|
Name |
Accession |
Description |
Interval |
E-value |
| TSPN |
smart00210 |
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ... |
56-237 |
1.20e-55 |
|
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin
:
Pssm-ID: 214560 Cd Length: 184 Bit Score: 191.42 E-value: 1.20e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 56 GFNLIRRLNLM-KTSAIKKIRNPKGP-LILRLG-AAPLTQATRRVFPRGLPEEFALVLTVLLKKhtfRNTWYLFQVTDAN 132
Cdd:smart00210 1 GQDLLQVFDLPsLSFAIRQVVGPEPGsPAYRLGdPALVPQPTRDLFPSGLPEDFSLLTTFRQTP---KSRGVLFAIYDAQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 133 GYPQVSLEVNSQERTLELRAQGQDGDFVSCIFPVPQLFDLRWHKLMLSVASRVASVHVDCVSASSQPLGPR--QPIRPGG 210
Cdd:smart00210 78 NVRQFGLEVDGRANTLLLRYQGVDGKQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157
|
170 180
....*....|....*....|....*..
gi 564353021 211 HVFLGLDAEQGKPVSFDLQQAHIYCDP 237
Cdd:smart00210 158 IEVRGAQAADRKPFQGDLQQLKIVCDP 184
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1069-1288 |
2.44e-22 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 102.29 E-value: 2.44e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1069 GSPGLPGLQGERGPTGLTGDKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGE 1148
Cdd:NF038329 120 GEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGE 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1149 RGPQGSSGEKGDQGFQGQPGFPGPPGPPGFPGKaGAPGPPGPQAEKGSEGMRGPSGLPGSPGPPGPPGIQGPAGLDGLDG 1228
Cdd:NF038329 200 TGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDG 278
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1229 KDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPG 1288
Cdd:NF038329 279 ERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
550-809 |
1.07e-17 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 87.65 E-value: 1.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 550 EGLGTVGLKGDRGDPGIQGMKGEKGEPcsscssgvgaqhlGPSTGvnedmgspvHGLPGLPGKPGIPGPRGMKGEKGSFG 629
Cdd:NF038329 108 EGLQQLKGDGEKGEPGPAGPAGPAGEQ-------------GPRGD---------RGETGPAGPAGPPGPQGERGEKGPAG 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 630 DAGPAGVAGPPGPVGPAGIKGAKGEPCEPCASLSKLQDGDTQVVHLPGPAGEKGEPGPPGSGLPGKQGRAGERGLKGQKG 709
Cdd:NF038329 166 PQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTG 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 710 DAGNPGDPGTPGITGQPGMSGEPGVRGPAGPKGEKGDGCTACPSLQGAltdVSGLPGKPGPKGEPGPEGVgrPGKPGQPG 789
Cdd:NF038329 246 EDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNG---KDGLPGKDGKDGQNGKDGL--PGKDGKDG 320
|
250 260
....*....|....*....|
gi 564353021 790 LPGVQGPPGLKGTQGEPGPP 809
Cdd:NF038329 321 QPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1225-1524 |
1.69e-11 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 68.39 E-value: 1.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1225 GLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPgppghlgp 1304
Cdd:NF038329 126 GPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPR-------- 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1305 qgppgqpgppglstmGLKGDRGSPGERGLAGlpgqpgtpghpgppgEPGSDGAAGKEGPPGKQGlygppgpkgdpgpAGQ 1384
Cdd:NF038329 198 ---------------GETGPAGEQGPAGPAG---------------PDGEAGPAGEDGPAGPAG-------------DGQ 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1385 KGQAGEKGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDmvNYDDikrfirqeiiklfderm 1464
Cdd:NF038329 235 QGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQ--NGKD----------------- 295
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1465 ayytsrmqfpmevaaapGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPG 1524
Cdd:NF038329 296 -----------------GLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| PRK07764 super family |
cl35613 |
DNA polymerase III subunits gamma and tau; Validated |
766-884 |
4.91e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
The actual alignment was detected with superfamily member PRK07764:
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.51 E-value: 4.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 766 GKPGPKGEPGPEGVGRPGKPGQPGLPGVQGPPGLKGTQGEPGPPGTGAEGPQGEPGTPGLPGIQGPPGPRGPPGSTGEHG 845
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW 669
|
90 100 110
....*....|....*....|....*....|....*....
