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Conserved domains on  [gi|564353570|ref|XP_006239244|]
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serine/arginine repetitive matrix protein 1 isoform X1 [Rattus norvegicus]

Protein Classification

PWI domain-containing protein( domain architecture ID 10478549)

PWI domain-containing protein may function as a splicing factor; similar to Homo sapiens serine/arginine repetitive matrix protein 1 that is involved in numerous pre-mRNA processing events

CATH:  1.20.1390.10
Gene Ontology:  GO:0006397|GO:0003676
PubMed:  10322432|12600940
SCOP:  4000671

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.88e-38

PWI domain;


:

Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 136.48  E-value: 3.88e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570   46 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNgKNAREFMGELWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 389-817 2.21e-07

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 55.33  E-value: 2.21e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  389 SASPPRRRHRPSSPATPPPKTRHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKG 468
Cdd:PHA03247 2567 SVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTV 2646

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  469 SKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGeVGRRRRHSPSRSASPSPRKRQKETSPRMQM---- 544
Cdd:PHA03247 2647 PPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPT-VGSLTSLADPPPPPPTPEPAPHALVSATPLppgp 2725

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  545 -GKRWQSPVTKSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYS 623
Cdd:PHA03247 2726 aAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPA 2805

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  624 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPvtkrrsPSLSSKhrKGSSPGRSTRearspqpnKRHSPS 703
Cdd:PHA03247 2806 DPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP------PSLPLG--GSVAPGGDVR--------RRPPSR 2869

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  704 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPA 783
Cdd:PHA03247 2870 SPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP 2949

                         410       420       430
                  ....*....|....*....|....*....|....*..
gi 564353570  784 PPSPVQSQSPSTNWSPAAPAKKAKSP---TPSPSPAR 817
Cdd:PHA03247 2950 AGAGEPSGAVPQPWLGALVPGRVAVPrfrVPQPAPSR 2986
 
Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.88e-38

PWI domain;


Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 136.48  E-value: 3.88e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570   46 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNgKNAREFMGELWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PWI smart00311
PWI, domain in splicing factors;
40-115 1.99e-28

PWI, domain in splicing factors;


Pssm-ID: 214609 [Multi-domain]  Cd Length: 74  Bit Score: 108.97  E-value: 1.99e-28
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564353570    40 MSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEV-KNPDSKMMQINLTGFLngkNAREFMGELWPLLLSAQEN 115
Cdd:smart00311   1 LSKLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQhKGPQAKLLQINLTGFE---DAEEFVDKLWRLLIFELKN 74
PHA03247 PHA03247
large tegument protein UL36; Provisional
 389-817 2.21e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 55.33  E-value: 2.21e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  389 SASPPRRRHRPSSPATPPPKTRHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKG 468
Cdd:PHA03247 2567 SVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTV 2646

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  469 SKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGeVGRRRRHSPSRSASPSPRKRQKETSPRMQM---- 544
Cdd:PHA03247 2647 PPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPT-VGSLTSLADPPPPPPTPEPAPHALVSATPLppgp 2725

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  545 -GKRWQSPVTKSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYS 623
Cdd:PHA03247 2726 aAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPA 2805

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  624 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPvtkrrsPSLSSKhrKGSSPGRSTRearspqpnKRHSPS 703
Cdd:PHA03247 2806 DPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP------PSLPLG--GSVAPGGDVR--------RRPPSR 2869

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  704 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPA 783
Cdd:PHA03247 2870 SPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP 2949

                         410       420       430
                  ....*....|....*....|....*....|....*..
gi 564353570  784 PPSPVQSQSPSTNWSPAAPAKKAKSP---TPSPSPAR 817
Cdd:PHA03247 2950 AGAGEPSGAVPQPWLGALVPGRVAVPrfrVPQPAPSR 2986
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
626-759 1.04e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 42.34  E-value: 1.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  626 PPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPR 705
Cdd:pfam05539 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSP 247

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 564353570  706 PRAPQTSSPPPVRRGASA--SPQGRQSPSPS-TRPIRRVSRTPEPKKIKKAASPSPQ 759
Cdd:pfam05539 248 QHPPSTTSQDQSTTGDGQehTQRRKTPPATSnRRSPHSTATPPPTTKRQETGRPTPR 304
 
Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.88e-38

PWI domain;


Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 136.48  E-value: 3.88e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570   46 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNgKNAREFMGELWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PWI smart00311
PWI, domain in splicing factors;
40-115 1.99e-28

PWI, domain in splicing factors;


Pssm-ID: 214609 [Multi-domain]  Cd Length: 74  Bit Score: 108.97  E-value: 1.99e-28
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564353570    40 MSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEV-KNPDSKMMQINLTGFLngkNAREFMGELWPLLLSAQEN 115
Cdd:smart00311   1 LSKLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQhKGPQAKLLQINLTGFE---DAEEFVDKLWRLLIFELKN 74
PHA03247 PHA03247
large tegument protein UL36; Provisional
 389-817 2.21e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 55.33  E-value: 2.21e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  389 SASPPRRRHRPSSPATPPPKTRHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKG 468
Cdd:PHA03247 2567 SVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTV 2646

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  469 SKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGeVGRRRRHSPSRSASPSPRKRQKETSPRMQM---- 544
Cdd:PHA03247 2647 PPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPT-VGSLTSLADPPPPPPTPEPAPHALVSATPLppgp 2725

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  545 -GKRWQSPVTKSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYS 623
Cdd:PHA03247 2726 aAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPA 2805

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  624 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPvtkrrsPSLSSKhrKGSSPGRSTRearspqpnKRHSPS 703
Cdd:PHA03247 2806 DPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP------PSLPLG--GSVAPGGDVR--------RRPPSR 2869

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  704 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPA 783
Cdd:PHA03247 2870 SPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP 2949

                         410       420       430
                  ....*....|....*....|....*....|....*..
gi 564353570  784 PPSPVQSQSPSTNWSPAAPAKKAKSP---TPSPSPAR 817
Cdd:PHA03247 2950 AGAGEPSGAVPQPWLGALVPGRVAVPrfrVPQPAPSR 2986
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
624-819 2.55e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 54.50  E-value: 2.55e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570 624 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP---PKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRH 700
Cdd:PRK12323 385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVaaaPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP 464

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570 701 SPSPRPRAPQTSSPPPVRRGASASPqgrqSPSPSTRPirrvsrtPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKK 780
Cdd:PRK12323 465 AAAGPRPVAAAAAAAPARAAPAAAP----APADDDPP-------PWEELPPEFASPAPAQPDAAPAGWVAESIPDPATAD 533

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 564353570 781 PPAPPSpvqSQSPSTNWSPAAPAKKAKSPTPSPSPARNS 819
Cdd:PRK12323 534 PDDAFE---TLAPAPAAAPAPRAAAATEPVVAPRPPRAS 569
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 621-816 4.37e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 53.84  E-value: 4.37e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570 621 RYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRH 700
Cdd:PRK07764 585 EAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASD 664

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570 701 SPSPRPR----APQTSSPPPVRRGASASPQGRQSPSPSTRPirRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEP 776
Cdd:PRK07764 665 GGDGWPAkaggAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP--AATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLP 742

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 564353570 777 TAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPA 816
Cdd:PRK07764 743 PEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
PHA03247 PHA03247
large tegument protein UL36; Provisional
 626-885 6.86e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 6.86e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  626 PPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPkqrsPPVTKRRSPSLSSKhrkgSSPGRSTREARSPQPNKRHSPSPr 705
Cdd:PHA03247 2701 PPPPPPTPEPAPHALVSATPLPPGPAAARQASPA----LPAAPAPPAVPAGP----ATPGGPARPARPPTTAGPPAPAP- 2771

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  706 PRAPQTSSPP--PVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPA 783
Cdd:PHA03247 2772 PAAPAAGPPRrlTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLP 2851

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  784 PPSPVQ-----SQSPSTNWSPAAPAKKAKSPT---PSPSPARNSDqegggkKKKKKKDKKHKKDKKHKKHKKHKKEKAVA 855
Cdd:PHA03247 2852 LGGSVApggdvRRRPPSRSPAAKPAAPARPPVrrlARPAVSRSTE------SFALPPDQPERPPQPQAPPPPQPQPQPPP 2925

