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Conserved domains on  [gi|564346415|ref|XP_006236392|]
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intraflagellar transport protein 56 isoform X1 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 29-246 3.52e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 66.68  E-value: 3.52e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  29 KLEDLLSQR-DFTGAITLLEFKRHVGEQEEDTNLWIGYCAFHLGDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMY 107
Cdd:COG2956   47 ALGNLYRRRgEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDW 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 108 KQAEAAGFKAPKSRLQN-RLLFHLAHKFNDEKKLMNFHQNLQD-IKED------QLSLASIHYMRSHYQEAIDIYKRILL 179
Cdd:COG2956  127 EKAIEVLERLLKLGPENaHAYCELAELYLEQGDYDEAIEALEKaLKLDpdcaraLLLLAELYLEQGDYEEAIAALERALE 206

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564346415 180 DNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLkACNHFRLYNGKAAEAELKSLM 246
Cdd:COG2956  207 QDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQL 272
LapB super family cl34526
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 157-439 6.16e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG2956:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.56  E-value: 6.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 157 LASIHYMRSHYQEAIDIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFRLYNGK 236
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 237 AAEAELKSLMDnaSSPFEfakelirhnlvvfrggegalqvlpplvdviPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTP 316
Cdd:COG2956   94 RAEELLEKLLE--LDPDD------------------------------AEALRLLAEIYEQEGDWEKAIEVLERLLKLGP 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 317 QeyilkgvvNAALGQEMGSSYFYNDDifnfnYAQAKAAtgntsegeevflLIQSEKLKNDYIYLSW-LARCYIMNKKPRL 395
Cdd:COG2956  142 E--------NAHAYCELAELYLEQGD-----YDEAIEA------------LEKALKLDPDCARALLlLAELYLEQGDYEE 196

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 564346415 396 AWELYLKM-ETSGESFSLLQLIANDCYKMGQFyysAKAFDVLERL 439
Cdd:COG2956  197 AIAALERAlEQDPDYLPALPRLAELYEKLGDP---EEALELLRKA 238
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 29-246 3.52e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 66.68  E-value: 3.52e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  29 KLEDLLSQR-DFTGAITLLEFKRHVGEQEEDTNLWIGYCAFHLGDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMY 107
Cdd:COG2956   47 ALGNLYRRRgEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDW 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 108 KQAEAAGFKAPKSRLQN-RLLFHLAHKFNDEKKLMNFHQNLQD-IKED------QLSLASIHYMRSHYQEAIDIYKRILL 179
Cdd:COG2956  127 EKAIEVLERLLKLGPENaHAYCELAELYLEQGDYDEAIEALEKaLKLDpdcaraLLLLAELYLEQGDYEEAIAALERALE 206

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564346415 180 DNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLkACNHFRLYNGKAAEAELKSLM 246
Cdd:COG2956  207 QDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQL 272
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 33-323 7.48e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.54  E-value: 7.48e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415   33 LLSQRDFTGAITLLEfkRHVGEQEEDTNLWI--GYCAFHLGDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMY--- 107
Cdd:TIGR02917 169 ALAENRFDEARALID--EVLTADPGNVDALLlkGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFeea 246

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  108 -KQAEAAGFKAPKSRLQNRLLfhlahkfndekklmnfhqnlqdikedqlslASIHYMRSHYQEAIDIYKRILLDNREYLA 186
Cdd:TIGR02917 247 eKHADALLKKAPNSPLAHYLK------------------------------ALVDFQKKNYEDARETLQDALKSAPEYLP 296

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  187 LNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFRLYNGKAAEAELKSLMDNASSP-------------- 252
Cdd:TIGR02917 297 ALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDpaalsllgeaylal 376

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  253 ---------FEFAKEL------IRHNLVVF-------RGGEGALQVLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKD 310
Cdd:TIGR02917 377 gdfekaaeyLAKATELdpenaaARTQLGISklsqgdpSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKK 456

