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Conserved domains on  [gi|564353572|ref|XP_006239245|]
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serine/arginine repetitive matrix protein 1 isoform X2 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.87e-38

PWI domain;


:

Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 136.48  E-value: 3.87e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572   46 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNgKNAREFMGELWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
623-818 2.55e-07

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK12323:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 700  Bit Score: 54.50  E-value: 2.55e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572 623 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP---PKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRH 699
Cdd:PRK12323 385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVaaaPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP 464

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572 700 SPSPRPRAPQTSSPPPVRRGASASPqgrqSPSPSTRPirrvsrtPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKK 779
Cdd:PRK12323 465 AAAGPRPVAAAAAAAPARAAPAAAP----APADDDPP-------PWEELPPEFASPAPAQPDAAPAGWVAESIPDPATAD 533

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 564353572 780 PPAPPSpvqSQSPSTNWSPAAPAKKAKSPTPSPSPARNS 818
Cdd:PRK12323 534 PDDAFE---TLAPAPAAAPAPRAAAATEPVVAPRPPRAS 569
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
 378-725 6.78e-07

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 53.64  E-value: 6.78e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  378 SPPRKTRRLSPSASPPRRRHRPSSPATPPPktrhSPTPQQSNRARKSRVSVSPGRTSGKVTkhkGTEKRESPSPAPKPRK 457
Cdd:PHA03307   99 SPAREGSPTPPGPSSPDPPPPTPPPASPPP----SPAPDLSEMLRPVGSPGPPPAASPPAA---GASPAAVASDAASSRQ 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  458 VEL-----SESEEDKGSKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRShvkngevgRRRRHSPSRSASPSPR 532
Cdd:PHA03307  172 AALplsspEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRS--------AADDAGASSSDSSSSE 243

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  533 KRQKETSPRMQMGKRWQSPVTKSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRR 612
Cdd:PHA03307  244 SSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRE 323

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  613 YSPPIQRRYSPSPppkrRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSskhrKGSSPGRSTREARS 692
Cdd:PHA03307  324 SSSSSTSSSSESS----RGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAAS----AGRPTRRRARAAVA 395

                         330       340       350
                  ....*....|....*....|....*....|...
gi 564353572  693 PQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQ 725
Cdd:PHA03307  396 GRARRRDATGRFPAGRPRPSPLDAGAASGAFYA 428
 
Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.87e-38

PWI domain;


Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 136.48  E-value: 3.87e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572   46 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNgKNAREFMGELWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PWI smart00311
PWI, domain in splicing factors;
40-115 1.98e-28

PWI, domain in splicing factors;


Pssm-ID: 214609 [Multi-domain]  Cd Length: 74  Bit Score: 108.97  E-value: 1.98e-28
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564353572    40 MSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEV-KNPDSKMMQINLTGFLngkNAREFMGELWPLLLSAQEN 115
Cdd:smart00311   1 LSKLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQhKGPQAKLLQINLTGFE---DAEEFVDKLWRLLIFELKN 74
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
623-818 2.55e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 54.50  E-value: 2.55e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572 623 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP---PKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRH 699
Cdd:PRK12323 385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVaaaPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP 464

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572 700 SPSPRPRAPQTSSPPPVRRGASASPqgrqSPSPSTRPirrvsrtPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKK 779
Cdd:PRK12323 465 AAAGPRPVAAAAAAAPARAAPAAAP----APADDDPP-------PWEELPPEFASPAPAQPDAAPAGWVAESIPDPATAD 533

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 564353572 780 PPAPPSpvqSQSPSTNWSPAAPAKKAKSPTPSPSPARNS 818
Cdd:PRK12323 534 PDDAFE---TLAPAPAAAPAPRAAAATEPVVAPRPPRAS 569
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 378-725 6.78e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 53.64  E-value: 6.78e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  378 SPPRKTRRLSPSASPPRRRHRPSSPATPPPktrhSPTPQQSNRARKSRVSVSPGRTSGKVTkhkGTEKRESPSPAPKPRK 457
Cdd:PHA03307   99 SPAREGSPTPPGPSSPDPPPPTPPPASPPP----SPAPDLSEMLRPVGSPGPPPAASPPAA---GASPAAVASDAASSRQ 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  458 VEL-----SESEEDKGSKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRShvkngevgRRRRHSPSRSASPSPR 532
Cdd:PHA03307  172 AALplsspEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRS--------AADDAGASSSDSSSSE 243

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  533 KRQKETSPRMQMGKRWQSPVTKSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRR 612
Cdd:PHA03307  244 SSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRE 323