                         250       260       270
                  ....*....|....*....|....*....|
gi 564353570  856 VATPAPAAPAAVSAAATPSAQEEPAAAPEP 885
Cdd:PHA03247 2926 PPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955
PHA03247 PHA03247
large tegument protein UL36; Provisional
 579-816 1.43e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.63  E-value: 1.43e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  579 PPPPPPPRRRRSPT---PPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSH 655
Cdd:PHA03247 2566 RSVPPPRPAPRPSEpavTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPT 2645

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  656 SPPPKQRSppvtKRRSPSLSSKHRKGSSPGRSTREARSPQpnkrhspSPRPRApqtsSPPPVRRGASASPQGRQSPSPST 735
Cdd:PHA03247 2646 VPPPERPR----DDPAPGRVSRPRRARRLGRAAQASSPPQ-------RPRRRA----ARPTVGSLTSLADPPPPPPTPEP 2710

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  736 RPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPAPPspvqsQSPSTNWSPAAPAKKAKSPTPSPSP 815
Cdd:PHA03247 2711 APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP-----PTTAGPPAPAPPAAPAAGPPRRLTR 2785


                  .
gi 564353570  816 A 816
Cdd:PHA03247 2786 P 2786
PHA03247 PHA03247
large tegument protein UL36; Provisional
 377-747 4.22e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.09  E-value: 4.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  377 SSPPRKTRRLSPSAspPRRRHRPSSPATPPPKTRHSPTPQQSNRarksrvsvSPGRTSGKVTKHKGTEKRESPSPAPKPR 456
Cdd:PHA03247 2590 DAPPQSARPRAPVD--DRGDPRGPAPPSPLPPDTHAPDPPPPSP--------SPAANEPDPHPPPTVPPPERPRDDPAPG 2659

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  457 KVELSESEEDKGSKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQK 536
Cdd:PHA03247 2660 RVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAP 2739

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  537 ETSPRMQMGKRWQSPVTKSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSP 616
Cdd:PHA03247 2740 APPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALP 2819

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  617 PIQRRYSPSPPPKRRTASPPPPPKRRASPSPP------PKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRkgSSPGRSTRE 690
Cdd:PHA03247 2820 PAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPlggsvaPGGDVRRRPPSRSPAAKPAAPARPPVRRLAR--PAVSRSTES 2897

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 564353570  691 ARSPQPNKRHSPSPR-PRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEP 747
Cdd:PHA03247 2898 FALPPDQPERPPQPQaPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955
PHA03247 PHA03247
large tegument protein UL36; Provisional
 624-893 4.67e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 4.67e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  624 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSppvtKRRSPSLSSKHRKGSSPGRSTRE------------- 690
Cdd:PHA03247 2614 PSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPR----DDPAPGRVSRPRRARRLGRAAQAssppqrprrraar 2689

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  691 ---------ARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRP--------IRRVSRTPEPKKIKKA 753
Cdd:PHA03247 2690 ptvgsltslADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPagpatpggPARPARPPTTAGPPAP 2769

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  754 ASPSPQSVRRVSSSRSVSGSP---------------EPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARN 818
Cdd:PHA03247 2770 APPAAPAAGPPRRLTRPAVASlsesreslpspwdpaDPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPS 2849

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  819 SDQEGG-----------------GKKKKKKKDKKHKKDKKHKKHKKHKKEKAVAVATPAPAAPAAVSAAATPSAQEEPAA 881
Cdd:PHA03247 2850 LPLGGSvapggdvrrrppsrspaAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQP 2929

                         330
                  ....*....|..
gi 564353570  882 APEPRKETESEA 893
Cdd:PHA03247 2930 QPPPPPPPRPQP 2941
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 378-726 1.39e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 49.01  E-value: 1.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  378 SPPRKTRRLSPSASPPRRRHRPSSPATPPPktrhSPTPQQSNRARKSRVSVSPGRTSGKVTkhkGTEKRESPSPAPKPRK 457
Cdd:PHA03307   99 SPAREGSPTPPGPSSPDPPPPTPPPASPPP----SPAPDLSEMLRPVGSPGPPPAASPPAA---GASPAAVASDAASSRQ 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  458 VEL-----SESEEDKGSKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRShvkngevgRRRRHSPSRSASPSPR 532
Cdd:PHA03307  172 AALplsspEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRS--------AADDAGASSSDSSSSE 243

