSRDKQNRTALMLGCEYGCRDAVEVLVRNGADLTLLDALG 235
Cdd:pfam13857 1 LLEHGpIDLNRLDGEGYTPLHVAAKYGALEIVRVLLAYGVDLNLKDEEG 49
|
|
| PTZ00322 |
PTZ00322 |
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional |
186-264 |
3.23e-04 |
|
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Pssm-ID: 140343 [Multi-domain] Cd Length: 664 Bit Score: 45.27 E-value: 3.23e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564364065 186 QLLIDRGADVNSRDKQNRTALMLGCEYGCRDAVEVLVRNGADLTLLDALGHDSSYYARIGDNLDILNLLKTASESTSKG 264
Cdd:PTZ00322 99 RILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFEL 177
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
998-1213 |
3.26e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 3.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 998 KATEKALKEQLSEQTHKGQVRDEEVKKGKQENERLRKDLAALQKELKdrnvlveearEAERALSRKTEELGKQLKELsQK 1077
Cdd:COG3883 29 QAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIA----------EAEAEIEERREELGERARAL-YR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1078 YSDVKSEREKLVEekAKQTSEILAAQNLLQK----QPVPLEQVEALKTSLngtiEHLKEELRSKERCLEREQQAVSQLQQ 1153
Cdd:COG3883 98 SGGSVSYLDVLLG--SESFSDFLDRLSALSKiadaDADLLEELKADKAEL----EAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1154 LLENQKSSSVTLADHLQLKEALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQA 1213
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAA 231
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
444-1139 |
3.73e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.21 E-value: 3.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 444 LKKELEA-MRTFCDSAKQDRLKLQNELAHKVAECKALALECERVkedsDEQIKQLEDAlkDVQKRMYESEgKVKQMQTHF 522
Cdd:pfam12128 284 TSAELNQlLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEAL----EDQHGAFLDA--DIETAAADQE-QLPSWQSEL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 523 LALKEHLtnEAATGSHRVIEELREQLKDMKGKYEGASAEVGKLRnQIKQSEmlvegfKRDESRLVEENKrLQKECSTCEI 602
Cdd:pfam12128 357 ENLEERL--KALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDK-LAKIRE------ARDRQLAVAEDD-LQALESELRE 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 603 DRERRGRRVTELEGQLKELGAKLALSVPTETFESmksSLSNDISEKAKRLAEVGRDYESSQGEIRQLKRDLESVRAQHIR 682
Cdd:pfam12128 427 QLEAGKLEFNEEEYRLKSRLGELKLRLNQATATP---ELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQ 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 683 PEEHEQLRS-RLEQKSGELGKKVTELTLKNQTLQKEVEKLYADNKLLNQQVHSLTVEMKTRYVPLRVSEEMKKahDVNVE 761
Cdd:pfam12128 504 ASEALRQASrRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGG--ELNLY 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 762 DLNKKLsdatqryaeKKLEAERLLAENDKLTKNVSRLEavfvapekheKELMGLKSNIAELKMQLCELNKKCGEGQekiR 841
Cdd:pfam12128 582 GVKLDL---------KRIDVPEWAASEEELRERLDKAE----------EALQSAREKQAAAEEQLVQANGELEKAS---R 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 842 ALMSENTSLKKTLSSQYVPAKTHEEVKaslsstlEKTNRALldsKKRLDDTSQEFSKLREENEVLRRNLENVQNQMKADy 921
Cdd:pfam12128 640 EETFARTALKNARLDLRRLFDEKQSEK-------DKKNKAL---AERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQ- 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 922 vsLEEHSRKMNMANQSLKEAQDAHTALLadyrqgQEEIVTLHAEIKAQKKELDT------------------IQECIKLK 983
Cdd:pfam12128 709 --KREARTEKQAYWQVVEGALDAQLALL------KAAIAARRSGAKAELKALETwykrdlaslgvdpdviakLKREIRTL 780
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 984 YAPLSRMEECERKFKATEKALKEQLSEQTHKGQVRDEEVKkgkQENERLRKDLAALQKELKDRNVLVEEAREAERalsrk 1063
Cdd:pfam12128 781 ERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIE---RAISELQQQLARLIADTKLRRAKLEMERKASE----- 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1064 teelgKQLKELSQKYSDVKSEREKLVEEKAKQTSEilAAQNLLQKQPVPLEQV----EALKTSLNGTIEHLKEELRSKER 1139
Cdd:pfam12128 853 -----KQQVRLSENLRGLRCEMSKLATLKEDANSE--QAQGSIGERLAQLEDLklkrDYLSESVKKYVEHFKNVIADHSG 925
|
|
| Ank |
pfam00023 |
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the ... |
135-166 |
4.14e-04 |
|
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity.
Pssm-ID: 459634 [Multi-domain] Cd Length: 34 Bit Score: 38.81 E-value: 4.14e-04
10 20 30
....*....|....*....|....*....|...
gi 564364065 135 QGRTALHDAA-MADCPSSIQLLCDHGASVNAKD 166
Cdd:pfam00023 1 DGNTPLHLAAgRRGNLEIVKLLLSKGADVNARD 33
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
988-1301 |
4.15e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.50 E-value: 4.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 988 SRMEECERkfkatekalkeQLSEQTHKGQVRDEEVKKGKQENERLRKDLAALQKELKDRnvlVEEAREAERALSRKTEEL 1067
Cdd:pfam07888 34 NRLEECLQ-----------ERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESR---VAELKEELRQSREKHEEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1068 GKQLKELSQKYSDVKSEREKLVEEKAKQTSEILaaqNLLQKQPVPLEQVEALKTSLngtiEHLKEELRSKERCLEREQQA 1147
Cdd:pfam07888 100 EEKYKELSASSEELSEEKDALLAQRAAHEARIR---ELEEDIKTLTQRVLERETEL----ERMKERAKKAGAQRKEEEAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1148 VSQLQQLLENQKSSSVTLADHLQLKEALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLETREVVDMSK 1227
Cdd:pfam07888 173 RKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERK 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1228 YKATKNDLETQISNLNDKLASLNRKYDQVC--------------EEKVSAKDEKELLHLNIEQEirdqKERCDKSLTTIM 1293
Cdd:pfam07888 253 VEGLGEELSSMAAQRDRTQAELHQARLQAAqltlqladaslalrEGRARWAQERETLQQSAEAD----KDRIEKLSAELQ 328
|
....*...
gi 564364065 1294 ELQQRIQE 1301
Cdd:pfam07888 329 RLEERLQE 336
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
884-1187 |
4.21e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 4.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 884 DSKKRLDDTSQEFSKLREenevLRRNLENVQNQMKAdyvsLEEhsrkmnmanqsLKEAQDAHTALLADYRQGQEEIVTLH 963
Cdd:COG4913 222 DTFEAADALVEHFDDLER----AHEALEDAREQIEL----LEP-----------IRELAERYAAARERLAELEYLRAALR 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 964 AEIKAQKKELdtIQECIKLKYAPLSRMEECERKFKATEKALKEQLSEqtHKGQVRDEevkkGKQENERLRKDLAALQKEL 1043
Cdd:COG4913 283 LWFAQRRLEL--LEAELEELRAELARLEAELERLEARLDALREELDE--LEAQIRGN----GGDRLEQLEREIERLEREL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1044 KDRnvlveeareaeralSRKTEELGKQLKELsqkysdvksereklvEEKAKQTSEILAAQnllqkqpvpLEQVEALKTSL 1123
Cdd:COG4913 355 EER--------------ERRRARLEALLAAL---------------GLPLPASAEEFAAL---------RAEAAALLEAL 396
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564364065 1124 NGTIEHLKEELRSKERCLEREQQAVSQLQQLLENQKSSSVTLADHL-QLKEALEKEVGIMKASLR 1187
Cdd:COG4913 397 EEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLlALRDALAEALGLDEAELP 461
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
1016-1346 |
4.54e-04 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 45.04 E-value: 4.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1016 QVRDEEVKKGKQEN-ERLRKDLAALQKELKdrnvLVEEAREAERALSRKT-EELGKQLKELsqKYSDVKsEREKLVEEKA 1093
Cdd:PTZ00108 987 LVRLDLYKKRKEYLlGKLERELARLSNKVR----FIKHVINGELVITNAKkKDLVKELKKL--GYVRFK-DIIKKKSEKI 1059
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1094 KQTSEILAAQNLLQKQPVPLEQVEALK----------TSLNGT-IEHLKEELRSKERclEREQqavsqlqqlLENQKSSS 1162
Cdd:PTZ00108 1060 TAEEEEGAEEDDEADDEDDEEELGAAVsydyllsmpiWSLTKEkVEKLNAELEKKEK--ELEK---------LKNTTPKD 1128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1163 VTLADHLQLKEALEKEVGIMKASLREKEEESQKKTKEVSKLQtevqntKQALKNLETREVVDMSKYKATKNDLETQISNL 1242
Cdd:PTZ00108 1129 MWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLR------KPKLKKKEKKKKKSSADKSKKASVVGNSKRVD 1202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1243 NDKLASLNRKYDQVCEEKVSAKDEKELlhLNIEQEIRDQKERCDKSLTTIMELQQRIQESAKQIEAKDNKITELLNDV-- 1320
Cdd:PTZ00108 1203 SDEKRKLDDKPDNKKSNSSGSDQEDDE--EQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVsa 1280
|
330 340 350
....*....|....*....|....*....|.