gi 564353021 846 AQGPPGPKGATGPMGPPGASISGPPGQKGSRGEKGEPGE 884
Cdd:PRK07764 670 PAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAAT 708
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
347-429 |
8.61e-03 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 40.66 E-value: 8.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 347 DQGLTGPSGPKGEKGARGndcvrisPDGP-----LQCAEGPKGEKGESGDLGPSGLPGPTGQKGQKGEkgdgglKGLPGK 421
Cdd:NF038329 264 DRGEAGPDGPDGKDGERG-------PVGPagkdgQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGK------DGLPGK 330
|
....*...
gi 564353021 422 PGRDGRPG 429
Cdd:NF038329 331 DGKDGQPG 338
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TSPN |
smart00210 |
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ... |
56-237 |
1.20e-55 |
|
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin
Pssm-ID: 214560 Cd Length: 184 Bit Score: 191.42 E-value: 1.20e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 56 GFNLIRRLNLM-KTSAIKKIRNPKGP-LILRLG-AAPLTQATRRVFPRGLPEEFALVLTVLLKKhtfRNTWYLFQVTDAN 132
Cdd:smart00210 1 GQDLLQVFDLPsLSFAIRQVVGPEPGsPAYRLGdPALVPQPTRDLFPSGLPEDFSLLTTFRQTP---KSRGVLFAIYDAQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 133 GYPQVSLEVNSQERTLELRAQGQDGDFVSCIFPVPQLFDLRWHKLMLSVASRVASVHVDCVSASSQPLGPR--QPIRPGG 210
Cdd:smart00210 78 NVRQFGLEVDGRANTLLLRYQGVDGKQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157
|
170 180
....*....|....*....|....*..
gi 564353021 211 HVFLGLDAEQGKPVSFDLQQAHIYCDP 237
Cdd:smart00210 158 IEVRGAQAADRKPFQGDLQQLKIVCDP 184
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1069-1288 |
2.44e-22 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 102.29 E-value: 2.44e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1069 GSPGLPGLQGERGPTGLTGDKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGE 1148
Cdd:NF038329 120 GEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGE 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1149 RGPQGSSGEKGDQGFQGQPGFPGPPGPPGFPGKaGAPGPPGPQAEKGSEGMRGPSGLPGSPGPPGPPGIQGPAGLDGLDG 1228
Cdd:NF038329 200 TGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDG 278
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1229 KDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPG 1288
Cdd:NF038329 279 ERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1075-1288 |
1.76e-20 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 96.51 E-value: 1.76e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1075 GLQGERGPTGLTGDKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGERGPQGS 1154
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1155 SGEKGDQGFQGQPGFPGPPGPPGFPGKAGAPGPP-----GPQAEKGSEGMRGPSGLPGSPGPPGPPGIQGPAGLDGLDGK 1229
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAgdgqqGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGK 276
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564353021 1230 DGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPG 1288
Cdd:NF038329 277 DGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
550-809 |
1.07e-17 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 87.65 E-value: 1.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 550 EGLGTVGLKGDRGDPGIQGMKGEKGEPcsscssgvgaqhlGPSTGvnedmgspvHGLPGLPGKPGIPGPRGMKGEKGSFG 629
Cdd:NF038329 108 EGLQQLKGDGEKGEPGPAGPAGPAGEQ-------------GPRGD---------RGETGPAGPAGPPGPQGERGEKGPAG 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 630 DAGPAGVAGPPGPVGPAGIKGAKGEPCEPCASLSKLQDGDTQVVHLPGPAGEKGEPGPPGSGLPGKQGRAGERGLKGQKG 709
Cdd:NF038329 166 PQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTG 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 710 DAGNPGDPGTPGITGQPGMSGEPGVRGPAGPKGEKGDGCTACPSLQGAltdVSGLPGKPGPKGEPGPEGVgrPGKPGQPG 789
Cdd:NF038329 246 EDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNG---KDGLPGKDGKDGQNGKDGL--PGKDGKDG 320
|
250 260
....*....|....*....|
gi 564353021 790 LPGVQGPPGLKGTQGEPGPP 809
Cdd:NF038329 321 QPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1114-1426 |
2.30e-16 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 83.80 E-value: 2.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1114 GERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEKGdqgfqgqpgfpgppgPPGFPGKAGAPGPPGPQAE 1193
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKG---------------PAGPQGEAGPQGPAGKDGE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1194 KGSEGMRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGlmgppgfKGKTGHPGLPGPKGDCGKPG 1273
