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Conserved domains on  [gi|564355631|ref|XP_006240046|]
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Krueppel-like factor 11 isoform X1 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
KLF11_N cd21584
N-terminal domain of Kruppel-like factor 11; Kruppel-like factor 11 (KLF11; also known as ...
 40-383 5.30e-100

N-terminal domain of Kruppel-like factor 11; Kruppel-like factor 11 (KLF11; also known as Krueppel-like factor 11; Fetal Kruppel-like factor-1/FKLF-1; maturity-onset diabetes of the young 7/MODY7; TGFbeta Inducible Early Growth Response 2/TIEG2) is a protein that in humans is encoded by the KLF11 gene. KLF11 is involved in cell growth, apoptosis, cellular inflammation and differentiation, endometriosis, and cholesterol, prostaglandin, neurotransmitter, fat, and sugar metabolism. KLF9, KLF10, KLF11, KLF13, KLF14, and KLF16 share a conserved a-helical motif AA/VXXL that mediates their binding to Sin3A and their activities as transcriptional repressors. KLF11 belongs to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the N-terminal domain of KLF11.


:

Pssm-ID: 409242 [Multi-domain]  Cd Length: 217  Bit Score: 297.68  E-value: 5.30e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631  40 LEQTDIEAVEALVCMSSWGQRSQ------VRPLTPVSDSGDVTTavlMDTAAPDLPKDFHSFSTLCITPPQSPELMEPTG 113
Cdd:cd21584    1 LEQNDLEAVEALVCMSSWGQRSQkgdllkIRPLTPASDSCDSLT---LHPAAPELPKDFHSLSSLCMTPPHSPSFAEPST 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631 114 TPVPSqvinsqgcmatalppsptggprtlskgeppepssesSCRAVMTSVIRHTGESPAPtcfptgptqeqpasdsrggq 193
Cdd:cd21584   78 TAPPP------------------------------------PCRAMATSVIRHTADSSPP-------------------- 101

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631 194 dplldhlealqdtrladgllvtnlvscqpclhksgglfpidkgqqtvwptavqtclpknpesdlsrkttpfisVPVSSPP 273
Cdd:cd21584  102 -------------------------------------------------------------------------VPVPSPP 108

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631 274 VLCQMIPVAGQNGMLSAFLRPPtQLPAGTIKPILPQAASMSQPVFMGPPVPQGTVMLVLPQSTFPQPAACPSSVMAIGNT 353
Cdd:cd21584  109 VLCQMIPVSGQSGMISAFLQPP-ALSAGTVKPILPQTAPASQPLLVGSPVPQGTVMLVLPQASVPQPPQCPQTVMTLGNT 187

                        330       340       350
                 ....*....|....*....|....*....|
gi 564355631 354 KLLPLAPAPVFVASSQNCAPQVDFSRRRNY 383
Cdd:cd21584  188 KLLPLAPAPVFIPSGQSCAPQVDFSRRRNY 217
 
Name Accession Description Interval E-value
KLF11_N cd21584
N-terminal domain of Kruppel-like factor 11; Kruppel-like factor 11 (KLF11; also known as ...
 40-383 5.30e-100

N-terminal domain of Kruppel-like factor 11; Kruppel-like factor 11 (KLF11; also known as Krueppel-like factor 11; Fetal Kruppel-like factor-1/FKLF-1; maturity-onset diabetes of the young 7/MODY7; TGFbeta Inducible Early Growth Response 2/TIEG2) is a protein that in humans is encoded by the KLF11 gene. KLF11 is involved in cell growth, apoptosis, cellular inflammation and differentiation, endometriosis, and cholesterol, prostaglandin, neurotransmitter, fat, and sugar metabolism. KLF9, KLF10, KLF11, KLF13, KLF14, and KLF16 share a conserved a-helical motif AA/VXXL that mediates their binding to Sin3A and their activities as transcriptional repressors. KLF11 belongs to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the N-terminal domain of KLF11.