gi 564364065 1321 -----ERLKQALNGLSQLTYSSGGPTKRQSQ 1346
Cdd:PTZ00108 1281 vqyspPPPSKRPDGESNGGSKPSSPTKKKVK 1311
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1069-1228 |
4.66e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 4.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1069 KQLKELSQKYSDVKSEREKLVEEKAKQtsEILAAQNLLQKQpvpLEQVEALKTSLNGTIEHLKEELRSKERCLEREQQAV 1148
Cdd:PRK12704 31 AKIKEAEEEAKRILEEAKKEAEAIKKE--ALLEAKEEIHKL---RNEFEKELRERRNELQKLEKRLLQKEENLDRKLELL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1149 SQLQQLLENQKSSSvtladhlqlkEALEKEVGIMKASLREKEEESQKKTKEVSKLQTEvQNTKQALKNLETREVVDMSKY 1228
Cdd:PRK12704 106 EKREEELEKKEKEL----------EQKQQELEKKEEELEELIEEQLQELERISGLTAE-EAKEILLEKVEEEARHEAAVL 174
|
|
| PHA02874 |
PHA02874 |
ankyrin repeat protein; Provisional |
119-254 |
4.99e-04 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 165205 [Multi-domain] Cd Length: 434 Bit Score: 44.18 E-value: 4.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 119 LQKLLQY--NCPTEHVDlQGRTALHDAAMADCPSSIQLLCDHGASVNAKDIDGRTPLVLATQMCRPTICQLLIDRGAD-- 194
Cdd:PHA02874 17 IEKIIKNkgNCINISVD-ETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDts 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 195 ---------------------VNSRDKQNRTALMLGCEYGCRDAVEVLVRNGADLTLLDALGHDSSYYARIGDNLDILNL 253
Cdd:PHA02874 96 ilpipciekdmiktildcgidVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKL 175
|
.
gi 564364065 254 L 254
Cdd:PHA02874 176 L 176
|
|
| TRPV |
cd21882 |
Transient Receptor Potential channel, Vanilloid subfamily (TRPV); The vanilloid TRP subfamily ... |
81-202 |
5.24e-04 |
|
Transient Receptor Potential channel, Vanilloid subfamily (TRPV); The vanilloid TRP subfamily (TRPV), named after the vanilloid receptor 1 (TRPV1), consists of six members: four thermo-sensing channels (TRPV1, TRPV2, TRPV3, and TRPV4) and two Ca2+ selective channels (TRPV5 and TRPV6). The calcium-selective channels TRPV5 and TRPV6 can be heterotetramers and are important for general Ca2+ homeostasis. All four channels within the TRPV1-4 group show temperature-invoked currents when expressed in heterologous cell systems, ranging from activation at ~25C for TRPV4 to ~52C for TRPV2. The structure of TRPV shows the typical topology features of all Transient Receptor Potential (TRP) ion channel family members, such as six transmembrane regions, a short hydrophobic stretch between transmembrane segments 5 and 6 and large intracellular N- and C-terminal domains. The TRP family consists of membrane proteins that function as ion channels that communicate between the cell and its environment, by a vast array of physical or chemical stimuli, including radiation (in the form of temperature, infrared ,or light) and pressure (osmotic or mechanical). TRP channels are formed by a tetrameric complex of channel subunits. Based on sequence identity, the mammalian TRP channel family is classified into six subfamilies, with significant sequence similarity within the transmembrane domains, but very low similarity in their N- and C-terminal cytoplasmic regions. The six subfamilies are named based on their first member: TRPC (canonical), TRPV (vanilloid), TRPM (melastatin), TRPA (ankyrin), TRPML (mucolipin), and TRPP (polycystic).
Pssm-ID: 411975 [Multi-domain] Cd Length: 600 Bit Score: 44.49 E-value: 5.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 81 GNLECLNAILTHgiDVATRDSAGRNALHLAAKYGH-------ALCLQKLLQYNCPTEHVD-------LQGRTALHDAAMA 146
Cdd:cd21882 6 GLLECLRWYLTD--SAYQRGATGKTCLHKAALNLNdgvneaiMLLLEAAPDSGNPKELVNapctdefYQGQTALHIAIEN 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564364065 147 DCPSSIQLLCDHGASVNAKDID-------------GRTPLVLATQMCRPTICQLLIDRGADVNSRDKQN 202
Cdd:cd21882 84 RNLNLVRLLVENGADVSARATGrffrkspgnlfyfGELPLSLAACTNQEEIVRLLLENGAQPAALEAQD 152
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
677-1222 |
6.03e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 44.35 E-value: 6.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 677 RAQHIRPEEH-EQLRSRLEQKSGELGKKVTELTLKNQTLQKEVEKLYADNKLLNQQVHSLTVEMKTRYVPLRVSEEMKKA 755
Cdd:pfam05557 1 RAELIESKARlSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 756 HDVNVEDLNKKLSDATQRYAEKKleaERLLAENDKLTKNVSRLEAVFVAPEKHEKELMGLKSNIAELKMQLCELNKKCGE 835
Cdd:pfam05557 81 KKKYLEALNKKLNEKESQLADAR---EVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 836 GQEKIRALMSENTSLKKTLSSQYVPAKTHEEVKASLS-----STLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNL 910
Cdd:pfam05557 158 LEKQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSelariPELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 911 ENvQNQMKADYVSLEEHSRKMNMANQSLKEAQDAHTALLADYRQGQEEIVTLHAEIKAQKKELDTIQEciKLKYAPLSRM 990
Cdd:pfam05557 238 ER-EEKYREEAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSSLTS--SARQLEKARR 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 991 EECERKFKATEKALKEQLSEQTHKGQVRdeevkkgkqeneRLRKDLAALQKELKDRNVLVEE------AREAERALSRKT 1064
Cdd:pfam05557 315 ELEQELAQYLKKIEDLNKKLKRHKALVR------------RLQRRVLLLTKERDGYRAILESydkeltMSNYSPQLLERI 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1065 EELGKQLKELSQKYSDVKSEREKLVEEKAKQTS---------EILAAQNLLQKQPVPLEQVEALKTSLNgTIEHLKEELR 1135
Cdd:pfam05557 383 EEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQqaqtlerelQALRQQESLADPSYSKEEVDSLRRKLE-TLELERQRLR 461
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1136 SKERCLEREQqAVSQLQQLLENQKSSSVTLADHLQLK---------EALEKEVGIMKASLREKEEESQK----------- 1195
Cdd:pfam05557 462 EQKNELEMEL-ERRCLQGDYDPKKTKVLHLSMNPAAEayqqrknqlEKLQAEIERLKRLLKKLEDDLEQvlrlpettstm 540
|
570 580
....*....|....*....|....*..
gi 564364065 1196 KTKEVSKLQTEVQNTKqaLKNLETREV 1222
Cdd:pfam05557 541 NFKEVLDLRKELESAE--LKNQRLKEV 565
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
897-1108 |
6.07e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.23 E-value: 6.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 897 SKLREENE---VLRRNLENVQNQMKAdYVSLEEHSRKMNMANQSlkEAQDAHTALLADYRQGQEEIVTLHAEIKAQKKEL 973
Cdd:PHA02562 174 DKIRELNQqiqTLDMKIDHIQQQIKT-YNKNIEEQRKKNGENIA--RKQNKYDELVEEAKTIKAEIEELTDELLNLVMDI 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 974 DTIQECIK---LKYAPL-SRMEECERKFKATEK-----ALKEQLSEQthkgqvrDEEVKKGKQENERLRKDLAALQKELK 1044
Cdd:PHA02562 251 EDPSAALNklnTAAAKIkSKIEQFQKVIKMYEKggvcpTCTQQISEG-------PDRITKIKDKLKELQHSLEKLDTAID 323
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564364065 1045 DRNVLVEEAREAER---ALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEILAAQNLLQK 1108
Cdd:PHA02562 324 ELEEIMDEFNEQSKkllELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDK 390
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
818-1060 |
6.36e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.52 E-value: 6.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 818 NIAELKMQLCELNKKCGEGQEKIRALMSENTSLKKTLSSqyVPAKTHEEVK-ASLSSTLEKTNRALLDSKKRLDDTSQEF 896
Cdd:PRK11281 74 KIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDE--ETRETLSTLSlRQLESRLAQTLDQLQNAQNDLAEYNSQL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 897 SKLREEnevlrrnLENVQNQMKADYVSLEEhsrkmnmANQSLKEAQDAHTALLADYRQG-QEEIVTLHAEIKAQKKEL-- 973
Cdd:PRK11281 152 VSLQTQ-------PERAQAALYANSQRLQQ-------IRNLLKGGKVGGKALRPSQRVLlQAEQALLNAQNDLQRKSLeg 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 974 -DTIQECIKLKY----APLSRMEE---------CERKFKATEKALKEQLSEQTHKGQVRDEEVKKGKQENERLRKDL--- 1036
Cdd:PRK11281 218 nTQLQDLLQKQRdyltARIQRLEHqlqllqeaiNSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLlka 297
|
250 260
....*....|....*....|....*....
gi 564364065 1037 -----AALQKELKDRNVLvEEAREAERAL 1060
Cdd:PRK11281 298 teklnTLTQQNLRVKNWL-DRLTQSERNI 325
|
|
| CagA_N |
pfam18971 |
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial ... |
906-1235 |
6.82e-04 |
|
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial virulence determinant and critical for gastric carcinogenesis. X-ray crystallographic analysis of the N-terminal CagA fragment (residues 1-876) revealed that the region has a structure comprised of three discrete domains. Domain I constitutes a mobile CagA N terminus, while Domain II tethers CagA to the plasma membrane by interacting with membrane phosphatidylserine. Domain III interacts intramolecularly with the intrinsically disordered C-terminal region, and this interaction potentiates the pathogenic scaffold/hub function of CagA.