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  613 YSPPIQRRYSPSPppkrRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSskhrKGSSPGRSTREARS 692
Cdd:PHA03307  324 SSSSSTSSSSESS----RGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAAS----AGRPTRRRARAAVA 395

                         330       340       350
                  ....*....|....*....|....*....|...
gi 564353572  693 PQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQ 725
Cdd:PHA03307  396 GRARRRDATGRFPAGRPRPSPLDAGAASGAFYA 428
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
625-758 1.04e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 42.34  E-value: 1.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  625 PPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPR 704
Cdd:pfam05539 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSP 247

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 564353572  705 PRAPQTSSPPPVRRGASA--SPQGRQSPSPS-TRPIRRVSRTPEPKKIKKAASPSPQ 758
Cdd:pfam05539 248 QHPPSTTSQDQSTTGDGQehTQRRKTPPATSnRRSPHSTATPPPTTKRQETGRPTPR 304
 
Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.87e-38

PWI domain;


Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 136.48  E-value: 3.87e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572   46 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNgKNAREFMGELWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PWI smart00311
PWI, domain in splicing factors;
40-115 1.98e-28

PWI, domain in splicing factors;


Pssm-ID: 214609 [Multi-domain]  Cd Length: 74  Bit Score: 108.97  E-value: 1.98e-28
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564353572    40 MSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEV-KNPDSKMMQINLTGFLngkNAREFMGELWPLLLSAQEN 115
Cdd:smart00311   1 LSKLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQhKGPQAKLLQINLTGFE---DAEEFVDKLWRLLIFELKN 74
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
623-818 2.55e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 54.50  E-value: 2.55e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572 623 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP---PKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRH 699
Cdd:PRK12323 385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVaaaPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP 464

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572 700 SPSPRPRAPQTSSPPPVRRGASASPqgrqSPSPSTRPirrvsrtPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKK 779
Cdd:PRK12323 465 AAAGPRPVAAAAAAAPARAAPAAAP----APADDDPP-------PWEELPPEFASPAPAQPDAAPAGWVAESIPDPATAD 533

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 564353572 780 PPAPPSpvqSQSPSTNWSPAAPAKKAKSPTPSPSPARNS 818
Cdd:PRK12323 534 PDDAFE---TLAPAPAAAPAPRAAAATEPVVAPRPPRAS 569
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 620-815 4.36e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 53.84  E-value: 4.36e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572 620 RYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRH 699
Cdd:PRK07764 585 EAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASD 664

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572 700 SPSPRPR----APQTSSPPPVRRGASASPQGRQSPSPSTRPirRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEP 775
Cdd:PRK07764 665 GGDGWPAkaggAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP--AATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLP 742

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 564353572 776 TAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPA 815
Cdd:PRK07764 743 PEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 378-725 6.78e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 53.64  E-value: 6.78e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  378 SPPRKTRRLSPSASPPRRRHRPSSPATPPPktrhSPTPQQSNRARKSRVSVSPGRTSGKVTkhkGTEKRESPSPAPKPRK 457
Cdd:PHA03307   99 SPAREGSPTPPGPSSPDPPPPTPPPASPPP----SPAPDLSEMLRPVGSPGPPPAASPPAA---GASPAAVASDAASSRQ 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  458 VEL-----SESEEDKGSKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRShvkngevgRRRRHSPSRSASPSPR 532
Cdd:PHA03307  172 AALplsspEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRS--------AADDAGASSSDSSSSE 243

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  533 KRQKETSPRMQMGKRWQSPVTKSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRR 612
Cdd:PHA03307  244 SSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRE 323

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  613 YSPPIQRRYSPSPppkrRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSskhrKGSSPGRSTREARS 692
Cdd:PHA03307  324 SSSSSTSSSSESS----RGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAAS----AGRPTRRRARAAVA 395

                         330       340       350
                  ....*....|....*....|....*....|...
gi 564353572  693 PQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQ 725
Cdd:PHA03307  396 GRARRRDATGRFPAGRPRPSPLDAGAASGAFYA 428
PHA03247 PHA03247
large tegument protein UL36; Provisional
 399-822 8.49e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.94  E-value: 8.49e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  399 PSSPATPPPKTRHS-PTPQQSNR-------ARKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPrkvelseseedkgsk 470
Cdd:PHA03247 2554 PLPPAAPPAAPDRSvPPPRPAPRpsepavtSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLP--------------- 2618

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  471 mAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRShvknGEVGRRRRHSPSRSASPSPRKRQKETSPRMQMGKRWQS 550
Cdd:PHA03247 2619 -PDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDD----PAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVG 2693

