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Conserved domains on  [gi|564359957|ref|XP_006241668|]
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low-density lipoprotein receptor-related protein 12 isoform X1 [Rattus norvegicus]

Protein Classification

CUB and LDLa domain-containing protein( domain architecture ID 10035864)

CUB and LDLa (low-density lipoprotein receptor class A) domain-containing protein similar to Homo sapiens low-density lipoprotein receptor-related protein 12 which may be involved in the internalization of lipophilic molecules and/or signal transduction

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 28-139 3.08e-32

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


:

Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 120.98  E-value: 3.08e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564359957  28 CGETpeqIRGPT-GIITSPGWPSDYPAKINCSWLIRANPGEIITISFQDFDIQGSRRCTLDWLTI---ETYKNIESYRAC 103
Cdd:cd00041    1 CGGT---LTASTsGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSPNCSYDYLEIydgPSTSSPLLGRFC 77

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 564359957 104 GSTIPPPYISSQDHVWIRFHSDDSVSRKGFRLAYFS 139
Cdd:cd00041   78 GSTLPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 248-352 1.28e-23

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


:

Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 96.33  E-value: 1.28e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564359957 248 YGTFSSPNYPDFYPPGSNCTWLIDTGDHRKVILRFTDFKLDGTGY--GDYVKIYDGLEENPRKLLRVLTafdSHAPLTVV 325
Cdd:cd00041   10 SGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSPNcsYDYLEIYDGPSTSSPLLGRFCG---STLPPPII 86

                         90       100
                 ....*....|....*....|....*..
gi 564359957 326 SSSGQIRVHFCADKVNAARGFNATYQV 352
Cdd:cd00041   87 SSGNSLTVRFRSDSSVTGRGFKATYSA 113
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
 432-466 6.54e-11

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 57.60  E-value: 6.54e-11
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 564359957 432 CQPGNFHCKNNRCVFESWVCDSQDDCGDGSDEESC 466
Cdd:cd00112    1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
 147-181 2.05e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 56.06  E-value: 2.05e-10
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 564359957 147 CACDQFRCGNGKCIPEAWKCNSMDECGDSSDEEVC 181
Cdd:cd00112    1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
 394-429 2.78e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.20  E-value: 2.78e-07
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 564359957 394 CQKEEFPCsRNGVCYPRSDRCNYQNHCPNGSDEKNC 429
Cdd:cd00112    1 CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
 196-235 1.85e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 42.19  E-value: 1.85e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 564359957 196 CAYNQFQCLSRftkvyTCLPESLKCDGNIDCLDLGDEIDC 235
Cdd:cd00112    1 CPPNEFRCANG-----RCIPSSWVCDGEDDCGDGSDEENC 35
 
Name Accession Description Interval E-value
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 28-139 3.08e-32

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 120.98  E-value: 3.08e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564359957  28 CGETpeqIRGPT-GIITSPGWPSDYPAKINCSWLIRANPGEIITISFQDFDIQGSRRCTLDWLTI---ETYKNIESYRAC 103
Cdd:cd00041    1 CGGT---LTASTsGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSPNCSYDYLEIydgPSTSSPLLGRFC 77

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 564359957 104 GSTIPPPYISSQDHVWIRFHSDDSVSRKGFRLAYFS 139
Cdd:cd00041   78 GSTLPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113
CUB pfam00431
CUB domain;
28-137 6.20e-32

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 120.09  E-value: 6.20e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564359957   28 CGETpeqIRGPTGIITSPGWPSDYPAKINCSWLIRANPGEIITISFQDFDIQGSRRCTLDWLTI-----ETYKNIESYra 102
Cdd:pfam00431   1 CGGV---LTDSSGSISSPNYPNPYPPNKDCVWLIRAPPGFRVKLTFQDFELEDHDECGYDYVEIrdgpsASSPLLGRF-- 75

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 564359957  103 CGSTIPPPYISSQDHVWIRFHSDDSVSRKGFRLAY 137
Cdd:pfam00431  76 CGSGIPEDIVSSSNQMTIKFVSDASVQKRGFKATY 110
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 40-137 1.16e-28

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 110.17  E-value: 1.16e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564359957    40 GIITSPGWPSDYPAKINCSWLIRANPGEIITISFQDFDIQGSRRCTLDWLTI---ETYKNIESYRACGSTIPPPYISSQ- 115
Cdd:smart00042   1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSDNCEYDYVEIydgPSASSPLLGRFCGSEAPPPVISSSs 80