Pssm-ID: 408741 [Multi-domain] Cd Length: 876 Bit Score: 44.38 E-value: 6.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 906 LRRNLENvqnQMKADYVSLEEHSRKMNMANQSLKEAqdAHTALLADYRQGQEEIVTLHAEIKAQKKELdtiqeciklkya 985
Cdd:pfam18971 557 VRRNLEN---KLTAKGLSLQEANKLIKDFLSSNKEL--AGKALNFNKAVAEAKSTGNYDEVKKAQKDL------------ 619
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 986 plsrmEECERKFKATEKALKEQLSEQTHKGQVRDEEVKKGKQENERLrkdlAALQKEL-KDRNVL--VEEAREAERALSR 1062
Cdd:pfam18971 620 -----EKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIF----ALINKEAnRDARAIayTQNLKGIKRELSD 690
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1063 KTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEILAAQNLLQKQPVPLEQVEALKTSLNgtiehlkEELRSKERCLE 1142
Cdd:pfam18971 691 KLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNAALN-------EFKNGKNKDFS 763
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1143 REQQAVSQLQQLLE----NQKSSSVTlaDHLQLKEALEKEVGIMkaslrEKEEESQKKTKEVSKLQTevqnTKQALKNLE 1218
Cdd:pfam18971 764 KVTQAKSDLENSVKdviiNQKVTDKV--DNLNQAVSVAKAMGDF-----SRVEQVLADLKNFSKEQL----AQQAQKNED 832
|
330
....*....|....*..
gi 564364065 1219 TREVVDMSKYKATKNDL 1235
Cdd:pfam18971 833 FNTGKNSELYQSVKNSV 849
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
307-626 |
7.86e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 7.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 307 DLKEKLRKIQQEQRILldKVNGLQLQLNEEVMVADDLESEREKLKSLLAAKEKQHEESLRTIEALKNRFKyfesdhpgpg 386
Cdd:COG1196 217 ELKEELKELEAELLLL--KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE---------- 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 387 syssnrkedmlHKQGQMYTADSQctspgvppHMQSRSMLRPLELslpsqtsysENEILKKELEAMRTFCDSAKQDRLKLQ 466
Cdd:COG1196 285 -----------EAQAEEYELLAE--------LARLEQDIARLEE---------RRRELEERLEELEEELAELEEELEELE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 467 NELAHKVAECKALALEcervKEDSDEQIKQLEDALKDVQKRMYESEGKVKQMQTHFLALKEHLTNEAATgshrvIEELRE 546
Cdd:COG1196 337 EELEELEEELEEAEEE----LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ-----LEELEE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 547 QLKDMKGKYEGASAEVGKLRNQIKQSEMLVEGFKRDESRLVEENKRLQKECSTCEIDRERRGRRVTELEGQLKELGAKLA 626
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
474-1252 |
7.94e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 7.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 474 AECKALALECERVKEDSDEQIKQLEDALKDVQKRMYESEGKVKQMQ-THFLALKEHLTNEAATGSHRVIEELREQLKdmk 552
Cdd:TIGR00618 194 GKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQqSHAYLTQKREAQEEQLKKQQLLKQLRARIE--- 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 553 gKYEGASAEVGKLRNQIKQSemlvegfkRDESRLVEENKRLQKecstCEIDRERRGRRVTELEGQLKELGAKLALSVPTE 632
Cdd:TIGR00618 271 -ELRAQEAVLEETQERINRA--------RKAAPLAAHIKAVTQ----IEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQ 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 633 TFESMKSSLSNDISEKAKRLAEVGRDYESSQGEIRQLKRDLESVRAQhirpeehEQLRSRLEQKSGELGKKvtelTLKNQ 712
Cdd:TIGR00618 338 SSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTL-------QQQKTTLTQKLQSLCKE----LDILQ 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 713 TLQKEVEKLYADNKLLNQQVhsltVEMKTRYVPLRVSEEMKKAHDVNVEDLNKKLSDATQRYAEKKLEAERLLAENDKLT 792
Cdd:TIGR00618 407 REQATIDTRTSAFRDLQGQL----AHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIH 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 793 KNVSRLEAVfvapekHEKELMglksniaELKMQLCELNKKCGEGQEKIRALMSENTSLKKTLSSQYVPAKTHEEVKASLS 872
Cdd:TIGR00618 483 LQETRKKAV------VLARLL-------ELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYH 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 873 STLEKTNRALLDSKK--RLDDTSQEFSKLREENEVLRRNLENVQNQMKADYVSLEEHSRKMNMANQSLKeaqdahtalla 950
Cdd:TIGR00618 550 QLTSERKQRASLKEQmqEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALL----------- 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 951 dyRQGQEEIVTLHAEIKAQKkeldtIQECIKLKYAPLSRMEECERKFKATEKALKEQLSEQTHKGQVRDEEvkkgkQENE 1030
Cdd:TIGR00618 619 --RKLQPEQDLQDVRLHLQQ-----CSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLAL-----QKMQ 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1031 RLRKDLAALQKELKDRNVLVEEAREAERALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEILAAQNLLQKQP 1110
Cdd:TIGR00618 687 SEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNN 766
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1111 VPLEQVEalktslngtiEHLKEELRSKERCLEREQQAVSQLQQLLENQKSSSVTLADHLQLKEALEKEvgimkaSLREKE 1190
Cdd:TIGR00618 767 NEEVTAA----------LQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCE------TLVQEE 830
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564364065 1191 EESQKKTKEVSKLQTEVqntKQALKNLEtrevvDMSKYKATKNDLETQISNLNDKLASLNRK 1252
Cdd:TIGR00618 831 EQFLSRLEEKSATLGEI---THQLLKYE-----ECSKQLAQLTQEQAKIIQLSDKLNGINQI 884
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
301-724 |
8.75e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.90 E-value: 8.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 301 LEMENEDLKEKLRKIQQEQRILLDKVNGLQLQLneevmvaDDLESEREKLKSLlaakEKQHEESLRTIEALKNRFKYFEs 380
Cdd:PRK03918 298 LSEFYEEYLDELREIEKRLSRLEEEINGIEERI-------KELEEKEERLEEL----KKKLKELEKRLEELEERHELYE- 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 381 dhpgpgsyssnrkeDMLHKQGQM--YTADSQCTSPGvpphmQSRSMLRPLElslpsqTSYSENEILKKELEAMRTFCDSA 458
Cdd:PRK03918 366 --------------EAKAKKEELerLKKRLTGLTPE-----KLEKELEELE------KAKEEIEEEISKITARIGELKKE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 459 KQDRLKLQNELAHKVAEC------------KALALECERVKEDSDEQIKQLEDALKDVQKRMYESEG---------KVKQ 517
Cdd:PRK03918 421 IKELKKAIEELKKAKGKCpvcgrelteehrKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKvlkkeseliKLKE 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 518 MQTHFLALKEHLTN---EAATGSHRVIEELREQLKDMKGKYEGASAEVGKLRNQIKQSEMLVEGFKRDESRLVEENKRLQ 594
Cdd:PRK03918 501 LAEQLKELEEKLKKynlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELE 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 595 KECSTCEIDRErrgRRVTELEGQLKE-LGAKLALSVPTETFESMKsSLSNDISEKAKRLAEVGRDYESSQGEIRQLKRDL 673
Cdd:PRK03918 581 ELGFESVEELE---ERLKELEPFYNEyLELKDAEKELEREEKELK-KLEEELDKAFEELAETEKRLEELRKELEELEKKY 656
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 564364065 674 EsvraqhirPEEHEQLRSRLEQKSGELGKKVTEL-TLKN--QTLQKEVEKLYAD 724
Cdd:PRK03918 657 S--------EEEYEELREEYLELSRELAGLRAELeELEKrrEEIKKTLEKLKEE 702
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
484-695 |
8.85e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 8.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 484 ERVKEDSDEQIKQLEDALKDVQKRMYESEGKVKQMQthflalKEHL---TNEAATGSHRVIEELREQLKDMKGKYEGASA 560
Cdd:COG3206 167 ELRREEARKALEFLEEQLPELRKELEEAEAALEEFR------QKNGlvdLSEEAKLLLQQLSELESQLAEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 561 EVGKLRNQIKQSEMLVEGFKRDE--SRLVEENKRLQKecstcEIDRERRG------------RRVTELEGQLKELGAKLA 626
Cdd:COG3206 241 RLAALRAQLGSGPDALPELLQSPviQQLRAQLAELEA-----ELAELSARytpnhpdvialrAQIAALRAQLQQEAQRIL 315
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564364065 627 LSVPTE--TFESMKSSLSNDISEKAKRLAEVGRDyessQGEIRQLKRDLESVRAQhirpeeHEQLRSRLEQ 695
Cdd:COG3206 316 ASLEAEleALQAREASLQAQLAQLEARLAELPEL----EAELRRLEREVEVAREL------YESLLQRLEE 376
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
689-916 |
9.00e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 9.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 689 LRSRLEQKSGELGKKVTELTLKNQTLQKEVEKlyADNKLlnqqvhsltVEMKTRYVPLRVSEEMKKAHDvNVEDLNKKLS 768
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEE--AEAAL---------EEFRQKNGLVDLSEEAKLLLQ-QLSELESQLA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 769 DATQRYAEKKLEAERLlaeNDKLTKNVSRLEAVFVAPEkhekeLMGLKSNIAELKMQLCELNKKCGEGQEKIRALMSENT 848
Cdd:COG3206 230 EARAELAEAEARLAAL---RAQLGSGPDALPELLQSPV-----IQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIA 301
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564364065 849 SLKKTLSSQyvPAKTHEEVKASLSStLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLENVQNQ 916
Cdd:COG3206 302 ALRAQLQQE--AQRILASLEAELEA-LQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVAREL 366
