|
Name |
Accession |
Description |
Interval |
E-value |
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
94-608 |
1.60e-171 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 498.44 E-value: 1.60e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVP------IPEHIDIYHLTREMP-PSDKTPLQCV 166
Cdd:COG0488 3 NLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPdsgevsIPKGLRIGYLPQEPPlDDDLTVLDTV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 167 MEVDTERAMLEREAERL----AHEDAECEKLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVA 242
Cdd:COG0488 83 LDGDAELRALEAELEELeaklAEPDEDLERLAELQEEFEALGGWEAEARAEEILSGLGFPEEDLDRPVSELSGGWRRRVA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 243 LARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGNYDQYVKTRL 322
Cdd:COG0488 163 LARALLSEPDLLLLDEPTNHLDLESIEWLEEFLKNYPGTVLVVSHDRYFLDRVATRILELDRGKLTLYPGNYSAYLEQRA 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 323 ELEENQMKRFHWEQDQIAHMKNYIARFGhGSAKLARQAQSKEKTLQKMMAsglTERVVSDKTLSFYFPPCGKIPPPVIMV 402
Cdd:COG0488 243 ERLEQEAAAYAKQQKKIAKEEEFIRRFR-AKARKAKQAQSRIKALEKLER---EEPPRRDKTVEIRFPPPERLGKKVLEL 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 403 QNVSFKYtkDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHlQEQLDLDLS 482
Cdd:COG0488 319 EGLSKSY--GDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKLGETVKIGYFDQH-QEELDPDKT 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 483 PLEYMMKCYPEIKEKeEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADA 562
Cdd:COG0488 396 VLDELRDGAPGGTEQ-EVRGYLGRFLFSGDDAFKPVGVLSGGEKARLALAKLLLSPPNVLLLDEPTNHLDIETLEALEEA 474
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 564345351 563 INEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEH 608
Cdd:COG0488 475 LDDFPGTVLLVSHDRYFLDRVATRILEFEDGGVREYPGGYDDYLEK 520
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
71-611 |
2.71e-156 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 466.64 E-value: 2.71e-156
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 71 KAAARAVTGVLASH------PNSTDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVP-IP 143
Cdd:PLN03073 153 EAAKAGMPGVYVNHdgngggPAIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDgIP 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 144 EHIDIYHLTREMPPSDKTPLQCVMEVDTERA-MLEREAERLAH----------------------EDAECEKLMELYERL 200
Cdd:PLN03073 233 KNCQILHVEQEVVGDDTTALQCVLNTDIERTqLLEEEAQLVAQqrelefetetgkgkgankdgvdKDAVSQRLEEIYKRL 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 201 EELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKR 280
Cdd:PLN03073 313 ELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPK 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 281 ILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGNYDQYVKTRLELEENQMKRFHWEQDQIAHMKNYIARFGHgSAKLARQA 360
Cdd:PLN03073 393 TFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRY-NAKRASLV 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 361 QSKEKTLQKMmasGLTERVVSDKTLSFYFP-PCGKIPPPVIMVQNVSFKYtKDGPCIYNNLEFGIDLDTRVALVGPNGAG 439
Cdd:PLN03073 472 QSRIKALDRL---GHVDAVVNDPDYKFEFPtPDDRPGPPIISFSDASFGY-PGGPLLFKNLNFGIDLDSRIAMVGPNGIG 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 440 KSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEkEEMRKIIGRYGLTGKQQVSPIR 519
Cdd:PLN03073 548 KSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE-QKLRAHLGSFGVTGNLALQPMY 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 520 NLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWP 599
Cdd:PLN03073 627 TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFH 706
|
570
....*....|..
gi 564345351 600 GDILAYKEHLKS 611
Cdd:PLN03073 707 GTFHDYKKTLQS 718
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
104-609 |
5.88e-100 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 318.27 E-value: 5.88e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 104 LLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVgKRE-------VPIPEHIDIYHLTREMPPSDKTPLQCVMEVDTERAML 176
Cdd:PRK10636 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALL-KNEisadggsYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 177 EREAErLAHEDAECEKLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLL 256
Cdd:PRK10636 95 EAQLH-DANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 257 DEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGNYDQYVKTRLELEENQMKRFHWEQ 336
Cdd:PRK10636 174 DEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATRLAQQQAMYESQQ 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 337 DQIAHMKNYIARFGHGSAKlARQAQSKEKTLQKMmasgltERVV---SDKTLSFYFPPCGKIPPPVIMVQNVSFKYTKDg 413
Cdd:PRK10636 254 ERVAHLQSYIDRFRAKATK-AKQAQSRIKMLERM------ELIApahVDNPFHFSFRAPESLPNPLLKMEKVSAGYGDR- 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 414 pCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPE 493
Cdd:PRK10636 326 -IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQ 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 494 IKEkEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLV 573
Cdd:PRK10636 405 ELE-QKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVV 483
|
490 500 510
....*....|....*....|....*....|....*.
gi 564345351 574 SHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHL 609
Cdd:PRK10636 484 SHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWL 519
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
94-615 |
1.07e-70 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 237.87 E-value: 1.07e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDIYHLTR-------EMPPSDKTPLQCV 166
Cdd:PRK15064 6 NITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERlgklrqdQFAFEEFTVLDTV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 167 MEVDTE--RAMLEREAERLAHEDAECE--KLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVA 242
Cdd:PRK15064 86 IMGHTElwEVKQERDRIYALPEMSEEDgmKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 243 LARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGNYDQYVKTRL 322
Cdd:PRK15064 166 LAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYMTAAT 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 323 ELEENQMKRFHWEQDQIAHMKNYIARFGHGSAKlARQAQSKEKTLQKMMasgLTE-RVVSDKTLSFYFPPCGKIPPPVIM 401
Cdd:PRK15064 246 QARERLLADNAKKKAQIAELQSFVSRFSANASK-AKQATSRAKQIDKIK---LEEvKPSSRQNPFIRFEQDKKLHRNALE 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 402 VQNVSFKYtkDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDL 481
Cdd:PRK15064 322 VENLTKGF--DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDL 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 482 SPLEYMMKcYPEIKEKEEM-RKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALA 560
Cdd:PRK15064 400 TLFDWMSQ-WRQEGDDEQAvRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLN 478
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 564345351 561 DAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDilaYKEHLKSKLVD 615
Cdd:PRK15064 479 MALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGT---YEEYLRSQGIE 530
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
101-616 |
4.32e-62 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 215.18 E-value: 4.32e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 101 GQELLSDTKLELNSGRRYGLIGLNGIGKSMLL---SAVGKR---EVPIPEHIDIYHLTREmPPSD--KTPLQCVME-VDT 171
Cdd:TIGR03719 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLrimAGVDKDfngEARPQPGIKVGYLPQE-PQLDptKTVRENVEEgVAE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 172 ERAMLEREAE---RLAHEDAECEKLMELYERLEE-LDADKA---EMRASRILHGLGFTPAMQrkKLKDFSGGWRMRVALA 244
Cdd:TIGR03719 96 IKDALDRFNEisaKYAEPDADFDKLAAEQAELQEiIDAADAwdlDSQLEIAMDALRCPPWDA--DVTKLSGGERRRVALC 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 245 RALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGNYDQYV---KTR 321
Cdd:TIGR03719 174 RLLLSKPDMLLLDEPTNHLDAESVAWLERHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLeqkQKR 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 322 LELEENQ----MKRFHWEQDQIAHmknyiarfghgSAKlARQAQSKEK--TLQKMMASGLTERvvsDKTLSFYFPPCGKI 395
Cdd:TIGR03719 254 LEQEEKEesarQKTLKRELEWVRQ-----------SPK-GRQAKSKARlaRYEELLSQEFQKR---NETAEIYIPPGPRL 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 396 PPPVIMVQNVSFKYtkDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHlQE 475
Cdd:TIGR03719 319 GDKVIEAENLTKAF--GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIGETVKLAYVDQS-RD 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 476 QLDLDLSPLEYMMKCYPEIK-EKEEM--RKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLD 552
Cdd:TIGR03719 396 ALDPNKTVWEEISGGLDIIKlGKREIpsRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564345351 553 IETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKW-PGDILAYKEHLKSKLVDE 616
Cdd:TIGR03719 476 VETLRALEEALLNFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWfEGNFSEYEEDKKRRLGED 540
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
90-591 |
3.44e-56 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 200.95 E-value: 3.44e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKrEVPIPEHIDIYH----LTR--EMPPSDK--T 161
Cdd:PRK11147 4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNG-EVLLDDGRIIYEqdliVARlqQDPPRNVegT 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 162 PLQCVMEVDTERAMLEREAERLAHE------DAECEKLMELYERLEELDADKAEMRASRILHGLGFTPAmqrKKLKDFSG 235
Cdd:PRK11147 83 VYDFVAEGIEEQAEYLKRYHDISHLvetdpsEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPD---AALSSLSG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 236 GWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGNYD 315
Cdd:PRK11147 160 GWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYD 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 316 QYVKTR---LELEENQMKRFhweQDQIAHMKNYI-----ARF----GHGSA-KLARQAQSKEKTLQ---KMMasglterv 379
Cdd:PRK11147 240 QYLLEKeeaLRVEELQNAEF---DRKLAQEEVWIrqgikARRtrneGRVRAlKALRRERSERREVMgtaKMQ-------- 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 380 VSDKTLSfyfppcGKIpppVIMVQNVSfkYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR 459
Cdd:PRK11147 309 VEEASRS------GKI---VFEMENVN--YQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIH 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 460 KHSHVKIGRYHQHlQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIG---RYGLTGKQQVSPIRNLSDGQKCRVCLAWLAW 536
Cdd:PRK11147 378 CGTKLEVAYFDQH-RAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGylqDFLFHPKRAMTPVKALSGGERNRLLLARLFL 456
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 564345351 537 QNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCE 591
Cdd:PRK11147 457 KPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFE 511
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
119-576 |
7.72e-51 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 184.55 E-value: 7.72e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 119 GLIGLNGIGKSMLL---SAVGKR---EVPIPEHIDIYHLTREmPPSD--KTPLQCVME-VDTERAMLER--E-AERLAHE 186
Cdd:PRK11819 37 GVLGLNGAGKSTLLrimAGVDKEfegEARPAPGIKVGYLPQE-PQLDpeKTVRENVEEgVAEVKAALDRfnEiYAAYAEP 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 187 DAECEKLME----LYERLEELDADKAEMRASRILHGLGFTPAMQrkKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNH 262
Cdd:PRK11819 116 DADFDALAAeqgeLQEIIDAADAWDLDSQLEIAMDALRCPPWDA--KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNH 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 263 LDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGNYDQYVKT---RLELEENQ----MKRFHWE 335
Cdd:PRK11819 194 LDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQkakRLAQEEKQeaarQKALKRE 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 336 QDQIAHmknyiarfghgSAKlARQAQSKE--KTLQKMMASGLTERvvsDKTLSFYfppcgkIPPP------VIMVQNVSF 407
Cdd:PRK11819 274 LEWVRQ-----------SPK-ARQAKSKArlARYEELLSEEYQKR---NETNEIF------IPPGprlgdkVIEAENLSK 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 408 KYtkDGPCIYNNLEF-----GIdldtrVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHlQEQLDLDLS 482
Cdd:PRK11819 333 SF--GDRLLIDDLSFslppgGI-----VGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQS-RDALDPNKT 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 483 PLEymmkcypEIKE--------KEEM--RKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLD 552
Cdd:PRK11819 405 VWE-------EISGgldiikvgNREIpsRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
|
490 500
....*....|....*....|....
gi 564345351 553 IETIDALADAINEFEGGMMLVSHD 576
Cdd:PRK11819 478 VETLRALEEALLEFPGCAVVISHD 501
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
90-306 |
4.20e-47 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 162.23 E-value: 4.20e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDIYHltremppsdktplqcvmev 169
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS------------------- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 170 dteramlereAERLAHedaeceklmelYERLeeldadkaemrasrilhglgftpamqrkklkdfSGGWRMRVALARALFI 249
Cdd:cd03221 62 ----------TVKIGY-----------FEQL---------------------------------SGGEKMRLALAKLLLE 87
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564345351 250 RPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKK 306
Cdd:cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
400-594 |
8.18e-47 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 161.46 E-value: 8.18e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYtkDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQhlqeqldl 479
Cdd:cd03221 1 IELENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 480 dlspleymmkcypeikekeemrkiigrygltgkqqvspirnLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDAL 559
Cdd:cd03221 71 -----------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEAL 109
|
170 180 190
....*....|....*....|....*....|....*
gi 564345351 560 ADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQT 594
Cdd:cd03221 110 EEALKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144
|
|
| ABC_tran_Xtn |
pfam12848 |
ABC transporter; This domain is an extension of some members of pfam00005 and other ... |
300-370 |
6.21e-25 |
|
ABC transporter; This domain is an extension of some members of pfam00005 and other ABC-transporter families.
Pssm-ID: 463731 [Multi-domain] Cd Length: 85 Bit Score: 98.80 E-value: 6.21e-25
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564345351 300 IHMHNKKLKYYTGNYDQYVKTRLELEENQMKRFHWEQDQIAHMKNYIARFGHGsAKLARQAQSKEKTLQKM 370
Cdd:pfam12848 1 VELERGKLTTYKGNYSTFLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAK-ASKAKQAQSRIKALEKM 70
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
92-323 |
2.58e-24 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 102.24 E-value: 2.58e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 92 IINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAvgkrevpipehidiyhLTREMPPSDKTPLQCVMEVDT 171
Cdd:COG4555 4 VENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRM----------------LAGLLKPDSGSILIDGEDVRK 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 172 ERAMLERE-----AERLAHEDAECEKLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKkLKDFSGGWRMRVALARA 246
Cdd:COG4555 68 EPREARRQigvlpDERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRR-VGELSTGMKKKVALARA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 247 LFIRPFMLLLDEPTNHLDLDACVWLEEELKTFK---RILVLVSHSQDFLNGVCTNIIHMHNKKLKYY---TGNYDQYVKT 320
Cdd:COG4555 147 LVHDPKVLLLDEPTNGLDVMARRLLREILRALKkegKTVLFSSHIMQEVEALCDRVVILHKGKVVAQgslDELREEIGEE 226
|
...
gi 564345351 321 RLE 323
Cdd:COG4555 227 NLE 229
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
90-589 |
5.41e-22 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 99.98 E-value: 5.41e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQE--LLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVgKREVPIPEHIDIYHLTREMPPSDKTPLQCVM 167
Cdd:COG1123 5 LEVRDLSVRYPGGDvpAVDGVSLTIAPGETVALVGESGSGKSTLALAL-MGLLPHGGRISGEVLLDGRDLLELSEALRGR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 168 EVdterAMLEREAE------RLAHEDAECeklmelyerLEELDADKAEM--RASRILHGLGFtPAMQRKKLKDFSGGWRM 239
Cdd:COG1123 84 RI----GMVFQDPMtqlnpvTVGDQIAEA---------LENLGLSRAEAraRVLELLEAVGL-ERRLDRYPHQLSGGQRQ 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 240 RVALARALFIRPFMLLLDEPTNHLD-------LDACVWLEEELKTfkrILVLVSHSQDFLNGVCTNIIHMHNKKLkYYTG 312
Cdd:COG1123 150 RVAIAMALALDPDLLIADEPTTALDvttqaeiLDLLRELQRERGT---TVLLITHDLGVVAEIADRVVVMDDGRI-VEDG 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 313 NYDQYVKTRLELEEnqmkrfhweqdqiahmknyIARFGHGSAKLARQAQSKEKTLQkmmasgltervVSDktLSFYFPPC 392
Cdd:COG1123 226 PPEEILAAPQALAA-------------------VPRLGAARGRAAPAAAAAEPLLE-----------VRN--LSKRYPVR 273
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 393 GKIPPPVimVQNVSFKytkdgpciynnLEFGidldTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR-------KHSHVK 465
Cdd:COG1123 274 GKGGVRA--VDDVSLT-----------LRRG----ETLGLVGESGSGKSTLARLLLGLLRPTSGSILfdgkdltKLSRRS 336
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 466 IGRYHQHLQ-------EQLDldlsP-------LEYMMKCYPEIKEKEEMRKI---IGRYGLTGKQQVSPIRNLSDGQKCR 528
Cdd:COG1123 337 LRELRRRVQmvfqdpySSLN----PrmtvgdiIAEPLRLHGLLSRAERRERVaelLERVGLPPDLADRYPHELSGGQRQR 412
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564345351 529 VCLA-WLAwQNPHMLFLDEPTNHLDIET----IDALADAINEFEGGMMLVSHDFRLIQQVAQEIWV 589
Cdd:COG1123 413 VAIArALA-LEPKLLILDEPTSALDVSVqaqiLNLLRDLQRELGLTYLFISHDLAVVRYIADRVAV 477
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
105-261 |
7.58e-22 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 92.33 E-value: 7.58e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 105 LSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDI--YHLTREMPPSDKTPLQCVMEVDTERAMLEreaer 182
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLdgQDLTDDERKSLRKEIGYVFQDPQLFPRLT----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 183 lAHEDaeceklMELYERLEELDADKAEMRASRILHGLGFTPAMQRK---KLKDFSGGWRMRVALARALFIRPFMLLLDEP 259
Cdd:pfam00005 76 -VREN------LRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPvgeRPGTLSGGQRQRVAIARALLTKPKLLLLDEP 148
|
..
gi 564345351 260 TN 261
Cdd:pfam00005 149 TA 150
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
94-583 |
8.85e-21 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 96.02 E-value: 8.85e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAV-GKREVPIPEHIDIYHLTR-------EMPPSDKTPL-Q 164
Cdd:TIGR03269 5 NLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLrGMDQYEPTSGRIIYHVALcekcgyvERPSKVGEPCpV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 165 C-----VMEVD------TERA--------MLEREAErLAHEDAECEKLMELYERLEeLDADKAEMRASRILHGLGFTPAM 225
Cdd:TIGR03269 85 CggtlePEEVDfwnlsdKLRRrirkriaiMLQRTFA-LYGDDTVLDNVLEALEEIG-YEGKEAVGRAVDLIEMVQLSHRI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 226 QRKKlKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVW----LEEELKTFKRILVLVSHSQDFLNGVCTNIIH 301
Cdd:TIGR03269 163 THIA-RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLvhnaLEEAVKASGISMVLTSHWPEVIEDLSDKAIW 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 302 MHNKKLKyYTGNYDQYVKTRLELEENqmkrfhWEQDQIAHMKNYIARFghgsaklarqaqskeKTLQKMMASglTERVVs 381
Cdd:TIGR03269 242 LENGEIK-EEGTPDEVVAVFMEGVSE------VEKECEVEVGEPIIKV---------------RNVSKRYIS--VDRGV- 296
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 382 dktlsfyfppcgkipppVIMVQNVSFKytkdgpcIYNNLEFGIdldtrvalVGPNGAGKSTLLKLLTGELLPTDG----- 456
Cdd:TIGR03269 297 -----------------VKAVDNVSLE-------VKEGEIFGI--------VGTSGAGKTTLSKIIAGVLEPTSGevnvr 344
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 457 -------------MIRKHSHVKIGRYHQ------------HLQEQLDLDLsPLEY-MMKCYPEIK----EKEEMRKIIGR 506
Cdd:TIGR03269 345 vgdewvdmtkpgpDGRGRAKRYIGILHQeydlyphrtvldNLTEAIGLEL-PDELaRMKAVITLKmvgfDEEKAEEILDK 423
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 507 YGLTgkqqvspirnLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAI----NEFEGGMMLVSHDFRLIQQ 582
Cdd:TIGR03269 424 YPDE----------LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSIlkarEEMEQTFIIVSHDMDFVLD 493
|
.
gi 564345351 583 V 583
Cdd:TIGR03269 494 V 494
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
92-307 |
1.83e-20 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 89.88 E-value: 1.83e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 92 IINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGkrevpipeHIDIYH----LTREMPPSDKTPLQCVM 167
Cdd:COG4619 3 LEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALA--------DLDPPTsgeiYLDGKPLSAMPPPEWRR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 168 EV-----------DTERAMLEReAERLAHEDAECEKLMELYERLeeldadkaemrasrilhglGFTPAMQRKKLKDFSGG 236
Cdd:COG4619 75 QVayvpqepalwgGTVRDNLPF-PFQLRERKFDRERALELLERL-------------------GLPPDILDKPVERLSGG 134
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564345351 237 WRMRVALARALFIRPFMLLLDEPTNHLDLD--ACV--WLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKL 307
Cdd:COG4619 135 ERQRLALIRALLLQPDVLLLDEPTSALDPEntRRVeeLLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
91-306 |
3.58e-20 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 87.69 E-value: 3.58e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 91 HIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDIyhltremppsdktplqcvmevd 170
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI---------------------- 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 171 teramlereaerlahedaeceklmelyerleeLDADKAEMRASRILHGLGFTPamqrkklkDFSGGWRMRVALARALFIR 250
Cdd:cd00267 59 --------------------------------DGKDIAKLPLEELRRRIGYVP--------QLSGGQRQRVALARALLLN 98
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564345351 251 PFMLLLDEPTNHLDLDACVWLEEELKTF---KRILVLVSHSQDFLNGVCTNIIHMHNKK 306
Cdd:cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELaeeGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
402-592 |
4.01e-20 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 89.06 E-value: 4.01e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 402 VQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR------KHSHVKIGRYH----- 470
Cdd:cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLvdgkdlTKLSLKELRRKvglvf 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 471 QHLQEQL-------DLDLSPLEYMMkcypeikEKEEMRKIIG----RYGLTGKQQVSPiRNLSDGQKCRVCLAWLAWQNP 539
Cdd:cd03225 82 QNPDDQFfgptveeEVAFGLENLGL-------PEEEIEERVEealeLVGLEGLRDRSP-FTLSGGQKQRVAIAGVLAMDP 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 564345351 540 HMLFLDEPTNHLDIETIDALADAINEF-EGGM--MLVSHDFRLIQQVAQEIWVCEK 592
Cdd:cd03225 154 DILLLDEPTAGLDPAGRRELLELLKKLkAEGKtiIIVTHDLDLLLELADRVIVLED 209
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
402-576 |
9.86e-20 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 87.97 E-value: 9.86e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 402 VQNVSFKYtkDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR------KHSHVKIGRYHQHLQE 475
Cdd:cd03235 2 VEDLTVSY--GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRvfgkplEKERKRIGYVPQRRSI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 476 QLDLDLSPLEY-MMKCYPEI--------KEKEEMRKIIGRYGLTGKQQvSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDE 546
Cdd:cd03235 80 DRDFPISVRDVvLMGLYGHKglfrrlskADKAKVDEALERVGLSELAD-RQIGELSGGQQQRVLLARALVQDPDLLLLDE 158
|
170 180 190
....*....|....*....|....*....|...