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  551 PVTKSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSprrysppiqrrySPSPPPKRR 630
Cdd:PHA03247 2694 SLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPG------------GPARPARPP 2761

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  631 TASPPPPPKRRASPSPPPKRRVShSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRST-REARSPQPNKRHSPSPRPRAPQ 709
Cdd:PHA03247 2762 TTAGPPAPAPPAAPAAGPPRRLT-RPAVASLSESRESLPSPWDPADPPAAVLAPAAAlPPAASPAGPLPPPTSAQPTAPP 2840

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  710 TSSPP---------------PVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSgsPE 774
Cdd:PHA03247 2841 PPPGPpppslplggsvapggDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPP--PQ 2918

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*...
gi 564353572  775 PTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAkSPTPSPSPARNSDQEG 822
Cdd:PHA03247 2919 PQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP-AGAGEPSGAVPQPWLG 2965
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 585-818 1.02e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 49.78  E-value: 1.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  585 RRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPP 664
Cdd:PHA03307  146 PPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPG 225

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  665 VTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSS---PPPVRRGASASPQGRQSPSPSTRPIRRVS 741
Cdd:PHA03307  226 RSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASgwnGPSSRPGPASSSSSPRERSPSPSPSSPGS 305

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564353572  742 RTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARNS 818
Cdd:PHA03307  306 GPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASA 382
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 680-904 5.65e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.90  E-value: 5.65e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572 680 GSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIrrvsrTPEPKKIKKAASPSPQS 759
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV-----AAPEHHPKHVAVPDASD 664

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572 760 VRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARNSDQEGGGKKKKKKKDKKHKKDK 839
Cdd:PRK07764 665 GGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPE 744

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564353572 840 KHKKHKKHKKEKAVAVATPAPAAPAAVSAAATPSAQEEPA----AAPEPRKETESEAEDDNLDDLERHL 904
Cdd:PRK07764 745 PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEmaedDAPSMDDEDRRDAEEVAMELLEEEL 813
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 578-819 7.94e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 46.70  E-value: 7.94e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  578 PPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPpiqrrysPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP 657
Cdd:PHA03307   77 TEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSP-------DPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPA 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  658 PKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPI 737
Cdd:PHA03307  150 ASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAA 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  738 RRVSRTPEpkkikkAASPSPQSVRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARN 817
Cdd:PHA03307  230 DDAGASSS------DSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSP 303


                  ..
gi 564353572  818 SD 819
Cdd:PHA03307  304 GS 305
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
622-723 3.05e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.48  E-value: 3.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572 622 SPSPPPKRRTASPPPPPKRRASPSPPPKR-------RVSHSPPPKQRSPPVTKRRSP----------SLSSKHRKGSSPG 684
Cdd:PRK12323 455 AAAPAAAARPAAAGPRPVAAAAAAAPARAapaaapaPADDDPPPWEELPPEFASPAPaqpdaapagwVAESIPDPATADP 534

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 564353572 685 RSTREARSPQPNKrhSPSPRPRAPQTSSPPPVRRGASAS 723
Cdd:PRK12323 535 DDAFETLAPAPAA--APAPRAAAATEPVVAPRPPRASAS 571
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 618-736 4.58e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.39  E-value: 4.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  618 QRRYSPSPPPKRRTASPPPPPKRRASPSPP------PKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREAR 691
Cdd:PHA03307  781 QRGAGSSPPVRAEAAFRRPGRLRRSGPAADaasrtaSKRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAA 860

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 564353572  692 SPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRP 736
Cdd:PHA03307  861 AGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRP 905
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 620-745 4.92e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.93  E-value: 4.92e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572 620 RYSPSPPPKRRTASPPPPPKRRASPSPPPKR---RVSHSPPPKQRSPPVTkrrSPSLSSKHRKGSSPGRSTREARSPQPN 696
Cdd:PRK14951 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAaaaPAPAAAPAAAASAPAA---PPAAAPPAPVAAPAAAAPAAAPAAAPA 443

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 564353572 697 KRH-SPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPE 745
Cdd:PRK14951 444 AVAlAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
625-758 1.04e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 42.34  E-value: 1.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  625 PPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPR 704
Cdd:pfam05539 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSP 247

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 564353572  705 PRAPQTSSPPPVRRGASA--SPQGRQSPSPS-TRPIRRVSRTPEPKKIKKAASPSPQ 758
Cdd:pfam05539 248 QHPPSTTSQDQSTTGDGQehTQRRKTPPATSnRRSPHSTATPPPTTKRQETGRPTPR 304
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 618-726 1.90e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.90  E-value: 1.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572 618 QRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRvshsPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNK 697
Cdd:PRK07764 401 AAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPA----PAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEP 476