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  533 KRQKETSPRMQMGKRWQSPVTkSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPR 612
Cdd:PHA03307  244 SSGCGWGPENECPLPRPAPIT-LPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSR 322

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  613 RYSPPIQRRYSPSPppkrRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSskhrKGSSPGRSTREAR 692
Cdd:PHA03307  323 ESSSSSTSSSSESS----RGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAAS----AGRPTRRRARAAV 394

                         330       340       350
                  ....*....|....*....|....*....|....
gi 564353570  693 SPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQ 726
Cdd:PHA03307  395 AGRARRRDATGRFPAGRPRPSPLDAGAASGAFYA 428
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 681-905 5.65e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.90  E-value: 5.65e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570 681 GSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIrrvsrTPEPKKIKKAASPSPQS 760
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV-----AAPEHHPKHVAVPDASD 664

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570 761 VRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARNSDQEGGGKKKKKKKDKKHKKDK 840
Cdd:PRK07764 665 GGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPE 744

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564353570 841 KHKKHKKHKKEKAVAVATPAPAAPAAVSAAATPSAQEEPA----AAPEPRKETESEAEDDNLDDLERHL 905
Cdd:PRK07764 745 PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEmaedDAPSMDDEDRRDAEEVAMELLEEEL 813
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 579-820 7.95e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 46.70  E-value: 7.95e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  579 PPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPpiqrrysPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP 658
Cdd:PHA03307   77 TEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSP-------DPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPA 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  659 PKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPI 738
Cdd:PHA03307  150 ASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAA 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  739 RRVSRTPEpkkikkAASPSPQSVRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARN 818
Cdd:PHA03307  230 DDAGASSS------DSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSP 303


                  ..
gi 564353570  819 SD 820
Cdd:PHA03307  304 GS 305
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
623-724 3.05e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.48  E-value: 3.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570 623 SPSPPPKRRTASPPPPPKRRASPSPPPKR-------RVSHSPPPKQRSPPVTKRRSP----------SLSSKHRKGSSPG 685
Cdd:PRK12323 455 AAAPAAAARPAAAGPRPVAAAAAAAPARAapaaapaPADDDPPPWEELPPEFASPAPaqpdaapagwVAESIPDPATADP 534

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 564353570 686 RSTREARSPQPNKrhSPSPRPRAPQTSSPPPVRRGASAS 724
Cdd:PRK12323 535 DDAFETLAPAPAA--APAPRAAAATEPVVAPRPPRASAS 571
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 625-896 4.22e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.39  E-value: 4.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  625 SPPPKRRTASPPPPPKRRASPSPPpkrrvsHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSP 704
Cdd:PHA03307   53 VTVVAGAAACDRFEPPTGPPPGPG------TEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASP 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  705 RPRAPqTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPepkkikkaASPSPQSVRRVSSSRSVSGSPEPTAKKPPAP 784
Cdd:PHA03307  127 PPSPA-PDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDA--------ASSRQAALPLSSPEETARAPSSPPAEPPPST 197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  785 PSPVQSQSPSTNWSPAAPAkkakSPTPSPSPARNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKHKKEKAVAVATPAPAAP 864
Cdd:PHA03307  198 PPAAASPRPPRRSSPISAS----ASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEAS 273

                         250       260       270
                  ....*....|....*....|....*....|..
gi 564353570  865 AAVSAAATPSAQEEPAAAPEPRKETESEAEDD 896
Cdd:PHA03307  274 GWNGPSSRPGPASSSSSPRERSPSPSPSSPGS 305
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 619-737 4.59e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.39  E-value: 4.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  619 QRRYSPSPPPKRRTASPPPPPKRRASPSPP------PKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREAR 692
Cdd:PHA03307  781 QRGAGSSPPVRAEAAFRRPGRLRRSGPAADaasrtaSKRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAA 860