gi 564345351 547 PTNHLDIETIDALADAINEF--EG-GMMLVSHD 576
Cdd:cd03235 159 PFAGVDPKTQEDIYELLRELrrEGmTILVVTHD 191
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
400-611 |
1.76e-19 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 87.77 E-value: 1.76e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTkDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR-------KHSHVKIGRY--- 469
Cdd:COG1122 1 IELENLSFSYP-GGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLvdgkditKKNLRELRRKvgl 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 470 -HQHLQEQL-------DLDLSPLEYMMkcypeikEKEEMRKII----GRYGLTGKQQVSPiRNLSDGQKCRVCLAW-LAw 536
Cdd:COG1122 80 vFQNPDDQLfaptveeDVAFGPENLGL-------PREEIRERVeealELVGLEHLADRPP-HELSGGQKQRVAIAGvLA- 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 537 QNPHMLFLDEPTNHLDIETIDALADAINEF--EG-GMMLVSHDFRLIQQVAQEIWVCEKQTITKW--PGDILAYKEHLKS 611
Cdd:COG1122 151 MEPEVLVLDEPTAGLDPRGRRELLELLKRLnkEGkTVIIVTHDLDLVAELADRVIVLDDGRIVADgtPREVFSDYELLEE 230
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
400-576 |
4.59e-19 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 86.40 E-value: 4.59e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDG--MIRKHS--------HVKIGRY 469
Cdd:cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGtaYINGYSirtdrkaaRQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 470 HQHlqEQLDLDLSPLEYM-----MKCYPEIKEKEEMRKIIGRYGLTGKQQvSPIRNLSDGQKCRVCLAWLAWQNPHMLFL 544
Cdd:cd03263 81 PQF--DALFDELTVREHLrfyarLKGLPKSEIKEEVELLLRVLGLTDKAN-KRARTLSGGMKRKLSLAIALIGGPSVLLL 157
|
170 180 190
....*....|....*....|....*....|....
gi 564345351 545 DEPTNHLDIETIDALADAINEFEGG--MMLVSHD 576
Cdd:cd03263 158 DEPTSGLDPASRRAIWDLILEVRKGrsIILTTHS 191
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
90-295 |
5.67e-19 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 85.61 E-value: 5.67e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAvgkrevpipehidIYHLtreMPPSDKTplqcvMEV 169
Cdd:COG4133 3 LEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRI-------------LAGL---LPPSAGE-----VLW 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 170 DTERAMLEREAER-----LAHEDAeceklmeLYERL---EELD-------ADKAEMRASRILHGLGFTPAMQRKkLKDFS 234
Cdd:COG4133 62 NGEPIRDAREDYRrrlayLGHADG-------LKPELtvrENLRfwaalygLRADREAIDEALEAVGLAGLADLP-VRQLS 133
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564345351 235 GGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFK---RILVLVSHSQDFLNGV 295
Cdd:COG4133 134 AGQKRRVALARLLLSPAPLWLLDEPFTALDAAGVALLAELIAAHLargGAVLLTTHQPLELAAA 197
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
419-612 |
9.12e-19 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 90.39 E-value: 9.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 419 NLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQ-------------------HLQEQL-- 477
Cdd:PRK11147 21 NAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQdpprnvegtvydfvaegieEQAEYLkr 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 478 ------DLDLSPLEYMMKCYPEIKEKEE----------MRKIIGRYGLTGKQQVSpirNLSDGQKCRVCLAWLAWQNPHM 541
Cdd:PRK11147 101 yhdishLVETDPSEKNLNELAKLQEQLDhhnlwqlenrINEVLAQLGLDPDAALS---SLSGGWLRKAALGRALVSNPDV 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564345351 542 LFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDilaYKEHLKSK 612
Cdd:PRK11147 178 LLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGN---YDQYLLEK 245
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
400-592 |
1.18e-18 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 83.59 E-value: 1.18e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRkhshvkIGryhqhlqeqlDL 479
Cdd:cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL------ID----------GV 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 480 DLSPLeymmkcypeikEKEEMRKIIG-------RYGLTgkqqvspIRN--LSDGQKCRVCLAWLAWQNPHMLFLDEPTNH 550
Cdd:cd03228 65 DLRDL-----------DLESLRKNIAyvpqdpfLFSGT-------IREniLSGGQRQRIAIARALLRDPPILILDEATSA 126
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 564345351 551 LDIETIDALADAINEFEGG--MMLVSHDFRLIQQvAQEIWVCEK 592
Cdd:cd03228 127 LDPETEALILEALRALAKGktVIVIAHRLSTIRD-ADRIIVLDD 169
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
402-589 |
1.27e-18 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 83.06 E-value: 1.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 402 VQNVSFKYtkDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRkhshvkigryhqhlqeqldLDL 481
Cdd:cd00267 2 IENLSFRY--GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL-------------------IDG 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 482 SPLEYmmkcypeiKEKEEMRKIIGRygltgkqqvspIRNLSDGQKCRVCLAwLAW-QNPHMLFLDEPTNHLDIETIDALA 560
Cdd:cd00267 61 KDIAK--------LPLEELRRRIGY-----------VPQLSGGQRQRVALA-RALlLNPDLLLLDEPTSGLDPASRERLL 120
|
170 180 190
....*....|....*....|....*....|..
gi 564345351 561 DAINEF-EGGMM--LVSHDFRLIQQVAQEIWV 589
Cdd:cd00267 121 ELLRELaEEGRTviIVTHDPELAELAADRVIV 152
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
396-584 |
2.77e-18 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 84.76 E-value: 2.77e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 396 PPPVIMVQNVSFKYtkDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR------KHSHVKIGrY 469
Cdd:COG1121 3 MMPAIELENLTVSY--GGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRlfgkppRRARRRIG-Y 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 470 -HQHLQEQLDLDLSPLEY-MMKCYPEI--------KEKEEMRKIIGRYGLTGKQQvSPIRNLSDGQKCRVCLA-WLAwQN 538
Cdd:COG1121 80 vPQRAEVDWDFPITVRDVvLMGRYGRRglfrrpsrADREAVDEALERVGLEDLAD-RPIGELSGGQQQRVLLArALA-QD 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 564345351 539 PHMLFLDEPTNHLDIETIDALADAINEF--EG-GMMLVSHDFRLIQQVA 584
Cdd:COG1121 158 PDLLLLDEPFAGVDAATEEALYELLRELrrEGkTILVVTHDLGAVREYF 206
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
90-307 |
2.99e-18 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 82.45 E-value: 2.99e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSavgkrevpipehidiyHLTREMPPSdktplqcvmev 169
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIK----------------IILGLLKPD----------- 53
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 170 dteramlEREAERLAHEDAEceklmelyerleelDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFI 249
Cdd:cd03230 54 -------SGEIKVLGKDIKK--------------EPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLALAQALLH 112
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564345351 250 RPFMLLLDEPTNHLDLDACVWLEEELKTFKR---ILVLVSHSQDFLNGVCTNIIHMHNKKL 307
Cdd:cd03230 113 DPELLILDEPTSGLDPESRREFWELLRELKKegkTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
90-323 |
4.73e-18 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 83.57 E-value: 4.73e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSavgkrevpipehidiyHLTREMPPSDKTplqcvMEV 169
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIR----------------MLLGLLRPTSGE-----VRV 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 170 DTERAMLEREA--ERLA--------HEDAECEKLMELYERLEELDADKAEMRASRILHGLGFTPAMqRKKLKDFSGGWRM 239
Cdd:COG1131 60 LGEDVARDPAEvrRRIGyvpqepalYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAA-DRKVGTLSGGMKQ 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 240 RVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFK---RILVLVSHSQDFLNGVCTNIIHMHNKKLKyYTGNYDQ 316
Cdd:COG1131 139 RLGLALALLHDPELLILDEPTSGLDPEARRELWELLRELAaegKTVLLSTHYLEEAERLCDRVAIIDKGRIV-ADGTPDE 217
|
....*..
gi 564345351 317 YVKTRLE 323
Cdd:COG1131 218 LKARLLE 224
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
398-576 |
5.02e-18 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 82.91 E-value: 5.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 398 PVIMVQNVSFKYtkDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR---KHSHVKIGRYHQHL- 473
Cdd:COG4133 1 MMLEAENLSCRR--GERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLwngEPIRDAREDYRRRLa 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 474 ----QEQLDLDLSPLEYM---MKCYPEIKEKEEMRKIIGRYGLTGKQQVsPIRNLSDGQKCRVCLA--WLAwqNPHMLFL 544
Cdd:COG4133 79 ylghADGLKPELTVRENLrfwAALYGLRADREAIDEALEAVGLAGLADL-PVRQLSAGQKRRVALArlLLS--PAPLWLL 155
|
170 180 190
....*....|....*....|....*....|....*
gi 564345351 545 DEPTNHLDIETIDALADAINEF--EGGM-MLVSHD 576
Cdd:COG4133 156 DEPFTALDAAGVALLAELIAAHlaRGGAvLLTTHQ 190
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
90-307 |
1.28e-17 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 81.80 E-value: 1.28e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDIyhltremppsDKTPLQCVMEV 169
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI----------DGRDVTGVPPE 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 170 DTERAMLEREAERLAHedaeceklMELYE------RLEELDADKAEMRASRILHGLGFTPAMQRK--KLkdfSGGWRMRV 241
Cdd:cd03259 71 RRNIGMVFQDYALFPH--------LTVAEniafglKLRGVPKAEIRARVRELLELVGLEGLLNRYphEL---SGGQQQRV 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 242 ALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKT----FKRILVLVSHSQDFLNGVCTNIIHMHNKKL 307
Cdd:cd03259 140 ALARALAREPSLLLLDEPLSALDAKLREELREELKElqreLGITTIYVTHDQEEALALADRIAVMNEGRI 209
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
417-549 |
1.88e-17 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 79.61 E-value: 1.88e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 417 YNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMI-----------RKHSHVKIGRYHQHLqeQLDLDLSPLE 485
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTIlldgqdltddeRKSLRKEIGYVFQDP--QLFPRLTVRE 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564345351 486 YM-----MKCYPEIKEKEEMRKIIGRYGLTGKQ---QVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTN 549
Cdd:pfam00005 79 NLrlgllLKGLSKREKDARAEEALEKLGLGDLAdrpVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
402-589 |
3.76e-17 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 79.36 E-value: 3.76e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 402 VQNVSFKYtKDGPCIyNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGmirkhsHVKIgryhqhlqeqLDLDL 481
Cdd:cd03230 3 VRNLSKRY-GKKTAL-DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG------EIKV----------LGKDI 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 482 spleymmkcypeIKEKEEMRKIIGrY---------GLTGKQQVspirNLSDGQKCRVCLAwlawQ----NPHMLFLDEPT 548
Cdd:cd03230 65 ------------KKEPEEVKRRIG-YlpeepslyeNLTVRENL----KLSGGMKQRLALA----QallhDPELLILDEPT 123
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 564345351 549 NHLDIETIDALADAINEF--EGG-MMLVSHDFRLIQQVAQEIWV 589
Cdd:cd03230 124 SGLDPESRREFWELLRELkkEGKtILLSSHILEEAERLCDRVAI 167
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
90-304 |
4.16e-17 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 79.54 E-value: 4.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHI-----DIYHLTREMPPSDKTPlq 164
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIlidgeDLTDLEDELPPLRRRI-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 165 cvmevdterAMLEREAErlahedaeceklmeLYERLEELDadkaemrasRILHGLgftpamqrkklkdfSGGWRMRVALA 244
Cdd:cd03229 79 ---------GMVFQDFA--------------LFPHLTVLE---------NIALGL--------------SGGQQQRVALA 112
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564345351 245 RALFIRPFMLLLDEPTNHLDLDACVWLEEELKT----FKRILVLVSHSQDFLNGVCTNIIHMHN 304
Cdd:cd03229 113 RALAMDPDVLLLDEPTSALDPITRREVRALLKSlqaqLGITVVLVTHDLDEAARLADRVVVLRD 176
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
402-589 |
5.59e-17 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 79.02 E-value: 5.59e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 402 VQNVSFKYtkDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIrkhshvkigryhqHLQEQLDLDL 481
Cdd:cd03214 2 VENLSVGY--GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI-------------LLDGKDLASL 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 482 SPLE------YMmkcyPEIKEKEEMRKIIGRygltgkqqvsPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDI-- 553
Cdd:cd03214 67 SPKElarkiaYV----PQALELLGLAHLADR----------PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIah 132
|
170 180 190
....*....|....*....|....*....|....*...
gi 564345351 554 --ETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWV 589
Cdd:cd03214 133 qiELLELLRRLARERGKTVVMVLHDLNLAARYADRVIL 170
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
94-306 |
5.96e-17 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 79.82 E-value: 5.96e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQE--LLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDIyhltREMPPSDKTPLQCVMEV-- 169
Cdd:cd03225 4 NLSFSYPDGArpALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV----DGKDLTKLSLKELRRKVgl 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 170 ---DTERAMLEREAErlahEDAE--CEKLMelyerleeLDADKAEMRASRILHGLGFTPAMQRKkLKDFSGGWRMRVALA 244
Cdd:cd03225 80 vfqNPDDQFFGPTVE----EEVAfgLENLG--------LPEEEIEERVEEALELVGLEGLRDRS-PFTLSGGQKQRVAIA 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564345351 245 RALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKR---ILVLVSHSQDFLNGVCTNIIHMHNKK 306
Cdd:cd03225 147 GVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAegkTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
94-307 |
7.53e-17 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 78.63 E-value: 7.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAvgkrevpipehidiyhLTREMPPS------DKTPLQcvm 167
Cdd:cd03214 4 NLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKT----------------LAGLLKPSsgeillDGKDLA--- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 168 evdterAMLERE-AERLAHedaeceklmeLYERLEELD-ADKAEmrasRILHGLgftpamqrkklkdfSGGWRMRVALAR 245
Cdd:cd03214 65 ------SLSPKElARKIAY----------VPQALELLGlAHLAD----RPFNEL--------------SGGERQRVLLAR 110
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564345351 246 ALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKR----ILVLVSHSQDFLNGVCTNIIHMHNKKL 307
Cdd:cd03214 111 ALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARergkTVVMVLHDLNLAARYADRVILLKDGRI 176
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
400-595 |
2.15e-16 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 77.26 E-value: 2.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRkhshvkigryhqhlqeqLD- 478
Cdd:cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR-----------------LDg 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 479 LDLSPLeymmkcypeikEKEEMRKIIGryglTGKQQV-----SPIRN-LSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLD 552
Cdd:cd03246 64 ADISQW-----------DPNELGDHVG----YLPQDDelfsgSIAENiLSGGQRQRLGLARALYGNPRILVLDEPNSHLD 128
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 564345351 553 IETIDALADAINEFEGGM---MLVSHDFRLIQQvAQEIWVCEKQTI 595
Cdd:cd03246 129 VEGERALNQAIAALKAAGatrIVIAHRPETLAS-ADRILVLEDGRV 173
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
104-385 |
2.48e-16 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 82.53 E-value: 2.48e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 104 LLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDIYHLTR---------EMPPSDKTPLQcvmevdtera 174
Cdd:PRK10636 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKlgyfaqhqlEFLRADESPLQ---------- 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 175 MLEREAERlahedaECEKLMELYerleeldadkaemrasriLHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFML 254
Cdd:PRK10636 397 HLARLAPQ------ELEQKLRDY------------------LGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLL 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 255 LLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGNYDQYVKTRLELEENQMKRFHW 334
Cdd:PRK10636 453 LLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWLSDVQKQENQTDEA 532
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 335 EQDQIAH-------MKNYIARFGHGSAKLARQAQSKEKTLQKMMA--SGLTERvVSDKTL 385
Cdd:PRK10636 533 PKENNANsaqarkdQKRREAELRTQTQPLRKEIARLEKEMEKLNAqlAQAEEK-LGDSEL 591
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
88-308 |
6.61e-16 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 78.09 E-value: 6.61e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 88 TDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDI----YHLTR----EMPPSD 159
Cdd:PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVngqtINLVRdkdgQLKVAD 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 160 KTPLQCVMevdTERAMLEREAERLAHEDAeCEKLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRM 239
Cdd:PRK10619 84 KNQLRLLR---TRLTMVFQHFNLWSHMTV-LENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQ 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564345351 240 RVALARALFIRPFMLLLDEPTNHLD-------LDACVWLEEELKTfkriLVLVSHSQDFLNGVCTNIIHMHNKKLK 308
Cdd:PRK10619 160 RVSIARALAMEPEVLLFDEPTSALDpelvgevLRIMQQLAEEGKT----MVVVTHEMGFARHVSSHVIFLHQGKIE 231
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
402-584 |
8.57e-16 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 76.53 E-value: 8.57e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 402 VQNVSFKYtKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR---KHSHVK-----IGRYHQHL 473
Cdd:cd03226 2 IENISFSY-KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILlngKPIKAKerrksIGYVMQDV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 474 QEQLDLD--LSPLEYMMKCYPEikEKEEMRKIIGRYGLTGKQQVSPiRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHL 551
Cdd:cd03226 81 DYQLFTDsvREELLLGLKELDA--GNEQAETVLKDLDLYALKERHP-LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGL 157
|
170 180 190
....*....|....*....|....*....|....*.
gi 564345351 552 DIETIDALADAINEF--EGGMMLV-SHDFRLIQQVA 584
Cdd:cd03226 158 DYKNMERVGELIRELaaQGKAVIViTHDYEFLAKVC 193
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
400-587 |
9.04e-16 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 77.03 E-value: 9.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDgpCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR-------KHSHvkigRYHQH 472
Cdd:COG1131 1 IEVRGLTKRYGDK--TALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRvlgedvaRDPA----EVRRR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 473 L----QE-QLDLDLSP---LEYMMKCY--PEIKEKEEMRKIIGRYGLTGKQQvSPIRNLSDGQKCRVCLAwLA-WQNPHM 541
Cdd:COG1131 75 IgyvpQEpALYPDLTVrenLRFFARLYglPRKEARERIDELLELFGLTDAAD-RKVGTLSGGMKQRLGLA-LAlLHDPEL 152
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 564345351 542 LFLDEPTNHLDIETIDALADAINEF-EGGM--MLVSHDFRLIQQVAQEI 587
Cdd:COG1131 153 LILDEPTSGLDPEARRELWELLRELaAEGKtvLLSTHYLEEAERLCDRV 201
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
399-587 |
1.44e-15 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 76.43 E-value: 1.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 399 VIMVQNVSFKYtkDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRkHSHVKIGRYHQHLQEQ-- 476
Cdd:COG4555 1 MIEVENLSKKY--GKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSIL-IDGEDVRKEPREARRQig 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 477 -------LDLDLSPLEYMMKCYP-------EIKEKEEmrKIIGRYGLTGKqQVSPIRNLSDGQKCRVCLAWLAWQNPHML 542
Cdd:COG4555 78 vlpdergLYDRLTVRENIRYFAElyglfdeELKKRIE--ELIELLGLEEF-LDRRVGELSTGMKKKVALARALVHDPKVL 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 564345351 543 FLDEPTNHLDIETIDALADAINEF--EGGMMLVS-HDFRLIQQVAQEI 587
Cdd:COG4555 155 LLDEPTNGLDVMARRLLREILRALkkEGKTVLFSsHIMQEVEALCDRV 202
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
94-307 |
6.67e-15 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 73.79 E-value: 6.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAV--------GKREVPIPEHIDIYHLTREMPpsdktplqc 165
Cdd:cd03268 5 DLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIIlglikpdsGEITFDGKSYQKNIEALRRIG--------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 166 vmevdterAMLEREA---ERLAHEDaeceklMELYERLeeldADKAEMRASRILHGLGFTpAMQRKKLKDFSGGWRMRVA 242
Cdd:cd03268 76 --------ALIEAPGfypNLTAREN------LRLLARL----LGIRKKRIDEVLDVVGLK-DSAKKKVKGFSLGMKQRLG 136
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564345351 243 LARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKR--ILVLV-SHSQDFLNGVCTNIIHMHNKKL 307
Cdd:cd03268 137 IALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDqgITVLIsSHLLSEIQKVADRIGIINKGKL 204
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
399-589 |
7.91e-15 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 74.69 E-value: 7.91e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 399 VIMVQNVSFKYtkDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR-------KHSHVKIGRY-- 469
Cdd:COG1120 1 MLEAENLSVGY--GGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLldgrdlaSLSRRELARRia 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 470 --HQHLqeQLDLDLSPLEY-MMKCYPEIK----EKEEMRKIIGRY----GLTGKQQvSPIRNLSDGQKCRVCLAW-LAwQ 537
Cdd:COG1120 79 yvPQEP--PAPFGLTVRELvALGRYPHLGlfgrPSAEDREAVEEAlertGLEHLAD-RPVDELSGGERQRVLIARaLA-Q 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564345351 538 NPHMLFLDEPTNHLDI----ETIDALADaINEFEG-GMMLVSHDFRLIQQVAQEIWV 589
Cdd:COG1120 155 EPPLLLLDEPTSHLDLahqlEVLELLRR-LARERGrTVVMVLHDLNLAARYADRLVL 210
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
90-309 |
2.10e-14 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 72.75 E-value: 2.10e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQ-ELLSDTKLELNSGRRYGLIGLNGIGKSMLLsavgkrevpipehidiYHLTREMPPSDKTPLqcVME 168
Cdd:COG1122 1 IELENLSFSYPGGtPALDDVSLSIEKGEFVAIIGPNGSGKSTLL----------------RLLNGLLKPTSGEVL--VDG 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 169 VDTERAMLEREAER--LAHEDAEceklMELYER--LEE---------LDADKAEMRASRILHGLGFTPAMQRK--KLkdf 233
Cdd:COG1122 63 KDITKKNLRELRRKvgLVFQNPD----DQLFAPtvEEDvafgpenlgLPREEIRERVEEALELVGLEHLADRPphEL--- 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564345351 234 SGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKR---ILVLVSHSQDFLNGVCTNIIHMHNKKLKY 309
Cdd:COG1122 136 SGGQKQRVAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKegkTVIIVTHDLDLVAELADRVIVLDDGRIVA 214
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
419-596 |
2.58e-14 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 72.75 E-value: 2.58e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 419 NLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHL---------QEQLDLDLSPLE--YM 487
Cdd:cd03267 39 GISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLrrigvvfgqKTQLWWDLPVIDsfYL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 488 MKCYPEIKEKEEMRKIIGRYGLTGKQQV--SPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDI---ETIDALADA 562
Cdd:cd03267 119 LAAIYDLPPARFKKRLDELSELLDLEELldTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVvaqENIRNFLKE 198
|
170 180 190
....*....|....*....|....*....|....*
gi 564345351 563 IN-EFEGGMMLVSHDFRLIQQVAQEIWVCEKQTIT 596
Cdd:cd03267 199 YNrERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
396-589 |
4.17e-14 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 75.40 E-value: 4.17e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 396 PPPVIMVQNVSFKYTKDGPCIyNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR-----------KHSHV 464
Cdd:TIGR02857 318 PASSLEFSGVSVAYPGRRPAL-RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAvngvpladadaDSWRD 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 465 KIGRYHQH-------LQEQLDLDLspleymmkcyPEIKEkEEMRKIIGRYGLTGKQQVSPI----------RNLSDGQKC 527
Cdd:TIGR02857 397 QIAWVPQHpflfagtIAENIRLAR----------PDASD-AEIREALERAGLDEFVAALPQgldtpigeggAGLSGGQAQ 465
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564345351 528 RVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGG--MMLVSHDfRLIQQVAQEIWV 589
Cdd:TIGR02857 466 RLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGrtVLLVTHR-LALAALADRIVV 528
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
399-589 |
5.21e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 72.85 E-value: 5.21e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 399 VIMVQNVSFKYtKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR-----------KHSHVKIG 467
Cdd:PRK13647 4 IIEVEDLHFRY-KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKvmgrevnaeneKWVRSKVG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 468 RYHQHLQEQL-------DLDLSPLEyMMKCYPEIKEK-EEMRKIIGRYGLTGKqqvsPIRNLSDGQKCRVCLAWLAWQNP 539
Cdd:PRK13647 83 LVFQDPDDQVfsstvwdDVAFGPVN-MGLDKDEVERRvEEALKAVRMWDFRDK----PPYHLSYGQKKRVAIAGVLAMDP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 564345351 540 HMLFLDEPTNHLD---IETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWV 589
Cdd:PRK13647 158 DVIVLDEPMAYLDprgQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIV 210
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
397-596 |
7.52e-14 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 74.41 E-value: 7.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 397 PPVIMVQNVSFKYTKDGPcIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR----KHSHVKIGRYHQH 472
Cdd:COG4988 334 PPSIELEDVSFSYPGGRP-ALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILingvDLSDLDPASWRRQ 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 473 --------------LQEQLDL---DLSPleymmkcypeikekEEMRKIIGRYGLTG-----KQQV-SPI----RNLSDGQ 525
Cdd:COG4988 413 iawvpqnpylfagtIRENLRLgrpDASD--------------EELEAALEAAGLDEfvaalPDGLdTPLgeggRGLSGGQ 478
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564345351 526 KCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGG--MMLVSHDFRLIQQvAQEIWVCEKQTIT 596
Cdd:COG4988 479 AQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGrtVILITHRLALLAQ-ADRILVLDDGRIV 550
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
432-595 |
2.08e-13 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 70.53 E-value: 2.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 432 LVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSpLEYMMKCYPEIKeKEEMRKIIGRYGlTG 511
Cdd:PRK09544 35 LLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLT-VNRFLRLRPGTK-KEDILPALKRVQ-AG 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 512 KQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAIN----EFEGGMMLVSHDFRLIQQVAQEI 587
Cdd:PRK09544 112 HLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDqlrrELDCAVLMVSHDLHLVMAKTDEV 191
|
....*...