                         330
                  ....*....|....*.
gi 564346415  311 LE---PTTPQEYILKG 323
Cdd:TIGR02917 457 LEkkqPDNASLHNLLG 472
TPR_19 pfam14559
Tetratricopeptide repeat;
71-112 1.43e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.18  E-value: 1.43e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 564346415   71 GDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMYKQAEA 112
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEA 43
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 157-439 6.16e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.56  E-value: 6.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 157 LASIHYMRSHYQEAIDIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFRLYNGK 236
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 237 AAEAELKSLMDnaSSPFEfakelirhnlvvfrggegalqvlpplvdviPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTP 316
Cdd:COG2956   94 RAEELLEKLLE--LDPDD------------------------------AEALRLLAEIYEQEGDWEKAIEVLERLLKLGP 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 317 QeyilkgvvNAALGQEMGSSYFYNDDifnfnYAQAKAAtgntsegeevflLIQSEKLKNDYIYLSW-LARCYIMNKKPRL 395
Cdd:COG2956  142 E--------NAHAYCELAELYLEQGD-----YDEAIEA------------LEKALKLDPDCARALLlLAELYLEQGDYEE 196

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 564346415 396 AWELYLKM-ETSGESFSLLQLIANDCYKMGQFyysAKAFDVLERL 439
Cdd:COG2956  197 AIAALERAlEQDPDYLPALPRLAELYEKLGDP---EEALELLRKA 238
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 29-246 3.52e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 66.68  E-value: 3.52e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  29 KLEDLLSQR-DFTGAITLLEFKRHVGEQEEDTNLWIGYCAFHLGDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMY 107
Cdd:COG2956   47 ALGNLYRRRgEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDW 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 108 KQAEAAGFKAPKSRLQN-RLLFHLAHKFNDEKKLMNFHQNLQD-IKED------QLSLASIHYMRSHYQEAIDIYKRILL 179
Cdd:COG2956  127 EKAIEVLERLLKLGPENaHAYCELAELYLEQGDYDEAIEALEKaLKLDpdcaraLLLLAELYLEQGDYEEAIAALERALE 206

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564346415 180 DNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLkACNHFRLYNGKAAEAELKSLM 246
Cdd:COG2956  207 QDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQL 272
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 58-252 9.10e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 62.44  E-value: 9.10e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  58 DTNLWIGYCAFHLGDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMYKQAEAAGFKAPKSRLQN----RLLFHLAHK 133
Cdd:COG2956   43 EAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDaealRLLAEIYEQ 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 134 FNDEKKLMNFHQNLQDIKEDQ----LSLASIHYMRSHYQEAIDIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLA 209
Cdd:COG2956  123 EGDWEKAIEVLERLLKLGPENahayCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALE 202

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 564346415 210 VYLQQIPDSTIALNLKACNHFRLYNGKAAEAELKSLMDNASSP 252
Cdd:COG2956  203 RALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD 245
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 71-311 1.52e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 58.97  E-value: 1.52e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  71 GDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMYKQAEAAGFKAPKSRLQN-RLLFHLAHKFNDEKKL---MNFHQN 146
Cdd:COG2956   22 GQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRaEALLELAQDYLKAGLLdraEELLEK 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 147 LQDIKED----QLSLASIHYMRSHYQEAIDIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIAL 222
Cdd:COG2956  102 LLELDPDdaeaLRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARAL 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 223 NLKACNHFRLYNGKAAEAELKSLMDNASSpFEFAKELIRHNLVVFRGGEGALQVLPPLVDVIPE--ARLNLVIYYLRQDD 300
Cdd:COG2956  182 LLLAELYLEQGDYEEAIAALERALEQDPD-YLPALPRLAELYEKLGDPEEALELLRKALELDPSddLLLALADLLERKEG 260

                        250
                 ....*....|.
gi 564346415 301 VQEAYNLIKDL 311
Cdd:COG2956  261 LEAALALLERQ 271
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
58-243 2.50e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 57.71  E-value: 2.50e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  58 DTNLWIGYCAFHLGDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMYKQAEAAGFKApksrlqnrllfhLAHKFNDE 137
Cdd:COG0457    9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQA------------LELDPDDA 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 138 KKLMNfhqnlqdikedqlsLASIHYMRSHYQEAIDIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPD 217
Cdd:COG0457   77 EALNN--------------LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPD 142

                        170       180
                 ....*....|....*....|....*.
gi 564346415 218 STIALNLKACNHFRLYNGKAAEAELK 243
Cdd:COG0457  143 DADALYNLGIALEKLGRYEEALELLE 168
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
33-261 7.88e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.17  E-value: 7.88e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  33 LLSQRDFTGAITLLEFKRHVGEQEEDTNLWIGYCAFHLGDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMYKQAEA 112
Cdd:COG0457   18 YRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALE 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 113 AGFKApksrlqnrllfhLAHKFNDEKKLMNfhqnlqdikedqlsLASIHYMRSHYQEAIDIYKRILLDNREYLALNVYVA 192
Cdd:COG0457   98 DYDKA------------LELDPDDAEALYN--------------LGLALLELGRYDEAIEAYERALELDPDDADALYNLG 151