Cdd:NF038329 182 AGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQ-------QGPDGDPGPTGEDGPQGPDG 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1274 PPGSSGRPGAEGEPgamgpqgrpgppghlgpqgppgqpgppglstmGLKGDRGSPGERGLAGLpgqpgtpghpgppgepg 1353
Cdd:NF038329 255 PAGKDGPRGDRGEA--------------------------------GPDGPDGKDGERGPVGP----------------- 285
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564353021 1354 sdgaAGKEGPPGKQGLygppgpkgdpgpAGQKGQAGEKGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGP 1426
Cdd:NF038329 286 ----AGKDGQNGKDGL------------PGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAP 342
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
727-884 |
1.41e-13 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 74.94 E-value: 1.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 727 GMSGEPGVRGPAGPKGEKGDgctacpslqgalTDVSGLPGKPGPKGEPGPEG-VGRPGKPGQPGLPGVQGPPGLKGTQGE 805
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGP------------RGDRGETGPAGPAGPPGPQGeRGEKGPAGPQGEAGPQGPAGKDGEAGA 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 806 PGPPG-TGAEGPQGEPGtpglpgiqgppgprgppgSTGEHGAQGPPGPKGATGPMGPPGASISGPPGQKGSRGEKGEPGE 884
Cdd:NF038329 185 KGPAGeKGPQGPRGETG------------------PAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGE 246
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1225-1524 |
1.69e-11 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 68.39 E-value: 1.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1225 GLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPgppghlgp 1304
Cdd:NF038329 126 GPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPR-------- 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1305 qgppgqpgppglstmGLKGDRGSPGERGLAGlpgqpgtpghpgppgEPGSDGAAGKEGPPGKQGlygppgpkgdpgpAGQ 1384
Cdd:NF038329 198 ---------------GETGPAGEQGPAGPAG---------------PDGEAGPAGEDGPAGPAG-------------DGQ 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1385 KGQAGEKGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDmvNYDDikrfirqeiiklfderm 1464
Cdd:NF038329 235 QGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQ--NGKD----------------- 295
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1465 ayytsrmqfpmevaaapGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPG 1524
Cdd:NF038329 296 -----------------GLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1254-1533 |
9.90e-11 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 66.08 E-value: 9.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1254 KGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHLGPQGPPGQPgppglstmGLKGDRGSPGERGL 1333
Cdd:NF038329 125 AGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEA--------GAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1334 AGLPGQPGTPGHPGPPGEPGSDGAAGKEGPPGKQGlygppgpkgdpgpAGQKGQAGEKGRSGMPGGPGKsgsmgpigppg 1413
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG-------------DGQQGPDGDPGPTGEDGPQGP----------- 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1414 pageRGHPGSPGPAGNPGLPGLPGSMGDmvnyddikrfirqeiiklfdermayytsrmqfpmevAAAPGRPGPPGKDGAP 1493
Cdd:NF038329 253 ----DGPAGKDGPRGDRGEAGPDGPDGK------------------------------------DGERGPVGPAGKDGQN 292
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 564353021 1494 GRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIG 1533
Cdd:NF038329 293 GKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1320-1533 |
5.56e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 63.77 E-value: 5.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1320 GLKGDRGSPGERGLAGLPGQPGTPGHPGPPGEPGSDGAAGKEGPPGKQGlygppgpkgDPGPAGQKGQAGEKGRSGMPGG 1399
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAG---------PQGEAGPQGPAGKDGEAGAKGP 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1400 PGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDMVNYDDIKRfirqeiiklfdermayytsRMQFPMEVAA 1479
Cdd:NF038329 188 AGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPD-------------------GDPGPTGEDG 248
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564353021 1480 APGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIG 1533
Cdd:NF038329 249 PQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDG 302
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
405-772 |