gi 564345351 588 wVCEKQTI 595
Cdd:PRK09544 192 -LCLNHHI 198
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
101-288 |
2.68e-13 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 72.78 E-value: 2.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 101 GQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAvgkrevpipehidiyhLTREMPPS------DKTPLQCVMEVDTERA 174
Cdd:TIGR02868 347 APPVLDGVSLDLPPGERVAILGPSGSGKSTLLAT----------------LAGLLDPLqgevtlDGVPVSSLDQDEVRRR 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 175 MLE------------REAERLAHEDAECEKLMELYER--LEELdadkaemrASRILHGLGfTPAMQRKKLkdFSGGWRMR 240
Cdd:TIGR02868 411 VSVcaqdahlfdttvRENLRLARPDATDEELWAALERvgLADW--------LRALPDGLD-TVLGEGGAR--LSGGERQR 479
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564345351 241 VALARALFIRPFMLLLDEPTNHLDLDACVWLEEEL--KTFKRILVLVSHS 288
Cdd:TIGR02868 480 LALARALLADAPILLLDEPTEHLDAETADELLEDLlaALSGRTVVLITHH 529
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
92-304 |
2.71e-13 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 69.83 E-value: 2.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 92 IINLSLTF----HGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSA-VGkrEVPiPEHIDIYHLTREMPPSDKTPLQCV 166
Cdd:COG1124 4 VRNLSVSYgqggRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRAlAG--LER-PWSGEVTFDGRPVTRRRRKAFRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 167 MEV---DTERAMLEREaeRLAHEDAECEKLMELYERLEeldadkaemRASRILHGLGFTPAMQRKKLKDFSGGWRMRVAL 243
Cdd:COG1124 81 VQMvfqDPYASLHPRH--TVDRILAEPLRIHGLPDREE---------RIAELLEQVGLPPSFLDRYPHQLSGGQRQRVAI 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564345351 244 ARALFIRPFMLLLDEPTNHLD-------LDAcvwLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHN 304
Cdd:COG1124 150 ARALILEPELLLLDEPTSALDvsvqaeiLNL---LKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQN 214
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
94-265 |
2.95e-13 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 70.07 E-value: 2.95e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAvgkrevpipehidiyhLTREMPPS------DKTPLqcvm 167
Cdd:COG1120 6 NLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRA----------------LAGLLKPSsgevllDGRDL---- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 168 evdteRAMLERE-AERLA-----HEDAE---CEKLMEL--------YERLEELDADKAE--MRASRILHglgftpaMQRK 228
Cdd:COG1120 66 -----ASLSRRElARRIAyvpqePPAPFgltVRELVALgryphlglFGRPSAEDREAVEeaLERTGLEH-------LADR 133
|
170 180 190
....*....|....*....|....*....|....*..
gi 564345351 229 KLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDL 265
Cdd:COG1120 134 PVDELSGGERQRVLIARALAQEPPLLLLDEPTSHLDL 170
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
91-308 |
3.42e-13 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 68.82 E-value: 3.42e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 91 HIINLSLTF-HGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKrevpipehidiyhLTREM---------PPSDK 160
Cdd:cd03226 1 RIENISFSYkKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG-------------LIKESsgsillngkPIKAK 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 161 TPLQC---VMEvDTERAMLEREAERlahedaeceklmELYERLEELDADKAemRASRILHGLGFTPAMQRKKLkDFSGGW 237
Cdd:cd03226 68 ERRKSigyVMQ-DVDYQLFTDSVRE------------ELLLGLKELDAGNE--QAETVLKDLDLYALKERHPL-SLSGGQ 131
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564345351 238 RMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEE---ELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLK 308
Cdd:cd03226 132 KQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGElirELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
402-589 |
3.50e-13 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 72.56 E-value: 3.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 402 VQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRkhshvkIGRY------HQHLQE 475
Cdd:COG2274 476 LENVSFRYPGDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRIL------IDGIdlrqidPASLRR 549
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 476 QL-----DLDL---SPLEYMMKCYPEIkEKEEMRKIIGRYGLTG---------KQQVSPI-RNLSDGQKCRVCLA--WLa 535
Cdd:COG2274 550 QIgvvlqDVFLfsgTIRENITLGDPDA-TDEEIIEAARLAGLHDfiealpmgyDTVVGEGgSNLSGGQRQRLAIAraLL- 627
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 564345351 536 wQNPHMLFLDEPTNHLDIETIDALADAINEFEGG--MMLVSHDFRLIQQvAQEIWV 589
Cdd:COG2274 628 -RNPRILILDEATSALDAETEAIILENLRRLLKGrtVIIIAHRLSTIRL-ADRIIV 681
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
90-303 |
4.33e-13 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 68.71 E-value: 4.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVP-----IPEHIDIYHltremppsdktPLQ 164
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPdsgtiIIDGLKLTD-----------DKK 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 165 CVMEVDTERAMLEREAERLAHEDAeCEKLMELYERLEELDADKAEMRASRILHGLGFtPAMQRKKLKDFSGGWRMRVALA 244
Cdd:cd03262 70 NINELRQKVGMVFQQFNLFPHLTV-LENITLAPIKVKGMSKAEAEERALELLEKVGL-ADKADAYPAQLSGGQQQRVAIA 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564345351 245 RALFIRPFMLLLDEPTNHLD-------LDACVWLEEELKTfkriLVLVSHSQDFLNGVCTNIIHMH 303
Cdd:cd03262 148 RALAMNPKVMLFDEPTSALDpelvgevLDVMKDLAEEGMT----MVVVTHEMGFAREVADRVIFMD 209
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
94-302 |
4.91e-13 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 69.39 E-value: 4.91e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDIYHLTREMPPSDKTPLQCVMEVDTER 173
Cdd:PRK11264 8 NLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 174 AMLEREAERLAHEDAeCEKLMELYERLEELDADKAEMRASRILHGLGFTpAMQRKKLKDFSGGWRMRVALARALFIRPFM 253
Cdd:PRK11264 88 GFVFQNFNLFPHRTV-LENIIEGPVIVKGEPKEEATARARELLAKVGLA-GKETSYPRRLSGGQQQRVAIARALAMRPEV 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 564345351 254 LLLDEPTNHLD-------LDACVWLEEElktfKRILVLVSHSQDFLNGVCTNIIHM 302
Cdd:PRK11264 166 ILFDEPTSALDpelvgevLNTIRQLAQE----KRTMVIVTHEMSFARDVADRAIFM 217
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
94-310 |
5.68e-13 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 68.33 E-value: 5.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAV--------------GKREVPIPEHI----DIYHLTREM 155
Cdd:cd03235 4 DLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAIlgllkptsgsirvfGKPLEKERKRIgyvpQRRSIDRDF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 156 PPSdktplqcVMEVdterAMLEREAE-----RLAHEDaeCEKLMELYERLeeldadkaemrasrilhGLGftpAMQRKKL 230
Cdd:cd03235 84 PIS-------VRDV----VLMGLYGHkglfrRLSKAD--KAKVDEALERV-----------------GLS---ELADRQI 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 231 KDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDAC---VWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMhNKKL 307
Cdd:cd03235 131 GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQediYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL-NRTV 209
|
...
gi 564345351 308 KYY 310
Cdd:cd03235 210 VAS 212
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
99-304 |
7.29e-13 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 68.50 E-value: 7.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 99 FHG-QELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDI--YHLTREMPPSDKTPLQCVMEVdterAM 175
Cdd:PRK11124 11 FYGaHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIagNHFDFSKTPSDKAIRELRRNV----GM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 176 LEREAERLAHEDAeCEKLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKdFSGGWRMRVALARALFIRPFMLL 255
Cdd:PRK11124 87 VFQQYNLWPHLTV-QQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLH-LSGGQQQRVAIARALMMEPQVLL 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 564345351 256 LDEPTNHLDLD---ACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHN 304
Cdd:PRK11124 165 FDEPTAALDPEitaQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMEN 216
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
115-309 |
7.35e-13 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 68.16 E-value: 7.35e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 115 GRRYGLIGLNGIGKS----MLLSAV----GKREVpipEHIDIYHLTREMPP-----SDKTPLQCVMevdTERAMLEreae 181
Cdd:cd03266 31 GEVTGLLGPNGAGKTttlrMLAGLLepdaGFATV---DGFDVVKEPAEARRrlgfvSDSTGLYDRL---TARENLE---- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 182 rlahedaeceklmeLYERLEELDADKAEMRASRILHGLGFTPAMQRKkLKDFSGGWRMRVALARALFIRPFMLLLDEPTN 261
Cdd:cd03266 101 --------------YFAGLYGLKGDELTARLEELADRLGMEELLDRR-VGGFSTGMRQKVAIARALVHDPPVLLLDEPTT 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564345351 262 HLDLDACVWLEEELKTFKRI---LVLVSHSQDFLNGVCTNIIHMHNKKLKY 309
Cdd:cd03266 166 GLDVMATRALREFIRQLRALgkcILFSTHIMQEVERLCDRVVVLHRGRVVY 216
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
90-309 |
7.40e-13 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 67.99 E-value: 7.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRrYGLIGLNGIGKSMLLSAvgkrevpipehidiyhLTREMPPSDKTplqcvMEV 169
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRI----------------LATLTPPSSGT-----IRI 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 170 DTERAMLEREAERlAH-----EDAECEKLMELYE------RLEELDADKAEMRASRILHGLGFTPAmQRKKLKDFSGGWR 238
Cdd:cd03264 59 DGQDVLKQPQKLR-RRigylpQEFGVYPNFTVREfldyiaWLKGIPSKEVKARVDEVLELVNLGDR-AKKKIGSLSGGMR 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 239 MRVALARALFIRPFMLLLDEPTNHLDldacvwlEEELKTFKRIL--------VLVS-HSQDFLNGVCTNIIHMHNKKLKY 309
Cdd:cd03264 137 RRVGIAQALVGDPSILIVDEPTAGLD-------PEERIRFRNLLselgedriVILStHIVEDVESLCNQVAVLNKGKLVF 209
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
397-575 |
8.24e-13 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 68.57 E-value: 8.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 397 PPVIMVQNVSFKYtkDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGM----------------IRK 460
Cdd:COG1119 1 DPLLELRNVTVRR--GGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGNdvrlfgerrggedvweLRK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 461 HshvkIGRYHQHLQEQLDLDLSPLE------Y-MMKCYPEIKEKEEMR--KIIGRYGLTGKQQvSPIRNLSDGQKCRVCL 531
Cdd:COG1119 79 R----IGLVSPALQLRFPRDETVLDvvlsgfFdSIGLYREPTDEQRERarELLELLGLAHLAD-RPFGTLSQGEQRRVLI 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564345351 532 --AWLAwqNPHMLFLDEPTNHLD-------IETIDALADainefEGG--MMLVSH 575
Cdd:COG1119 154 arALVK--DPELLILDEPTAGLDlgarellLALLDKLAA-----EGAptLVLVTH 201
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
91-302 |
8.81e-13 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 68.23 E-value: 8.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 91 HIINLSLTF-----HGQEL--LSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDIYHLTREmppsdktpl 163
Cdd:COG4778 6 EVENLSKTFtlhlqGGKRLpvLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHDGGW--------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 164 qcvmeVD----TERAMLE-REAE------------RLAHEDAECEKLMELyerleELDADKAEMRASRILHGLGFtpamq 226
Cdd:COG4778 77 -----VDlaqaSPREILAlRRRTigyvsqflrvipRVSALDVVAEPLLER-----GVDREEARARARELLARLNL----- 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 227 RKKLKD-----FSGGWRMRVALARALFIRPFMLLLDEPTNHLDL---DACVWLEEELKTFKRILVLVSHSQDFLNGVCTN 298
Cdd:COG4778 142 PERLWDlppatFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAanrAVVVELIEEAKARGTAIIGIFHDEEVREAVADR 221
|
....
gi 564345351 299 IIHM 302
Cdd:COG4778 222 VVDV 225
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
432-591 |
1.30e-12 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 70.53 E-value: 1.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 432 LVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGrYHQhlQE-QLDLDLSPLEYMMKCYPEIKEK------------- 497
Cdd:PRK11819 38 VLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVG-YLP--QEpQLDPEKTVRENVEEGVAEVKAAldrfneiyaayae 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 498 --EEMRKIIGRYG-LTGK----------QQV-------------SPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHL 551
Cdd:PRK11819 115 pdADFDALAAEQGeLQEIidaadawdldSQLeiamdalrcppwdAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHL 194
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 564345351 552 DIETIDALADAINEFEGGMMLVSHDFRLIQQVAQeiWVCE 591
Cdd:PRK11819 195 DAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAG--WILE 232
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
102-307 |
1.51e-12 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 68.29 E-value: 1.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 102 QELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHI-----DIYHLTREMPPSDKTPLQCVMEvDTERAML 176
Cdd:TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVsfrgqDLYQLDRKQRRAFRRDVQLVFQ-DSPSAVN 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 177 EREAERlahedaecEKLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLL 256
Cdd:TIGR02769 103 PRMTVR--------QIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVL 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564345351 257 DEPTNHLDL----DACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKL 307
Cdd:TIGR02769 175 DEAVSNLDMvlqaVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
220-331 |
2.56e-12 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 69.76 E-value: 2.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 220 GFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNI 299
Cdd:PRK11819 433 NFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHI 512
|
90 100 110
....*....|....*....|....*....|...
gi 564345351 300 IHMH-NKKLKYYTGNYDQYvktrlelEENQMKR 331
Cdd:PRK11819 513 LAFEgDSQVEWFEGNFQEY-------EEDKKRR 538
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
423-576 |
2.72e-12 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 65.72 E-value: 2.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 423 GIDLDTR----VALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYM-MKCYPEI--- 494
Cdd:NF040873 10 GVDLTIPagslTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGGARVAYVPQRSEVPDSLPLTVRDLVaMGRWARRglw 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 495 -KEKEEMRKIIG----RYGLTGkQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEG- 568
Cdd:NF040873 90 rRLTRDDRAAVDdaleRVGLAD-LAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGLDAESRERIIALLAEEHAr 168
|
170
....*....|
gi 564345351 569 --GMMLVSHD 576
Cdd:NF040873 169 gaTVVVVTHD 178
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
233-287 |
3.43e-12 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 64.93 E-value: 3.43e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 564345351 233 FSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEE---ELKTFKRILVLVSH 287
Cdd:cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQaiaALKAAGATRIVIAH 154
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
94-307 |
3.97e-12 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 66.07 E-value: 3.97e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQEL--LSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHI-----DIyhltREMPPSD-KTPLQC 165
Cdd:cd03245 7 NVSFSYPNQEIpaLDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVlldgtDI----RQLDPADlRRNIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 166 VMEVDTERAMLEREAERLAHEDAECEKLMELYER--LEELDADkaemrasrilHGLGFtpAMQ-RKKLKDFSGGWRMRVA 242
Cdd:cd03245 83 VPQDVTLFYGTLRDNITLGAPLADDERILRAAELagVTDFVNK----------HPNGL--DLQiGERGRGLSGGQRQAVA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564345351 243 LARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFK--RILVLVSHSQDFLNgVCTNIIHMHNKKL 307
Cdd:cd03245 151 LARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLgdKTLIIITHRPSLLD-LVDRIIVMDSGRI 216
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
399-592 |
4.02e-12 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 66.23 E-value: 4.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 399 VIMVQNVSFKYtKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR---------KHSHV----- 464
Cdd:COG2884 1 MIRFENVSKRY-PGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLvngqdlsrlKRREIpylrr 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 465 KIGRYHQ--HLqeqLDlDLS-------PLEYMMKCYPEIKEKeeMRKIIGRYGLTGKQQVSPIrNLSDGQKCRVCLAwla 535
Cdd:COG2884 80 RIGVVFQdfRL---LP-DRTvyenvalPLRVTGKSRKEIRRR--VREVLDLVGLSDKAKALPH-ELSGGEQQRVAIAral 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 536 wqNPHMLFLDEPTNHLDIETIDALADAINEF--EGGMMLV-SHDFRLIQQVAQEIWVCEK 592
Cdd:COG2884 153 vnRPELLLADEPTGNLDPETSWEIMELLEEInrRGTTVLIaTHDLELVDRMPKRVLELED 212
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
370-592 |
5.24e-12 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 68.98 E-value: 5.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 370 MMASGLTERVVS--DKTLSFyfPPCGKIPPP----VIMVQNVSFKY-TKDGPCIYNNLEFGIDLDTRVALVGPNGAGKST 442
Cdd:TIGR00958 445 MQAVGASEKVFEylDRKPNI--PLTGTLAPLnlegLIEFQDVSFSYpNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKST 522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 443 LLKLLTGELLPTDGM-------IRKHSHVkigRYHQHL----QEQL------------DLDLSPLEYMMK------CYPE 493
Cdd:TIGR00958 523 VAALLQNLYQPTGGQvlldgvpLVQYDHH---YLHRQValvgQEPVlfsgsvreniayGLTDTPDEEIMAaakaanAHDF 599
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 494 IKEKEEmrKIIGRYGLTGKQqvspirnLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLV 573
Cdd:TIGR00958 600 IMEFPN--GYDTEVGEKGSQ-------LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLI 670
|
250
....*....|....*....