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 564353570  693 SPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRP 737
Cdd:PHA03307  861 AGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRP 905
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 621-746 4.93e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.93  E-value: 4.93e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570 621 RYSPSPPPKRRTASPPPPPKRRASPSPPPKR---RVSHSPPPKQRSPPVTkrrSPSLSSKHRKGSSPGRSTREARSPQPN 697
Cdd:PRK14951 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAaaaPAPAAAPAAAASAPAA---PPAAAPPAPVAAPAAAAPAAAPAAAPA 443

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 564353570 698 KRH-SPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPE 746
Cdd:PRK14951 444 AVAlAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 579-815 5.82e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.01  E-value: 5.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  579 PPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP 658
Cdd:PHA03307  128 PSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPP 207

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  659 PKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSP---SPRPRAPQTSSPPPVRRGASASPQG-RQSPSPS 734
Cdd:PHA03307  208 RRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPeneCPLPRPAPITLPTRIWEASGWNGPSsRPGPASS 287

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  735 TRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPAPPSPV-------QSQSPSTNWSPAAPAKKAK 807
Cdd:PHA03307  288 SSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVspgpspsRSPSPSRPPPPADPSSPRK 367


                  ....*...
gi 564353570  808 SPTPSPSP 815
Cdd:PHA03307  368 RPRPSRAP 375
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
626-759 1.04e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 42.34  E-value: 1.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  626 PPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPR 705
Cdd:pfam05539 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSP 247

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 564353570  706 PRAPQTSSPPPVRRGASA--SPQGRQSPSPS-TRPIRRVSRTPEPKKIKKAASPSPQ 759
Cdd:pfam05539 248 QHPPSTTSQDQSTTGDGQehTQRRKTPPATSnRRSPHSTATPPPTTKRQETGRPTPR 304
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 623-817 1.55e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.47  E-value: 1.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  623 SPSPPPKRRTASPPPPPKRRASPSPP------PKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSP-- 694
Cdd:PHA03307  219 SPAPAPGRSAADDAGASSSDSSSSESsgcgwgPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPsp 298

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  695 QPNKRHSPSPRPRAPQTSSPPPVRRGASASPqGRQSPSPSTRPirrVSRTPEPkkikkAASPSPQSVRRVSSSRSVSGSP 774
Cdd:PHA03307  299 SPSSPGSGPAPSSPRASSSSSSSRESSSSST-SSSSESSRGAA---VSPGPSP-----SRSPSPSRPPPPADPSSPRKRP 369

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 564353570  775 EPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPAR 817
Cdd:PHA03307  370 RPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRP 412
PHA03247 PHA03247
large tegument protein UL36; Provisional
 378-740 1.87e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 1.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  378 SPPRKTRRLSPSA---SPPRRRHRPSSPATPPPKT---RHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSP 451
Cdd:PHA03247 2662 SRPRRARRLGRAAqasSPPQRPRRRAARPTVGSLTslaDPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAP 2741

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  452 APKPRKVELSESEEDKGSKMAAADsvqqrrqyrrqnqqsssdsgssstsederPKRSHVKNGEVGRRRRHSPSRSASPSP 531
Cdd:PHA03247 2742 PAVPAGPATPGGPARPARPPTTAG-----------------------------PPAPAPPAAPAAGPPRRLTRPAVASLS 2792

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  532 RKRQKETSPrmqmgkrWQSPVTKSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSP 611
Cdd:PHA03247 2793 ESRESLPSP-------WDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRR 2865

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  612 RRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQR-----SPPVTKRRSPSLSSKHRKGSSPGR 686
Cdd:PHA03247 2866 PPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPpqpqpQPPPPPQPQPPPPPPPRPQPPLAP 2945

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 564353570  687 STREARSPQPNKRhSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRR 740
Cdd:PHA03247 2946 TTDPAGAGEPSGA-VPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTG 2998
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 619-727 1.90e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.90  E-value: 1.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570 619 QRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRvshsPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNK 698
Cdd:PRK07764 401 AAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPA----PAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEP 476

                         90       100
                 ....*....|....*....|....*....
gi 564353570 699 RHSPSPRPRAPQTSSPPPVRRGASASPQG 727
Cdd:PRK07764 477 TAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 551-757 2.86e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.70  E-value: 2.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  551 PVTKSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKR 630
Cdd:PHA03307  190 PAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRI 269