1.79e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 58.76 E-value: 1.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 405 GQKGEKGDGGLKGLPGKPGRDGRPGEIcviGPKGQKGDPGFVGPEGLAGEPGPPGLpgppgiglpgtpgdpggppgpkga 484
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGET---GPAGPAGPPGPQGERGEKGPAGPQGE------------------------ 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 485 kgsSGIPGKEGPGGKPGKPGVPGTKGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPAPAreGLGTVGLKGDRGDP 564
Cdd:NF038329 170 ---AGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPA--GDGQQGPDGDPGPT 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 565 GIQGMKGEKGEPCSScssgvgaqhlgpstgvnedmgspvhGLPGLPGKPGIPGPRGMKGEKGSFGDAGpagvagppgpvg 644
Cdd:NF038329 245 GEDGPQGPDGPAGKD-------------------------GPRGDRGEAGPDGPDGKDGERGPVGPAG------------ 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 645 pagikgakgepcepcaslsklQDGDTQVVHLPGPAGekgepgppgsglpgKQGRAGERGLKGQKGDAGNPGDPGTPGITG 724
Cdd:NF038329 288 ---------------------KDGQNGKDGLPGKDG--------------KDGQNGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 564353021 725 QPGMSGEPGVRGPAGP-KGEKGDGCTACPSLQGALTDVSGLPGKPGPKG 772
Cdd:NF038329 333 KDGQPGKPAPKTPEVPqKPDTAPHTPKTPQIPGQSKDVTPAPQNPSNRG 381
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1104-1157 |
3.61e-06 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 45.56 E-value: 3.61e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 564353021 1104 MGPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGE 1157
Cdd:pfam01391 3 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
845-1266 |
1.01e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 49.90 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 845 GAQGPPGPKGATGPMGPPGASisGPPGQKGSRGEKGEPGEcscpsRGEPIFSGMPGAPGlwmgsssqpgpqgPPgvpgpp 924
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPR--GDRGETGPAGPAGPPGP-----QGERGEKGPAGPQG-------------EA------ 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 925 gppgmpglqgvpGHNGLPGQPGLTAELGSlpieqhllksicgdcaqgqaahsasllvKGEKGDQGVPGVPGfndcarcfi 1004
Cdd:NF038329 171 ------------GPQGPAGKDGEAGAKGP----------------------------AGEKGPQGPRGETG--------- 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1005 ererpraeeargdnsegepgcpgspglpgppgMPGQRGEEGPPGMRgspglpgpvgppgfpgavgspGLPGLQGERGPTG 1084
Cdd:NF038329 202 --------------------------------PAGEQGPAGPAGPD---------------------GEAGPAGEDGPAG 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1085 LTGDKGEpgppgqpgypgamGPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEKGdqgfq 1164
Cdd:NF038329 229 PAGDGQQ-------------GPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDG----- 290
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1165 gqpgfpgppgppgFPGKAGAPGPPGPQAEKGSEGmrgpsglpgspgppgppgiqgpagLDGLDGKDGKPGLRGDPGPAgp 1244
Cdd:NF038329 291 -------------QNGKDGLPGKDGKDGQNGKDG------------------------LPGKDGKDGQPGKDGLPGKD-- 331
|
410 420
....*....|....*....|..
gi 564353021 1245 pglmgppgfkGKTGHPGLPGPK 1266
Cdd:NF038329 332 ----------GKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1384-1562 |
7.67e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 47.21 E-value: 7.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1384 QKGQAGEKGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDmvnyddikrfirqeiiklfder 1463
Cdd:NF038329 112 QLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGE---------------------- 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1464 mayytsrmqfpmevaaaPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIG-VGIAGENGL 1542
Cdd:NF038329 170 -----------------AGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGeDGPAGPAGD 232
|
170 180
....*....|....*....|
gi 564353021 1543 PGPPGPQGPPGYGKMGATGP 1562
Cdd:NF038329 233 GQQGPDGDPGPTGEDGPQGP 252
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
699-870 |
4.55e-04 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 44.64 E-value: 4.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 699 AGERGLKGQKGDAGNPGDPGTPGITGQPGMSGEPGVRGPAGPKGEKGDGCTACPSLQGALTDvsglPGKPGPKGEPGPEG 778
Cdd:COG5164 66 AGNQGATGPAQNQGGTTPAQNQGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTT----PPSGGSTTPPGDGG 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 779 VGRPGkPGQPGLPGVQGPPGLKGTQGEPGPPGTGAEGPQGEPGTPGLPGIQGPPGPRGPPGSTGEHGAQGPPGPKGATGP 858
Cdd:COG5164 142 STPPG-PGSTGPGGSTTPPGDGGSTTPPGPGGSTTPPDDGGSTTPPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNP 220
|
170
....*....|..