gi 564345351 574 SHDFRLIQQvAQEIWVCEK 592
Cdd:TIGR00958 671 AHRLSTVER-ADQILVLKK 688
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
400-595 |
5.89e-12 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 65.71 E-value: 5.89e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSH----VKIGRYHQHL-- 473
Cdd:cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHdvrdYTLASLRRQIgl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 474 --QEQLDLDLSPLEYMMKCYPEIKEKEEMR-------------------KIIGRYGLtgkqqvspirNLSDGQKCRVCLA 532
Cdd:cd03251 81 vsQDVFLFNDTVAENIAYGRPGATREEVEEaaraanahefimelpegydTVIGERGV----------KLSGGQRQRIAIA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564345351 533 WLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGG--MMLVSHDFRLIQQvAQEIWVCEKQTI 595
Cdd:cd03251 151 RALLKDPPILILDEATSALDTESERLVQAALERLMKNrtTFVIAHRLSTIEN-ADRIVVLEDGKI 214
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
400-583 |
6.19e-12 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 65.30 E-value: 6.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMI---------------RKHshv 464
Cdd:cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVlldgtdirqldpadlRRN--- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 465 kIGRYHQH-------LQEQLDLDlspleymmkcYPEIKEKEEMR--KIIGRYGLTGKQ------QVSPI-RNLSDGQKCR 528
Cdd:cd03245 80 -IGYVPQDvtlfygtLRDNITLG----------APLADDERILRaaELAGVTDFVNKHpngldlQIGERgRGLSGGQRQA 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564345351 529 VCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGG--MMLVSHDFRLIQQV 583
Cdd:cd03245 149 VALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDktLIIITHRPSLLDLV 205
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
398-589 |
6.85e-12 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 68.01 E-value: 6.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 398 PVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTgellptdGMIRKHSHVKiGRYHQHLQEQL 477
Cdd:COG1123 3 PLLEVRDLSVRYPGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALM-------GLLPHGGRIS-GEVLLDGRDLL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 478 DLDLS---------PLEYM-----MKCYPEIKE--------KEEMRKII----GRYGLTGKQQVSPIRnLSDGQKCRVCL 531
Cdd:COG1123 75 ELSEAlrgrrigmvFQDPMtqlnpVTVGDQIAEalenlglsRAEARARVlellEAVGLERRLDRYPHQ-LSGGQRQRVAI 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564345351 532 AWLAWQNPHMLFLDEPTNHLD----IETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWV 589
Cdd:COG1123 154 AMALALDPDLLIADEPTTALDvttqAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVV 215
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
389-596 |
8.43e-12 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 67.87 E-value: 8.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 389 FPPCGKIPP--PVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR------- 459
Cdd:COG4987 321 EPAEPAPAPggPSLELEDVSFRYPGAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITlggvdlr 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 460 ---------------KHSHV---------KIGRyhqhlqeqldldlspleymmkcyPEIKEkEEMRKIIGRYGL------ 509
Cdd:COG4987 401 dldeddlrrriavvpQRPHLfdttlrenlRLAR-----------------------PDATD-EELWAALERVGLgdwlaa 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 510 -----------TGkqqvspiRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGG--MMLVSHD 576
Cdd:COG4987 457 lpdgldtwlgeGG-------RRLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGrtVLLITHR 529
|
250 260
....*....|....*....|
gi 564345351 577 FRLIQQvAQEIWVCEKQTIT 596
Cdd:COG4987 530 LAGLER-MDRILVLEDGRIV 548
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
394-552 |
8.72e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 65.78 E-value: 8.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 394 KIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR-----------KHS 462
Cdd:PRK13632 2 KNKSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKidgitiskenlKEI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 463 HVKIGRYHQHLQEQL-------DLDLSpLEYmmKCYPeikeKEEMRKIIGRY----GLTGKQQVSPiRNLSDGQKCRVCL 531
Cdd:PRK13632 82 RKKIGIIFQNPDNQFigatvedDIAFG-LEN--KKVP----PKKMKDIIDDLakkvGMEDYLDKEP-QNLSGGQKQRVAI 153
|
170 180
....*....|....*....|.
gi 564345351 532 AWLAWQNPHMLFLDEPTNHLD 552
Cdd:PRK13632 154 ASVLALNPEIIIFDESTSMLD 174
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
92-307 |
1.38e-11 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 64.45 E-value: 1.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 92 IINLSLTFHGQ----ELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAV--------GKREVpipEHIDIYHLTREMPPSD 159
Cdd:cd03257 4 VKNLSVSFPTGggsvKALDDVSFSIKKGETLGLVGESGSGKSTLARAIlgllkptsGSIIF---DGKDLLKLSRRLRKIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 160 KTPLQCV-----------MEVdteramleREAerlahedaecekLMELYERLEELDADKA-EMRASRILHGLGFTPAMQR 227
Cdd:cd03257 81 RKEIQMVfqdpmsslnprMTI--------GEQ------------IAEPLRIHGKLSKKEArKEAVLLLLVGVGLPEEVLN 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 228 KKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLD--ACVwleeeLKTFKRI-------LVLVSHSQDFLNGVCTN 298
Cdd:cd03257 141 RYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSvqAQI-----LDLLKKLqeelgltLLFITHDLGVVAKIADR 215
|
....*....
gi 564345351 299 IIHMHNKKL 307
Cdd:cd03257 216 VAVMYAGKI 224
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
398-565 |
1.57e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 65.16 E-value: 1.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 398 PVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMI---------------RKHs 462
Cdd:PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIfynnqaitddnfeklRKH- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 463 hvkIGRYHQHLQEQ-----LDLDLS-PLEYMMKCYPEIKEKeeMRKIIGRYGLTGKQQVSPiRNLSDGQKCRVCLAWLAW 536
Cdd:PRK13648 85 ---IGIVFQNPDNQfvgsiVKYDVAfGLENHAVPYDEMHRR--VSEALKQVDMLERADYEP-NALSGGQKQRVAIAGVLA 158
|
170 180
....*....|....*....|....*....
gi 564345351 537 QNPHMLFLDEPTNHLDIETIDALADAINE 565
Cdd:PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRK 187
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
90-307 |
1.85e-11 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 64.65 E-value: 1.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDI--YHLTREMPPSDKTPLQCVM 167
Cdd:COG4161 3 IQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIagHQFDFSQKPSEKAIRLLRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 168 EVdterAMLEREAERLAHEDAEcEKLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKdFSGGWRMRVALARAL 247
Cdd:COG4161 83 KV----GMVFQQYNLWPHLTVM-ENLIEAPCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLH-LSGGQQQRVAIARAL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564345351 248 FIRPFMLLLDEPTNHLD---LDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKL 307
Cdd:COG4161 157 MMEPQVLLFDEPTAALDpeiTAQVVEIIRELSQTGITQVIVTHEVEFARKVASQVVYMEKGRI 219
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
71-288 |
2.44e-11 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 66.54 E-value: 2.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 71 KAAARAVTGVLAS----HPNSTDV--------HIINLSLTFHGQ-ELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAvgk 137
Cdd:TIGR02857 291 VAAAEALFAVLDAaprpLAGKAPVtaapasslEFSGVSVAYPGRrPALRPVSFTVPPGERVALVGPSGAGKSTLLNL--- 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 138 revpipehidiyhLTREMPPSDKTPLqcVMEVDTERAMLEREAERLAH--------EDAECEKLmelyeRLEELDADKAE 209
Cdd:TIGR02857 368 -------------LLGFVDPTEGSIA--VNGVPLADADADSWRDQIAWvpqhpflfAGTIAENI-----RLARPDASDAE 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 210 MRASRILHGL-GFT---PAMQRKKLKD----FSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFK-- 279
Cdd:TIGR02857 428 IREALERAGLdEFVaalPQGLDTPIGEggagLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAqg 507
|
....*....
gi 564345351 280 RILVLVSHS 288
Cdd:TIGR02857 508 RTVLLVTHR 516
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
92-264 |
2.45e-11 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 65.63 E-value: 2.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 92 IINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHI-----DIYHltreMPPSDKtPLQcv 166
Cdd:PRK11607 22 IRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQImldgvDLSH----VPPYQR-PIN-- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 167 mevdteraMLEREAERLAHEDAECEKLMEL-YERL--EELDADKAEMRAsrILHGLGFTpamqRKKLKDFSGGWRMRVAL 243
Cdd:PRK11607 95 --------MMFQSYALFPHMTVEQNIAFGLkQDKLpkAEIASRVNEMLG--LVHMQEFA----KRKPHQLSGGQRQRVAL 160
|
170 180
....*....|....*....|.
gi 564345351 244 ARALFIRPFMLLLDEPTNHLD 264
Cdd:PRK11607 161 ARSLAKRPKLLLLDEPMGALD 181
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
411-587 |
2.52e-11 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 63.28 E-value: 2.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 411 KDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR---KHSHVKIGRYHQHL-----QEQLDLDLS 482
Cdd:cd03231 10 RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLlngGPLDFQRDSIARGLlylghAPGIKTTLS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 483 PLEYmMKCYPEIKEKEEMRKIIGRYGLTGKQQVsPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADA 562
Cdd:cd03231 90 VLEN-LRFWHADHSDEQVEEALARVGLNGFEDR-PVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEA 167
|
170 180
....*....|....*....|....*....
gi 564345351 563 INEF--EGGMMLVS--HDFRLIQQVAQEI 587
Cdd:cd03231 168 MAGHcaRGGMVVLTthQDLGLSEAGAREL 196
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
399-596 |
2.59e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 64.82 E-value: 2.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 399 VIMVQNVSFKYTKDGPCIyNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDG--MIRKHSHVK---------IG 467
Cdd:PRK13652 3 LIETRDLCYSYSGSKEAL-NNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGsvLIRGEPITKenirevrkfVG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 468 RYHQHLQEQL-------DLDLSPLEYMMKcypEIKEKEEMRKIIGRYGLTGKQQVSPiRNLSDGQKCRVCLAWLAWQNPH 540
Cdd:PRK13652 82 LVFQNPDDQIfsptveqDIAFGPINLGLD---EETVAHRVSSALHMLGLEELRDRVP-HHLSGGEKKRVAIAGVIAMEPQ 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 541 MLFLDEPTNHLDIETIDALADAINEF--EGGMMLV--SHDFRLIQQVAQEIWVCEKQTIT 596
Cdd:PRK13652 158 VLVLDEPTAGLDPQGVKELIDFLNDLpeTYGMTVIfsTHQLDLVPEMADYIYVMDKGRIV 217
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
64-287 |
3.00e-11 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 66.37 E-value: 3.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 64 LEDFE--MKKAAARAVTGVLASHPNSTDVHIINLSLTF-HGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAV----- 135
Cdd:COG4178 335 LAGFEeaLEAADALPEAASRIETSEDGALALEDLTLRTpDGRPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIaglwp 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 136 -GKREVPIPEHIDIYHLTRE--MPPsdktplqcvmevDTERAMLEREAERLAHEDAECEKLME------LYERLEEldad 206
Cdd:COG4178 415 yGSGRIARPAGARVLFLPQRpyLPL------------GTLREALLYPATAEAFSDAELREALEavglghLAERLDE---- 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 207 kaEMRASRILhglgftpamqrkklkdfSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDAcvwlEEEL-KTFKR----- 280
Cdd:COG4178 479 --EADWDQVL-----------------SLGEQQRLAFARLLLHKPDWLFLDEATSALDEEN----EAALyQLLREelpgt 535
|
....*..
gi 564345351 281 ILVLVSH 287
Cdd:COG4178 536 TVISVGH 542
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
71-307 |
3.68e-11 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 65.93 E-value: 3.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 71 KAAARAVTGVLASH-----------PNSTDVHII--NLSLTFH-GQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAvg 136
Cdd:COG4988 305 IAAAEKIFALLDAPepaapagtaplPAAGPPSIEleDVSFSYPgGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNL-- 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 137 krevpipehidiyhLTREMPPS------DKTPLQcvmEVDTE--RAMLE-------------REAERLAHEDAeceklme 195
Cdd:COG4988 383 --------------LLGFLPPYsgsiliNGVDLS---DLDPAswRRQIAwvpqnpylfagtiRENLRLGRPDA------- 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 196 lyerleeldaDKAEMRAsrilhglgftpAMQRKKLKDF-------------------SGGWRMRVALARALFIRPFMLLL 256
Cdd:COG4988 439 ----------SDEELEA-----------ALEAAGLDEFvaalpdgldtplgeggrglSGGQAQRLALARALLRDAPLLLL 497
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 564345351 257 DEPTNHLDLDAcvwlEEELKT-----FK-RILVLVSHSQDFLNgVCTNIIHMHNKKL 307
Cdd:COG4988 498 DEPTAHLDAET----EAEILQalrrlAKgRTVILITHRLALLA-QADRILVLDDGRI 549
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
423-595 |
3.69e-11 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 62.93 E-value: 3.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 423 GIDLDTR----VALVGPNGAGKSTLLKLLTGELLPTDGMIR------KHSHVKIGRYHQHLQ---EQLDL--DLSPLEYM 487
Cdd:cd03262 18 GIDLTVKkgevVVIIGPSGSGKSTLLRCINLLEEPDSGTIIidglklTDDKKNINELRQKVGmvfQQFNLfpHLTVLENI 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 488 M------KCYPEIKEKEEMRKIIGRYGLTGKQQVSPiRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALAD 561
Cdd:cd03262 98 TlapikvKGMSKAEAEERALELLEKVGLADKADAYP-AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLD 176
|
170 180 190
....*....|....*....|....*....|....*..
gi 564345351 562 AINEF--EG-GMMLVSHDFRLIQQVAQEIWVCEKQTI 595
Cdd:cd03262 177 VMKDLaeEGmTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
201-314 |
3.83e-11 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 66.13 E-value: 3.83e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 201 EELDADK------AE-----MRASRILHGLG------FTPAMQRKKLKDFSGGWRMRVALARaLFIRPFMLL-LDEPTNH 262
Cdd:PRK11147 392 AELDPEKtvmdnlAEgkqevMVNGRPRHVLGylqdflFHPKRAMTPVKALSGGERNRLLLAR-LFLKPSNLLiLDEPTND 470
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 564345351 263 LDLDACVWLEEELKTFKRILVLVSHSQDFL-NGVCTNIIHMHNKKLKYYTGNY 314
Cdd:PRK11147 471 LDVETLELLEELLDSYQGTVLLVSHDRQFVdNTVTECWIFEGNGKIGRYVGGY 523
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
400-580 |
4.11e-11 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 62.81 E-value: 4.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPCIyNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKH----SHVK---IGRYHQH 472
Cdd:cd03292 1 IEFINVTKTYPNGTAAL-DGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNgqdvSDLRgraIPYLRRK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 473 L----QE-QLDLDLS-------PLEYMMKCYPEIKEKEEMrkIIGRYGLTGKQQVSPiRNLSDGQKCRVCLAWLAWQNPH 540
Cdd:cd03292 80 IgvvfQDfRLLPDRNvyenvafALEVTGVPPREIRKRVPA--ALELVGLSHKHRALP-AELSGGEQQRVAIARAIVNSPT 156
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 564345351 541 MLFLDEPTNHLDIETIDALADAINEFE--GGMMLVS-HDFRLI 580
Cdd:cd03292 157 ILIADEPTGNLDPDTTWEIMNLLKKINkaGTTVVVAtHAKELV 199
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
423-623 |
4.43e-11 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 64.33 E-value: 4.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 423 GIDLDTR----VALVGPNGAGKSTLLKLLTGELLPTDG--------MIRKHSHVK--IGRYHQhlQEQLDLDLSPLEYMM 488
Cdd:TIGR01188 11 GVNFKVRegevFGFLGPNGAGKTTTIRMLTTLLRPTSGtarvagydVVREPRKVRrsIGIVPQ--YASVDEDLTGRENLE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 489 KC-----YPEIKEKEEMRKIIGRYGLTGKQQvSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAI 563
Cdd:TIGR01188 89 MMgrlygLPKDEAEERAEELLELFELGEAAD-RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYI 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564345351 564 NEF-EGGM--MLVSHDFRLIQQVAQEIWVCEKqtitkwpGDILAYK--EHLKSKLVDEEPQLTKR 623
Cdd:TIGR01188 168 RALkEEGVtiLLTTHYMEEADKLCDRIAIIDH-------GRIIAEGtpEELKRRLGKDTLESRPR 225
|
|
| F420-0_ABC_ATP |
TIGR03873 |
proposed F420-0 ABC transporter, ATP-binding protein; This small clade of ABC-type transporter ... |
101-267 |
4.96e-11 |
|
proposed F420-0 ABC transporter, ATP-binding protein; This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Pssm-ID: 163585 [Multi-domain] Cd Length: 256 Bit Score: 63.29 E-value: 4.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 101 GQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDIYHL-TREMPPSDKTPLQCVME--VDTERAMLE 177
Cdd:TIGR03873 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVdLHGLSRRARARRVALVEqdSDTAVPLTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 178 REAERLAHEDaeceklmelYERLEELDADKAEMRASRILHGLGFTpAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLD 257
Cdd:TIGR03873 93 RDVVALGRIP---------HRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQEPKLLLLD 162
|
170
....*....|
gi 564345351 258 EPTNHLDLDA 267
Cdd:TIGR03873 163 EPTNHLDVRA 172
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
423-584 |
4.99e-11 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 63.23 E-value: 4.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 423 GIDLDTR----VALVGPNGAGKSTLLKLLTGELLPTDGMIR------------KHSHVKIGRYHQHL----QeqlDLDLS 482
Cdd:PRK11264 21 GIDLEVKpgevVAIIGPSGSGKTTLLRCINLLEQPEAGTIRvgditidtarslSQQKGLIRQLRQHVgfvfQ---NFNLF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 483 P----LEYMMKCyPEIKEKEEM-------RKIIGRYGLTGKQQVSPiRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHL 551
Cdd:PRK11264 98 PhrtvLENIIEG-PVIVKGEPKeeataraRELLAKVGLAGKETSYP-RRLSGGQQQRVAIARALAMRPEVILFDEPTSAL 175
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 564345351 552 DIE-------TIDALAdainEFEGGMMLVSHDFRLIQQVA 584
Cdd:PRK11264 176 DPElvgevlnTIRQLA----QEKRTMVIVTHEMSFARDVA 211
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
418-589 |
5.20e-11 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 62.84 E-value: 5.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 418 NNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR------------KHSHVKIGRYHQHLqeQLDLDLSPLE 485
Cdd:cd03219 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLfdgeditglpphEIARLGIGRTFQIP--RLFPELTVLE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 486 YMM---------------KCYPEIKEKEEMRKIIGRYGLTGKQQVsPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPT-- 548
Cdd:cd03219 95 NVMvaaqartgsglllarARREEREARERAEELLERVGLADLADR-PAGELSYGQQRRLEIARALATDPKLLLLDEPAag 173
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 564345351 549 -NHLDIETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWV 589
Cdd:cd03219 174 lNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTV 215
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
71-287 |
6.22e-11 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 65.17 E-value: 6.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 71 KAAARAVTGVL------------ASHPNSTDVHIINLSLTFHGQE--LLSDTKLELNSGRRYGLIGLNGIGKSMLLSAvg 136
Cdd:COG4987 303 RAAARRLNELLdappavtepaepAPAPGGPSLELEDVSFRYPGAGrpVLDGLSLTLPPGERVAIVGPSGSGKSTLLAL-- 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 137 krevpipehidiyhLTREMPPS------DKTPLQCVMEVDTER--AMLEREAE----------RLAHEDAECEKLME--- 195
Cdd:COG4987 381 --------------LLRFLDPQsgsitlGGVDLRDLDEDDLRRriAVVPQRPHlfdttlrenlRLARPDATDEELWAale 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 196 ------LYERLEE-LDAdkaemrasrILHGLGFTpamqrkklkdFSGGWRMRVALARALFIRPFMLLLDEPTNHLD-LDA 267
Cdd:COG4987 447 rvglgdWLAALPDgLDT---------WLGEGGRR----------LSGGERRRLALARALLRDAPILLLDEPTEGLDaATE 507
|
250 260
....*....|....*....|.
gi 564345351 268 CVWLEEELKTFK-RILVLVSH 287
Cdd:COG4987 508 QALLADLLEALAgRTVLLITH 528
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
90-290 |
7.09e-11 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 64.01 E-value: 7.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSA-------------VGKREVPIpeHIDI-------- 148
Cdd:COG1118 3 IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIiagletpdsgrivLNGRDLFT--NLPPrerrvgfv 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 149 ---Y----HLT---------REMPPSdktplqcvmevdteramlEREAERLAHEdaecekLMELYErLEELdadkaemrA 212
Cdd:COG1118 81 fqhYalfpHMTvaeniafglRVRPPS------------------KAEIRARVEE------LLELVQ-LEGL--------A 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 213 SRILHGLgftpamqrkklkdfSGGWRMRVALARALFIRPFMLLLDEPTNHldLDACV------WLEEELKTFKRILVLVS 286
Cdd:COG1118 128 DRYPSQL--------------SGGQRQRVALARALAVEPEVLLLDEPFGA--LDAKVrkelrrWLRRLHDELGGTTVFVT 191
|
....
gi 564345351 287 HSQD 290
Cdd:COG1118 192 HDQE 195
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
424-592 |
9.19e-11 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 61.93 E-value: 9.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 424 IDLDT---RVALVGPNGAGKSTLLKLLTGELLPTDGMI----------RKHSHV-----KIGRYHQHLQEQLDLDL-SPL 484
Cdd:cd03297 17 IDFDLneeVTGIFGASGAGKSTLLRCIAGLEKPDGGTIvlngtvlfdsRKKINLppqqrKIGLVFQQYALFPHLNVrENL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 485 EYMMKCYPEIKEKEEMRKIIGRYGLTGKQQvSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAIN 564
Cdd:cd03297 97 AFGLKRKRNREDRISVDELLDLLGLDHLLN-RYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELK 175
|
170 180 190
....*....|....*....|....*....|..
gi 564345351 565 E----FEGGMMLVSHDFRLIQQVAQEIWVCEK 592
Cdd:cd03297 176 QikknLNIPVIFVTHDLSEAEYLADRIVVMED 207
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
409-587 |
1.67e-10 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 60.84 E-value: 1.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 409 YTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR---KHSHVKIGRYHQHL-----QEQLDLD 480
Cdd:TIGR01189 8 CSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRwngTPLAEQRDEPHENIlylghLPGLKPE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 481 LSPLE----YMMKCYPEIKEKEEMrkiIGRYGLTGKQQVsPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETI 556
Cdd:TIGR01189 88 LSALEnlhfWAAIHGGAQRTIEDA---LAAVGLTGFEDL-PAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGV 163
|
170 180 190
....*....|....*....|....*....|...