                           90       100
                   ....*....|....*....|..
gi 564359957   116 DHVWIRFHSDDSVSRKGFRLAY 137
Cdd:smart00042  81 NSLTLTFVSDSSVQKRGFSARY 102
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 248-352 1.28e-23

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 96.33  E-value: 1.28e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564359957 248 YGTFSSPNYPDFYPPGSNCTWLIDTGDHRKVILRFTDFKLDGTGY--GDYVKIYDGLEENPRKLLRVLTafdSHAPLTVV 325
Cdd:cd00041   10 SGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSPNcsYDYLEIYDGPSTSSPLLGRFCG---STLPPPII 86

                         90       100
                 ....*....|....*....|....*..
gi 564359957 326 SSSGQIRVHFCADKVNAARGFNATYQV 352
Cdd:cd00041   87 SSGNSLTVRFRSDSSVTGRGFKATYSA 113
CUB pfam00431
CUB domain;
240-350 7.52e-22

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 91.20  E-value: 7.52e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564359957  240 CGQWLKYFYGTFSSPNYPDFYPPGSNCTWLIDTGDHRKVILRFTDFKLDGTG--YGDYVKIYDGLEENPRKLLRvltaF- 316
Cdd:pfam00431   1 CGGVLTDSSGSISSPNYPNPYPPNKDCVWLIRAPPGFRVKLTFQDFELEDHDecGYDYVEIRDGPSASSPLLGR----Fc 76

                          90       100       110
                  ....*....|....*....|....*....|....
gi 564359957  317 DSHAPLTVVSSSGQIRVHFCADKVNAARGFNATY 350
Cdd:pfam00431  77 GSGIPEDIVSSSNQMTIKFVSDASVQKRGFKATY 110
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 249-350 2.78e-20

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 86.29  E-value: 2.78e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564359957   249 GTFSSPNYPDFYPPGSNCTWLIDTGDHRKVILRFTDFKLDGT---GYgDYVKIYDGLEENPRKLLRVLTafDSHAPLTVV 325
Cdd:smart00042   1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSdncEY-DYVEIYDGPSASSPLLGRFCG--SEAPPPVIS 77

                           90       100
                   ....*....|....*....|....*
gi 564359957   326 SSSGQIRVHFCADKVNAARGFNATY 350
Cdd:smart00042  78 SSSNSLTLTFVSDSSVQKRGFSARY 102
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
 432-466 6.54e-11

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 57.60  E-value: 6.54e-11
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 564359957 432 CQPGNFHCKNNRCVFESWVCDSQDDCGDGSDEESC 466
Cdd:cd00112    1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
 432-463 1.98e-10

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 56.10  E-value: 1.98e-10
                           10        20        30
                   ....*....|....*....|....*....|..
gi 564359957   432 CQPGNFHCKNNRCVFESWVCDSQDDCGDGSDE 463
Cdd:smart00192   2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
 147-181 2.05e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 56.06  E-value: 2.05e-10
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 564359957 147 CACDQFRCGNGKCIPEAWKCNSMDECGDSSDEEVC 181
Cdd:cd00112    1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
432-466 8.89e-10

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 54.56  E-value: 8.89e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 564359957  432 CQPGNFHCKNNRCVFESWVCDSQDDCGDGSDEESC 466
Cdd:pfam00057   3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
 147-178 9.66e-10

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 54.18  E-value: 9.66e-10
                           10        20        30
                   ....*....|....*....|....*....|..
gi 564359957   147 CACDQFRCGNGKCIPEAWKCNSMDECGDSSDE 178
Cdd:smart00192   2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
147-181 1.06e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 48.40  E-value: 1.06e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 564359957  147 CACDQFRCGNGKCIPEAWKCNSMDECGDSSDEEVC 181
Cdd:pfam00057   3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
 394-429 2.78e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.20  E-value: 2.78e-07
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 564359957 394 CQKEEFPCsRNGVCYPRSDRCNYQNHCPNGSDEKNC 429
Cdd:cd00112    1 CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
 196-235 1.85e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 42.19  E-value: 1.85e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 564359957 196 CAYNQFQCLSRftkvyTCLPESLKCDGNIDCLDLGDEIDC 235
Cdd:cd00112    1 CPPNEFRCANG-----RCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
 394-426 6.13e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 40.69  E-value: 6.13e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 564359957   394 CQKEEFPCsRNGVCYPRSDRCNYQNHCPNGSDE 426
Cdd:smart00192   2 CPPGEFQC-DNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
394-429 1.84e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 39.54  E-value: 1.84e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 564359957  394 CQKEEFPCsRNGVCYPRSDRCNYQNHCPNGSDEKNC 429
Cdd:pfam00057   3 CSPNEFQC-GSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
 196-232 2.55e-04