gi 564353021 859 mgPPGASISGPP 870
Cdd:COG5164 221 --PDDRGGKTGP 230
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1481-1533 |
6.22e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.40 E-value: 6.22e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 564353021 1481 PGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIG 1533
Cdd:pfam01391 3 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
1074-1285 |
4.51e-03 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 41.55 E-value: 4.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1074 PGLQGERGPTGLTGDKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAG---PAGEKGESGPPGSEGLPGPQGPAGPRGERG 1150
Cdd:COG5164 6 PGKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGsttPAGNTGGTRPAGNQGATGPAQNQGGTTPAQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1151 PQGSSGEKGDQGFQGQPGFPgppgppgfpgkaGAPGPPGPQAEKGSEGMRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKD 1230
Cdd:COG5164 86 NQGGTRPAGNTGGTTPAGDG------------GATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPG 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564353021 1231 GKPGLRGDPGPAGPPGLMGPPGFKGKTGhPGLPGPKGDCGKPGPPGSSGRPGAEG 1285
Cdd:COG5164 154 GSTTPPGDGGSTTPPGPGGSTTPPDDGG-STTPPNKGETGTDIPTGGTPRQGPDG 207
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
766-884 |
4.91e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.51 E-value: 4.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 766 GKPGPKGEPGPEGVGRPGKPGQPGLPGVQGPPGLKGTQGEPGPPGTGAEGPQGEPGTPGLPGIQGPPGPRGPPGSTGEHG 845
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW 669
|
90 100 110
....*....|....*....|....*....|....*....
gi 564353021 846 AQGPPGPKGATGPMGPPGASISGPPGQKGSRGEKGEPGE 884
Cdd:PRK07764 670 PAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAAT 708
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
347-429 |
8.61e-03 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 40.66 E-value: 8.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 347 DQGLTGPSGPKGEKGARGndcvrisPDGP-----LQCAEGPKGEKGESGDLGPSGLPGPTGQKGQKGEkgdgglKGLPGK 421
Cdd:NF038329 264 DRGEAGPDGPDGKDGERG-------PVGPagkdgQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGK------DGLPGK 330
|
....*...
gi 564353021 422 PGRDGRPG 429
Cdd:NF038329 331 DGKDGQPG 338
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
384-439 |
8.71e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 35.93 E-value: 8.71e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 564353021 384 GEKGESGDLGPSGLPGPTGQKGQKGEKGDGGLKGLPGKPGRDGRPGEICVIGPKGQ 439
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TSPN |
smart00210 |
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ... |
56-237 |
1.20e-55 |
|
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin
Pssm-ID: 214560 Cd Length: 184 Bit Score: 191.42 E-value: 1.20e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 56 GFNLIRRLNLM-KTSAIKKIRNPKGP-LILRLG-AAPLTQATRRVFPRGLPEEFALVLTVLLKKhtfRNTWYLFQVTDAN 132
Cdd:smart00210 1 GQDLLQVFDLPsLSFAIRQVVGPEPGsPAYRLGdPALVPQPTRDLFPSGLPEDFSLLTTFRQTP---KSRGVLFAIYDAQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 133 GYPQVSLEVNSQERTLELRAQGQDGDFVSCIFPVPQLFDLRWHKLMLSVASRVASVHVDCVSASSQPLGPR--QPIRPGG 210
Cdd:smart00210 78 NVRQFGLEVDGRANTLLLRYQGVDGKQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157
|
170 180
....*....|....*....|....*..