gi 564345351 557 DALADAINEF--EGGMMLVSHDFRLIQQVAQEI 587
Cdd:TIGR01189 164 ALLAGLLRAHlaRGGIVLLTTHQDLGLVEAREL 196
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
199-289 |
1.69e-10 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 61.48 E-value: 1.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 199 RLEELDADKAEMRASRILHGLGFTpAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTF 278
Cdd:cd03300 98 RLKKLPKAEIKERVAEALDLVQLE-GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRL 176
|
90
....*....|....*
gi 564345351 279 KRIL----VLVSHSQ 289
Cdd:cd03300 177 QKELgitfVFVTHDQ 191
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
400-589 |
1.78e-10 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 61.43 E-value: 1.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDgpCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLtgellptDGMIRKHSHVKI-GRYHQHLQEQLD 478
Cdd:cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLL-------NRLNDLIPGAPDeGEVLLDGKDIYD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 479 LDLSPLEYMMK-------------------CYP----EIKEKEEMRKII----GRYGLTG--KQQVSPiRNLSDGQKCRV 529
Cdd:cd03260 72 LDVDVLELRRRvgmvfqkpnpfpgsiydnvAYGlrlhGIKLKEELDERVeealRKAALWDevKDRLHA-LGLSGGQQQRL 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564345351 530 CLAwLAWQN-PHMLFLDEPTNHLDIETIDALADAINEF--EGGMMLVSHDFRLIQQVAQEIWV 589
Cdd:cd03260 151 CLA-RALANePEVLLLDEPTSALDPISTAKIEELIAELkkEYTIVIVTHNMQQAARVADRTAF 212
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
90-287 |
2.02e-10 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 61.64 E-value: 2.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAV---------------GKR--EVPIPE---HIDIY 149
Cdd:COG1119 4 LELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLItgdlpptygndvrlfGERrgGEDVWElrkRIGLV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 150 --HLTREMPPSDKtplqcVMEV------DTeramlereaerlahedaeceklMELYERLEELDADKAEmrasRILHGLGF 221
Cdd:COG1119 84 spALQLRFPRDET-----VLDVvlsgffDS----------------------IGLYREPTDEQRERAR----ELLELLGL 132
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564345351 222 TPAMQRKkLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLeeeLKTFKRI-------LVLVSH 287
Cdd:COG1119 133 AHLADRP-FGTLSQGEQRRVLIARALVKDPELLILDEPTAGLDLGARELL---LALLDKLaaegaptLVLVTH 201
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
399-611 |
2.63e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 61.63 E-value: 2.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 399 VIMVQNVSFKYtKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMI---------RKHSHV----K 465
Cdd:PRK13639 1 ILETRDLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVlikgepikyDKKSLLevrkT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 466 IGRYHQHLQEQL-------DLDLSPLEYMMkcyPEIKEKEEMRKIIGRYGLTGKQQVSPiRNLSDGQKCRVCLAWLAWQN 538
Cdd:PRK13639 80 VGIVFQNPDDQLfaptveeDVAFGPLNLGL---SKEEVEKRVKEALKAVGMEGFENKPP-HHLSGGQKKRVAIAGILAMK 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564345351 539 PHMLFLDEPTNHLD---IETIDALADAINEfEGGMMLVS-HDFRLIQQVAQEIWVCEKQTITK--WPGDILAYKEHLKS 611
Cdd:PRK13639 156 PEIIVLDEPTSGLDpmgASQIMKLLYDLNK-EGITIIIStHDVDLVPVYADKVYVMSDGKIIKegTPKEVFSDIETIRK 233
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
400-555 |
3.31e-10 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 60.58 E-value: 3.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSH----VKIGRYHQH--- 472
Cdd:cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHdlalADPAWLRRQvgv 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 473 -LQEQLDLDLSPLEYMMKCYP--EIKEKEEMRKIIGRYG-----------LTGKQQVSpirnLSDGQKCRVCLAWLAWQN 538
Cdd:cd03252 81 vLQENVLFNRSIRDNIALADPgmSMERVIEAAKLAGAHDfiselpegydtIVGEQGAG----LSGGQRQRIAIARALIHN 156
|
170
....*....|....*..
gi 564345351 539 PHMLFLDEPTNHLDIET 555
Cdd:cd03252 157 PRILIFDEATSALDYES 173
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
429-595 |
3.38e-10 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 60.20 E-value: 3.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 429 RVALVGPNGAGKSTLLKLLTGELLPTDGMI----RKHSHVKIGRY-------------HQHLQEQLDLDLSPleyMMKCY 491
Cdd:cd03298 26 ITAIVGPSGSGKSTLLNLIAGFETPQSGRVlingVDVTAAPPADRpvsmlfqennlfaHLTVEQNVGLGLSP---GLKLT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 492 PEikEKEEMRKIIGRYGLTGKQQVSPiRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEF--EGG 569
Cdd:cd03298 103 AE--DRQAIEVALARVGLAGLEKRLP-GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLhaETK 179
|
170 180
....*....|....*....|....*...
gi 564345351 570 M--MLVSHDFRLIQQVAQEIWVCEKQTI 595
Cdd:cd03298 180 MtvLMVTHQPEDAKRLAQRVVFLDNGRI 207
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
94-307 |
4.11e-10 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 60.08 E-value: 4.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLlsavgkrevpipehidIYHLTREMPPSDKTP----LQCVMEV 169
Cdd:cd03265 5 NLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTT----------------IKMLTTLLKPTSGRAtvagHDVVREP 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 170 DTERAMLEREAERLAHEDA-ECEKLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKkLKDFSGGWRMRVALARALF 248
Cdd:cd03265 69 REVRRRIGIVFQDLSVDDElTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-VKTYSGGMRRRLEIARSLV 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564345351 249 IRPFMLLLDEPTNHLDLDA--CVW--LEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKL 307
Cdd:cd03265 148 HRPEVLFLDEPTIGLDPQTraHVWeyIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRI 210
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
234-295 |
4.72e-10 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 62.46 E-value: 4.72e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564345351 234 SGGWRMRVALARALFIRPFMLLLDEPTNHLD------LDACVwleEELKTFKRILVLVSHSQDFLNGV 295
Cdd:COG4618 469 SGGQRQRIGLARALYGDPRLVVLDEPNSNLDdegeaaLAAAI---RALKARGATVVVITHRPSLLAAV 533
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
89-329 |
4.91e-10 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 62.54 E-value: 4.91e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 89 DVHIINLSLTFHGQE--LLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVP---------IP-EHIDIYHLTRemp 156
Cdd:COG2274 473 DIELENVSFRYPGDSppVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPtsgrilidgIDlRQIDPASLRR--- 549
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 157 psdktplQCVMeVDTERAMLE---REAERLAHEDAEceklmelyerLEELdadkaeMRASRILHGLGFTPAMQRK---KL 230
Cdd:COG2274 550 -------QIGV-VLQDVFLFSgtiRENITLGDPDAT----------DEEI------IEAARLAGLHDFIEALPMGydtVV 605
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 231 KD----FSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDAcvwlEEE----LKTFK--RILVLVSHSQDFLNgVCTNII 300
Cdd:COG2274 606 GEggsnLSGGQRQRLAIARALLRNPRILILDEATSALDAET----EAIilenLRRLLkgRTVIIIAHRLSTIR-LADRII 680
|
250 260 270
....*....|....*....|....*....|..
gi 564345351 301 HMHNKKLKyYTGNYDQYVKTR---LELEENQM 329
Cdd:COG2274 681 VLDKGRIV-EDGTHEELLARKglyAELVQQQL 711
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
94-304 |
5.08e-10 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 60.14 E-value: 5.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAV--------------GKREVPIPEHiDIYHL-------- 151
Cdd:cd03219 5 GLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLIsgflrptsgsvlfdGEDITGLPPH-EIARLgigrtfqi 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 152 TREMPpsDKTPLQCVM---EVDTERAMLEREAERlaHEDAECEKLMELYERLEeLdADKAEMRASRILHGlgftpamQRK 228
Cdd:cd03219 84 PRLFP--ELTVLENVMvaaQARTGSGLLLARARR--EEREARERAEELLERVG-L-ADLADRPAGELSYG-------QQR 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564345351 229 klkdfsggwrmRVALARALFIRPFMLLLDEPT---NHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHN 304
Cdd:cd03219 151 -----------RLEIARALATDPKLLLLDEPAaglNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQ 218
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
400-615 |
5.11e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 60.80 E-value: 5.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGP----CIYNnLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHV----------- 464
Cdd:PRK13634 3 ITFQKVEHRYQYKTPferrALYD-VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVitagkknkklk 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 465 ----KIGRYHQHLQEQL-------DLDLSPLEYMMkcyPEIKEKEEMRKIIGRYGLTGK-QQVSPIrNLSDGQKCRVCLA 532
Cdd:PRK13634 82 plrkKVGIVFQFPEHQLfeetvekDICFGPMNFGV---SEEDAKQKAREMIELVGLPEElLARSPF-ELSGGQMRRVAIA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 533 WLAWQNPHMLFLDEPTNHLDIETIDALADAINEF--EGGM--MLVSHDFRLIQQVAQEIWVCEKQTITKW--PGDILAYK 606
Cdd:PRK13634 158 GVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLhkEKGLttVLVTHSMEDAARYADQIVVMHKGTVFLQgtPREIFADP 237
|
....*....
gi 564345351 607 EHLKSKLVD 615
Cdd:PRK13634 238 DELEAIGLD 246
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
94-307 |
5.22e-10 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 59.81 E-value: 5.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQ----ELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVP-----IPEHIDIYHLTremppsdktplq 164
Cdd:cd03255 5 NLSKTYGGGgekvQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPtsgevRVDGTDISKLS------------ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 165 cvmevDTERAMLERE------------AERLAHEDAEceklmeLYERLEELDADKAEMRASRILHGLGFTPAMQRK--KL 230
Cdd:cd03255 73 -----EKELAAFRRRhigfvfqsfnllPDLTALENVE------LPLLLAGVPKKERRERAEELLERVGLGDRLNHYpsEL 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 231 kdfSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDAC--VW--LEEELKTFKRILVLVSHSQDfLNGVCTNIIHMHNKK 306
Cdd:cd03255 142 ---SGGQQQRVAIARALANDPKIILADEPTGNLDSETGkeVMelLRELNKEAGTTIVVVTHDPE-LAEYADRIIELRDGK 217
|
.
gi 564345351 307 L 307
Cdd:cd03255 218 I 218
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
429-587 |
5.52e-10 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 61.26 E-value: 5.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 429 RVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQE---------QLDLDLSPLE--YMMKCYPEIKE- 496
Cdd:COG4586 50 IVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYVPFKRRKEFARRigvvfgqrsQLWWDLPAIDsfRLLKAIYRIPDa 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 497 --KEEMRKIIGRYGLTGKQQVsPIRNLSDGQ--KCRVCLAWLawQNPHMLFLDEPTNHLDIETIDALADAINEF--EGG- 569
Cdd:COG4586 130 eyKKRLDELVELLDLGELLDT-PVRQLSLGQrmRCELAAALL--HRPKILFLDEPTIGLDVVSKEAIREFLKEYnrERGt 206
|
170
....*....|....*....
gi 564345351 570 -MMLVSHDFRLIQQVAQEI 587
Cdd:COG4586 207 tILLTSHDMDDIEALCDRV 225
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
399-589 |
7.75e-10 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 59.44 E-value: 7.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 399 VIMVQNVSFKYTKDGPCIY--NNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMI--------------RKHS 462
Cdd:cd03257 1 LLEVKNLSVSFPTGGGSVKalDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIifdgkdllklsrrlRKIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 463 HVKIGRYHQHLQEQLDldlsPLeymMKCYPEIKE---------KEEMRKIIGRYGLTGKQQVSPIRN-----LSDGQKCR 528
Cdd:cd03257 81 RKEIQMVFQDPMSSLN----PR---MTIGEQIAEplrihgklsKKEARKEAVLLLLVGVGLPEEVLNrypheLSGGQRQR 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564345351 529 VCLAW-LAwQNPHMLFLDEPTNHLD----IETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWV 589
Cdd:cd03257 154 VAIARaLA-LNPKLLIADEPTSALDvsvqAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAV 218
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
90-307 |
8.55e-10 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 59.44 E-value: 8.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHI-----DIYHLTrempPSDKTPLQ 164
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVlidgeDISGLS----EAELYRLR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 165 CVMevdterAMLEREAerlAHEDAeceklMELYE----RLEELDADKAEMRASRILHGLGFT--PAMQRKKLKDFSGGWR 238
Cdd:cd03261 77 RRM------GMLFQSG---ALFDS-----LTVFEnvafPLREHTRLSEEEIREIVLEKLEAVglRGAEDLYPAELSGGMK 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564345351 239 MRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRIL----VLVSHSQDFLNGVCTNIIHMHNKKL 307
Cdd:cd03261 143 KRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELgltsIMVTHDLDTAFAIADRIAVLYDGKI 215
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
94-310 |
8.96e-10 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 58.85 E-value: 8.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQelLSDTKLELN---SGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDIyhltremppsDKTPLQcvmevD 170
Cdd:cd03297 1 MLCVDIEKR--LPDFTLKIDfdlNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVL----------NGTVLF-----D 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 171 TERAM-----------LEREAERLAHedaeceklMELYERLE----ELDADKAEMRASRILHGLGFTPAMQRKKLKdFSG 235
Cdd:cd03297 64 SRKKInlppqqrkiglVFQQYALFPH--------LNVRENLAfglkRKRNREDRISVDELLDLLGLDHLLNRYPAQ-LSG 134
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564345351 236 GWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRIL----VLVSHSQDFLNGVCTNIIHMHNKKLKYY 310
Cdd:cd03297 135 GEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLnipvIFVTHDLSEAEYLADRIVVMEDGRLQYI 213
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
90-341 |
1.09e-09 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 59.33 E-value: 1.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAV--------GKREV----PIPEHIDI-Y-----HL 151
Cdd:COG1121 7 IELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAIlgllpptsGTVRLfgkpPRRARRRIgYvpqraEV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 152 TREMPPSdktplqcVMEVdterAMLEREAE-----RLAHEDaeCEKLMELyerLEELDADKaemRASRILHGLgftpamq 226
Cdd:COG1121 87 DWDFPIT-------VRDV----VLMGRYGRrglfrRPSRAD--REAVDEA---LERVGLED---LADRPIGEL------- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 227 rkklkdfSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEE---ELKTFKRILVLVSHSQDFLNGVCTNIIHMh 303
Cdd:COG1121 141 -------SGGQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYEllrELRREGKTILVVTHDLGAVREYFDRVLLL- 212
|
250 260 270
....*....|....*....|....*....|....*...
gi 564345351 304 NKKLkYYTGNYDQYVKtrlelEENQMKRFHWEQDQIAH 341
Cdd:COG1121 213 NRGL-VAHGPPEEVLT-----PENLSRAYGGPVALLAH 244
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
400-592 |
1.50e-09 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 58.71 E-value: 1.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKY-TKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR-KHSHVK---IGRYHQHL- 473
Cdd:cd03249 1 IEFKNVSFRYpSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILlDGVDIRdlnLRWLRSQIg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 474 ---QEQLDLDLSPLEYMMKCYPEIKEKEEMR--------KII----GRY----GLTGKQqvspirnLSDGQKCRVCLAWL 534
Cdd:cd03249 81 lvsQEPVLFDGTIAENIRYGKPDATDEEVEEaakkanihDFImslpDGYdtlvGERGSQ-------LSGGQKQRIAIARA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 535 AWQNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFRL--IQQvAQEIWVCEK 592
Cdd:cd03249 154 LLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLstIRN-ADLIAVLQN 212
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
399-625 |
2.16e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 58.98 E-value: 2.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 399 VIMVQNVSFKYTKDGPCIYNNLeFGIDLDTR----VALVGPNGAGKSTLLKLLTGELLPTDGMIR--------------- 459
Cdd:PRK13643 1 MIKFEKVNYTYQPNSPFASRAL-FDIDLEVKkgsyTALIGHTGSGKSTLLQHLNGLLQPTEGKVTvgdivvsstskqkei 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 460 KHSHVKIGRYHQHLQEQL-------DLDLSPLEYMMkcypeikEKEEMRKIIGR----YGLTGK-QQVSPIRnLSDGQKC 527
Cdd:PRK13643 80 KPVRKKVGVVFQFPESQLfeetvlkDVAFGPQNFGI-------PKEKAEKIAAEklemVGLADEfWEKSPFE-LSGGQMR 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 528 RVCLAWLAWQNPHMLFLDEPTNHLD----IETIDaLADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKW--PGD 601
Cdd:PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDpkarIEMMQ-LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCgtPSD 230
|
250 260
....*....|....*....|....
gi 564345351 602 ILAYKEHLKSklvdEEPQLTKRTH 625
Cdd:PRK13643 231 VFQEVDFLKA----HELGVPKATH 250
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
97-309 |
2.22e-09 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 57.89 E-value: 2.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 97 LTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDIYHL-TREMPPSDKtPLqcvmevdterAM 175
Cdd:cd03298 6 IRFSYGEQPMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVdVTAAPPADR-PV----------SM 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 176 LEREAERLAHEDAECEKLMELYERLEELDADKAEMRAsrILHGLGFTPAMQRKKlKDFSGGWRMRVALARALFIRPFMLL 255
Cdd:cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEV--ALARVGLAGLEKRLP-GELSGGERQRVALARVLVRDKPVLL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564345351 256 LDEPTNHLD-------LDACVWLEEELKTfkrILVLVSHSQDFLNGVCTNIIHMHNKKLKY 309
Cdd:cd03298 152 LDEPFAALDpalraemLDLVLDLHAETKM---TVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
400-616 |
2.22e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 59.07 E-value: 2.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPCI---YNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR---------------KH 461
Cdd:PRK13641 3 IKFENVDYIYSPGTPMEkkgLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITiagyhitpetgnknlKK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 462 SHVKIGRYHQHLQEQL-------DLDLSPLEYmmkCYPEIKEKEEMRKIIGRYGLtgKQQV---SPIrNLSDGQKCRVCL 531
Cdd:PRK13641 83 LRKKVSLVFQFPEAQLfentvlkDVEFGPKNF---GFSEDEAKEKALKWLKKVGL--SEDLiskSPF-ELSGGQMRRVAI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 532 AWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGG---MMLVSHDFRLIQQVAQEIWVCEKQTITKW--PGDILAYK 606
Cdd:PRK13641 157 AGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAghtVILVTHNMDDVAEYADDVLVLEHGKLIKHasPKEIFSDK 236
|
250
....*....|
gi 564345351 607 EHLKSKLVDE 616
Cdd:PRK13641 237 EWLKKHYLDE 246
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
400-587 |
2.25e-09 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 57.61 E-value: 2.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYtKDGPCIyNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR------KHSHVKIGR----- 468
Cdd:cd03268 1 LKTNDLTKTY-GKKRVL-DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITfdgksyQKNIEALRRigali 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 469 ----YHQHLQEQLDLDLSPLEYMmkcypeiKEKEEMRKIIGRYGL--TGKQQVspiRNLSDGQKCRVCLAWLAWQNPHML 542
Cdd:cd03268 79 eapgFYPNLTARENLRLLARLLG-------IRKKRIDEVLDVVGLkdSAKKKV---KGFSLGMKQRLGIALALLGNPDLL 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 564345351 543 FLDEPTNHLDIETIDALADAI---NEFEGGMMLVSHDFRLIQQVAQEI 587
Cdd:cd03268 149 ILDEPTNGLDPDGIKELRELIlslRDQGITVLISSHLLSEIQKVADRI 196
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
92-302 |
2.50e-09 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 57.96 E-value: 2.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 92 IINLSLTF-HGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGkREVPIPE---HIDIYHLTREMPPSDKT------ 161
Cdd:cd03256 3 VENLSKTYpNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLN-GLVEPTSgsvLIDGTDINKLKGKALRQlrrqig 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 162 ---------PLQCVME---------VDTERAMLER--EAERlahEDAeceklmelYERLEELD-ADKAEMRASRIlhglg 220
Cdd:cd03256 82 mifqqfnliERLSVLEnvlsgrlgrRSTWRSLFGLfpKEEK---QRA--------LAALERVGlLDKAYQRADQL----- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 221 ftpamqrkklkdfSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACvwlEEELKTFKRI------LVLVS-HSQDFLN 293
Cdd:cd03256 146 -------------SGGQQQRVAIARALMQQPKLILADEPVASLDPASS---RQVMDLLKRInreegiTVIVSlHQVDLAR 209
|
....*....
gi 564345351 294 GVCTNIIHM 302
Cdd:cd03256 210 EYADRIVGL 218
|
|
| CP_lyasePhnL |
TIGR02324 |
phosphonate C-P lyase system protein PhnL; Members of this family are the PhnL protein of C-P ... |
90-302 |
2.95e-09 |
|
phosphonate C-P lyase system protein PhnL; Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Pssm-ID: 131377 [Multi-domain] Cd Length: 224 Bit Score: 57.79 E-value: 2.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTF--HGQ-----ELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDIYHLTREMppsDKTP 162
Cdd:TIGR02324 2 LEVEDLSKTFtlHQQggvrlPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWV---DLAQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 163 LqcvmevdTERAMLE-REAE------------RLAHEDAECEKLMEL-YERleeldaDKAEMRASRILHGLGFTPAMQRK 228
Cdd:TIGR02324 79 A-------SPREVLEvRRKTigyvsqflrvipRVSALEVVAEPLLERgVPR------EAARARARELLARLNIPERLWHL 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564345351 229 KLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDL---DACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHM 302
Cdd:TIGR02324 146 PPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAanrQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
199-307 |
3.18e-09 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 57.75 E-value: 3.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 199 RLEELDADKAEMRASRILHGLGFTPAMQRK--KLkdfSGGWRMRVALARALFIRPFMLLLDEPTNHLD-------LDAcv 269
Cdd:COG1136 112 LLAGVSRKERRERARELLERVGLGDRLDHRpsQL---SGGQQQRVAIARALVNRPKLILADEPTGNLDsktgeevLEL-- 186
|
90 100 110
....*....|....*....|....*....|....*...
gi 564345351 270 wLEEELKTFKRILVLVSHSQDFLNgVCTNIIHMHNKKL 307
Cdd:COG1136 187 -LRELNRELGTTIVMVTHDPELAA-RADRVIRLRDGRI 222
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
90-310 |
3.19e-09 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 57.51 E-value: 3.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQEL--LSDTKLELNSGRRYGLIGLNGIGKSMLLSAvgkrevpipehidiyhLTREMPPSDKTPLQCVM 167
Cdd:cd03263 1 LQIRNLTKTYKKGTKpaVDDLSLNVYKGEIFGLLGHNGAGKTTTLKM----------------LTGELRPTSGTAYINGY 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 168 EVDTERAMLERE-----AERLAHEDAECEKLMELYERLEELDADKAEMRASRILHGLGFTPamQRKKL-KDFSGGWRMRV 241
Cdd:cd03263 65 SIRTDRKAARQSlgycpQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTD--KANKRaRTLSGGMKRKL 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564345351 242 ALARALFIRPFMLLLDEPTnhLDLDAC----VW--LEEELKtfKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYY 310
Cdd:cd03263 143 SLAIALIGGPSVLLLDEPT--SGLDPAsrraIWdlILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCI 213
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
400-580 |
3.41e-09 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 57.04 E-value: 3.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR----KHSHVKIGRYHQHL-- 473
Cdd:cd03369 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEidgiDISTIPLEDLRSSLti 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 474 --QE------QLDLDLSPleymmkcYPEIKEKEEMRKI-IGRYGLtgkqqvspirNLSDGQKCRVCLAWLAWQNPHMLFL 544
Cdd:cd03369 87 ipQDptlfsgTIRSNLDP-------FDEYSDEEIYGALrVSEGGL----------NLSQGQRQLLCLARALLKRPRVLVL 149
|
170 180 190
....*....|....*....|....*....|....*....