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 38.77  E-value: 2.55e-04
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 564359957   196 CAYNQFQCLSRftkvyTCLPESLKCDGNIDCLDLGDE 232
Cdd:smart00192   2 CPPGEFQCDNG-----RCIPSSWVCDGVDDCGDGSDE 33
 
Name Accession Description Interval E-value
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 28-139 3.08e-32

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 120.98  E-value: 3.08e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564359957  28 CGETpeqIRGPT-GIITSPGWPSDYPAKINCSWLIRANPGEIITISFQDFDIQGSRRCTLDWLTI---ETYKNIESYRAC 103
Cdd:cd00041    1 CGGT---LTASTsGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSPNCSYDYLEIydgPSTSSPLLGRFC 77

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 564359957 104 GSTIPPPYISSQDHVWIRFHSDDSVSRKGFRLAYFS 139
Cdd:cd00041   78 GSTLPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113
CUB pfam00431
CUB domain;
28-137 6.20e-32

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 120.09  E-value: 6.20e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564359957   28 CGETpeqIRGPTGIITSPGWPSDYPAKINCSWLIRANPGEIITISFQDFDIQGSRRCTLDWLTI-----ETYKNIESYra 102
Cdd:pfam00431   1 CGGV---LTDSSGSISSPNYPNPYPPNKDCVWLIRAPPGFRVKLTFQDFELEDHDECGYDYVEIrdgpsASSPLLGRF-- 75

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 564359957  103 CGSTIPPPYISSQDHVWIRFHSDDSVSRKGFRLAY 137
Cdd:pfam00431  76 CGSGIPEDIVSSSNQMTIKFVSDASVQKRGFKATY 110
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 40-137 1.16e-28

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 110.17  E-value: 1.16e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564359957    40 GIITSPGWPSDYPAKINCSWLIRANPGEIITISFQDFDIQGSRRCTLDWLTI---ETYKNIESYRACGSTIPPPYISSQ- 115
Cdd:smart00042   1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSDNCEYDYVEIydgPSASSPLLGRFCGSEAPPPVISSSs 80

                           90       100
                   ....*....|....*....|..
gi 564359957   116 DHVWIRFHSDDSVSRKGFRLAY 137
Cdd:smart00042  81 NSLTLTFVSDSSVQKRGFSARY 102
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 248-352 1.28e-23

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 96.33  E-value: 1.28e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564359957 248 YGTFSSPNYPDFYPPGSNCTWLIDTGDHRKVILRFTDFKLDGTGY--GDYVKIYDGLEENPRKLLRVLTafdSHAPLTVV 325
Cdd:cd00041   10 SGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSPNcsYDYLEIYDGPSTSSPLLGRFCG---STLPPPII 86

                         90       100
                 ....*....|....*....|....*..
gi 564359957 326 SSSGQIRVHFCADKVNAARGFNATYQV 352
Cdd:cd00041   87 SSGNSLTVRFRSDSSVTGRGFKATYSA 113
CUB pfam00431
CUB domain;
240-350 7.52e-22

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 91.20  E-value: 7.52e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564359957  240 CGQWLKYFYGTFSSPNYPDFYPPGSNCTWLIDTGDHRKVILRFTDFKLDGTG--YGDYVKIYDGLEENPRKLLRvltaF- 316
Cdd:pfam00431   1 CGGVLTDSSGSISSPNYPNPYPPNKDCVWLIRAPPGFRVKLTFQDFELEDHDecGYDYVEIRDGPSASSPLLGR----Fc 76

                          90       100       110
                  ....*....|....*....|....*....|....
gi 564359957  317 DSHAPLTVVSSSGQIRVHFCADKVNAARGFNATY 350
Cdd:pfam00431  77 GSGIPEDIVSSSNQMTIKFVSDASVQKRGFKATY 110
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 249-350 2.78e-20

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 86.29  E-value: 2.78e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564359957   249 GTFSSPNYPDFYPPGSNCTWLIDTGDHRKVILRFTDFKLDGT---GYgDYVKIYDGLEENPRKLLRVLTafDSHAPLTVV 325
Cdd:smart00042   1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSdncEY-DYVEIYDGPSASSPLLGRFCG--SEAPPPVIS 77