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564346415 193 LCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFRLYNGKAAEAELKSLMDNASSPFEFAKELIR 261
Cdd:COG0457  152 IALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALA 220
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 63-218 7.38e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 48.65  E-value: 7.38e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  63 IGYCAFHLGDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMYKQAEAAgfkapksrlqnrllfhlahkfndekklmn 142
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVL----------------------------- 60

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564346415 143 FHQNLQDIKED---QLSLASIHYMRSHYQEAIDIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDS 218
Cdd:COG4783   61 LHEALELDPDEpeaRLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 45-178 7.10e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.38  E-value: 7.10e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  45 LLEFKRHVGEQEEDTNLWI--GYCAFHLGDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMYKQAEAAGFKApksrl 122
Cdd:COG4235    3 IARLRQALAANPNDAEGWLllGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA----- 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 564346415 123 qnrllfhLAHKFNDEKKLMNfhqnlqdikedqlsLASIHYMRSHYQEAIDIYKRIL 178
Cdd:COG4235   78 -------LALDPDNPEALYL--------------LGLAAFQQGDYAEAIAAWQKLL 112
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 33-323 7.48e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.54  E-value: 7.48e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415   33 LLSQRDFTGAITLLEfkRHVGEQEEDTNLWI--GYCAFHLGDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMY--- 107
Cdd:TIGR02917 169 ALAENRFDEARALID--EVLTADPGNVDALLlkGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFeea 246

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  108 -KQAEAAGFKAPKSRLQNRLLfhlahkfndekklmnfhqnlqdikedqlslASIHYMRSHYQEAIDIYKRILLDNREYLA 186
Cdd:TIGR02917 247 eKHADALLKKAPNSPLAHYLK------------------------------ALVDFQKKNYEDARETLQDALKSAPEYLP 296

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  187 LNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFRLYNGKAAEAELKSLMDNASSP-------------- 252
Cdd:TIGR02917 297 ALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDpaalsllgeaylal 376

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  253 ---------FEFAKEL------IRHNLVVF-------RGGEGALQVLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKD 310
Cdd:TIGR02917 377 gdfekaaeyLAKATELdpenaaARTQLGISklsqgdpSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKK 456

                         330
                  ....*....|....*.
gi 564346415  311 LE---PTTPQEYILKG 323
Cdd:TIGR02917 457 LEkkqPDNASLHNLLG 472
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 33-342 4.04e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 46.23  E-value: 4.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415   33 LLSQRDFTGAITLLEFKRHVGEQEEDTNLWIGYCAFHLGDYKRALEEYENAAKEENCN-PEVWVNLACTYFFLGM----- 106
Cdd:TIGR02917  66 YLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGaAELLALRGLAYLGLGQlelaq 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  107 --YKQAEAAGFKAPKSRLQnrlLFHLAHKFNDEKKLMNF-HQNLQ-DIKE-DQLSL-ASIHYMRSHYQEAIDIYKRILLD 180
Cdd:TIGR02917 146 ksYEQALAIDPRSLYAKLG---LAQLALAENRFDEARALiDEVLTaDPGNvDALLLkGDLLLSLGNIELALAAYRKAIAL 222

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  181 NREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFRlyNGKAAEAeLKSLMDNASSPFEFAKELI 260
Cdd:TIGR02917 223 RPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQ--KKNYEDA-RETLQDALKSAPEYLPALL 299

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  261 RHNLVVFRGG--EGALQVLPPLVDVIPE---ARLNLVIYYLRQDDVQEAYNLIKDLEPTTPqeyilkgvVNAALGQEMGS 335
Cdd:TIGR02917 300 LAGASEYQLGnlEQAYQYLNQILKYAPNshqARRLLASIQLRLGRVDEAIATLSPALGLDP--------DDPAALSLLGE 371