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
300-1042 |
9.41e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.88 E-value: 9.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 300 DLEMENEDLKEKLRKIQQEQRILLDKVNGLQLQLN--EEVMVADDLESEREKLKSLLAAKEKQHEESLRTIEALKNRFKY 377
Cdd:TIGR00606 323 DCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADrhQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIER 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 378 FESDHPGPGSYSSNRKEDMLHKQGQMYTADSQCTSPGVPPHMQSRSMLRPLE-----LSLPSQTSYSENEILKKELEAMR 452
Cdd:TIGR00606 403 QEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEelkfvIKELQQLEGSSDRILELDQELRK 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 453 TFCDSAKQDRLKLQNELAHKVAECKALALECERVKEDSDEQIKQLE---DALKDVQKRMYESEGKVKQMQTHFLALKEHL 529
Cdd:TIGR00606 483 AERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNhhtTTRTQMEMLTKDKMDKDEQIRKIKSRHSDEL 562
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 530 TNEAatGSHRVIEELREQLKDMKGKYEGASAEVGKLRNQIKQSEMLVEGFKRDESRLVEENKRLQKE------CSTCEID 603
Cdd:TIGR00606 563 TSLL--GYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKlfdvcgSQDEESD 640
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 604 RERRGRRVTELEGQLKELGAKLALSvptetfesmkSSLSNDISEKAKRLAEVGRDYESSQGEIRQLKRDLES-VRAQHIR 682
Cdd:TIGR00606 641 LERLKEEIEKSSKQRAMLAGATAVY----------SQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSkLRLAPDK 710
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 683 PEEHEQLRSRLEQKSGELGKKVTELTLKNQTLQKEVEKLYADNKLLNQQVHSLTVEMKTRYVPL-RVSEEMKKAHDVN-- 759
Cdd:TIGR00606 711 LKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLgTIMPEEESAKVCLtd 790
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 760 ---VEDLNKKLSDATQRYAEkkleaerLLAENDKLTKNVSRLEAVFVAPEKHEkELMGLKSNIAELKMQLCELNKKCGEG 836
Cdd:TIGR00606 791 vtiMERFQMELKDVERKIAQ-------QAAKLQGSDLDRTVQQVNQEKQEKQH-ELDTVVSKIELNRKLIQDQQEQIQHL 862
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 837 QEKIRALMSENTSLKKTLSSqyvpAKTHEEVKASLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVL--RRNLENVQ 914
Cdd:TIGR00606 863 KSKTNELKSEKLQIGTNLQR----RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELisSKETSNKK 938
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 915 NQMKADYVSlEEHSRKMNMANQSLKEAQDAHTALLadyRQGQEEIVTLHAEIKAQKKELDTIQECIKLKYAPLSRMEECE 994
Cdd:TIGR00606 939 AQDKVNDIK-EKVKNIHGYMKDIENKIQDGKDDYL---KQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQE 1014
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*
gi 564364065 995 RKFK--ATEKALKEQLSE-----QTHKGQVRDEEVKKGKQENERLRKDLAALQKE 1042
Cdd:TIGR00606 1015 RWLQdnLTLRKRENELKEveeelKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRN 1069
|
|
| PHA02798 |
PHA02798 |
ankyrin-like protein; Provisional |
152-228 |
1.24e-03 |
|
ankyrin-like protein; Provisional
Pssm-ID: 222931 [Multi-domain] Cd Length: 489 Bit Score: 43.28 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 152 IQLLCDHGASVNAKDIDGRTPL--VLATQ-MCRPTICQLLIDRGADVNSRDKQNRTALMLGCEYGCR---DAVEVLVRNG 225
Cdd:PHA02798 92 VKILIENGADINKKNSDGETPLycLLSNGyINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHidiEIIKLLLEKG 171
|
...
gi 564364065 226 ADL 228
Cdd:PHA02798 172 VDI 174
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
689-1179 |
1.33e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 689 LRSRLEQKSGELGKKVTELTLKNqtlQKEVEKLYADNKLLNQQVHSLtvemktryvplrvseemkkahdvnvEDLNKKLS 768
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELN---LKELKELEEELKEAEEKEEEY-------------------------AELQEELE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 769 DATQRYAEKKLEAERLLAENDKLTKNVSRLEAvFVAPEKHEKELMGLKSNIAELKMQLCElnkkcgegqekIRALMSENT 848
Cdd:COG4717 99 ELEEELEELEAELEELREELEKLEKLLQLLPL-YQELEALEAELAELPERLEELEERLEE-----------LRELEEELE 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 849 SLKKTLssqyvpAKTHEEVKASLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLENVQNQMKADYVSLEEHS 928
Cdd:COG4717 167 ELEAEL------AELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 929 rkmnmANQSLKEAQDAHTALLAdyrqgqeeIVTLHAEIKAQKKELDTIQECIKLKYAPLSRMEECERKFKATEKALKEQL 1008
Cdd:COG4717 241 -----LEERLKEARLLLLIAAA--------LLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEEL 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1009 SEQTHKGQVRDEEVKKGKQE----NERLRKDLAALQKELKDRNVLVEEAREAERALsrKTEELGKQLKELSQKYsDVKSE 1084
Cdd:COG4717 308 QALPALEELEEEELEELLAAlglpPDLSPEELLELLDRIEELQELLREAEELEEEL--QLEELEQEIAALLAEA-GVEDE 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1085 RE-----KLVEEKAKQTSEILAAQNLLQKQPVPLEQVEAL--KTSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLLEn 1157
Cdd:COG4717 385 EElraalEQAEEYQELKEELEELEEQLEELLGELEELLEAldEEELEEELEELEEELEELEEELEELREELAELEAELE- 463
|
490 500
....*....|....*....|..
gi 564364065 1158 QKSSSVTLADHLQLKEALEKEV 1179
Cdd:COG4717 464 QLEEDGELAELLQELEELKAEL 485
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
525-1091 |
1.35e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 525 LKEHLTNEAATGSHRVIEELREQLKDMKGKYEGASAEVGKLRNQIKQSEMLVEGF--KRDE-SRLVEENKRLQKECSTCE 601
Cdd:PRK02224 192 LKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHeeRREElETLEAEIEDLRETIAETE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 602 IDRERRGRRVTELEGQLKELGAKLALSVPTETFESMK-SSLSNDISEKAKRLAEVGRDYESSQGEIRQLKRDLESVRAqh 680
Cdd:PRK02224 272 REREELAEEVRDLRERLEELEEERDDLLAEAGLDDADaEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLRE-- 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 681 iRPEEHEQLRSRLEQKSGELGKKVTELTLKNQTLQKEVEKLYADNKLLNQQVHSLTVEmktryvpLRVSEEMKKAHDVNV 760
Cdd:PRK02224 350 -DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVD-------LGNAEDFLEELREER 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 761 EDLNKKLSD--ATQRYAEKKL-EAERLLAEND--------KLTKNVSRLEAVFVAPEKHEKELmglksniAELKMQLCEL 829
Cdd:PRK02224 422 DELREREAEleATLRTARERVeEAEALLEAGKcpecgqpvEGSPHVETIEEDRERVEELEAEL-------EDLEEEVEEV 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 830 NKKCgEGQEKIRALMSENTSLKKTlssqyvpAKTHEEVKASLSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRN 909
Cdd:PRK02224 495 EERL-ERAEDLVEAEDRIERLEER-------REDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEE 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 910 LENVQNQMKAdyvsleehsrkMNMANQSLKEAQDAhtalLADYRQGQEEIVTLHAEIKAQKKELDTIQECIKLKYAPLS- 988
Cdd:PRK02224 567 AEEAREEVAE-----------LNSKLAELKERIES----LERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAe 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 989 ---RMEECERKFK--ATEKALKEQLSEQTHKGQVrDEEVKKGKQENERLRKDLAALQKELKDRNVLVEEaREAERALSRK 1063
Cdd:PRK02224 632 kreRKRELEAEFDeaRIEEAREDKERAEEYLEQV-EEKLDELREERDDLQAEIGAVENELEELEELRER-REALENRVEA 709
|
570 580
....*....|....*....|....*....
gi 564364065 1064 TEELGKQLKELSQKYSDVKSE-REKLVEE 1091
Cdd:PRK02224 710 LEALYDEAEELESMYGDLRAElRQRNVET 738
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
468-846 |
1.48e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 468 ELAHKVAECKALALECERVKEDSDEQIKQLEDALKDVQKRMyesegkvkqmqTHFLALKEHLTNEAATGSHRvIEELREQ 547
Cdd:PRK02224 255 TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEER-----------DDLLAEAGLDDADAEAVEAR-REELEDR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 548 LKDMKGKYEGASAEVGKLRNQIkqsEMLVEGFKRDESR---LVEENKRLQKECSTCEIDRERRGRRVTELEGQLKELGAK 624
Cdd:PRK02224 323 DEELRDRLEECRVAAQAHNEEA---ESLREDADDLEERaeeLREEAAELESELEEAREAVEDRREEIEELEEEIEELRER 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 625 LA-LSVPTETFESMKSSLSNDISEKAKRLAEVGRDYESSQGEIRQLKRDLE-------------SVRAQHI-----RPEE 685
Cdd:PRK02224 400 FGdAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEagkcpecgqpvegSPHVETIeedreRVEE 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 686 HEQLRSRLEQKSGELGKKVTELTlKNQTLQKEVEKLYADNKLLNQQV--HSLTVEMKTryvpLRVSEEMKKAHDVNVEDL 763
Cdd:PRK02224 480 LEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERLEERREDLEELIaeRRETIEEKR----ERAEELRERAAELEAEAE 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 764 NKKLSDATQR-YAEKKLEA----ERLLAENDKLTKNVSRLEAVFVAPEKHEKELMGLKSNIAELKMQLCELNKKCGEGQE 838
Cdd:PRK02224 555 EKREAAAEAEeEAEEAREEvaelNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRE 634
|
....*...