gi 564353021 211 HVFLGLDAEQGKPVSFDLQQAHIYCDP 237
Cdd:smart00210 158 IEVRGAQAADRKPFQGDLQQLKIVCDP 184
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1069-1288 |
2.44e-22 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 102.29 E-value: 2.44e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1069 GSPGLPGLQGERGPTGLTGDKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGE 1148
Cdd:NF038329 120 GEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGE 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1149 RGPQGSSGEKGDQGFQGQPGFPGPPGPPGFPGKaGAPGPPGPQAEKGSEGMRGPSGLPGSPGPPGPPGIQGPAGLDGLDG 1228
Cdd:NF038329 200 TGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDG 278
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1229 KDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPG 1288
Cdd:NF038329 279 ERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1075-1288 |
1.76e-20 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 96.51 E-value: 1.76e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1075 GLQGERGPTGLTGDKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGERGPQGS 1154
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1155 SGEKGDQGFQGQPGFPGPPGPPGFPGKAGAPGPP-----GPQAEKGSEGMRGPSGLPGSPGPPGPPGIQGPAGLDGLDGK 1229
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAgdgqqGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGK 276
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564353021 1230 DGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPG 1288
Cdd:NF038329 277 DGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
550-809 |
1.07e-17 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 87.65 E-value: 1.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 550 EGLGTVGLKGDRGDPGIQGMKGEKGEPcsscssgvgaqhlGPSTGvnedmgspvHGLPGLPGKPGIPGPRGMKGEKGSFG 629
Cdd:NF038329 108 EGLQQLKGDGEKGEPGPAGPAGPAGEQ-------------GPRGD---------RGETGPAGPAGPPGPQGERGEKGPAG 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 630 DAGPAGVAGPPGPVGPAGIKGAKGEPCEPCASLSKLQDGDTQVVHLPGPAGEKGEPGPPGSGLPGKQGRAGERGLKGQKG 709
Cdd:NF038329 166 PQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTG 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 710 DAGNPGDPGTPGITGQPGMSGEPGVRGPAGPKGEKGDGCTACPSLQGAltdVSGLPGKPGPKGEPGPEGVgrPGKPGQPG 789
Cdd:NF038329 246 EDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNG---KDGLPGKDGKDGQNGKDGL--PGKDGKDG 320
|
250 260
....*....|....*....|
gi 564353021 790 LPGVQGPPGLKGTQGEPGPP 809
Cdd:NF038329 321 QPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1114-1426 |
2.30e-16 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 83.80 E-value: 2.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1114 GERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEKGdqgfqgqpgfpgppgPPGFPGKAGAPGPPGPQAE 1193
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKG---------------PAGPQGEAGPQGPAGKDGE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1194 KGSEGMRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGlmgppgfKGKTGHPGLPGPKGDCGKPG 1273
Cdd:NF038329 182 AGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQ-------QGPDGDPGPTGEDGPQGPDG 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1274 PPGSSGRPGAEGEPgamgpqgrpgppghlgpqgppgqpgppglstmGLKGDRGSPGERGLAGLpgqpgtpghpgppgepg 1353
Cdd:NF038329 255 PAGKDGPRGDRGEA--------------------------------GPDGPDGKDGERGPVGP----------------- 285
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564353021 1354 sdgaAGKEGPPGKQGLygppgpkgdpgpAGQKGQAGEKGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGP 1426
Cdd:NF038329 286 ----AGKDGQNGKDGL------------PGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAP 342
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
727-884 |
1.41e-13 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 74.94 E-value: 1.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 727 GMSGEPGVRGPAGPKGEKGDgctacpslqgalTDVSGLPGKPGPKGEPGPEG-VGRPGKPGQPGLPGVQGPPGLKGTQGE 805
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGP------------RGDRGETGPAGPAGPPGPQGeRGEKGPAGPQGEAGPQGPAGKDGEAGA 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 806 PGPPG-TGAEGPQGEPGtpglpgiqgppgprgppgSTGEHGAQGPPGPKGATGPMGPPGASISGPPGQKGSRGEKGEPGE 884
Cdd:NF038329 185 KGPAGeKGPQGPRGETG------------------PAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGE 246
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1225-1524 |
1.69e-11 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 68.39 E-value: 1.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1225 GLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPgppghlgp 1304
Cdd:NF038329 126 GPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPR-------- 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1305 qgppgqpgppglstmGLKGDRGSPGERGLAGlpgqpgtpghpgppgEPGSDGAAGKEGPPGKQGlygppgpkgdpgpAGQ 1384
Cdd:NF038329 198 ---------------GETGPAGEQGPAGPAG---------------PDGEAGPAGEDGPAGPAG-------------DGQ 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1385 KGQAGEKGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDmvNYDDikrfirqeiiklfderm 1464