gi 564345351 545 DEPTNHLDIETiDALADAI--NEFEGGMML-VSHDFRLI 580
Cdd:cd03369 150 DEATASIDYAT-DALIQKTirEEFTNSTILtIAHRLRTI 187
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
400-592 |
3.55e-09 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 57.63 E-value: 3.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPcIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHvKIGRYHQH-LQEQL- 477
Cdd:cd03253 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQ-DIREVTLDsLRRAIg 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 478 --------------------DLDLSPLEYMMKC-----YPEIKE-KEEMRKIIGRYGLtgkqqvspirNLSDGQKCRVCL 531
Cdd:cd03253 79 vvpqdtvlfndtigynirygRPDATDEEVIEAAkaaqiHDKIMRfPDGYDTIVGERGL----------KLSGGEKQRVAI 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564345351 532 AWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGG--MMLVSHDFRLIQQvAQEIWVCEK 592
Cdd:cd03253 149 ARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGrtTIVIAHRLSTIVN-ADKIIVLKD 210
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
94-265 |
3.79e-09 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 57.82 E-value: 3.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAvgkrevpipehidiyhLTREMPPS------DKTPLQ--C 165
Cdd:COG4559 6 NLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKL----------------LTGELTPSsgevrlNGRPLAawS 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 166 VMEVDTERAMLEREAE--------------RLAH--EDAECEKLMElyERLEELDADkaeMRASRILHGLgftpamqrkk 229
Cdd:COG4559 70 PWELARRRAVLPQHSSlafpftveevvalgRAPHgsSAAQDRQIVR--EALALVGLA---HLAGRSYQTL---------- 134
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 564345351 230 lkdfSGGWRMRVALARAL-------FIRPFMLLLDEPTNHLDL 265
Cdd:COG4559 135 ----SGGEQQRVQLARVLaqlwepvDGGPRWLFLDEPTSALDL 173
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
88-296 |
4.44e-09 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 57.72 E-value: 4.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 88 TDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKreVPIPEHIDIYHltREMPPSDKTPLQCVM 167
Cdd:PRK11231 1 MTLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFAR--LLTPQSGTVFL--GDKPISMLSSRQLAR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 168 EVdterAMLEREaeRLAHEDAECEKLME--------LYERLEELDADKAE--MRASRILHglgftpaMQRKKLKDFSGGW 237
Cdd:PRK11231 77 RL----ALLPQH--HLTPEGITVRELVAygrspwlsLWGRLSAEDNARVNqaMEQTRINH-------LADRRLTDLSGGQ 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564345351 238 RMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEE---ELKTFKRILVLVSHSqdfLNGVC 296
Cdd:PRK11231 144 RQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRlmrELNTQGKTVVTVLHD---LNQAS 202
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
94-265 |
6.52e-09 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 57.09 E-value: 6.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAvgkrevpipehidiyhLTREMPPS-----------DKTP 162
Cdd:PRK13548 7 NLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRA----------------LSGELSPDsgevrlngrplADWS 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 163 LQcvmEVDTERAMLeREAERLA-----HEDAEceklMELYERLEELDADKAEMRAsrilhglgftpAMQRKKLKDF---- 233
Cdd:PRK13548 71 PA---ELARRRAVL-PQHSSLSfpftvEEVVA----MGRAPHGLSRAEDDALVAA-----------ALAQVDLAHLagrd 131
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 564345351 234 ----SGGWRMRVALARAL------FIRPFMLLLDEPTNHLDL 265
Cdd:PRK13548 132 ypqlSGGEQQRVQLARVLaqlwepDGPPRWLLLDEPTSALDL 173
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
400-579 |
6.69e-09 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 56.34 E-value: 6.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPC--IYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR-------KHSHVKIGRY- 469
Cdd:cd03255 1 IELKNLSKTYGGGGEKvqALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRvdgtdisKLSEKELAAFr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 470 HQHL----QeQLDL--DLSPLEY----MMKCYPEIKEKEEM-RKIIGRYGLTGKQQVSPiRNLSDGQKCRVCLA-WLAwQ 537
Cdd:cd03255 81 RRHIgfvfQ-SFNLlpDLTALENvelpLLLAGVPKKERRERaEELLERVGLGDRLNHYP-SELSGGQQQRVAIArALA-N 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 564345351 538 NPHMLFLDEPTNHLDIET----IDALADaINEFEG-GMMLVSHDFRL 579
Cdd:cd03255 158 DPKIILADEPTGNLDSETgkevMELLRE-LNKEAGtTIVVVTHDPEL 203
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
202-264 |
7.79e-09 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 58.54 E-value: 7.79e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564345351 202 ELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:COG4172 395 GLSAAERRARVAEALEEVGLDPAARHRYPHEFSGGQRQRIAIARALILEPKLLVLDEPTSALD 457
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
202-264 |
8.27e-09 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 58.56 E-value: 8.27e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564345351 202 ELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:PRK15134 395 TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
234-290 |
8.78e-09 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 57.80 E-value: 8.78e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564345351 234 SGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELktfKRIL-------VLVSHSQD 290
Cdd:COG3842 137 SGGQQQRVALARALAPEPRVLLLDEPLSALDAKLREEMREEL---RRLQrelgitfIYVTHDQE 197
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
90-307 |
9.39e-09 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 56.58 E-value: 9.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDI--------------------- 148
Cdd:cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFggedatdvpvqernvgfvfqh 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 149 YHLTREMPPSDKTPLqcvmevdterAMLEREAERLAHEDAECEKLMELYE--RLEELdadkaemrASRILHGLgftpamq 226
Cdd:cd03296 83 YALFRHMTVFDNVAF----------GLRVKPRSERPPEAEIRAKVHELLKlvQLDWL--------ADRYPAQL------- 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 227 rkklkdfSGGWRMRVALARALFIRPFMLLLDEPTNHldLDACVwlEEELKTFKRIL--------VLVSHSQDFLNGVCTN 298
Cdd:cd03296 138 -------SGGQRQRVALARALAVEPKVLLLDEPFGA--LDAKV--RKELRRWLRRLhdelhvttVFVTHDQEEALEVADR 206
|
....*....
gi 564345351 299 IIHMHNKKL 307
Cdd:cd03296 207 VVVMNKGRI 215
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
94-307 |
1.05e-08 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 56.25 E-value: 1.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDIYHLTREMPPSDktplqcVMEVDTER 173
Cdd:PRK09493 6 NVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVD------ERLIRQEA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 174 AMLEREAERLAHEDAeCEKLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKKlKDFSGGWRMRVALARALFIRPFM 253
Cdd:PRK09493 80 GMVFQQFYLFPHLTA-LENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP-SELSGGQQQRVAIARALAVKPKL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564345351 254 LLLDEPTNHLD-------LDACVWLEEELKTfkriLVLVSHSQDFLNGVCTNIIHMHNKKL 307
Cdd:PRK09493 158 MLFDEPTSALDpelrhevLKVMQDLAEEGMT----MVIVTHEIGFAEKVASRLIFIDKGRI 214
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
400-563 |
1.11e-08 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 56.08 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPCIyNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMI----RKHSHVKIGRYHQH--- 472
Cdd:cd03254 3 IEFENVNFSYDEKKPVL-KDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIlidgIDIRDISRKSLRSMigv 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 473 -LQEQLDLDLSPLEYMMKCYPEIKEKEEMR--KIIGRYGLTGK------QQVSPI-RNLSDGQKCRVCLAWLAWQNPHML 542
Cdd:cd03254 82 vLQDTFLFSGTIMENIRLGRPNATDEEVIEaaKEAGAHDFIMKlpngydTVLGENgGNLSQGERQLLAIARAMLRDPKIL 161
|
170 180
....*....|....*....|.
gi 564345351 543 FLDEPTNHLDIETIDALADAI 563
Cdd:cd03254 162 ILDEATSNIDTETEKLIQEAL 182
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
94-288 |
1.14e-08 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 56.04 E-value: 1.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPE-----------------HIDIYHLTREM- 155
Cdd:cd03260 5 DLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGapdegevlldgkdiydlDVDVLELRRRVg 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 156 ------PPSDKTplqcVME--VDTERAMLEREAERLAHEDAECEKLMELYERLeeldADKaemrasriLHGLGFtpamqr 227
Cdd:cd03260 85 mvfqkpNPFPGS----IYDnvAYGLRLHGIKLKEELDERVEEALRKAALWDEV----KDR--------LHALGL------ 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564345351 228 kklkdfSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKR--ILVLVSHS 288
Cdd:cd03260 143 ------SGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKeyTIVIVTHN 199
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
397-575 |
1.24e-08 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 55.63 E-value: 1.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 397 PPVIMVQNVSFkyTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSH-------VKIGRY 469
Cdd:PRK13543 9 PPLLAAHALAF--SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKtatrgdrSRFMAY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 470 HQHLqEQLDLDLSPLEYM-MKCYPEIKEKEEM-RKIIGRYGLTGKQQvSPIRNLSDGQKCRVCLAWLaWQNPHMLF-LDE 546
Cdd:PRK13543 87 LGHL-PGLKADLSTLENLhFLCGLHGRRAKQMpGSALAIVGLAGYED-TLVRQLSAGQKKRLALARL-WLSPAPLWlLDE 163
|
170 180 190
....*....|....*....|....*....|..
gi 564345351 547 PTNHLDIETIDALADAINEF---EGGMMLVSH 575
Cdd:PRK13543 164 PYANLDLEGITLVNRMISAHlrgGGAALVTTH 195
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
403-592 |
1.25e-08 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 55.94 E-value: 1.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 403 QNVSFKY-TKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMI-----------RKHSHVKIGRYH 470
Cdd:cd03248 15 QNVTFAYpTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVlldgkpisqyeHKYLHSKVSLVG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 471 QH-------LQEQLDLDLSPLEYMmkCYPEIKEKEEMRKIIGRY--------GLTGKQqvspirnLSDGQKCRVCLAWLA 535
Cdd:cd03248 95 QEpvlfarsLQDNIAYGLQSCSFE--CVKEAAQKAHAHSFISELasgydtevGEKGSQ-------LSGGQKQRVAIARAL 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564345351 536 WQNPHMLFLDEPTNHLDIETIDALADAINEF--EGGMMLVSHDFRLIQQvAQEIWVCEK 592
Cdd:cd03248 166 IRNPQVLILDEATSALDAESEQQVQQALYDWpeRRTVLVIAHRLSTVER-ADQILVLDG 223
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
199-288 |
1.30e-08 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 55.56 E-value: 1.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 199 RLEELDADKAEMRASRILHGLGftpamqrkkLKDF--------SGGWRMRVALARALFIRPFMLLLDEPTNHLD----LD 266
Cdd:cd03293 99 ELQGVPKAEARERAEELLELVG---------LSGFenayphqlSGGMRQRVALARALAVDPDVLLLDEPFSALDaltrEQ 169
|
90 100
....*....|....*....|..
gi 564345351 267 ACVWLEEELKTFKRILVLVSHS 288
Cdd:cd03293 170 LQEELLDIWRETGKTVLLVTHD 191
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
105-290 |
1.39e-08 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 55.80 E-value: 1.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 105 LSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHI-----DIYHLTREMP-----PSDKT--PLQCVMEvDTE 172
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKIllngkDITNLPPEKRdisyvPQNYAlfPHMTVYK-NIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 173 RAMLEREAERLAHEdaecEKLMELyerleeldadkAEMrasrilhgLGFTPAMQRKKLKdFSGGWRMRVALARALFIRPF 252
Cdd:cd03299 94 YGLKKRKVDKKEIE----RKVLEI-----------AEM--------LGIDHLLNRKPET-LSGGEQQRVAIARALVVNPK 149
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 564345351 253 MLLLDEPTNHLDLDACVWLEEELKTFKR---ILVL-VSHSQD 290
Cdd:cd03299 150 ILLLDEPFSALDVRTKEKLREELKKIRKefgVTVLhVTHDFE 191
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
400-587 |
1.41e-08 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 56.04 E-value: 1.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYtKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMI---------------RKHSHv 464
Cdd:cd03256 1 IEVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVlidgtdinklkgkalRQLRR- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 465 KIGRYHQHLQ--EQLDL----------DLSPLEYMMKCYPEIkEKEEMRKIIGRYGLTGK--QQVSpirNLSDGQKCRVC 530
Cdd:cd03256 79 QIGMIFQQFNliERLSVlenvlsgrlgRRSTWRSLFGLFPKE-EKQRALAALERVGLLDKayQRAD---QLSGGQQQRVA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564345351 531 LAWLAWQNPHMLFLDEPTNHLDIET----IDALADaINEFEGGMMLVS-HDFRLIQQVAQEI 587
Cdd:cd03256 155 IARALMQQPKLILADEPVASLDPASsrqvMDLLKR-INREEGITVIVSlHQVDLAREYADRI 215
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
199-288 |
1.51e-08 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 55.87 E-value: 1.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 199 RLEELDADKAEMRASRILHGLGftpamqrkkLKDF--------SGGWRMRVALARALFIRPFMLLLDEPTNHLD----LD 266
Cdd:COG1116 106 ELRGVPKAERRERARELLELVG---------LAGFedayphqlSGGMRQRVAIARALANDPEVLLMDEPFGALDaltrER 176
|
90 100
....*....|....*....|..
gi 564345351 267 ACVWLEEELKTFKRILVLVSHS 288
Cdd:COG1116 177 LQDELLRLWQETGKTVLFVTHD 198
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
431-554 |
1.61e-08 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 55.28 E-value: 1.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 431 ALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHvKIGRYHQHLQEQL-----DLDLSP-------LEYM--MKCYPEIKE 496
Cdd:cd03264 29 GLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQ-DVLKQPQKLRRRIgylpqEFGVYPnftvrefLDYIawLKGIPSKEV 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 564345351 497 KEEMRKIIGRYGLTGKQQvSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIE 554
Cdd:cd03264 108 KARVDEVLELVNLGDRAK-KKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
200-307 |
1.65e-08 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 55.52 E-value: 1.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 200 LEELDADKAEMRASRILH--GLGftpamQR-----KKLkdfSGGWRMRVALARALFIRPFMLLLDEPTNHLD-------L 265
Cdd:COG4181 115 LELAGRRDARARARALLErvGLG-----HRldhypAQL---SGGEQQRVALARAFATEPAILFADEPTGNLDaatgeqiI 186
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 564345351 266 DACVWLEEELKTfkrILVLVSHSQDfLNGVCTNIIHMHNKKL 307
Cdd:COG4181 187 DLLFELNRERGT---TLVLVTHDPA-LAARCDRVLRLRAGRL 224
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
94-321 |
1.76e-08 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 56.66 E-value: 1.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQE----LLSDTKLELNSGRRYGLIGLNGIGKSM-------LLSAVGK---------REV-PIPEHidiyHLT 152
Cdd:PRK09473 17 DLRVTFSTPDgdvtAVNDLNFSLRAGETLGIVGESGSGKSQtafalmgLLAANGRiggsatfngREIlNLPEK----ELN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 153 R------EMPPSDK-TPLQCVMEVDteramlereaerlahedaecEKLMELYERLEELDADKAEMRASRILHGLGFTPAM 225
Cdd:PRK09473 93 KlraeqiSMIFQDPmTSLNPYMRVG--------------------EQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEAR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 226 QRKKL--KDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDA---CVWLEEELKT-FKRILVLVSHSQDFLNGVCTNI 299
Cdd:PRK09473 153 KRMKMypHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVqaqIMTLLNELKReFNTAIIMITHDLGVVAGICDKV 232
|
250 260
....*....|....*....|..
gi 564345351 300 IHMhnkklkyYTGNYDQYVKTR 321
Cdd:PRK09473 233 LVM-------YAGRTMEYGNAR 247
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
430-593 |
1.79e-08 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 55.49 E-value: 1.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 430 VALVGPNGAGKSTLLKLLTGELLPTDGMIR--------KHSHVKI---GRYHQHLQEQLDLDLSPLEYMMkcypEIKEKE 498
Cdd:cd03237 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEieldtvsyKPQYIKAdyeGTVRDLLSSITKDFYTHPYFKT----EIAKPL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 499 EMRKIIgrygltgKQQVspiRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEF----EGGMMLVS 574
Cdd:cd03237 104 QIEQIL-------DREV---PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFaennEKTAFVVE 173
|
170
....*....|....*....
gi 564345351 575 HDFRLIQQVAQEIWVCEKQ 593
Cdd:cd03237 174 HDIIMIDYLADRLIVFEGE 192
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
429-588 |
1.89e-08 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 55.62 E-value: 1.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 429 RVALVGPNGAGKSTLLKLLTgellptdGMIRKHSHVkigryhqHLQEQLDLDLSPLE---------------YMMKCY-- 491
Cdd:COG4138 24 LIHLIGPNGAGKSTLLARMA-------GLLPGQGEI-------LLNGRPLSDWSAAElarhraylsqqqsppFAMPVFqy 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 492 ---------PEIKEKEEMRKIIGRYGLTGKQQvSPIRNLSDGQKCRVCLAWLAWQ-----NPH--MLFLDEPTNHLDIET 555
Cdd:COG4138 90 lalhqpagaSSEAVEQLLAQLAEALGLEDKLS-RPLTQLSGGEWQRVRLAAVLLQvwptiNPEgqLLLLDEPMNSLDVAQ 168
|
170 180 190
....*....|....*....|....*....|....*.
gi 564345351 556 IDALADAINEF--EGGMMLVS-HDFRLIQQVAQEIW 588
Cdd:COG4138 169 QAALDRLLRELcqQGITVVMSsHDLNHTLRHADRVW 204
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
508-625 |
2.08e-08 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 57.10 E-value: 2.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 508 GLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFRLIQQVAQEI 587
Cdd:PRK10636 137 GFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKI 216
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 564345351 588 WVCEKQTITKWPGDILAYKEHLKSKLVDE----EPQLTKRTH 625
Cdd:PRK10636 217 IHIEQQSLFEYTGNYSSFEVQRATRLAQQqamyESQQERVAH 258
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
90-306 |
2.45e-08 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 53.93 E-value: 2.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHG--QELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAvgkrevpipehidiyhLTREMPPS------DKT 161
Cdd:cd03228 1 IEFKNVSFSYPGrpKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKL----------------LLRLYDPTsgeiliDGV 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 162 PLQcvmevdteramlereaerlahedaeceklmelyerleelDADKAEMRaSRIlhglGFTPamQRKKL-----KD--FS 234
Cdd:cd03228 65 DLR---------------------------------------DLDLESLR-KNI----AYVP--QDPFLfsgtiREniLS 98
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564345351 235 GGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTF--KRILVLVSHSqdfLNGV--CTNIIHMHNKK 306
Cdd:cd03228 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALakGKTVIVIAHR---LSTIrdADRIIVLDDGR 171
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
423-589 |
2.73e-08 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 55.04 E-value: 2.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 423 GIDLD----TRVALVGPNGAGKSTLLKLLTGELLPTDGMI--------RKHSH-------------------------VK 465
Cdd:COG0411 22 DVSLEvergEIVGLIGPNGAGKTTLFNLITGFYRPTSGRIlfdgrditGLPPHriarlgiartfqnprlfpeltvlenVL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 466 IGRyHQHLQEQLDLDLSPLEYMMKcyPEIKEKEEMRKIIGRYGLTGKQQVsPIRNLSDGQKCRV----CLAwlawQNPHM 541
Cdd:COG0411 102 VAA-HARLGRGLLAALLRLPRARR--EEREARERAEELLERVGLADRADE-PAGNLSYGQQRRLeiarALA----TEPKL 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 564345351 542 LFLDEPT---NHLDIETIDALADAINEFEG-GMMLVSHDFRLIQQVAQEIWV 589
Cdd:COG0411 174 LLLDEPAaglNPEETEELAELIRRLRDERGiTILLIEHDMDLVMGLADRIVV 225
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
90-307 |
2.91e-08 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 54.99 E-value: 2.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLsavgKrevpipehidiyHLTREMPPSDKTplqcvMEV 169
Cdd:COG1127 6 IEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLL----K------------LIIGLLRPDSGE-----ILV 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 170 DTER--AMLEREAERLAHE-----------DAeceklMELYE----RLEE---LDADKAEMRASRILH--GLgftPAMQR 227
Cdd:COG1127 65 DGQDitGLSEKELYELRRRigmlfqggalfDS-----LTVFEnvafPLREhtdLSEAEIRELVLEKLElvGL---PGAAD 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 228 KKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRIL----VLVSHSQDFLNGVCTNIIHMH 303
Cdd:COG1127 137 KMPSELSGGMRKRVALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDELgltsVVVTHDLDSAFAIADRVAVLA 216
|
....
gi 564345351 304 NKKL 307
Cdd:COG1127 217 DGKI 220
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
202-307 |
2.98e-08 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 56.73 E-value: 2.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 202 ELDADKAEMRASRILHGLGFTPAMQRKKLKDF----SGGWRMRVALARALFIRPFMLLLDEPTNHLD-------LDACVW 270
Cdd:TIGR03269 393 ELPDELARMKAVITLKMVGFDEEKAEEILDKYpdelSEGERHRVALAQVLIKEPRIVILDEPTGTMDpitkvdvTHSILK 472
|
90 100 110
....*....|....*....|....*....|....*...
gi 564345351 271 LEEEL-KTFkrilVLVSHSQDFLNGVCTNIIHMHNKKL 307
Cdd:TIGR03269 473 AREEMeQTF----IIVSHDMDFVLDVCDRAALMRDGKI 506
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
400-587 |
3.73e-08 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 53.34 E-value: 3.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYtkDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRkhshvkigryhqhlqeqldL 479
Cdd:cd03229 1 LELKNVSKRY--GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL-------------------I 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 480 DLSPLEYMMKCYPEIKEKEEMrkIIGRYGL----TGKQQVSpiRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIET 555
Cdd:cd03229 60 DGEDLTDLEDELPPLRRRIGM--VFQDFALfphlTVLENIA--LGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPIT 135
|
170 180 190
....*....|....*....|....*....|....*.