gi 564364065 839 KIRALMSE 846
Cdd:PRK02224 635 RKRELEAE 642
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
442-1222 |
1.57e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 442 EILKKELEAMRTFCDSAKQDRLKLQNELAHKVAECKALAleceRVKEDSDEQIKQLEDALKDVQKRMYESE-------GK 514
Cdd:pfam01576 359 EELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQ----QAKQDSEHKRKKLEGQLQELQARLSESErqraelaEK 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 515 VKQMQTHFLALKeHLTNEAATGSHRVIEE---LREQLKDMKGKYEGASAEVGKLRNQIKQSEmlvegfkrdesrlvEENK 591
Cdd:pfam01576 435 LSKLQSELESVS-SLLNEAEGKNIKLSKDvssLESQLQDTQELLQEETRQKLNLSTRLRQLE--------------DERN 499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 592 RLQKECSTCEIDRERRGRRVTELEGQLKELGAKL-ALSVPTETFESMKSSLSNDISEKAKRLAEVGRDYESSQGEIRQLK 670
Cdd:pfam01576 500 SLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLeEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQ 579
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 671 RDLE--SVRAQHIRpeeheQLRSRLEQKSGELGKKVTELTLKNQTLQKEVEKLYADNKLLNQQVHSLTvemktryvplRV 748
Cdd:pfam01576 580 QELDdlLVDLDHQR-----QLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLA----------RA 644
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 749 SEEMKKAHDvNVEDLNKKLsdatqryaekKLEAERLLAENDKLTKNVSRLEavfvapekheKELMGLKSNIAELKMQLCE 828
Cdd:pfam01576 645 LEEALEAKE-ELERTNKQL----------RAEMEDLVSSKDDVGKNVHELE----------RSKRALEQQVEEMKTQLEE 703
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 829 LNKKCGEGqEKIRALMSENTSLKKTLSSQYVPAKTH--EEVKASLSSTL---------EKTNRAL-LDSKKRLDDTSQEF 896
Cdd:pfam01576 704 LEDELQAT-EDAKLRLEVNMQALKAQFERDLQARDEqgEEKRRQLVKQVreleaeledERKQRAQaVAAKKKLELDLKEL 782
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 897 -------SKLREEnevLRRNLENVQNQMKADYVSLEEHSRKMNMANQSLKEAQDAHTALLADYRQGQEEIVTLHAEIKAQ 969
Cdd:pfam01576 783 eaqidaaNKGREE---AVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQA 859
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 970 KKELDTIQECIKLKYAPLSRMEECERKFKATEKALKEQLSEQTHKGQVRDEEVKKGKQENERLRKDLAalqkelkdrnvl 1049
Cdd:pfam01576 860 QQERDELADEIASGASGKSALQDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELA------------ 927
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1050 veeareAERALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTseilaaqnllqkqpvpleqVEALKTSLNGTIEH 1129
Cdd:pfam01576 928 ------AERSTSQKSESARQQLERQNKELKAKLQEMEGTVKSKFKSS-------------------IAALEAKIAQLEEQ 982
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1130 LKEELRSKERCLEREQQAVSQLQQLLEnQKSSSVTLADhlQLKEALEKEVGIMKA---SLREKEEESQKKTKEVSKLQTE 1206
Cdd:pfam01576 983 LEQESRERQAANKLVRRTEKKLKEVLL-QVEDERRHAD--QYKDQAEKGNSRMKQlkrQLEEAEEEASRANAARRKLQRE 1059
|
810
....*....|....*.
gi 564364065 1207 VQNTKQALKNLeTREV 1222
Cdd:pfam01576 1060 LDDATESNESM-NREV 1074
|
|
| PTZ00322 |
PTZ00322 |
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional |
77-177 |
1.60e-03 |
|
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Pssm-ID: 140343 [Multi-domain] Cd Length: 664 Bit Score: 42.96 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 77 VAAKGNLECLNAILTHGIDVATRDSAGRNALHLAAKYGHALCLQKLLQYNCPTEHVDLQGRTALHDAAMADCPSSIQLL- 155
Cdd:PTZ00322 89 LAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLs 168
|
90 100
....*....|....*....|....*...
gi 564364065 156 ----CDHGASVNAK--DIDGRTPLVLAT 177
Cdd:PTZ00322 169 rhsqCHFELGANAKpdSFTGKPPSLEDS 196
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1198-1328 |
1.72e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1198 KEVSKLQTEVQNTKQALKNLETRevvdMSKYKATKNDLETQISNLNDKLASLNRKYDQVCEEKVSAKDEKELLHLniEQE 1277
Cdd:COG1579 24 HRLKELPAELAELEDELAALEAR----LEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEAL--QKE 97
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 564364065 1278 IRDQKERCDKSLTTIMELQQRIQESAKQIEAKDNKITELLNDVERLKQALN 1328
Cdd:COG1579 98 IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELD 148
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1032-1270 |
1.89e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.61 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1032 LRKDLAALQKELKDRNVL-VEEAREAERALsrKTEELGKQLKELSQKYSDVKSEREKL-VEEKAKQTSEILAAQNLLQKQ 1109
Cdd:PRK05771 14 LKSYKDEVLEALHELGVVhIEDLKEELSNE--RLRKLRSLLTKLSEALDKLRSYLPKLnPLREEKKKVSVKSLEELIKDV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1110 PVPLEQVEALKTSLNGTIEHLKEELRSkercLEREQQAVSQLQQL---LENQKSSSVTLADHLQLKEALEKEVGImKASL 1186
Cdd:PRK05771 92 EEELEKIEKEIKELEEEISELENEIKE----LEQEIERLEPWGNFdldLSLLLGFKYVSVFVGTVPEDKLEELKL-ESDV 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1187 REKEEESQKKTKE-----VSKLQTEVQNT---KQALKNLETREVVD----MSKYKATKNDLETQISNLNDKLASLNRKYD 1254
Cdd:PRK05771 167 ENVEYISTDKGYVyvvvvVLKELSDEVEEelkKLGFERLELEEEGTpselIREIKEELEEIEKERESLLEELKELAKKYL 246
|
250 260
....*....|....*....|
gi 564364065 1255 Q---VCEEKVSA-KDEKELL 1270
Cdd:PRK05771 247 EellALYEYLEIeLERAEAL 266
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
289-1130 |
1.98e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.12 E-value: 1.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 289 KSNQREHHSFQDLEMENEDLK------EKLRKIQQEQRILLDKVNGlqlqlNEEVMVADDL--ESEREKLKSLLAAKEKQ 360
Cdd:TIGR01612 904 KSIEEEYQNINTLKKVDEYIKicentkESIEKFHNKQNILKEILNK-----NIDTIKESNLieKSYKDKFDNTLIDKINE 978
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 361 HEE-----SLRTIEALKNRF-KYFESDHPGPGSyssnRKEDMLHKQ------------GQMYTADSQCTSPGVPPHMQSR 422
Cdd:TIGR01612 979 LDKafkdaSLNDYEAKNNELiKYFNDLKANLGK----NKENMLYHQfdekekatndieQKIEDANKNIPNIEIAIHTSIY 1054
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 423 SMLRPLELSLPSQTSYSENEILKKELEAMRTFcdSAKQDRLKLQNELAHKVAECKALALECERVKED---SDEQIKQLED 499
Cdd:TIGR01612 1055 NIIDEIEKEIGKNIELLNKEILEEAEINITNF--NEIKEKLKHYNFDDFGKEENIKYADEINKIKDDiknLDQKIDHHIK 1132
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 500 ALKDVQKRmyeSEGKVKQMQTHFLALKE----HLTNEAATGSHRVIEELREQLKDMKGKYEgasaEVGKLRNQIKQSEml 575
Cdd:TIGR01612 1133 ALEEIKKK---SENYIDEIKAQINDLEDvadkAISNDDPEEIEKKIENIVTKIDKKKNIYD----EIKKLLNEIAEIE-- 1203
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 576 vegfkRDESRLVEE---NKRLQKECSTC---EIDRERRGRR--VTELEGQLKELgaklalsvptetfesmksslsNDISE 647
Cdd:TIGR01612 1204 -----KDKTSLEEVkgiNLSYGKNLGKLfleKIDEEKKKSEhmIKAMEAYIEDL---------------------DEIKE 1257
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 648 KAKRLAEVGRDYESSQGEIRQLKRDLESVRAQHIRPEEHEQLRSRLEQKSGELGKKVTELTLKNQtLQKEVEKLYADNKL 727
Cdd:TIGR01612 1258 KSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDIND-IKKELQKNLLDAQK 1336
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 728 LNQQVHSLTVEMKTRYVPLRVSEEMK-----KAHDVNVEDLNKKLSDATQRyAEKKLEAerlLAENDKLTKNVSRLEAVF 802
Cdd:TIGR01612 1337 HNSDINLYLNEIANIYNILKLNKIKKiidevKEYTKEIEENNKNIKDELDK-SEKLIKK---IKDDINLEECKSKIESTL 1412
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 803 vapekHEKELMGLKSNIAELKMQLC--ELN-----KKCGEGQEKIrALMSENTSLKKTlSSQYVPAKTHEEVKASLSSTL 875
Cdd:TIGR01612 1413 -----DDKDIDECIKKIKELKNHILseESNidtyfKNADENNENV-LLLFKNIEMADN-KSQHILKIKKDNATNDHDFNI 1485
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 876 EKTnRALLDSKKRLDDTSQEFSKLREENEVLRRNLENVQNQMKADYVSLE---EHSRKMNMANQSLKEAQDAHTAllady 952
Cdd:TIGR01612 1486 NEL-KEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSALAiknKFAKTKKDSEIIIKEIKDAHKK----- 1559
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 953 rqgqeeiVTLHAEIKAQKKEldtiqeciKLKYAPLSRMEECERKFKATEKALKEQLS-EQTHKGQVRDEEVKKGK----Q 1027
Cdd:TIGR01612 1560 -------FILEAEKSEQKIK--------EIKKEKFRIEDDAAKNDKSNKAAIDIQLSlENFENKFLKISDIKKKIndclK 1624
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1028 ENERLRKDLAAL-----QKELKDRNVLVEEAREAERALSRKTEELGKQLKELSQKYSDVKSEREKLveEKAKQTSEILAA 1102
Cdd:TIGR01612 1625 ETESIEKKISSFsidsqDTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDV--DQHKKNYEIGII 1702
|
890 900
....*....|....*....|....*...