                  ....*..
gi 564346415  336 SYFYNDD 342
Cdd:TIGR02917 372 AYLALGD 378
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 32-113 6.98e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.29  E-value: 6.98e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  32 DLLSQRDFTGAITLLE-----FKRHvgEQEEDTNLWIGYCAFHLGDYKRALEEYENAAK---EENCNPEVWVNLACTYFF 103
Cdd:COG1729    2 ALLKAGDYDEAIAAFKaflkrYPNS--PLAPDALYWLGEAYYALGDYDEAAEAFEKLLKrypDSPKAPDALLKLGLSYLE 79

                         90
                 ....*....|
gi 564346415 104 LGMYKQAEAA 113
Cdd:COG1729   80 LGDYDKARAT 89
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 34-402 7.25e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.46  E-value: 7.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415   34 LSQRDFTGAITLLEFKRHVGEQEEDTNLWIGYCAFHLGDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMYKQAEAA 113
Cdd:TIGR02917 408 LSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREA 487

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  114 GFKAPKSRLQN-RLLFHLAHKFNDEKKLMNFHQNLQDI-------KEDQLSLASIHYMRSHYQEAIDIYKR-ILLDNREY 184
Cdd:TIGR02917 488 FEKALSIEPDFfPAAANLARIDIQEGNPDDAIQRFEKVltidpknLRAILALAGLYLRTGNEEEAVAWLEKaAELNPQEI 567

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  185 ---LALNVYvalcYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFRLYNGKAAEAELKSLMDNASSPFEFAKELIr 261
Cdd:TIGR02917 568 epaLALAQY----YLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLA- 642

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  262 HNLVVFRGGEGALQVLPPLVDVIP---EARLNLVIYYLRQDDVQEAYNLIKDLEPTTPqeyilkgvvNAALGQEM-GSSY 337
Cdd:TIGR02917 643 DAYAVMKNYAKAITSLKRALELKPdntEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP---------KAALGFELeGDLY 713

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  338 F----YNDDIFNFNYAQAKA--------------ATGNTSEGEEVFLLIQSEKlKNDYIYLSWLARCYIMNKKPRLAWEL 399
Cdd:TIGR02917 714 LrqkdYPAAIQAYRKALKRApssqnaiklhrallASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKH 792


                  ...
gi 564346415  400 YLK 402
Cdd:TIGR02917 793 YQT 795
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 31-113 8.55e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.49  E-value: 8.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  31 EDLLSQRDFTGAITLLEfkRHVGEQEEDTNLW--IGYCAFHLGDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMYK 108
Cdd:COG4783   12 QALLLAGDYDEAEALLE--KALELDPDNPEAFalLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89


                 ....*
gi 564346415 109 QAEAA 113
Cdd:COG4783   90 EALAL 94
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 30-230 1.14e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 44.98  E-value: 1.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  30 LEDLLSQRDFTGAITLLEFKRHVGEQEEDTNLWIGYCAFHLGDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMYKQ 109
Cdd:COG3914   85 ALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEE 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 110 AEAAgfkapksrlqnrllFHLAHKFNDEkkLMNFHQNlqdikedqlsLASIHYMRSHYQEAIDIYKRILLDNREYLALNV 189
Cdd:COG3914  165 AIAA--------------LRRALELDPD--NAEALNN----------LGNALQDLGRLEEAIAAYRRALELDPDNADAHS 218

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 564346415 190 YVALCYYKL---DYYDVSQEVLAVYLQQ-----------IPDSTIALNLKACNHF 230
Cdd:COG3914  219 NLLFALRQAcdwEVYDRFEELLAALARGpselspfallyLPDDDPAELLALARAW 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
62-192 1.57e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.46  E-value: 1.57e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  62 WIGYCAFHLGDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMYKQAEAAGFKAPKSRLQNRLLFHLAHKFNDEKKLM 141
Cdd:COG0457  115 NLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAE 194

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 564346415 142 NFHQNLQDIKEDQLSLASIHYMRSHYQEAIDIYKRILLDNREYLALNVYVA 192
Cdd:COG0457  195 VLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
64-232 5.86e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 41.44  E-value: 5.86e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  64 GYCAFHLGDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMYKQAEAAgFKApksrlqnrllfHLAHKFNDEKKLMNf 143
Cdd:COG4785   80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALED-FDR-----------ALELDPDYAYAYLN- 146

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 144 hqnlqdikedqlsLASIHYMRSHYQEAIDIYKR--ILLDNREYLALNVYvaLCYYKLDYydvsQEVLAVYLQQIPDSTIA 221
Cdd:COG4785  147 -------------RGIALYYLGRYELAIADLEKalELDPNDPERALWLY--LAERKLDP----EKALALLLEDWATAYLL 207