gi 564345351 556 ---IDALADAINEFEG-GMMLVSHDFRLIQQVAQEI 587
Cdd:cd03229 136 rreVRALLKSLQAQLGiTVVLVTHDLDEAARLADRV 171
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
431-587 |
3.86e-08 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 54.21 E-value: 3.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 431 ALVGPNGAGKSTLLKLLTGELLPTDGMIR-KHSHVKIGRYHQ--HLQEQ--LDLDLSPLEYMM-----KCYPEIKEKEEM 500
Cdd:cd03269 30 GLLGPNGAGKTTTIRMILGIILPDSGEVLfDGKPLDIAARNRigYLPEErgLYPKMKVIDQLVylaqlKGLKKEEARRRI 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 501 RKIIGRYGLTGKQQvSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGG---MMLVSHDF 577
Cdd:cd03269 110 DEWLERLELSEYAN-KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAgktVILSTHQM 188
|
170
....*....|
gi 564345351 578 RLIQQVAQEI 587
Cdd:cd03269 189 ELVEELCDRV 198
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
90-316 |
4.35e-08 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 55.48 E-value: 4.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHI-----DI---------------- 148
Cdd:PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIrfhgtDVsrlhardrkvgfvfqh 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 149 YHLTREMPPSDKtplqcvmeVDTERAMLEREaERLaHEDAECEKLMELYE--RLEELdadkaemrASRIlhglgftPAmq 226
Cdd:PRK10851 83 YALFRHMTVFDN--------IAFGLTVLPRR-ERP-NAAAIKAKVTQLLEmvQLAHL--------ADRY-------PA-- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 227 rkklkDFSGGWRMRVALARALFIRPFMLLLDEPTNHldLDACV------WLEEELKTFKRILVLVSHSQDFLNGVCTNII 300
Cdd:PRK10851 136 -----QLSGGQKQRVALARALAVEPQILLLDEPFGA--LDAQVrkelrrWLRQLHEELKFTSVFVTHDQEEAMEVADRVV 208
|
250
....*....|....*.
gi 564345351 301 HMHNkklkyytGNYDQ 316
Cdd:PRK10851 209 VMSQ-------GNIEQ 217
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
204-290 |
6.38e-08 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 55.12 E-value: 6.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 204 DADKAEMRAS--RILHGLGFTPAMQRKKlKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDL----DACVWLEEELKT 277
Cdd:TIGR02142 102 RARPSERRISfeRVIELLGIGHLLGRLP-GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDprkyEILPYLERLHAE 180
|
90
....*....|...
gi 564345351 278 FKRILVLVSHSQD 290
Cdd:TIGR02142 181 FGIPILYVSHSLQ 193
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
400-622 |
6.47e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 54.63 E-value: 6.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPCIY---NNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGM-----------IRKHSHVK 465
Cdd:PRK13645 7 IILDNVSYTYAKKTPFEFkalNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQtivgdyaipanLKKIKEVK 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 466 -----IGRYHQHLQEQL-------DLDLSPL---EYMMKCYPEIKEKEEMRKIIGRYGltgkqQVSPIRnLSDGQKCRVC 530
Cdd:PRK13645 87 rlrkeIGLVFQFPEYQLfqetiekDIAFGPVnlgENKQEAYKKVPELLKLVQLPEDYV-----KRSPFE-LSGGQKRRVA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 531 LAWLAWQNPHMLFLDEPTNHLDIETIDalaDAINEFE-------GGMMLVSHDFRLIQQVAQEIWVC-EKQTITKW-PGD 601
Cdd:PRK13645 161 LAGIIAMDGNTLVLDEPTGGLDPKGEE---DFINLFErlnkeykKRIIMVTHNMDQVLRIADEVIVMhEGKVISIGsPFE 237
|
250 260
....*....|....*....|.
gi 564345351 602 ILAYKEhLKSKLVDEEPQLTK 622
Cdd:PRK13645 238 IFSNQE-LLTKIEIDPPKLYQ 257
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
200-307 |
7.98e-08 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 53.52 E-value: 7.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 200 LEELDADKAEM--RASRILH--GLGftpamqrKKLKDF----SGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACvwl 271
Cdd:COG2884 104 LRVTGKSRKEIrrRVREVLDlvGLS-------DKAKALphelSGGEQQRVAIARALVNRPELLLADEPTGNLDPETS--- 173
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 564345351 272 EEELKTFKRI------LVLVSHSQDFLNGVCTNIIHMHNKKL 307
Cdd:COG2884 174 WEIMELLEEInrrgttVLIATHDLELVDRMPKRVLELEDGRL 215
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
416-575 |
8.60e-08 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 53.42 E-value: 8.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 416 IYNNLEFGIDLDTRVALVGPNGAGKST--LLKLLTGELLPTDGMIRKhshvkigryhqhLQEQLDLDLSPLEymmkCYPE 493
Cdd:COG2401 45 VLRDLNLEIEPGEIVLIVGASGSGKSTllRLLAGALKGTPVAGCVDV------------PDNQFGREASLID----AIGR 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 494 IKEKEEMRKIIGRYGLTGKQQ-VSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALA----DAINEFEG 568
Cdd:COG2401 109 KGDFKDAVELLNAVGLSDAVLwLRRFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQTAKRVArnlqKLARRAGI 188
|
....*..
gi 564345351 569 GMMLVSH 575
Cdd:COG2401 189 TLVVATH 195
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
423-583 |
1.01e-07 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 52.53 E-value: 1.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 423 GIDLDTR----VALVGPNGAGKSTLLKLltgellptdgmIRKHSHVKIGRYHQHLQEQLDLDLSPLE------YMMKCYP 492
Cdd:cd03217 18 GVNLTIKkgevHALMGPNGSGKSTLAKT-----------IMGHPKYEVTEGEILFKGEDITDLPPEErarlgiFLAFQYP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 493 E----IKEKEEMRKIigRYGLTGkqqvspirnlsdGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEF-- 566
Cdd:cd03217 87 PeipgVKNADFLRYV--NEGFSG------------GEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLre 152
|
170
....*....|....*...
gi 564345351 567 EG-GMMLVSHDFRLIQQV 583
Cdd:cd03217 153 EGkSVLIITHYQRLLDYI 170
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
94-264 |
1.01e-07 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 53.36 E-value: 1.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKS----MLLSAVGKREVPIP-EHIDIYHLtremppsdktPLQcvme 168
Cdd:PRK10895 8 NLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTttfyMVVGIVPRDAGNIIiDDEDISLL----------PLH---- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 169 vdtERAM-----LEREA---ERLAHEDaeceKLMELYERLEELDADKAEMRASRILHGlgFTPAMQRKKL-KDFSGGWRM 239
Cdd:PRK10895 74 ---ARARrgigyLPQEAsifRRLSVYD----NLMAVLQIRDDLSAEQREDRANELMEE--FHIEHLRDSMgQSLSGGERR 144
|
170 180
....*....|....*....|....*
gi 564345351 240 RVALARALFIRPFMLLLDEPTNHLD 264
Cdd:PRK10895 145 RVEIARALAANPKFILLDEPFAGVD 169
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
396-611 |
1.04e-07 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 53.70 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 396 PPPVIMVQNVSFKYTkDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMI----------RK---HS 462
Cdd:PRK13636 2 EDYILKVEELNYNYS-DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIlfdgkpidysRKglmKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 463 HVKIGRYHQHLQEQL-------DLDLSPLEYMMkcyPEIKEKEEMRKIIGRYGltgkqqVSPIRN-----LSDGQKCRVC 530
Cdd:PRK13636 81 RESVGMVFQDPDNQLfsasvyqDVSFGAVNLKL---PEDEVRKRVDNALKRTG------IEHLKDkpthcLSFGQKKRVA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 531 LAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGGM----MLVSHDFRLIQQVAQEIWVCEKQTIT--KWPGDILA 604
Cdd:PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELgltiIIATHDIDIVPLYCDNVFVMKEGRVIlqGNPKEVFA 231
|
....*..
gi 564345351 605 YKEHLKS 611
Cdd:PRK13636 232 EKEMLRK 238
|
|
| F420-0_ABC_ATP |
TIGR03873 |
proposed F420-0 ABC transporter, ATP-binding protein; This small clade of ABC-type transporter ... |
431-589 |
1.24e-07 |
|
proposed F420-0 ABC transporter, ATP-binding protein; This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Pssm-ID: 163585 [Multi-domain] Cd Length: 256 Bit Score: 53.28 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 431 ALVGPNGAGKSTLLKLLTGELLPTDG-----------MIRKHSHVKIGRYHQHLQEQLDLD------LSPLEYMMKCYPE 493
Cdd:TIGR03873 31 GLLGPNGSGKSTLLRLLAGALRPDAGtvdlagvdlhgLSRRARARRVALVEQDSDTAVPLTvrdvvaLGRIPHRSLWAGD 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 494 IKEKEEM-RKIIGRYGLTGKQQVSpIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEF--EGGM 570
Cdd:TIGR03873 111 SPHDAAVvDRALARTELSHLADRD-MSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELaaTGVT 189
|
170 180
....*....|....*....|
gi 564345351 571 MLVS-HDFRLIQQVAQEIWV 589
Cdd:TIGR03873 190 VVAAlHDLNLAASYCDHVVV 209
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
398-585 |
1.24e-07 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 53.48 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 398 PVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHV-----------KI 466
Cdd:PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVlseetvwdvrrQV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 467 GRYHQHLQEQL-------DLDLS------PLEYMMkcypeikekEEMRKIIGRYGLTGKQQVSPIRnLSDGQKCRVCLAW 533
Cdd:PRK13635 84 GMVFQNPDNQFvgatvqdDVAFGlenigvPREEMV---------ERVDQALRQVGMEDFLNREPHR-LSGGQKQRVAIAG 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564345351 534 LAWQNPHMLFLDEPTNHLD-------IETIDALADainefEGGMMLVS--HDfrlIQQVAQ 585
Cdd:PRK13635 154 VLALQPDIIILDEATSMLDprgrrevLETVRQLKE-----QKGITVLSitHD---LDEAAQ 206
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
91-301 |
1.32e-07 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 53.03 E-value: 1.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 91 HIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVpipehidiYHLTR-EMPPSDKTPLQcvMEV 169
Cdd:TIGR01978 2 KIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPS--------YEVTSgTILFKGQDLLE--LEP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 170 DtERA--------------------MLEREAERlAHEDAECEKLMELYERLEELDadkaEMRASrilhgLGFTPAMQRKK 229
Cdd:TIGR01978 72 D-ERAraglflafqypeeipgvsnlEFLRSALN-ARRSARGEEPLDLLDFEKLLK----EKLAL-----LDMDEEFLNRS 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564345351 230 LKD-FSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDA------CVwleEELKTFKRILVLVSHSQDFLNGVCTNIIH 301
Cdd:TIGR01978 141 VNEgFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDAlkivaeGI---NRLREPDRSFLIITHYQRLLNYIKPDYVH 216
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
399-592 |
1.39e-07 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 52.97 E-value: 1.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 399 VIMVQNVSFKYTKDGPCIY--NNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMI---------------RKH 461
Cdd:cd03258 1 MIELKNVSKVFGDTGGKVTalKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVlvdgtdltllsgkelRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 462 SHvKIGRYHQHLQ--------EQLDLdlsPLEYMMKCYPEIKEK-EEMRKIIGrygLTGKQQVSPiRNLSDGQKCRVCLA 532
Cdd:cd03258 81 RR-RIGMIFQHFNllssrtvfENVAL---PLEIAGVPKAEIEERvLELLELVG---LEDKADAYP-AQLSGGQKQRVGIA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564345351 533 WLAWQNPHMLFLDEPTNHLDIET---IDALADAIN-EFEGGMMLVSHDFRLIQQVAQEIWVCEK 592
Cdd:cd03258 153 RALANNPKVLLCDEATSALDPETtqsILALLRDINrELGLTIVLITHEMEVVKRICDRVAVMEK 216
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
430-588 |
1.42e-07 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 53.01 E-value: 1.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 430 VALVGPNGAGKSTlLKLLTGELLPTDGMIR-------KHSHVKIGRYHQHLQEQ------------LDLDLSPleymmKC 490
Cdd:PRK03695 25 LHLVGPNGAGKST-LLARMAGLLPGSGSIQfagqpleAWSAAELARHRAYLSQQqtppfampvfqyLTLHQPD-----KT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 491 YPEIKEKeEMRKIIGRYGLTGKQQvSPIRNLSDGQKCRVCLAWLAWQ-----NPH--MLFLDEPTNHLDIETIDALADAI 563
Cdd:PRK03695 99 RTEAVAS-ALNEVAEALGLDDKLG-RSVNQLSGGEWQRVRLAAVVLQvwpdiNPAgqLLLLDEPMNSLDVAQQAALDRLL 176
|
170 180
....*....|....*....|....*...
gi 564345351 564 NEF--EGGMMLVS-HDFRLIQQVAQEIW 588
Cdd:PRK03695 177 SELcqQGIAVVMSsHDLNHTLRHADRVW 204
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
419-575 |
1.48e-07 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 52.11 E-value: 1.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 419 NLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHShVKIGR----YHQHL-----QEQLDLDLSPLE---- 485
Cdd:PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQG-EPIRRqrdeYHQDLlylghQPGIKTELTALEnlrf 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 486 --YMMKCYPEikekEEMRKIIGRYGLTGKQQVsPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAI 563
Cdd:PRK13538 98 yqRLHGPGDD----EALWEALAQVGLAGFEDV-PVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALL 172
|
170
....*....|....*
gi 564345351 564 NEF--EGGM-MLVSH 575
Cdd:PRK13538 173 AQHaeQGGMvILTTH 187
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
400-595 |
1.70e-07 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 53.13 E-value: 1.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGP---CIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMI-----------RKHSHV- 464
Cdd:PRK13637 3 IKIENLTHIYMEGTPfekKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIiidgvditdkkVKLSDIr 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 465 -KIGRYHQHLQEQL-------DLDLSPLEYMMKcYPEIKE--KEEMrKIIGRYGLTGKQQvSPIrNLSDGQKCRVCLAWL 534
Cdd:PRK13637 83 kKVGLVFQYPEYQLfeetiekDIAFGPINLGLS-EEEIENrvKRAM-NIVGLDYEDYKDK-SPF-ELSGGQKRRVAIAGV 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564345351 535 AWQNPHMLFLDEPTNHLDIETIDALADAI----NEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTI 595
Cdd:PRK13637 159 VAMEPKILILDEPTAGLDPKGRDEILNKIkelhKEYNMTIILVSHSMEDVAKLADRIIVMNKGKC 223
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
87-287 |
1.82e-07 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 52.81 E-value: 1.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 87 STDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDIYHLTREMPPSDKTPLQCV 166
Cdd:PRK09544 2 TSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 167 MEVDTERAMLEREAERLAhedaeceKLMELYERLEeldadkaemrASRILHGlgftpAMQRkklkdFSGGWRMRVALARA 246
Cdd:PRK09544 82 LPLTVNRFLRLRPGTKKE-------DILPALKRVQ----------AGHLIDA-----PMQK-----LSGGETQRVLLARA 134
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 564345351 247 LFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRIL----VLVSH 287
Cdd:PRK09544 135 LLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELdcavLMVSH 179
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
423-553 |
1.91e-07 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 52.85 E-value: 1.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 423 GIDLDTR----VALVGPNGAGKSTLLKLLTGELLPTDG----------------------MIRKHSH----------VKI 466
Cdd:PRK13548 20 DVSLTLRpgevVAILGPNGAGKSTLLRALSGELSPDSGevrlngrpladwspaelarrraVLPQHSSlsfpftveevVAM 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 467 GRYHqHLQEQLDLDLSPLEYMMKCypeikekeemrkiigryGLTGKQQvSPIRNLSDGQKCRVCLA------WLAWQNPH 540
Cdd:PRK13548 100 GRAP-HGLSRAEDDALVAAALAQV-----------------DLAHLAG-RDYPQLSGGEQQRVQLArvlaqlWEPDGPPR 160
|
170
....*....|...
gi 564345351 541 MLFLDEPTNHLDI 553
Cdd:PRK13548 161 WLLLDEPTSALDL 173
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
416-602 |
2.40e-07 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 52.06 E-value: 2.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 416 IYNNLEFGIDLD----TRVALVGPNGAGKSTLLKLLTGELLPTDGMI----RKHSHVKIGR-------------YHQHLQ 474
Cdd:COG3840 10 RYGDFPLRFDLTiaagERVAILGPSGAGKSTLLNLIAGFLPPDSGRIlwngQDLTALPPAErpvsmlfqennlfPHLTVA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 475 EQLDLDLSPleymmKCYPEIKEKEEMRKIIGRYGLTGKQQVSPiRNLSDGQKCRVCLA-WLAWQNPHMLfLDEPTNHLDI 553
Cdd:COG3840 90 QNIGLGLRP-----GLKLTAEQRAQVEQALERVGLAGLLDRLP-GQLSGGQRQRVALArCLVRKRPILL-LDEPFSALDP 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564345351 554 ----ETIDALADAINEFEGGMMLVSHDFRLIQQVAQE-IWVCEKQTItkWPGDI 602
Cdd:COG3840 163 alrqEMLDLVDELCRERGLTVLMVTHDPEDAARIADRvLLVADGRIA--ADGPT 214
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
400-576 |
2.57e-07 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 52.78 E-value: 2.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPCIY---NNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMI------------------ 458
Cdd:PRK13651 3 IKVKNIVKIFNKKLPTELkalDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIewifkdeknkkktkekek 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 459 ------------RKHSHVK-----IGRYHQHLQEQL-------DLDLSPLEYMMkcyPEIKEKEEMRKIIGRYGLTGKQ- 513
Cdd:PRK13651 83 vleklviqktrfKKIKKIKeirrrVGVVFQFAEYQLfeqtiekDIIFGPVSMGV---SKEEAKKRAAKYIELVGLDESYl 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564345351 514 QVSPIrNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLD----IETIDALaDAINEFEGGMMLVSHD 576
Cdd:PRK13651 160 QRSPF-ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDpqgvKEILEIF-DNLNKQGKTIILVTHD 224
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
399-595 |
2.87e-07 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 52.30 E-value: 2.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 399 VIMVQNVSFKYtKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMI----------RKHSHVK--I 466
Cdd:PRK13644 1 MIRLENVSYSY-PDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVlvsgidtgdfSKLQGIRklV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 467 GRYHQHLQEQL-------DLDLSPLEYmmkCYPEIKEKEEMRKIIGRYGLTGKQQVSPiRNLSDGQKCRVCLAWLAWQNP 539
Cdd:PRK13644 80 GIVFQNPETQFvgrtveeDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-KTLSGGQGQCVALAGILTMEP 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564345351 540 HMLFLDEPTNHLDIETIDALADAINEF-EGGMMLV--SHDFRLIqQVAQEIWVCEKQTI 595
Cdd:PRK13644 156 ECLIFDEVTSMLDPDSGIAVLERIKKLhEKGKTIVyiTHNLEEL-HDADRIIVMDRGKI 213
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
102-265 |
2.97e-07 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 52.38 E-value: 2.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 102 QELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHI-----DIYHLTREMPPSDKTPLQCVME-----VDT 171
Cdd:PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVswrgePLAKLNRAQRKAFRRDIQMVFQdsisaVNP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 172 ERAMLEREAERLAHedaeceklmelyerLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRP 251
Cdd:PRK10419 105 RKTVREIIREPLRH--------------LLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEP 170
|
170
....*....|....
gi 564345351 252 FMLLLDEPTNHLDL 265
Cdd:PRK10419 171 KLLILDEAVSNLDL 184
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
390-552 |
2.97e-07 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 52.91 E-value: 2.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 390 PPCGKIPPPVIMVQNVSFKYtkDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR---------- 459
Cdd:PRK13536 32 SIPGSMSTVAIDLAGVSKSY--GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITvlgvpvpara 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 460 KHSHVKIGRYHQHlqEQLDLDLSPLE----YMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLA 535
Cdd:PRK13536 110 RLARARIGVVPQF--DNLDLEFTVREnllvFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARAL 187
|
170
....*....|....*..
gi 564345351 536 WQNPHMLFLDEPTNHLD 552
Cdd:PRK13536 188 INDPQLLILDEPTTGLD 204
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
90-290 |
3.10e-07 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 51.49 E-value: 3.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPipEHIDIYHLTREM---PPSDKtplqcv 166
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVtdlPPKDR------ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 167 mevdtERAMLEREAERLAHedaeceklMELYE------RLEELDADKAEMRASRILHGLGFTPAMQRKKlKDFSGGWRMR 240
Cdd:cd03301 73 -----DIAMVFQNYALYPH--------MTVYDniafglKLRKVPKDEIDERVREVAELLQIEHLLDRKP-KQLSGGQRQR 138
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564345351 241 VALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRIL----VLVSHSQD 290
Cdd:cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLgtttIYVTHDQV 192
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
99-287 |
3.15e-07 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 51.08 E-value: 3.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 99 FHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAV---------------GKREVPIPEHIdiyHLTREMPpsdKTPL 163
Cdd:NF040873 2 YGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLagvlrptsgtvrragGARVAYVPQRS---EVPDSLP---LTVR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 164 QCVMevdteramLEREAERlahedaeceklmELYERLEELDadkaEMRASRILHGLGFTpAMQRKKLKDFSGGWRMRVAL 243
Cdd:NF040873 76 DLVA--------MGRWARR------------GLWRRLTRDD----RAAVDDALERVGLA-DLAGRQLGELSGGQRQRALL 130
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 564345351 244 ARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTF---KRILVLVSH 287
Cdd:NF040873 131 AQGLAQEADLLLLDEPTTGLDAESRERIIALLAEEharGATVVVVTH 177
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
103-290 |
4.17e-07 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 52.09 E-value: 4.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 103 ELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDIYHLTREMPPSDKTplqcVMEVDTERAMLEREAER 182
Cdd:PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKY----IRPVRKRIGMVFQFPES 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 183 LAHEDAeCEKLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNH 262
Cdd:PRK13646 97 QLFEDT-VEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG 175
|
170 180 190
....*....|....*....|....*....|..