gi 564364065 1103 QNLLQKQPVPLEQVEALKTSLNGTIEHL 1130
Cdd:TIGR01612 1703 EKIKEIAIANKEEIESIKELIEPTIENL 1730
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
992-1331 |
2.01e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 42.71 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 992 ECERKFKATEKALKEQLSEQTHKGQVRDEEVKKGKQEneRLRKDLAA-LQKELKDRNvlveearEAERALSRKTEELGKQ 1070
Cdd:pfam05667 210 ERNAAELAAAQEWEEEWNSQGLASRLTPEEYRKRKRT--KLLKRIAEqLRSAALAGT-------EATSGASRSAQDLAEL 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1071 LKELSQKY--SDVKSEREKLVEEKAKQ-TSEILAAQNLLQKQPVPLEQV----EALKTSLNGTIEHLKEELRSKERCLER 1143
Cdd:pfam05667 281 LSSFSGSSttDTGLTKGSRFTHTEKLQfTNEAPAATSSPPTKVETEEELqqqrEEELEELQEQLEDLESSIQELEKEIKK 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1144 EQQAVSQLQQLLENQKSSSVTLADHLQLKEALEKEvgimkasLREKEEEsqkktkeVSKLQTEVQNTKQALKNL----ET 1219
Cdd:pfam05667 361 LESSIKQVEEELEELKEQNEELEKQYKVKKKTLDL-------LPDAEEN-------IAKLQALVDASAQRLVELagqwEK 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1220 REVVDMSKY---KATKNDLETQISNLNDKLASLNRKYDQVCEEkVSAKDE--KELLhlnieqeirDQKERCDKSlTTIME 1294
Cdd:pfam05667 427 HRVPLIEEYralKEAKSNKEDESQRKLEEIKELREKIKEVAEE-AKQKEElyKQLV---------AEYERLPKD-VSRSA 495
|
330 340 350
....*....|....*....|....*....|....*..
gi 564364065 1295 LQQRIQESAKQIEAKDNKITELLNDVERLKQALNGLS 1331
Cdd:pfam05667 496 YTRRILEIVKNIKKQKEEITKILSDTKSLQKEINSLT 532
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1019-1232 |
2.13e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1019 DEEVKKGKQENERLRKDLAALQKELKDRNVLVEEAREAERALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAKQ--- 1095
Cdd:COG3883 22 QKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSggs 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1096 ---TSEILAAQN---LLQKQPVpLEQVEALKTSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLLENQKSSSVT-LADH 1168
Cdd:COG3883 102 vsyLDVLLGSESfsdFLDRLSA-LSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAqQAEQ 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564364065 1169 LQLKEALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLETREVVDMSKYKATK 1232
Cdd:COG3883 181 EALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 244
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1145-1327 |
2.81e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1145 QQAVSQLQQLLENQKSSSVTLADHLQLKEALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLetreVVD 1224
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER----ARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1225 MSKYKATKNDLE-----TQISNLNDKLASLNRkydqvceekVSAKDEKELLHLN-IEQEIRDQKERCDKSLTTIMELQQR 1298
Cdd:COG3883 95 LYRSGGSVSYLDvllgsESFSDFLDRLSALSK---------IADADADLLEELKaDKAELEAKKAELEAKLAELEALKAE 165
|
170 180
....*....|....*....|....*....
gi 564364065 1299 IQESAKQIEAKDNKITELLNDVERLKQAL 1327
Cdd:COG3883 166 LEAAKAELEAQQAEQEALLAQLSAEEAAA 194
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
1063-1334 |
2.94e-03 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 42.51 E-value: 2.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1063 KTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTS---EILAAQNLLQKQPVPLEQVEALKTSLNGTIEHLKEeLRSKER 1139
Cdd:PTZ00440 451 KINELKKSINQLKTLISIMKSFYDLIISEKDSMDSkekKESSDSNYQEKVDELLQIINSIKEKNNIVNNNFKN-IEDYYI 529
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1140 CLEREQQAVSQLQQLLENQKSSSVTLADHlqlkealEKEVGIMKASLREK---EEESQKKTKEVSKLQTEVQNTKQALKN 1216
Cdd:PTZ00440 530 TIEGLKNEIEGLIELIKYYLQSIETLIKD-------EKLKRSMKNDIKNKikyIEENVDHIKDIISLNDEIDNIIQQIEE 602
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1217 LETREVVDMSKYKATKNDLETQISNLNDK------------LASLNRKYDQVCEEKVSAKDEKELLHLNIEQEIRDQKER 1284
Cdd:PTZ00440 603 LINEALFNKEKFINEKNDLQEKVKYILNKfykgdlqelldeLSHFLDDHKYLYHEAKSKEDLQTLLNTSKNEYEKLEFMK 682
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 564364065 1285 CDKSLTTIMELQqriQESAKQIEAKDNKITELLNDVErlKQALNGLSQLT 1334
Cdd:PTZ00440 683 SDNIDNIIKNLK---KELQNLLSLKENIIKKQLNNIE--QDISNSLNQYT 727
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
876-1124 |
3.23e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 3.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 876 EKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLENvqnQMKADYVSLEEhsrkmnmanqSLKEAQDAHTALLADYRQG 955
Cdd:PRK05771 39 ELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREE---KKKVSVKSLEE----------LIKDVEEELEKIEKEIKEL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 956 QEEIVTLHAEIKAQKKEldtIQECIKLKYAPLSrmEECERKFKATE-------KALKEQLSEQTHKGQVRDEEVKKGK-- 1026
Cdd:PRK05771 106 EEEISELENEIKELEQE---IERLEPWGNFDLD--LSLLLGFKYVSvfvgtvpEDKLEELKLESDVENVEYISTDKGYvy 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1027 ----------QENERLRKDLAALQKELKDRNVLVEEAREAERALS---RKTEELGKQLKELSQKYSD-VKSEREKL--VE 1090
Cdd:PRK05771 181 vvvvvlkelsDEVEEELKKLGFERLELEEEGTPSELIREIKEELEeieKERESLLEELKELAKKYLEeLLALYEYLeiEL 260
|
250 260 270
....*....|....*....|....*....|....*
gi 564364065 1091 EKAKQTSEILAAQNLLQKQP-VPLEQVEALKTSLN 1124
Cdd:PRK05771 261 ERAEALSKFLKTDKTFAIEGwVPEDRVKKLKELID 295
|
|
| PHA02946 |
PHA02946 |
ankyin-like protein; Provisional |
152-228 |
3.36e-03 |
|
ankyin-like protein; Provisional
Pssm-ID: 165256 [Multi-domain] Cd Length: 446 Bit Score: 41.58 E-value: 3.36e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564364065 152 IQLLCDHGASVNAKDIDGRTPLVLATQMCRPTICQLLIDRGADVNSRDKQNRTAL--MLGCEYGCRDAVEVLVRNGADL 228
Cdd:PHA02946 55 VEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLyyLSGTDDEVIERINLLVQYGAKI 133
|
|
| Ank_3 |
pfam13606 |
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the ... |
168-196 |
3.38e-03 |
|
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities.
Pssm-ID: 463933 [Multi-domain] Cd Length: 30 Bit Score: 36.47 E-value: 3.38e-03
10 20
....*....|....*....|....*....
gi 564364065 168 DGRTPLVLATQMCRPTICQLLIDRGADVN 196
Cdd:pfam13606 1 DGNTPLHLAARNGRLEIVKLLLENGADIN 29
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
444-848 |
3.59e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 3.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 444 LKKELEAMRTFCDSAKQDRLKLQNELAHKVAECKALALECERvkEDSDEQIKQLEDALKDVQKRMYESEGKVKQMQTHFL 523
Cdd:COG4717 93 LQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQEL--EALEAELAELPERLEELEERLEELRELEEELEELEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 524 ALKEhLTNEAATGSHRVIEELREQLKDMKGKYEGASAEVGKLRNQIKQSEmlvegfkrdesrlvEENKRLQKecstcEID 603
Cdd:COG4717 171 ELAE-LQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQ--------------EELEELEE-----ELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 604 RERRGRRVTELEGQLKELGAKLALSVPTETFESMKSSLSNDISEKAKRLAEVGRDYESSQGEIRQLKRDLESVRAQHIRP 683
Cdd:COG4717 231 QLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQAL 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 684 EEHEQLRSRleqksgELGKKVTELTLKNQTLQKEVEKLYADN---KLLNQQVHSLTVEMKTRYVPLRVSEEMKKAHDVNV 760
Cdd:COG4717 311 PALEELEEE------ELEELLAALGLPPDLSPEELLELLDRIeelQELLREAEELEEELQLEELEQEIAALLAEAGVEDE 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 761 EDLNKKLsDATQRYAEKKLEAERLLAENDKLTKNVSRLEAVFVaPEKHEKELMGLKSNIAELKMQLCELNKKCGEGQEKI 840
Cdd:COG4717 385 EELRAAL-EQAEEYQELKEELEELEEQLEELLGELEELLEALD-EEELEEELEELEEELEELEEELEELREELAELEAEL 462
|
....*...