                        170
                 ....*....|...
gi 564346415 222 LNL--KACNHFRL 232
Cdd:COG4785  208 QGDteEARELFKL 220
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 144-317 6.78e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 42.29  E-value: 6.78e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 144 HQNLQDIKEDQLSLASIHYMRSHYQEAIDIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALN 223
Cdd:COG3914   71 AAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 224 LKACNHFRLYNGKAAEAELkslmdnasspfefakelirhnlvvfrggEGALQVLPPLvdviPEARLNLVIYYLRQDDVQE 303
Cdd:COG3914  151 NLGEALRRLGRLEEAIAAL----------------------------RRALELDPDN----AEALNNLGNALQDLGRLEE 198

                        170
                 ....*....|....*..
gi 564346415 304 A---YNLIKDLEPTTPQ 317
Cdd:COG3914  199 AiaaYRRALELDPDNAD 215
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 27-117 7.94e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.33  E-value: 7.94e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  27 IPKLEDLLSQRDFTGAITLLEFKRHVGEQEEDTNLWIGYCAFHLGDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGM 106
Cdd:COG5010   24 VEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGD 103

                         90
                 ....*....|.
gi 564346415 107 YKQAEAAGFKA 117
Cdd:COG5010  104 KDEAKEYYEKA 114
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
66-186 1.03e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.23  E-value: 1.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  66 CAFHLGDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMYKQAEAagfkapksrlqnrllFHLAHKFNdekklmnfhq 145
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA---------------LEKALKLD---------- 55

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 564346415 146 nlQDIKEDQLSLASIHYMRSHYQEAIDIYKRILLDNREYLA 186
Cdd:COG3063   56 --PNNAEALLNLAELLLELGDYDEALAYLERALELDPSALR 94
TPR_19 pfam14559
Tetratricopeptide repeat;
71-112 1.43e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.18  E-value: 1.43e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 564346415   71 GDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMYKQAEA 112
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEA 43
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 33-113 2.85e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.25  E-value: 2.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  33 LLSQRDFTGAITLLEFKRHVGEQEEDTNLWIGYCAFHLGDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMYKQAEA 112
Cdd:COG4783   48 LLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127


                 .
gi 564346415 113 A 113
Cdd:COG4783  128 A 128
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 154-246 3.08e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.25  E-value: 3.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 154 QLSLASIHYMRSHYQEAIDIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFRLY 233
Cdd:COG4783   41 FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120

                         90
                 ....*....|...
gi 564346415 234 NGKAAEAELKSLM 246
Cdd:COG4783  121 RPDEAIAALEKAL 133
TPR_19 pfam14559
Tetratricopeptide repeat;
167-226 5.83e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 35.25  E-value: 5.83e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  167 YQEAIDIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKA 226
Cdd:pfam14559   4 YAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLA 63
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
33-113 6.07e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.30  E-value: 6.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415  33 LLSQRDFTGAITLLEFKRHVGEQEEDTNLWIGYCAFHLGDYKRALeEYENAAKEENCNPEVWVNLACTYFFLGMYKQAEA 112
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80


                 .
gi 564346415 113 A 113
Cdd:COG3063   81 Y 81
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 157-439 6.16e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.56  E-value: 6.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 157 LASIHYMRSHYQEAIDIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFRLYNGK 236
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 237 AAEAELKSLMDnaSSPFEfakelirhnlvvfrggegalqvlpplvdviPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTP 316
Cdd:COG2956   94 RAEELLEKLLE--LDPDD------------------------------AEALRLLAEIYEQEGDWEKAIEVLERLLKLGP 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564346415 317 QeyilkgvvNAALGQEMGSSYFYNDDifnfnYAQAKAAtgntsegeevflLIQSEKLKNDYIYLSW-LARCYIMNKKPRL 395
Cdd:COG2956  142 E--------NAHAYCELAELYLEQGD-----YDEAIEA------------LEKALKLDPDCARALLlLAELYLEQGDYEE 196

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 564346415 396 AWELYLKM-ETSGESFSLLQLIANDCYKMGQFyysAKAFDVLERL 439
Cdd:COG2956  197 AIAALERAlEQDPDYLPALPRLAELYEKLGDP---EEALELLRKA 238
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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