Pssm-ID: 409242 [Multi-domain]  Cd Length: 217  Bit Score: 297.68  E-value: 5.30e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631  40 LEQTDIEAVEALVCMSSWGQRSQ------VRPLTPVSDSGDVTTavlMDTAAPDLPKDFHSFSTLCITPPQSPELMEPTG 113
Cdd:cd21584    1 LEQNDLEAVEALVCMSSWGQRSQkgdllkIRPLTPASDSCDSLT---LHPAAPELPKDFHSLSSLCMTPPHSPSFAEPST 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631 114 TPVPSqvinsqgcmatalppsptggprtlskgeppepssesSCRAVMTSVIRHTGESPAPtcfptgptqeqpasdsrggq 193
Cdd:cd21584   78 TAPPP------------------------------------PCRAMATSVIRHTADSSPP-------------------- 101

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631 194 dplldhlealqdtrladgllvtnlvscqpclhksgglfpidkgqqtvwptavqtclpknpesdlsrkttpfisVPVSSPP 273
Cdd:cd21584  102 -------------------------------------------------------------------------VPVPSPP 108

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631 274 VLCQMIPVAGQNGMLSAFLRPPtQLPAGTIKPILPQAASMSQPVFMGPPVPQGTVMLVLPQSTFPQPAACPSSVMAIGNT 353
Cdd:cd21584  109 VLCQMIPVSGQSGMISAFLQPP-ALSAGTVKPILPQTAPASQPLLVGSPVPQGTVMLVLPQASVPQPPQCPQTVMTLGNT 187

                        330       340       350
                 ....*....|....*....|....*....|
gi 564355631 354 KLLPLAPAPVFVASSQNCAPQVDFSRRRNY 383
Cdd:cd21584  188 KLLPLAPAPVFIPSGQSCAPQVDFSRRRNY 217
SAP130_C pfam16014
Histone deacetylase complex subunit SAP130 C-terminus;
249-353 1.50e-03

Histone deacetylase complex subunit SAP130 C-terminus;


Pssm-ID: 464973 [Multi-domain]  Cd Length: 371  Bit Score: 40.69  E-value: 1.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631  249 LPKNPESDlSRKTTPFISVPVSsPPVLCQMIPVAGQNG-MLSAFLRPPTQLPAGTIKPILPQAASMSQP----------V 317
Cdd:pfam16014  11 LRKKPATE-GAKPKPDIHVAVA-PPVTVAVEALPGQNSeQQTASASPPSQHPAQAIPTILAPAAPPSQPsvvlstlpaaM 88

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 564355631  318 FMGPPVPQGTVMLVLPQStfpQPAACPSSVMAIGNT 353
Cdd:pfam16014  89 AVTPPIPASMANVVAPPT---QPAASSTAACAVSSV 121
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
294-382 2.46e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 40.14  E-value: 2.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631 294 PPTQLPAGTIKPILPQAASMSQPVFMGPPVPQGTVMLVLPQSTFPQPAACPSSVMAIGNTKLLPLAPAPVFVASSQNCAP 373
Cdd:PRK14971 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRP 449


                 ....*....
gi 564355631 374 QVDFSRRRN 382
Cdd:PRK14971 450 AQFKEEKKI 458
 
Name Accession Description Interval E-value
KLF11_N cd21584
N-terminal domain of Kruppel-like factor 11; Kruppel-like factor 11 (KLF11; also known as ...
 40-383 5.30e-100

N-terminal domain of Kruppel-like factor 11; Kruppel-like factor 11 (KLF11; also known as Krueppel-like factor 11; Fetal Kruppel-like factor-1/FKLF-1; maturity-onset diabetes of the young 7/MODY7; TGFbeta Inducible Early Growth Response 2/TIEG2) is a protein that in humans is encoded by the KLF11 gene. KLF11 is involved in cell growth, apoptosis, cellular inflammation and differentiation, endometriosis, and cholesterol, prostaglandin, neurotransmitter, fat, and sugar metabolism. KLF9, KLF10, KLF11, KLF13, KLF14, and KLF16 share a conserved a-helical motif AA/VXXL that mediates their binding to Sin3A and their activities as transcriptional repressors. KLF11 belongs to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the N-terminal domain of KLF11.