                           90       100
                   ....*....|....*....|....*
gi 564359957   326 SSSGQIRVHFCADKVNAARGFNATY 350
Cdd:smart00042  78 SSSNSLTLTFVSDSSVQKRGFSARY 102
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
 432-466 6.54e-11

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 57.60  E-value: 6.54e-11
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 564359957 432 CQPGNFHCKNNRCVFESWVCDSQDDCGDGSDEESC 466
Cdd:cd00112    1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
 432-463 1.98e-10

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 56.10  E-value: 1.98e-10
                           10        20        30
                   ....*....|....*....|....*....|..
gi 564359957   432 CQPGNFHCKNNRCVFESWVCDSQDDCGDGSDE 463
Cdd:smart00192   2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
 147-181 2.05e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 56.06  E-value: 2.05e-10
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 564359957 147 CACDQFRCGNGKCIPEAWKCNSMDECGDSSDEEVC 181
Cdd:cd00112    1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
432-466 8.89e-10

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 54.56  E-value: 8.89e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 564359957  432 CQPGNFHCKNNRCVFESWVCDSQDDCGDGSDEESC 466
Cdd:pfam00057   3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
 147-178 9.66e-10

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 54.18  E-value: 9.66e-10
                           10        20        30
                   ....*....|....*....|....*....|..
gi 564359957   147 CACDQFRCGNGKCIPEAWKCNSMDECGDSSDE 178
Cdd:smart00192   2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
147-181 1.06e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 48.40  E-value: 1.06e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 564359957  147 CACDQFRCGNGKCIPEAWKCNSMDECGDSSDEEVC 181
Cdd:pfam00057   3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
 394-429 2.78e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.20  E-value: 2.78e-07
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 564359957 394 CQKEEFPCsRNGVCYPRSDRCNYQNHCPNGSDEKNC 429
Cdd:cd00112    1 CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
 196-235 1.85e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 42.19  E-value: 1.85e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 564359957 196 CAYNQFQCLSRftkvyTCLPESLKCDGNIDCLDLGDEIDC 235
Cdd:cd00112    1 CPPNEFRCANG-----RCIPSSWVCDGEDDCGDGSDEENC 35
PRKCSH-like pfam12999
Glucosidase II beta subunit-like; The sequences found in this family are similar to a region ...
 377-467 2.30e-05

Glucosidase II beta subunit-like; The sequences found in this family are similar to a region found in the beta-subunit of glucosidase II, which is also known as protein kinase C substrate 80K-H (PRKCSH). The enzyme catalyzes the sequential removal of two alpha-1,3-linked glucose residues in the second step of N-linked oligosaccharide processing. The beta subunit is required for the solubility and stability of the heterodimeric enzyme, and is involved in retaining the enzyme within the endoplasmic reticulum.


Pssm-ID: 372423 [Multi-domain]  Cd Length: 176  Bit Score: 45.55  E-value: 2.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564359957  377 DGYWHCPNgRDEINCTMCQKEEfpcsrngvcyprsDRCNyqnhCPNGSDEKNCFFCQPGNFHCKNNRcvFES-------- 448
Cdd:pfam12999  35 NGNWKCLN-HSEIKLSFDQVND-------------DYCD----CPDGSDEPGTNACSNGKFYCANEG--FIPgyipsfkv 94

                          90       100
                  ....*....|....*....|...
gi 564359957  449 --WVCDsQDDCGDGSDEES--CP 467
Cdd:pfam12999  95 ddGVCD-YDICCDGSDEALgkCP 116
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
 394-426 6.13e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 40.69  E-value: 6.13e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 564359957   394 CQKEEFPCsRNGVCYPRSDRCNYQNHCPNGSDE 426
Cdd:smart00192   2 CPPGEFQC-DNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
394-429 1.84e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 39.54  E-value: 1.84e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 564359957  394 CQKEEFPCsRNGVCYPRSDRCNYQNHCPNGSDEKNC 429
Cdd:pfam00057   3 CSPNEFQC-GSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
 196-232 2.55e-04

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 38.77  E-value: 2.55e-04
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 564359957   196 CAYNQFQCLSRftkvyTCLPESLKCDGNIDCLDLGDE 232
Cdd:smart00192   2 CPPGEFQCDNG-----RCIPSSWVCDGVDDCGDGSDE 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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