gi 564364065 841 RALMSENT 848
Cdd:COG4717 463 EQLEEDGE 470
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1002-1264 |
3.79e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 3.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1002 KALKEQLSE-QTHKGQVRDEEVKKgKQENERLRKDLAALQKELKDRNVL---------------VEEAREAERALSRKTE 1065
Cdd:COG3096 839 AALRQRRSElERELAQHRAQEQQL-RQQLDQLKEQLQLLNKLLPQANLLadetladrleelreeLDAAQEAQAFIQQHGK 917
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1066 ELGK-------------QLKELSQKYSDVKSEREKLveekaKQTSEILA--AQNLL----QKQPVPLEQVEALKTSLNGT 1126
Cdd:COG3096 918 ALAQleplvavlqsdpeQFEQLQADYLQAKEQQRRL-----KQQIFALSevVQRRPhfsyEDAVGLLGENSDLNEKLRAR 992
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1127 IEHLKEELRSKERCLEREQQAVSQLQQLLENQKSSSVTLADHLQlkeALEKEVGIMkaSLREKEEESQKKTKEVSKLQTE 1206
Cdd:COG3096 993 LEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQ---ELEQELEEL--GVQADAEAEERARIRRDELHEE 1067
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 564364065 1207 VQNTKQALKNLETrevvdmskykaTKNDLETQISNLNDKLASLNRKYDQVCEEKVSAK 1264
Cdd:COG3096 1068 LSQNRSRRSQLEK-----------QLTRCEAEMDSLQKRLRKAERDYKQEREQVVQAK 1114
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
746-1019 |
3.97e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.54 E-value: 3.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 746 LRVSEEMKKAHDVNVEDLNKKLS--DATQRYAEKKLEA-ERLLAENDKLTK-NVSRLEAVFvapEKHEKELMGLKSNIAE 821
Cdd:PHA02562 162 ISVLSEMDKLNKDKIRELNQQIQtlDMKIDHIQQQIKTyNKNIEEQRKKNGeNIARKQNKY---DELVEEAKTIKAEIEE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 822 LKMQLCELNKKCGEGQEKIRALMSENTSLKKTLSSQYVPAKTHEE--VKASLSSTLEKTNRALLDSKKRLDDTSQEFSKL 899
Cdd:PHA02562 239 LTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKggVCPTCTQQISEGPDRITKIKDKLKELQHSLEKL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 900 REEnevlrrnlenvqnqmkadyvsLEEHSRKMNMANQSLKEAQDahtaLLADYRQGQEEIVTLHAEIKAQKKELDTIQEC 979
Cdd:PHA02562 319 DTA---------------------IDELEEIMDEFNEQSKKLLE----LKNKISTNKQSLITLVDKAKKVKAAIEELQAE 373
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 564364065 980 IKLKYAPLSRMEECERKFKATEKALKEqlsEQTHKGQVRD 1019
Cdd:PHA02562 374 FVDNAEELAKLQDELDKIVKTKSELVK---EKYHRGIVTD 410
|
|
| Ank_5 |
pfam13857 |
Ankyrin repeats (many copies); |
157-206 |
4.54e-03 |
|
Ankyrin repeats (many copies);
Pssm-ID: 433530 [Multi-domain] Cd Length: 56 Bit Score: 36.56 E-value: 4.54e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 564364065 157 DHG-ASVNAKDIDGRTPLVLATQMCRPTICQLLIDRGADVNSRDKQNRTAL 206
Cdd:pfam13857 3 EHGpIDLNRLDGEGYTPLHVAAKYGALEIVRVLLAYGVDLNLKDEEGLTAL 53
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1000-1406 |
4.56e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.44 E-value: 4.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1000 TEKALKEQLseqthkgqvrdEEVKKGKQENErlrkDLAALQKELKDRNVLVEEAREAERalsrKTEELGKQLKELSQKYS 1079
Cdd:PRK11281 37 TEADVQAQL-----------DALNKQKLLEA----EDKLVQQDLEQTLALLDKIDRQKE----ETEQLKQQLAQAPAKLR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1080 DVKSEREKLVEEKAKQTSEILAAQNLLQKQpvplEQVEALKTSLNGTIEHLKE---ELRSKERCLEREQQAVS----QLQ 1152
Cdd:PRK11281 98 QAQAELEALKDDNDEETRETLSTLSLRQLE----SRLAQTLDQLQNAQNDLAEynsQLVSLQTQPERAQAALYansqRLQ 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1153 Q---LLENQKSSSVTLADHLQLKEALEKevgimkASLREKEEESQKKTKEVSKLQtEVQNTKQALKNLETrevvdmskyk 1229
Cdd:PRK11281 174 QirnLLKGGKVGGKALRPSQRVLLQAEQ------ALLNAQNDLQRKSLEGNTQLQ-DLLQKQRDYLTARI---------- 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1230 atkNDLETQISNLNDklaSLNRKYDQVCEEKVSakdekellhlniEQEIRDQKERCDKSLTTIMELQQRIQESAKQIEAK 1309
Cdd:PRK11281 237 ---QRLEHQLQLLQE---AINSKRLTLSEKTVQ------------EAQSQDEAARIQANPLVAQELEINLQLSQRLLKAT 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1310 DnKITELLNDVERLKQALNGLSQltysSGGPTKRQ-SQLVDTL-------QQR--------VRDLQQQLADAdRQHQ-EV 1372
Cdd:PRK11281 299 E-KLNTLTQQNLRVKNWLDRLTQ----SERNIKEQiSVLKGSLllsrilyQQQqalpsadlIEGLADRIADL-RLEQfEI 372
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 564364065 1373 ---------IAIYRTHLLSAAQGHMDEDVQAALLQIIQMRQGL 1406
Cdd:PRK11281 373 nqqrdalfqPDAYIDKLEAGHKSEVTDEVRDALLQLLDERREL 415
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1125-1327 |
4.59e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 4.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1125 GTIEHLKEELRSKERCLEREQQAVSQLQQLLENQksssvtLADHLQLKEALEKEVGIMKASLREKEEESQKKTKEVSKLQ 1204
Cdd:PHA02562 163 SVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQ------IKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEI 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1205 TEVQNtkqALKNLetreVVDMSKYKATKNDLETQISNLNDKLASLNR-----KYDQVCEEKVSAKDEKEllhlNIEQEIR 1279
Cdd:PHA02562 237 EELTD---ELLNL----VMDIEDPSAALNKLNTAAAKIKSKIEQFQKvikmyEKGGVCPTCTQQISEGP----DRITKIK 305
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 564364065 1280 DQKERCDKSLTTIMELQQRIQESAKQIEAKDNKITELLNDVERLKQAL 1327
Cdd:PHA02562 306 DKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSL 353
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1026-1213 |
4.81e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.35 E-value: 4.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1026 KQENERLRKDLAALQKELKdrnvlvEEAREAERALsRKTEELgkqLKELSQKYSDVKSEREKLVEEKAKQTSEILAAQNl 1105
Cdd:PRK00409 515 KEKLNELIASLEELERELE------QKAEEAEALL-KEAEKL---KEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAK- 583
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1106 lqkqpvplEQVEALKTSLNGTIEHLKEELRSKErcLEREQQAVSQLQQLLENQKSSSVTLADHLQLK------------E 1173
Cdd:PRK00409 584 --------KEADEIIKELRQLQKGGYASVKAHE--LIEARKRLNKANEKKEKKKKKQKEKQEELKVGdevkylslgqkgE 653
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564364065 1174 ALEK--------EVGIMKASLREKEEESQKKTKE--VSKLQTEVQNTKQA 1213
Cdd:PRK00409 654 VLSIpddkeaivQAGIMKMKVPLSDLEKIQKPKKkkKKKPKTVKPKPRTV 703
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
516-721 |
4.89e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 4.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 516 KQMQTHFLALKEHLTNeaATGSHRVIEELREQ------LKDMKGKYEGASAEVGKLRNQIK-----QSEMLVEGFKRDES 584
Cdd:COG4913 221 PDTFEAADALVEHFDD--LERAHEALEDAREQiellepIRELAERYAAARERLAELEYLRAalrlwFAQRRLELLEAELE 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 585 RLVEENKRLQKECSTCEIDRERRGRRVTELEGQLKELGAKLalsvptetfesmKSSLSNDISEKAKRLAEVGRDYESSQG 664
Cdd:COG4913 299 ELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDR------------LEQLEREIERLERELEERERRRARLEA 366
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564364065 665 EIRQLK-------RDLESVRAQ-HIRPEEHEQLRSRLEQKSGELGKKVTELTLKNQTLQKEVEKL 721
Cdd:COG4913 367 LLAALGlplpasaEEFAALRAEaAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1141-1330 |
5.27e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 5.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1141 LEREQQAVSQLQQLLENQKSSSVTLADHLQLKEALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLETR 1220
Cdd:PRK03918 157 LDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEEL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1221 EV------VDMSKYKATKNDLETQISNLNDKLASLnRKYDQVCEEKVS-----AKDEKELLHLN-IEQEIRDQKERCDKS 1288
Cdd:PRK03918 237 KEeieeleKELESLEGSKRKLEEKIRELEERIEEL-KKEIEELEEKVKelkelKEKAEEYIKLSeFYEEYLDELREIEKR 315
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 564364065 1289 LTTIMELQQRIQESAKQIEAKDNKITELLNDVERLKQALNGL 1330
Cdd:PRK03918 316 LSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEEL 357
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1002-1264 |
5.63e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 5.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1002 KALKEQLSEQTHKGQVRDEEVKKGKQENERLRKDLAALQKELKDRNVL---------------VEEAREAERALSRKtee 1066
Cdd:PRK04863 840 RQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLadetladrveeireqLDEAEEAKRFVQQH--- 916
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1067 lGKQLKELSQKYSDVKSEREKLVEEKAkqtsEILAAQNLLQKQPvplEQVEALkTSLNGTIEHLKEElrSKERCLEREQQ 1146
Cdd:PRK04863 917 -GNALAQLEPIVSVLQSDPEQFEQLKQ----DYQQAQQTQRDAK---QQAFAL-TEVVQRRAHFSYE--DAAEMLAKNSD 985
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1147 AVSQLQQLLENQKsssvtlADHLQLKEALekevgimkaslREKEEESQKKTKEVSKLQTEVQNTKQALKNLEtREVVDM- 1225
Cdd:PRK04863 986 LNEKLRQRLEQAE------QERTRAREQL-----------RQAQAQLAQYNQVLASLKSSYDAKRQMLQELK-QELQDLg 1047
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564364065 1226 ----------------------SKYKATKNDLETQIS-------NLNDKLASLNRKYDQVCEEKVSAK 1264
Cdd:PRK04863 1048 vpadsgaeerararrdelharlSANRSRRNQLEKQLTfceaemdNLTKKLRKLERDYHEMREQVVNAK 1115
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1031-1202 |
5.74e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 5.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1031 RLRKDLAALQKELKDrnvLVEEAREAERALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTS-----EILAaqnl 1105
Cdd:COG1579 21 RLEHRLKELPAELAE---LEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNvrnnkEYEA---- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1106 LQKQpvpLEQVEALKTSLNGTIEHLKEELRSKERCLEREQQAVSQLQQLLEnqksssvtladhlQLKEALEKEVGIMKAS 1185
Cdd:COG1579 94 LQKE---IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELE-------------EKKAELDEELAELEAE 157
|
170
....*....|....*..