Pssm-ID: 409242 [Multi-domain]  Cd Length: 217  Bit Score: 297.68  E-value: 5.30e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631  40 LEQTDIEAVEALVCMSSWGQRSQ------VRPLTPVSDSGDVTTavlMDTAAPDLPKDFHSFSTLCITPPQSPELMEPTG 113
Cdd:cd21584    1 LEQNDLEAVEALVCMSSWGQRSQkgdllkIRPLTPASDSCDSLT---LHPAAPELPKDFHSLSSLCMTPPHSPSFAEPST 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631 114 TPVPSqvinsqgcmatalppsptggprtlskgeppepssesSCRAVMTSVIRHTGESPAPtcfptgptqeqpasdsrggq 193
Cdd:cd21584   78 TAPPP------------------------------------PCRAMATSVIRHTADSSPP-------------------- 101

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631 194 dplldhlealqdtrladgllvtnlvscqpclhksgglfpidkgqqtvwptavqtclpknpesdlsrkttpfisVPVSSPP 273
Cdd:cd21584  102 -------------------------------------------------------------------------VPVPSPP 108

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631 274 VLCQMIPVAGQNGMLSAFLRPPtQLPAGTIKPILPQAASMSQPVFMGPPVPQGTVMLVLPQSTFPQPAACPSSVMAIGNT 353
Cdd:cd21584  109 VLCQMIPVSGQSGMISAFLQPP-ALSAGTVKPILPQTAPASQPLLVGSPVPQGTVMLVLPQASVPQPPQCPQTVMTLGNT 187

                        330       340       350
                 ....*....|....*....|....*....|
gi 564355631 354 KLLPLAPAPVFVASSQNCAPQVDFSRRRNY 383
Cdd:cd21584  188 KLLPLAPAPVFIPSGQSCAPQVDFSRRRNY 217
KLF10_11_N cd21974
N-terminal domain of Kruppel-like factor (KLF) 10, KLF11, and similar proteins; This subfamily ...
 41-383 3.02e-74

N-terminal domain of Kruppel-like factor (KLF) 10, KLF11, and similar proteins; This subfamily is composed of Kruppel-like factor or Krueppel-like factor (KLF) 10, KLF11, and similar proteins. KLF10 was first identified in human osteoblasts and plays a role in mediating estrogen (E2) signaling in bone and skeletal homeostasis and a regulatory role in tumor formation and metastasis. KLF11 is involved in cell growth, apoptosis, cellular inflammation and differentiation, endometriosis, and cholesterol, prostaglandin, neurotransmitter, fat, and sugar metabolism. KLF9, KLF10, KLF11, KLF13, KLF14, and KLF16 share a conserved a-helical motif AA/VXXL that mediates their binding to Sin3A and their activities as transcriptional repressors. KLF10/11 belong to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the N-terminal domain of KLF10, KLF11, and similar proteins.


Pssm-ID: 409243 [Multi-domain]  Cd Length: 229  Bit Score: 232.52  E-value: 3.02e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631  41 EQTDIEAVEALVCMSSWGQRSQV-----RPLTPVSDSGDvttavlmDTAAPDLPKDFHSFSTLCITPPQSPELMEPTGTP 115
Cdd:cd21974    1 EQGDLEAVEALVSMSSWWKRRQKrlrkpRPLTPSSDSSD-------EDDAPESPKDFHSLSSLCMTPPYSPPFFEASHSP 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631 116 VPsqvinsqgcmATALPPSPTGGPRTLSKGEPPEPSSESsCRAVMTSVIRHTGESPaptcfptgptqeqpasdsrggqdp 195
Cdd:cd21974   74 SV----------ASLHPPSAASSQPPPEPESSEPPAASP-QRAQATSVIRHTADPV------------------------ 118

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631 196 lldhlealqdtrladgllvtnlvscqpclhksgglfpidkgqqtvwptavqtclpknpesdlsrkttpfisvPVSSPPVL 275
Cdd:cd21974  119 ------------------------------------------------------------------------PVSPPPVL 126

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631 276 CQMIPVAGQNGMLSAFLRPPTQLPAGTIKPILPQAasmsQPVFMGPPVPQGTVMLVLPQSTFPQPAAcPSSVMAIGNTKL 355
Cdd:cd21974  127 CQMLPVSSSSGVIVAFLKAPQQPSPQPQKPALPQP----QVVLVGGQVPQGPVMLVVPQPAVPQPYV-QPTVVTPGGTKL 201

                        330       340
                 ....*....|....*....|....*...
gi 564355631 356 LPLAPAPVFVASSQNCAPQVDFSRRRNY 383
Cdd:cd21974  202 LPIAPAPGFIPSGQSSAPQPDFSRRRNH 229
KLF10_N cd21572
N-terminal domain of Kruppel-like factor 10; Kruppel-like factor 10 (KLF10; also known as ...
 40-382 2.03e-25