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  631 RTASPPPPPKRRASP----------SPPPKRRVSHSPPPKQRSPPVTKR-RSPSLSSKHRKGSSPGRSTREARSPQPNKR 699
Cdd:PHA03307  270 WEASGWNGPSSRPGPasssssprerSPSPSPSSPGSGPAPSSPRASSSSsSSRESSSSSTSSSSESSRGAAVSPGPSPSR 349

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 564353570  700 HSPSPRPRAPQTSSPPPvRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPS 757
Cdd:PHA03307  350 SPSPSRPPPPADPSSPR-KRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGR 406
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 625-758 3.25e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 41.39  E-value: 3.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570 625 SPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPK-QRSPPVTKRRSPSLSSKHRKgsspgrSTREARSPQPNKRHSPS 703
Cdd:PRK07994 371 PPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASApQQAPAVPLPETTSQLLAARQ------QLQRAQGATKAKKSEPA 444

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 564353570 704 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSP 758
Cdd:PRK07994 445 AASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKA 499
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 623-734 5.05e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.74  E-value: 5.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570 623 SPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSP 702
Cdd:PRK07764 393 APAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAA 472

                         90       100       110
                 ....*....|....*....|....*....|..
gi 564353570 703 SPRPRAPQTSSPPPVRRGAsASPQGRQSPSPS 734
Cdd:PRK07764 473 APEPTAAPAPAPPAAPAPA-AAPAAPAAPAAP 503
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
622-824 6.04e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.60  E-value: 6.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570 622 YSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTkrrspslsskhrkGSSPGRSTREARSPQPNKRHS 701
Cdd:PRK07003 358 FEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVT-------------GAAGAALAPKAAAAAAATRAE 424

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570 702 PSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKP 781
Cdd:PRK07003 425 APPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATP 504

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 564353570 782 PAPPSPVQSQSPSTNWSPAAPAKKA-KSPTPSPSPARNSDQEGG 824
Cdd:PRK07003 505 AAVPDARAPAAASREDAPAAAAPPApEARPPTPAAAAPAARAGG 548
PHA03247 PHA03247
large tegument protein UL36; Provisional
 618-815 6.11e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 6.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  618 IQRRYSPSPPPKRRTASPPPPP--KRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPS-LSSKHRKGSSPGRSTREARSP 694
Cdd:PHA03247  238 VERRVVISHPLRGDIAAPAPPPvvGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDgVWGAALAGAPLALPAPPDPPP 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  695 QPNKRH--------------SPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKK-IKKAASPSPQ 759
Cdd:PHA03247  318 PAPAGDaeeeddedgamevvSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRsARHAATPFAR 397

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 564353570  760 SVRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNwSPAAPAKKAKSPTPSPSP 815
Cdd:PHA03247  398 GPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATP-LPSAEPGSDDGPAPPPER 452
Gag_spuma pfam03276
Spumavirus gag protein;
624-732 6.23e-03

Spumavirus gag protein;


Pssm-ID: 460872 [Multi-domain]  Cd Length: 614  Bit Score: 40.12  E-value: 6.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570  624 PSPPPKRRTASPPPPPK-------RRASPSPPPKRRVSHSPPPKQRSPPVTKRRSpslSSKHRKGSSPGRSTREARSPQP 696
Cdd:pfam03276 207 PAIPGIHARAPPGNIARslgddimPSLGDAGMPQPRFAFHPGNPFAEAEGHPFAE---AEGERPRDIPRAPRIDAPSAPA 283

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 564353570  697 NKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPS 732
Cdd:pfam03276 284 IPAIQPIAPPMIPPIGAPIPIPHGASIPGEHIRNPR 319
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 624-737 7.47e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 7.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353570 624 PSPPPKRRTASPPPPPKRRASPSPPpkrRVSHSPPPKQRSPPVTKRRSPSLSSkhrkgsSPGRSTREARSPQPNKRHSPS 703
Cdd:PRK07764 399 PSAAAAAPAAAPAPAAAAPAAAAAP---APAAAPQPAPAPAPAPAPPSPAGNA------PAGGAPSPPPAAAPSAQPAPA 469

                         90       100       110
                 ....*....|....*....|....*....|....
gi 564353570 704 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRP 737
Cdd:PRK07764 470 PAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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