gi 564364065 1186 LREKEEESQKKTKEVSK 1202
Cdd:COG1579 158 LEELEAEREELAAKIPP 174
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
871-1214 |
5.96e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 40.96 E-value: 5.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 871 LSSTLEKTNRALLDSKKRLDDTSQEFSKLREENEVLRRNLEN-------VQNQMKADYVSLEEHSRKMNMANQSLKEAQD 943
Cdd:pfam10174 294 LKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAkeqraaiLQTEVDALRLRLEEKESFLNKKTKQLQDLTE 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 944 AHTALLADYRQGQEEIVTLHAEIKAQKKELDTIQECIKLKYAPLS----RMEECERKFKATEKALK-------------E 1006
Cdd:pfam10174 374 EKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAglkeRVKSLQTDSSNTDTALTtleealsekeriiE 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1007 QLSEQTHK-GQVRDEEVKKGKQENERLRKDLAALQKELKDRNVLVEEAREAERALSRKTEELGKQLKELSQKYSDVKSER 1085
Cdd:pfam10174 454 RLKEQREReDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEEC 533
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1086 EKL---------VEEKAKQTSEILAAQNLLQKQpVPLEQVEALKTslNGTIEHLKEELRSKERCLEREQQAVSQLQQLLE 1156
Cdd:pfam10174 534 SKLenqlkkahnAEEAVRTNPEINDRIRLLEQE-VARYKEESGKA--QAEVERLLGILREVENEKNDKDKKIAELESLTL 610
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564364065 1157 NQKSSSVTLADHLQLKEALEKEVGIM---KASLREKEEESQKKTKEVSKLQTEVQNTKQAL 1214
Cdd:pfam10174 611 RQMKEQNKKVANIKHGQQEMKKKGAQlleEARRREDNLADNSQQLQLEELMGALEKTRQEL 671
|
|
| Ank_4 |
pfam13637 |
Ankyrin repeats (many copies); |
169-222 |
6.03e-03 |
|
Ankyrin repeats (many copies);
Pssm-ID: 372654 [Multi-domain] Cd Length: 54 Bit Score: 36.48 E-value: 6.03e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 564364065 169 GRTPLVLATQMCRPTICQLLIDRGADVNSRDKQNRTALMLGCEYGCRDAVEVLV 222
Cdd:pfam13637 1 ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL 54
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1002-1286 |
6.25e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.66 E-value: 6.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1002 KALKEQLSEQTHKGQVRDEEVKKGKQENERLRKDLAALQKELKDRNVLVEEAREAERALSRKTEELGKQLKELSQKYSDV 1081
Cdd:COG4372 41 DKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEEL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1082 KSEREKLVEEKAKQTSEILAAQNLLQKQpvpleqvEALKTSLNGTIEHLKEELRSKERCLEREQQAvsQLQQLLENQKSS 1161
Cdd:COG4372 121 QKERQDLEQQRKQLEAQIAELQSEIAER-------EEELKELEEQLESLQEELAALEQELQALSEA--EAEQALDELLKE 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1162 SVTLADHLQLKEALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQNTKQALKNLETREVVDMSKYKATKNDLETQISN 1241
Cdd:COG4372 192 ANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEK 271
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 564364065 1242 LNDKLASLNRKYDQVCEEKVSAKDEKELLHLNIEQEIRDQKERCD 1286
Cdd:COG4372 272 DTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDA 316
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
457-650 |
7.04e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.77 E-value: 7.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 457 SAKQDRLKLQNELAHKVAECKALALECERVKEDSDEQIKQLED---ALKDVQKRMYESEGKVKQMQTHFLALKEHLTNEA 533
Cdd:PHA02562 210 KNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDpsaALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPT 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 534 ATG----SHRVIEELREQLKDMKGKYEGASAEVGKL--------RNQIKQSEML--VEGFKRDESRLVEENKRLQKECST 599
Cdd:PHA02562 290 CTQqiseGPDRITKIKDKLKELQHSLEKLDTAIDELeeimdefnEQSKKLLELKnkISTNKQSLITLVDKAKKVKAAIEE 369
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564364065 600 CEIDRERRGRRVTELEGQLKELGAKLALSVPTETFESMKSSLSNDISEKAK 650
Cdd:PHA02562 370 LQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDSGIKAS 420
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
930-1103 |
7.41e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 7.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 930 KMNMANQSLKEAQDAHTALLADYRQGQEEIVTLHAEIKAQKKELDTIQECIKLKYAplsRMEECERKFKATEKALKEQLS 1009
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQA---EIAEAEAEIEERREELGERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1010 EQTHKGQVRD--------------------------------EEVKKGKQENERLRKDLAALQKELKDrnvLVEEAREAE 1057
Cdd:COG3883 94 ALYRSGGSVSyldvllgsesfsdfldrlsalskiadadadllEELKADKAELEAKKAELEAKLAELEA---LKAELEAAK 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 564364065 1058 RALSRKTEELGKQLKELSQKYSDVKSEREKLVEEKAKQTSEILAAQ 1103
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1114-1332 |
7.61e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 7.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1114 EQVEALKTSLNGTIEHLKEELRSKERCLEREQQAVSQLQQllenqKSSSVTLADHLQLkeaLEKEVGIMKASLREKEEES 1193
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQ-----KNGLVDLSEEAKL---LLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 1194 QKKTKEVSKLQTEVQNTKQALKNLETREVVdmSKYKATKNDLETQISNLNDKLASLNRKYDQVCEEKVSAKDEKELLHLN 1273
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPELLQSPVI--QQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQR 313
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564364065 1274 IEQEIRDQKERCDKSLTTIMELQQRIQESAKQIEAKDNKITELLNDVERLKQALNGLSQ 1332
Cdd:COG3206 314 ILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQ 372
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
815-1095 |
8.62e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 39.89 E-value: 8.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 815 LKSNIAELKMQLCELNKKCGEGQEKIRALMSENTSLKKTLSSQYVPAKTHEEVKASLSSTLEKTNRALLDSKKRLDDTSQ 894
Cdd:COG1340 6 LSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERDELNE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 895 EFSKLREENEVLRRNLENVqNQMKADYVSLEEhsrkmnmANQSLKEAQDAHTALLADYRQGQEEIVTLHAEIKAQKKELD 974
Cdd:COG1340 86 KLNELREELDELRKELAEL-NKAGGSIDKLRK-------EIERLEWRQQTEVLSPEEEKELVEKIKELEKELEKAKKALE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 975 TIQEciklkyapLSRMEECERKFKATEKALKEQLSEQTHKGQVRDEEVKKGKQENERLRKDLAALQKELKDRNVLVEEAR 1054
Cdd:COG1340 158 KNEK--------LKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADELH 229
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 564364065 1055 EAERALSRKTEELGKQLKELSQKYSDVKSEREK-LVEEKAKQ 1095
Cdd:COG1340 230 EEIIELQKELRELRKELKKLRKKQRALKREKEKeELEEKAEE 271
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
539-731 |
8.71e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.39 E-value: 8.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 539 RVIEELREQLKDMKGKYEGASAEVgklrNQIKQSEMLV---EGFKRDESRLVEENKRLQKEcstcEIDRERRGRRVTELE 615
Cdd:COG3206 175 KALEFLEEQLPELRKELEEAEAAL----EEFRQKNGLVdlsEEAKLLLQQLSELESQLAEA----RAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 616 GQLKELGAKLALSVPTETFesmkSSLSNDISEKAKRLAEVGRDYESSQGEIRQLKRDLESVRAqhirpeeheQLRSRLEQ 695
Cdd:COG3206 247 AQLGSGPDALPELLQSPVI----QQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRA---------QLQQEAQR 313
|
170 180 190
....*....|....*....|....*....|....*.
gi 564364065 696 KSGELGKKVTELTLKNQTLQKEVEKLYADNKLLNQQ 731
Cdd:COG3206 314 ILASLEAELEALQAREASLQAQLAQLEARLAELPEL 349
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
539-621 |
8.87e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.61 E-value: 8.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364065 539 RVIEELREQLKDMKGKYEGASAEVGKLRNQIK--QSEMLVEGFKRDE-SRLVEENKRLQKecstcEIDRERrgRRVTELE 615
Cdd:COG2433 420 EQVERLEAEVEELEAELEEKDERIERLERELSeaRSEERREIRKDREiSRLDREIERLER-----ELEEER--ERIEELK 492
|
....*.
gi 564364065 616 GQLKEL 621
Cdd:COG2433 493 RKLERL 498
|
|
| COG4026 |
COG4026 |
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General ... |
539-615 |
9.49e-03 |
|
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General function prediction only];
Pssm-ID: 443204 [Multi-domain] Cd Length: 287 Bit Score: 39.71 E-value: 9.49e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564364065 539 RVIEELREQLKDMKGKYEGASAEVGKLRNQIKQSEMLVEGFKRDESRLVEENKRLQKECSTCEIDRERRGRRVTELE 615
Cdd:COG4026 128 PEYNELREELLELKEKIDEIAKEKEKLTKENEELESELEELREEYKKLREENSILEEEFDNIKSEYSDLKSRFEELL 204
|
|
| |