N-terminal domain of Kruppel-like factor 10; Kruppel-like factor 10 (KLF10; also known as Krueppel-like factor 10; early growth response(EGR)-alpha/EGRA; TGFbeta inducible early gene-1/TIEG1) is a protein that in humans is encoded by the KLF10 gene. KLF10 was first identified in human osteoblasts and plays a role in mediating estrogen (E2) signaling in bone and skeletal homeostasis and a regulatory role in tumor formation and metastasis. It may also play a role in adipocyte differentiation and adipose tissue function. KLF9, KLF10, KLF11, KLF13, KLF14, and KLF16 share a conserved a-helical motif AA/VXXL that mediates their binding to Sin3A and their activities as transcriptional repressors. KLF10 belongs to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the N-terminal domain of KLF10.


Pssm-ID: 409241 [Multi-domain]  Cd Length: 245  Bit Score: 103.91  E-value: 2.03e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631  40 LEQTDIEAVEALVCMSS-WGQRS----QVRPLTPVSDSGDvttavlmDTAAPdLPKDFHSFSTLCITPPQSPELMEPTGT 114
Cdd:cd21572    1 MGAGDMEAVEALMSMTKhWKTRSfrlrHFRPLTPSSDSSE-------DDDLP-SPADFHDSPPFCMTPPYSPPHFEATHP 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631 115 PvpsqvinsqgcmaTALPPSPTGGPRTLSKGEPPEPSSESScRAVMTSVIRHTgespaptcfptgptqeqpasdsrggqd 194
Cdd:cd21572   73 P-------------SAATLHPPAAQPPEEQHLSAETAASQQ-RFQCTSVIRHT--------------------------- 111

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631 195 plldhlealqdtrlADGLLVtnlvSCQPClhksgglfpidkgqqtvwptavqtclpknPESDLSRKTTPFISVPVSSPPV 274
Cdd:cd21572  112 --------------ADAQPC----SCSSC-----------------------------PSSPSVVPSVPAGVAGVSPVPV 144

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631 275 LCQMIPVAGQNGMLSAFLRPPTQLPagtikpilPQAASMSQPVFMGPPVPQGTVMLVLPQSTFPQPAACPSSVMAIGnTK 354
Cdd:cd21572  145 YCQILPVSSSSTTVVAAQAPLPQPQ--------QQAASPAQVFLMGGQVPKGPVMFLVPQPVVPTLYVQPTLVTPGG-TK 215

                        330       340
                 ....*....|....*....|....*....
gi 564355631 355 LLPLAPAPVFVASSQNC-APQVDFSRRRN 382
Cdd:cd21572  216 LAAIAPAPGHTPSEQRKsPPQPEVSRVRS 244
SAP130_C pfam16014
Histone deacetylase complex subunit SAP130 C-terminus;
249-353 1.50e-03

Histone deacetylase complex subunit SAP130 C-terminus;


Pssm-ID: 464973 [Multi-domain]  Cd Length: 371  Bit Score: 40.69  E-value: 1.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631  249 LPKNPESDlSRKTTPFISVPVSsPPVLCQMIPVAGQNG-MLSAFLRPPTQLPAGTIKPILPQAASMSQP----------V 317
Cdd:pfam16014  11 LRKKPATE-GAKPKPDIHVAVA-PPVTVAVEALPGQNSeQQTASASPPSQHPAQAIPTILAPAAPPSQPsvvlstlpaaM 88

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 564355631  318 FMGPPVPQGTVMLVLPQStfpQPAACPSSVMAIGNT 353
Cdd:pfam16014  89 AVTPPIPASMANVVAPPT---QPAASSTAACAVSSV 121
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
294-382 2.46e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 40.14  E-value: 2.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355631 294 PPTQLPAGTIKPILPQAASMSQPVFMGPPVPQGTVMLVLPQSTFPQPAACPSSVMAIGNTKLLPLAPAPVFVASSQNCAP 373
Cdd:PRK14971 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRP 449


                 ....*....
gi 564355631 374 QVDFSRRRN 382
Cdd:PRK14971 450 AQFKEEKKI 458
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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