Cdd:NF038329 235 QGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQ--NGKD----------------- 295
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1465 ayytsrmqfpmevaaapGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPG 1524
Cdd:NF038329 296 -----------------GLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1254-1533 |
9.90e-11 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 66.08 E-value: 9.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1254 KGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHLGPQGPPGQPgppglstmGLKGDRGSPGERGL 1333
Cdd:NF038329 125 AGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEA--------GAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1334 AGLPGQPGTPGHPGPPGEPGSDGAAGKEGPPGKQGlygppgpkgdpgpAGQKGQAGEKGRSGMPGGPGKsgsmgpigppg 1413
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG-------------DGQQGPDGDPGPTGEDGPQGP----------- 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1414 pageRGHPGSPGPAGNPGLPGLPGSMGDmvnyddikrfirqeiiklfdermayytsrmqfpmevAAAPGRPGPPGKDGAP 1493
Cdd:NF038329 253 ----DGPAGKDGPRGDRGEAGPDGPDGK------------------------------------DGERGPVGPAGKDGQN 292
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 564353021 1494 GRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIG 1533
Cdd:NF038329 293 GKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1320-1533 |
5.56e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 63.77 E-value: 5.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1320 GLKGDRGSPGERGLAGLPGQPGTPGHPGPPGEPGSDGAAGKEGPPGKQGlygppgpkgDPGPAGQKGQAGEKGRSGMPGG 1399
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAG---------PQGEAGPQGPAGKDGEAGAKGP 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1400 PGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDMVNYDDIKRfirqeiiklfdermayytsRMQFPMEVAA 1479
Cdd:NF038329 188 AGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPD-------------------GDPGPTGEDG 248
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564353021 1480 APGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIG 1533
Cdd:NF038329 249 PQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDG 302
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
405-772 |
1.79e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 58.76 E-value: 1.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 405 GQKGEKGDGGLKGLPGKPGRDGRPGEIcviGPKGQKGDPGFVGPEGLAGEPGPPGLpgppgiglpgtpgdpggppgpkga 484
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGET---GPAGPAGPPGPQGERGEKGPAGPQGE------------------------ 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 485 kgsSGIPGKEGPGGKPGKPGVPGTKGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPAPAreGLGTVGLKGDRGDP 564
Cdd:NF038329 170 ---AGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPA--GDGQQGPDGDPGPT 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 565 GIQGMKGEKGEPCSScssgvgaqhlgpstgvnedmgspvhGLPGLPGKPGIPGPRGMKGEKGSFGDAGpagvagppgpvg 644
Cdd:NF038329 245 GEDGPQGPDGPAGKD-------------------------GPRGDRGEAGPDGPDGKDGERGPVGPAG------------ 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 645 pagikgakgepcepcaslsklQDGDTQVVHLPGPAGekgepgppgsglpgKQGRAGERGLKGQKGDAGNPGDPGTPGITG 724
Cdd:NF038329 288 ---------------------KDGQNGKDGLPGKDG--------------KDGQNGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 564353021 725 QPGMSGEPGVRGPAGP-KGEKGDGCTACPSLQGALTDVSGLPGKPGPKG 772
Cdd:NF038329 333 KDGQPGKPAPKTPEVPqKPDTAPHTPKTPQIPGQSKDVTPAPQNPSNRG 381
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1104-1157 |
3.61e-06 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 45.56 E-value: 3.61e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 564353021 1104 MGPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGE 1157
Cdd:pfam01391 3 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
845-1266 |
1.01e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 49.90 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 845 GAQGPPGPKGATGPMGPPGASisGPPGQKGSRGEKGEPGEcscpsRGEPIFSGMPGAPGlwmgsssqpgpqgPPgvpgpp 924
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPR--GDRGETGPAGPAGPPGP-----QGERGEKGPAGPQG-------------EA------ 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 925 gppgmpglqgvpGHNGLPGQPGLTAELGSlpieqhllksicgdcaqgqaahsasllvKGEKGDQGVPGVPGfndcarcfi 1004
Cdd:NF038329 171 ------------GPQGPAGKDGEAGAKGP----------------------------AGEKGPQGPRGETG--------- 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1005 ererpraeeargdnsegepgcpgspglpgppgMPGQRGEEGPPGMRgspglpgpvgppgfpgavgspGLPGLQGERGPTG 1084
Cdd:NF038329 202 --------------------------------PAGEQGPAGPAGPD---------------------GEAGPAGEDGPAG 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1085 LTGDKGEpgppgqpgypgamGPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEKGdqgfq 1164
Cdd:NF038329 229 PAGDGQQ-------------GPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDG----- 290
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1165 gqpgfpgppgppgFPGKAGAPGPPGPQAEKGSEGmrgpsglpgspgppgppgiqgpagLDGLDGKDGKPGLRGDPGPAgp 1244
Cdd:NF038329 291 -------------QNGKDGLPGKDGKDGQNGKDG------------------------LPGKDGKDGQPGKDGLPGKD-- 331
|
410 420
....*....|....*....|..
