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Conserved domains on  [gi|564359490|ref|XP_006241487|]
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protein LLP homolog isoform X1 [Rattus norvegicus]

Protein Classification

Laps domain-containing protein( domain architecture ID 10562764)

Laps domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Laps pfam10169
Learning-associated protein; This is a family of 121-amino acid secretory proteins. Laps ...
 3-117 1.23e-32

Learning-associated protein; This is a family of 121-amino acid secretory proteins. Laps functions in the regulation of neuronal cell adhesion and/or movement and synapse attachment. Laps binds to the ApC/EBP (Aplysia CCAAT/enhancer binding protein) promoter and activates the transcription of ApC/EBP mRNA.


:

Pssm-ID: 462976  Cd Length: 124  Bit Score: 110.93  E-value: 1.23e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564359490    3 KSLRSKWKRKMRAEKRKKNAPRELNRLKSILKVDG--DALMKDVEEIATVVVPKHYQEKMQC----DVAVDDEKDDMKME 76
Cdd:pfam10169   1 KSLRSKWKRKMRAIKRKKNAPKELARLKKTLGLDGkgDVLMADIKEIATVVDAKKIKEKAKKvemeEIVSEEEKDEEKME 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 564359490   77 TEIKR--NKKTLLDQHGQYPVWMNQRQRKRLKAKREKKRGKSK 117
Cdd:pfam10169  81 VDKKRvyNKKTLLDQHGQYPVWMNQRKIKKLKAKREKKKKGKR 123
 
Name Accession Description Interval E-value
Laps pfam10169
Learning-associated protein; This is a family of 121-amino acid secretory proteins. Laps ...
 3-117 1.23e-32

Learning-associated protein; This is a family of 121-amino acid secretory proteins. Laps functions in the regulation of neuronal cell adhesion and/or movement and synapse attachment. Laps binds to the ApC/EBP (Aplysia CCAAT/enhancer binding protein) promoter and activates the transcription of ApC/EBP mRNA.


Pssm-ID: 462976  Cd Length: 124  Bit Score: 110.93  E-value: 1.23e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564359490    3 KSLRSKWKRKMRAEKRKKNAPRELNRLKSILKVDG--DALMKDVEEIATVVVPKHYQEKMQC----DVAVDDEKDDMKME 76
Cdd:pfam10169   1 KSLRSKWKRKMRAIKRKKNAPKELARLKKTLGLDGkgDVLMADIKEIATVVDAKKIKEKAKKvemeEIVSEEEKDEEKME 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 564359490   77 TEIKR--NKKTLLDQHGQYPVWMNQRQRKRLKAKREKKRGKSK 117
Cdd:pfam10169  81 VDKKRvyNKKTLLDQHGQYPVWMNQRKIKKLKAKREKKKKGKR 123
 
Name Accession Description Interval E-value
Laps pfam10169
Learning-associated protein; This is a family of 121-amino acid secretory proteins. Laps ...
 3-117 1.23e-32

Learning-associated protein; This is a family of 121-amino acid secretory proteins. Laps functions in the regulation of neuronal cell adhesion and/or movement and synapse attachment. Laps binds to the ApC/EBP (Aplysia CCAAT/enhancer binding protein) promoter and activates the transcription of ApC/EBP mRNA.


Pssm-ID: 462976  Cd Length: 124  Bit Score: 110.93  E-value: 1.23e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564359490    3 KSLRSKWKRKMRAEKRKKNAPRELNRLKSILKVDG--DALMKDVEEIATVVVPKHYQEKMQC----DVAVDDEKDDMKME 76
Cdd:pfam10169   1 KSLRSKWKRKMRAIKRKKNAPKELARLKKTLGLDGkgDVLMADIKEIATVVDAKKIKEKAKKvemeEIVSEEEKDEEKME 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 564359490   77 TEIKR--NKKTLLDQHGQYPVWMNQRQRKRLKAKREKKRGKSK 117
Cdd:pfam10169  81 VDKKRvyNKKTLLDQHGQYPVWMNQRKIKKLKAKREKKKKGKR 123
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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