                         90       100
                 ....*....|....*....|....*....
gi 564353572 698 RHSPSPRPRAPQTSSPPPVRRGASASPQG 726
Cdd:PRK07764 477 TAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 569-756 2.98e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.70  E-value: 2.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  569 RRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASP---- 644
Cdd:PHA03307  209 RSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPasss 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  645 ------SPPPKRRVSHSPPPKQRSPPVTKR-RSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPvR 717
Cdd:PHA03307  289 ssprerSPSPSPSSPGSGPAPSSPRASSSSsSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPR-K 367

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 564353572  718 RGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPS 756
Cdd:PHA03307  368 RPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGR 406
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 624-757 3.25e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 41.39  E-value: 3.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572 624 SPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPK-QRSPPVTKRRSPSLSSKHRKgsspgrSTREARSPQPNKRHSPS 702
Cdd:PRK07994 371 PPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASApQQAPAVPLPETTSQLLAARQ------QLQRAQGATKAKKSEPA 444

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 564353572 703 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSP 757
Cdd:PRK07994 445 AASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKA 499
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 622-733 5.05e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.74  E-value: 5.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572 622 SPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSP 701
Cdd:PRK07764 393 APAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAA 472

                         90       100       110
                 ....*....|....*....|....*....|..
gi 564353572 702 SPRPRAPQTSSPPPVRRGAsASPQGRQSPSPS 733
Cdd:PRK07764 473 APEPTAAPAPAPPAAPAPA-AAPAAPAAPAAP 503
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
621-823 6.03e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.60  E-value: 6.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572 621 YSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTkrrspslsskhrkGSSPGRSTREARSPQPNKRHS 700
Cdd:PRK07003 358 FEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVT-------------GAAGAALAPKAAAAAAATRAE 424

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572 701 PSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKP 780
Cdd:PRK07003 425 APPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATP 504

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 564353572 781 PAPPSPVQSQSPSTNWSPAAPAKKA-KSPTPSPSPARNSDQEGG 823
Cdd:PRK07003 505 AAVPDARAPAAASREDAPAAAAPPApEARPPTPAAAAPAARAGG 548
PHA03247 PHA03247
large tegument protein UL36; Provisional
 617-814 6.10e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 6.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  617 IQRRYSPSPPPKRRTASPPPPP--KRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPS-LSSKHRKGSSPGRSTREARSP 693
Cdd:PHA03247  238 VERRVVISHPLRGDIAAPAPPPvvGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDgVWGAALAGAPLALPAPPDPPP 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  694 QPNKRH--------------SPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKK-IKKAASPSPQ 758
Cdd:PHA03247  318 PAPAGDaeeeddedgamevvSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRsARHAATPFAR 397

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 564353572  759 SVRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNwSPAAPAKKAKSPTPSPSP 814
Cdd:PHA03247  398 GPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATP-LPSAEPGSDDGPAPPPER 452
Gag_spuma pfam03276
Spumavirus gag protein;
623-731 6.22e-03

Spumavirus gag protein;


Pssm-ID: 460872 [Multi-domain]  Cd Length: 614  Bit Score: 40.12  E-value: 6.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572  623 PSPPPKRRTASPPPPPK-------RRASPSPPPKRRVSHSPPPKQRSPPVTKRRSpslSSKHRKGSSPGRSTREARSPQP 695
Cdd:pfam03276 207 PAIPGIHARAPPGNIARslgddimPSLGDAGMPQPRFAFHPGNPFAEAEGHPFAE---AEGERPRDIPRAPRIDAPSAPA 283

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 564353572  696 NKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPS 731
Cdd:pfam03276 284 IPAIQPIAPPMIPPIGAPIPIPHGASIPGEHIRNPR 319
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 623-736 7.46e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 7.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353572 623 PSPPPKRRTASPPPPPKRRASPSPPpkrRVSHSPPPKQRSPPVTKRRSPSLSSkhrkgsSPGRSTREARSPQPNKRHSPS 702
Cdd:PRK07764 399 PSAAAAAPAAAPAPAAAAPAAAAAP---APAAAPQPAPAPAPAPAPPSPAGNA------PAGGAPSPPPAAAPSAQPAPA 469

                         90       100       110
                 ....*....|....*....|....*....|....
gi 564353572 703 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRP 736
Cdd:PRK07764 470 PAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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