gi 564353021 1245 pglmgppgfkGKTGHPGLPGPK 1266
Cdd:NF038329 332 ----------GKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1384-1562 |
7.67e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 47.21 E-value: 7.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1384 QKGQAGEKGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDmvnyddikrfirqeiiklfder 1463
Cdd:NF038329 112 QLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGE---------------------- 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1464 mayytsrmqfpmevaaaPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIG-VGIAGENGL 1542
Cdd:NF038329 170 -----------------AGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGeDGPAGPAGD 232
|
170 180
....*....|....*....|
gi 564353021 1543 PGPPGPQGPPGYGKMGATGP 1562
Cdd:NF038329 233 GQQGPDGDPGPTGEDGPQGP 252
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
699-870 |
4.55e-04 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 44.64 E-value: 4.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 699 AGERGLKGQKGDAGNPGDPGTPGITGQPGMSGEPGVRGPAGPKGEKGDGCTACPSLQGALTDvsglPGKPGPKGEPGPEG 778
Cdd:COG5164 66 AGNQGATGPAQNQGGTTPAQNQGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTT----PPSGGSTTPPGDGG 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 779 VGRPGkPGQPGLPGVQGPPGLKGTQGEPGPPGTGAEGPQGEPGTPGLPGIQGPPGPRGPPGSTGEHGAQGPPGPKGATGP 858
Cdd:COG5164 142 STPPG-PGSTGPGGSTTPPGDGGSTTPPGPGGSTTPPDDGGSTTPPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNP 220
|
170
....*....|..
gi 564353021 859 mgPPGASISGPP 870
Cdd:COG5164 221 --PDDRGGKTGP 230
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1481-1533 |
6.22e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.40 E-value: 6.22e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 564353021 1481 PGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIG 1533
Cdd:pfam01391 3 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1480-1530 |
7.14e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.01 E-value: 7.14e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 564353021 1480 APGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKG 1530
Cdd:pfam01391 5 PPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1105-1149 |
2.13e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 37.86 E-value: 2.13e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 564353021 1105 GPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGER 1149
Cdd:pfam01391 13 GPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
1074-1285 |
4.51e-03 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 41.55 E-value: 4.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1074 PGLQGERGPTGLTGDKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAG---PAGEKGESGPPGSEGLPGPQGPAGPRGERG 1150
Cdd:COG5164 6 PGKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGsttPAGNTGGTRPAGNQGATGPAQNQGGTTPAQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 1151 PQGSSGEKGDQGFQGQPGFPgppgppgfpgkaGAPGPPGPQAEKGSEGMRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKD 1230
Cdd:COG5164 86 NQGGTRPAGNTGGTTPAGDG------------GATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPG 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564353021 1231 GKPGLRGDPGPAGPPGLMGPPGFKGKTGhPGLPGPKGDCGKPGPPGSSGRPGAEG 1285
Cdd:COG5164 154 GSTTPPGDGGSTTPPGPGGSTTPPDDGG-STTPPNKGETGTDIPTGGTPRQGPDG 207
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
766-884 |
4.91e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.51 E-value: 4.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 766 GKPGPKGEPGPEGVGRPGKPGQPGLPGVQGPPGLKGTQGEPGPPGTGAEGPQGEPGTPGLPGIQGPPGPRGPPGSTGEHG 845
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW 669
|
90 100 110
....*....|....*....|....*....|....*....
gi 564353021 846 AQGPPGPKGATGPMGPPGASISGPPGQKGSRGEKGEPGE 884
Cdd:PRK07764 670 PAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAAT 708
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
347-429 |
8.61e-03 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 40.66 E-value: 8.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353021 347 DQGLTGPSGPKGEKGARGndcvrisPDGP-----LQCAEGPKGEKGESGDLGPSGLPGPTGQKGQKGEkgdgglKGLPGK 421
Cdd:NF038329 264 DRGEAGPDGPDGKDGERG-------PVGPagkdgQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGK------DGLPGK 330
|
....*...
gi 564353021 422 PGRDGRPG 429
Cdd:NF038329 331 DGKDGQPG 338
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
384-439 |
8.71e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 35.93 E-value: 8.71e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 564353021 384 GEKGESGDLGPSGLPGPTGQKGQKGEKGDGGLKGLPGKPGRDGRPGEICVIGPKGQ 439
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| |