gi 564345351 263 LDLDACVWLEEELKTFK----RILVLVSHSQD 290
Cdd:PRK13646 176 LDPQSKRQVMRLLKSLQtdenKTIILVSHDMN 207
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
91-287 |
4.30e-07 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 50.94 E-value: 4.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 91 HIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAV-----------------GKR--EVPI-PEHIDIY- 149
Cdd:COG4136 3 SLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIagtlspafsasgevllnGRRltALPAeQRRIGILf 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 150 -------HLTRE------MPPSDKtplqcvmevdteramleREAERLAHEDAeceklmelyerLEELDadkaemrasriL 216
Cdd:COG4136 83 qddllfpHLSVGenlafaLPPTIG-----------------RAQRRARVEQA-----------LEEAG-----------L 123
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564345351 217 HGLGF-TPAmqrkklkDFSGGWRMRVALARALFIRPFMLLLDEPTNHLD--LDACV--WLEEELKTFKRILVLVSH 287
Cdd:COG4136 124 AGFADrDPA-------TLSGGQRARVALLRALLAEPRALLLDEPFSKLDaaLRAQFreFVFEQIRQRGIPALLVTH 192
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
104-264 |
4.95e-07 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 51.12 E-value: 4.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 104 LLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKRevpIPEHIDIYH--LTREMPPSDKTPLQCVMEVDTERAMLE---- 177
Cdd:cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR---VEGGGTTSGqiLFNGQPRKPDQFQKCVAYVRQDDILLPgltv 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 178 REAERLAhedAECeklmelyeRLEEL--DADKAEMRASRILHGLGFTPAmQRKKLKDFSGGWRMRVALARALFIRPFMLL 255
Cdd:cd03234 99 RETLTYT---AIL--------RLPRKssDAIRKKRVEDVLLRDLALTRI-GGNLVKGISGGERRRVSIAVQLLWDPKVLI 166
|
....*....
gi 564345351 256 LDEPTNHLD 264
Cdd:cd03234 167 LDEPTSGLD 175
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
205-290 |
4.96e-07 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 52.03 E-value: 4.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 205 ADKAEMRAS--RILHGLGFTPAMQRK--KLkdfSGGWRMRVALARALFIRPFMLLLDEPTNHLD-------LDacvWLE- 272
Cdd:COG4148 105 APRAERRISfdEVVELLGIGHLLDRRpaTL---SGGERQRVAIGRALLSSPRLLLMDEPLAALDlarkaeiLP---YLEr 178
|
90 100
....*....|....*....|.
gi 564345351 273 --EELktfkRILVL-VSHSQD 290
Cdd:COG4148 179 lrDEL----DIPILyVSHSLD 195
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
402-576 |
4.99e-07 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 50.98 E-value: 4.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 402 VQNVSFKYTKDGpcIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMI----RKHSHVKIGR--------- 468
Cdd:cd03259 3 LKGLSKTYGSVR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIlidgRDVTGVPPERrnigmvfqd 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 469 Y----HQHLQEQLDLDLSpleymMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPiRNLSDGQKCRVCLA-WLAwQNPHMLF 543
Cdd:cd03259 81 YalfpHLTVAENIAFGLK-----LRGVPKAEIRARVRELLELVGLEGLLNRYP-HELSGGQQQRVALArALA-REPSLLL 153
|
170 180 190
....*....|....*....|....*....|....*..
gi 564345351 544 LDEPTNHLD----IETIDALADAINEFEGGMMLVSHD 576
Cdd:cd03259 154 LDEPLSALDaklrEELREELKELQRELGITTIYVTHD 190
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
400-576 |
5.11e-07 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 50.93 E-value: 5.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYtKDGPCIYNNLEfGIDLDTR----VALVGPNGAGKSTLLKLLTGELLPTDGMIR------KHSHVKIGRY 469
Cdd:cd03293 1 LEVRNVSKTY-GGGGGAVTALE-DISLSVEegefVALVGPSGCGKSTLLRIIAGLERPTSGEVLvdgepvTGPGPDRGYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 470 HQH--------LQEQLDLdlsPLEymMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPiRNLSDGQKCRVCLA-WLAwQNPH 540
Cdd:cd03293 79 FQQdallpwltVLDNVAL---GLE--LQGVPKAEARERAEELLELVGLSGFENAYP-HQLSGGMRQRVALArALA-VDPD 151
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 564345351 541 MLFLDEPTNHLDIET----IDALADAINEFEGGMMLVSHD 576
Cdd:cd03293 152 VLLLDEPFSALDALTreqlQEELLDIWRETGKTVLLVTHD 191
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
105-275 |
5.24e-07 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 50.93 E-value: 5.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 105 LSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPipEHIDIYHLTREM--PPSDKtplqcvMEVDTERAMLE----R 178
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQItePGPDR------MVVFQNYSLLPwltvR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 179 EAERLAHEDAEceklmelyerleeLDADKAEMRA--SRILHGLGFTPAmQRKKLKDFSGGWRMRVALARALFIRPFMLLL 256
Cdd:TIGR01184 73 ENIALAVDRVL-------------PDLSKSERRAivEEHIALVGLTEA-ADKRPGQLSGGMKQRVAIARALSIRPKVLLL 138
|
170
....*....|....*....
gi 564345351 257 DEPTNHLDLDACVWLEEEL 275
Cdd:TIGR01184 139 DEPFGALDALTRGNLQEEL 157
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
400-589 |
5.38e-07 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 50.96 E-value: 5.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYtkDGPCIYNnlefGIDLDTR----VALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHvKIGRYHQHLQE 475
Cdd:cd03261 1 IELRGLTKSF--GGRTVLK----GVDLDVRrgeiLAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGE-DISGLSEAELY 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 476 QLDL-------------DLS-------PL-EYMMKCYPEIKEKEEMRkiIGRYGLTGKQQVSPiRNLSDGQKCRVCLA-W 533
Cdd:cd03261 74 RLRRrmgmlfqsgalfdSLTvfenvafPLrEHTRLSEEEIREIVLEK--LEAVGLRGAEDLYP-AELSGGMKKRVALArA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 534 LAwQNPHMLFLDEPTNHLDIETIDALADAINEF--EGGM--MLVSHDFRLIQQVAQEIWV 589
Cdd:cd03261 151 LA-LDPELLLYDEPTAGLDPIASGVIDDLIRSLkkELGLtsIMVTHDLDTAFAIADRIAV 209
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
398-576 |
5.39e-07 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 52.75 E-value: 5.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 398 PVIMVQNVSFKYtKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGmirkhsHVKIGRYHQHLQEQL 477
Cdd:TIGR02868 333 PTLELRDLSAGY-PGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQG------EVTLDGVPVSSLDQD 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 478 DL--------------DLSPLEYMMKCYPEIKEkEEMRKIIGRYGLTgkqqvSPIRNLSD---------------GQKCR 528
Cdd:TIGR02868 406 EVrrrvsvcaqdahlfDTTVRENLRLARPDATD-EELWAALERVGLA-----DWLRALPDgldtvlgeggarlsgGERQR 479
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564345351 529 VCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGG--MMLVSHD 576
Cdd:TIGR02868 480 LALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGrtVVLITHH 529
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
225-289 |
6.25e-07 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 51.87 E-value: 6.25e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564345351 225 MQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRIL----VLVSHSQ 289
Cdd:PRK09452 137 FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLgitfVFVTHDQ 205
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
430-589 |
6.35e-07 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 51.36 E-value: 6.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 430 VALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDlDLSPLEYMMKC--YPEIKEKEEMRKIIgRY 507
Cdd:PRK13546 53 IGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLT-GIENIEFKMLCmgFKRKEIKAMTPKII-EF 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 508 GLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGG---MMLVSHDFRLIQQVA 584
Cdd:PRK13546 131 SELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQnktIFFVSHNLGQVRQFC 210
|
....*.
gi 564345351 585 QEI-WV 589
Cdd:PRK13546 211 TKIaWI 216
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
94-302 |
6.40e-07 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 51.14 E-value: 6.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHI--DIYHLTREMPPsdktplqcvmEVDT 171
Cdd:PRK10253 12 QLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVwlDGEHIQHYASK----------EVAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 172 ERAMLEREA---------ERLAHEDAECEKLMELYeRLEELDADKAEMRASRILHglgftpaMQRKKLKDFSGGWRMRVA 242
Cdd:PRK10253 82 RIGLLAQNAttpgditvqELVARGRYPHQPLFTRW-RKEDEEAVTKAMQATGITH-------LADQSVDTLSGGQRQRAW 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564345351 243 LARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKR----ILVLVSHSqdfLNGVCTNIIHM 302
Cdd:PRK10253 154 IAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRekgyTLAAVLHD---LNQACRYASHL 214
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
423-589 |
7.05e-07 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 50.88 E-value: 7.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 423 GIDLDTR----VALVGPNGAGKSTLLKLLTGELLPTDGMIR----------------------KHSH----------VKI 466
Cdd:COG4559 19 DVSLTLRpgelTAIIGPNGAGKSTLLKLLTGELTPSSGEVRlngrplaawspwelarrravlpQHSSlafpftveevVAL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 467 GRYHQHLQEQLDLDLsPLEYMMKCypeikekeemrkiigryGLTGKQQvspiRN---LSDGQKCRVCLAW-LA--WQNPH 540
Cdd:COG4559 99 GRAPHGSSAAQDRQI-VREALALV-----------------GLAHLAG----RSyqtLSGGEQQRVQLARvLAqlWEPVD 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 541 M----LFLDEPTNHLDI-------ETIDALADAinefEGGMMLVSHDFRLIQQVAQEIWV 589
Cdd:COG4559 157 GgprwLFLDEPTSALDLahqhavlRLARQLARR----GGGVVAVLHDLNLAAQYADRILL 212
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
397-579 |
7.31e-07 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 50.43 E-value: 7.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 397 PPVIMVQNVSFKYTKDGPCIY--NNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMI---------------- 458
Cdd:COG1136 2 SPLLELRNLTKSYGTGEGEVTalRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVlidgqdisslserela 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 459 --RKHshvKIG----RYH--QHL--QEQLDLdlsPLEYMMKCYPEIKEKeeMRKIIGRYGLTGKQQVSPiRNLSDGQKCR 528
Cdd:COG1136 82 rlRRR---HIGfvfqFFNllPELtaLENVAL---PLLLAGVSRKERRER--ARELLERVGLGDRLDHRP-SQLSGGQQQR 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 564345351 529 VCLA-WLAwQNPHMLFLDEPTNHLDIET----IDALADAINEFEGGMMLVSHDFRL 579
Cdd:COG1136 153 VAIArALV-NRPKLILADEPTGNLDSKTgeevLELLRELNRELGTTIVMVTHDPEL 207
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
90-264 |
8.03e-07 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 50.38 E-value: 8.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSA-------------VGKREVPIPEHiDIYHLTREM- 155
Cdd:COG1126 2 IEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCinlleepdsgtitVDGEDLTDSKK-DINKLRRKVg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 156 ---------PpsDKTPLQCVME----VdteRAMLEREAERLAhedaeceklMELYERLEeLdADKAEMRASRIlhglgft 222
Cdd:COG1126 81 mvfqqfnlfP--HLTVLENVTLapikV---KKMSKAEAEERA---------MELLERVG-L-ADKADAYPAQL------- 137
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 564345351 223 pamqrkklkdfSGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:COG1126 138 -----------SGGQQQRVAIARALAMEPKVMLFDEPTSALD 168
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
92-266 |
8.37e-07 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 51.77 E-value: 8.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 92 IINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAV------GKREVPIpEHIDIYHLtremppSDKTPLQC 165
Cdd:PRK09536 6 VSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAIngtltpTAGTVLV-AGDDVEAL------SARAASRR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 166 VMEVDTERAmlereaerLAHE-DAECEKLMELYERLEELD-ADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVAL 243
Cdd:PRK09536 79 VASVPQDTS--------LSFEfDVRQVVEMGRTPHRSRFDtWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLL 150
|
170 180
....*....|....*....|...
gi 564345351 244 ARALFIRPFMLLLDEPTNHLDLD 266
Cdd:PRK09536 151 ARALAQATPVLLLDEPTASLDIN 173
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
424-593 |
9.97e-07 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 49.91 E-value: 9.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 424 IDLDTRVAL-VGPNGAGKST-----------LLKLLTGELLPTDGMIRKHShvKIGRYHQHLQEQLDLD------LSPLE 485
Cdd:cd03240 18 IEFFSPLTLiVGQNGAGKTTiiealkyaltgELPPNSKGGAHDPKLIREGE--VRAQVKLAFENANGKKytitrsLAILE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 486 YMMKCYpeikeKEEMRKIIGRygltgkqqvsPIRNLSDGQKCRVCLAW-LAWQ-----NPHMLFLDEPTNHLDIETID-A 558
Cdd:cd03240 96 NVIFCH-----QGESNWPLLD----------MRGRCSGGEKVLASLIIrLALAetfgsNCGILALDEPTTNLDEENIEeS 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 564345351 559 LADAINEFEGG----MMLVSHDFRLIqQVAQEIWVCEKQ 593
Cdd:cd03240 161 LAEIIEERKSQknfqLIVITHDEELV-DAADHIYRVEKD 198
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
407-607 |
1.15e-06 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 50.39 E-value: 1.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 407 FKYtKDGPCIYN-NLEFGIDLDTrvALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHV-------------KIGRYHQH 472
Cdd:PRK13638 9 FRY-QDEPVLKGlNLDFSLSPVT--GLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPldyskrgllalrqQVATVFQD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 473 LQEQL---DLDlSPLEYMMKCYpEIKEKEEMRKIIGRYGLTGKQQV--SPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEP 547
Cdd:PRK13638 86 PEQQIfytDID-SDIAFSLRNL-GVPEAEITRRVDEALTLVDAQHFrhQPIQCLSHGQKKRVAIAGALVLQARYLLLDEP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564345351 548 TNHLD-------IETIDALADAINEfeggMMLVSHDFRLIQQVAQEIWV-CEKQTITKW-PGDILAYKE 607
Cdd:PRK13638 164 TAGLDpagrtqmIAIIRRIVAQGNH----VIISSHDIDLIYEISDAVYVlRQGQILTHGaPGEVFACTE 228
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
234-264 |
1.27e-06 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 50.06 E-value: 1.27e-06
10 20 30
....*....|....*....|....*....|.
gi 564345351 234 SGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:PRK11247 135 SGGQKQRVALARALIHRPGLLLLDEPLGALD 165
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
90-307 |
1.34e-06 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 49.89 E-value: 1.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQ----ELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVP----IpeHIDIYHLTReMPPSDKT 161
Cdd:cd03258 2 IELKNVSKVFGDTggkvTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPtsgsV--LVDGTDLTL-LSGKELR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 162 PLQCVM-------EVDTERAMLEREAE--RLAHEDAEceklmELYERLEELD-----ADKAEMRASRIlhglgftpamqr 227
Cdd:cd03258 79 KARRRIgmifqhfNLLSSRTVFENVALplEIAGVPKA-----EIEERVLELLelvglEDKADAYPAQL------------ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 228 kklkdfSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACvwlEEELKTFKRI-------LVLVSHSQDFLNGVCTNII 300
Cdd:cd03258 142 ------SGGQKQRVGIARALANNPKVLLCDEATSALDPETT---QSILALLRDInrelgltIVLITHEMEVVKRICDRVA 212
|
....*..
gi 564345351 301 HMHNKKL 307
Cdd:cd03258 213 VMEKGEV 219
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
400-576 |
1.40e-06 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 50.08 E-value: 1.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTkDGPCIYN-NLEF---GIdldtrVALVGPNGAGKSTLLKLLTGELLPTDGMI----------------- 458
Cdd:COG4604 2 IEIKNVSKRYG-GKVVLDDvSLTIpkgGI-----TALIGPNGAGKSTLLSMISRLLPPDSGEVlvdgldvattpsrelak 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 459 -----RKHSHVKI----------GRY-----------HQHLQEQLD-LDLSPLEymmkcypeikekeemrkiiGRYgltg 511
Cdd:COG4604 76 rlailRQENHINSrltvrelvafGRFpyskgrltaedREIIDEAIAyLDLEDLA-------------------DRY---- 132
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 512 kqqvspIRNLSDGQKCRVCLAW-LAwQNPHMLFLDEPTNHLDI----ETIDALADAINEFEGGMMLVSHD 576
Cdd:COG4604 133 ------LDELSGGQRQRAFIAMvLA-QDTDYVLLDEPLNNLDMkhsvQMMKLLRRLADELGKTVVIVLHD 195
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
232-306 |
1.40e-06 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 50.43 E-value: 1.40e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564345351 232 DFSGGWRMRVALARALFIRPFMLLLDEPTNHLD---LDACVWLEEEL-KTFKRILVLVSHSQDFLNGVCTNIIHMHNKK 306
Cdd:PRK13637 144 ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDpkgRDEILNKIKELhKEYNMTIILVSHSMEDVAKLADRIIVMNKGK 222
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
105-310 |
1.54e-06 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 49.45 E-value: 1.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 105 LSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKrevpipehidIYHLTREmppsdktplqcvmEVDTER---AMLEreae 181
Cdd:cd03220 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG----------IYPPDSG-------------TVTVRGrvsSLLG---- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 182 rLAHE-DAECEKLMELYERLEELDADKAEMRAsRILHGLGFT--PAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDE 258
Cdd:cd03220 91 -LGGGfNPELTGRENIYLNGRLLGLSRKEIDE-KIDEIIEFSelGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564345351 259 PTNHLDL---DACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYY 310
Cdd:cd03220 169 VLAVGDAafqEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFD 223
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
205-289 |
1.57e-06 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 50.80 E-value: 1.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 205 ADKAEMR-----ASRILHgLGftpAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEEL---- 275
Cdd:PRK11000 105 AKKEEINqrvnqVAEVLQ-LA---HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIsrlh 180
|
90
....*....|....
gi 564345351 276 KTFKRILVLVSHSQ 289
Cdd:PRK11000 181 KRLGRTMIYVTHDQ 194
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
400-553 |
1.57e-06 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 50.01 E-value: 1.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGpcIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGM-------IRKHSHVKIGRYHQH 472
Cdd:PRK11231 3 LRTENLTVGYGTKR--ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTvflgdkpISMLSSRQLARRLAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 473 LQEQLdldLSPleymmkcypeikEKEEMRKII-----------GRYGLTGKQQVS--------------PIRNLSDGQKC 527
Cdd:PRK11231 81 LPQHH---LTP------------EGITVRELVaygrspwlslwGRLSAEDNARVNqameqtrinhladrRLTDLSGGQRQ 145
|
170 180
....*....|....*....|....*.
gi 564345351 528 RVCLAWLAWQNPHMLFLDEPTNHLDI 553
Cdd:PRK11231 146 RAFLAMVLAQDTPVVLLDEPTTYLDI 171
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
92-307 |
1.58e-06 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 49.06 E-value: 1.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 92 IINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDIY---HLTREMPPsdktplqcvme 168
Cdd:cd03217 3 IKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILfkgEDITDLPP----------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 169 vdTERAmlereaerlahedaeceklmelyerleeldadkaemrasrilhGLGFTPAMQRK------KLKD--------FS 234
Cdd:cd03217 72 --EERA-------------------------------------------RLGIFLAFQYPpeipgvKNADflryvnegFS 106
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564345351 235 GGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRI---LVLVSHSQDFLNGVCTNIIH-MHNKKL 307
Cdd:cd03217 107 GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEgksVLIITHYQRLLDYIKPDRVHvLYDGRI 183
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
46-287 |
1.67e-06 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 50.60 E-value: 1.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 46 TNGRETTGDGEVDLLTKELEDFEMKKAAARAVTGVlashpNSTDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNG 125
Cdd:PRK13536 3 TRAVAEEAPRRLELSPIERKHQGISEAKASIPGSM-----STVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 126 IGKSMllsavgkrevpipehidIYHLTREMPPSDKTPLQCVMEVDTERAMLER-------EAERLAHEDAECEKLMeLYE 198
Cdd:PRK13536 78 AGKST-----------------IARMILGMTSPDAGKITVLGVPVPARARLARarigvvpQFDNLDLEFTVRENLL-VFG 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 199 RLEELDADKAEMRASRILHglgFTpAMQRK---KLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEEL 275
Cdd:PRK13536 140 RYFGMSTREIEAVIPSLLE---FA-RLESKadaRVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERL 215
|
250
....*....|....*.
gi 564345351 276 KTF----KRILvLVSH 287
Cdd:PRK13536 216 RSLlargKTIL-LTTH 230
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
420-587 |
1.81e-06 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 49.29 E-value: 1.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 420 LEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIrkhshvkigryhqhLQEQLDLDLSPLEYM---------MKC 490
Cdd:cd03266 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFA--------------TVDGFDVVKEPAEARrrlgfvsdsTGL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 491 YPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSD-----------------GQKCRVCLAWLAWQNPHMLFLDEPTNHLDI 553
Cdd:cd03266 90 YDRLTARENLEYFAGLYGLKGDELTARLEELADrlgmeelldrrvggfstGMRQKVAIARALVHDPPVLLLDEPTTGLDV 169
|
170 180 190
....*....|....*....|....*....|....*..
gi 564345351 554 ETIDALADAINEF--EGGMMLVS-HDFRLIQQVAQEI 587
Cdd:cd03266 170 MATRALREFIRQLraLGKCILFStHIMQEVERLCDRV 206
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
200-290 |
1.92e-06 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 49.61 E-value: 1.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 200 LEELDADKAEMRASRILHGLGFTPAMQRKKLKD-FSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTF 278
Cdd:cd03295 102 LLKWPKEKIRERADELLALVGLDPAEFADRYPHeLSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRL 181
|
90
....*....|....*.
gi 564345351 279 KRIL----VLVSHSQD 290
Cdd:cd03295 182 QQELgktiVFVTHDID 197
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
227-288 |
2.04e-06 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 49.46 E-value: 2.04e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564345351 227 RKKLKDF----SGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKR--ILVLVSHS 288
Cdd:PRK14267 140 KDRLNDYpsnlSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKeyTIVLVTHS 207
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
400-552 |
2.20e-06 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 51.06 E-value: 2.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLpTDGMI---------------RKHSHV 464
Cdd:TIGR01271 1218 MDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIqidgvswnsvtlqtwRKAFGV 1296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 465 ---KIGRYHQHLQEQLDldlsPLEYMmkcypeikEKEEMRKIIGRYGLTGKQQVSPIR----------NLSDGQKCRVCL 531
Cdd:TIGR01271 1297 ipqKVFIFSGTFRKNLD----PYEQW--------SDEEIWKVAEEVGLKSVIEQFPDKldfvlvdggyVLSNGHKQLMCL 1364
|
170 180
....*....|....*....|.
gi 564345351 532 AWLAWQNPHMLFLDEPTNHLD 552
Cdd:TIGR01271 1365 ARSILSKAKILLLDEPSAHLD 1385
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
94-304 |
2.26e-06 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 49.27 E-value: 2.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAV--------------GKREVPIPEHiDIYHL-------- 151
Cdd:COG0411 9 GLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLItgfyrptsgrilfdGRDITGLPPH-RIARLgiartfqn 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 152 TREMPpsDKTPLQCVM-----------EVDTERAMLEREAERLAHEDAeceklMELYERLEeLdADKAEMRASRILHGlg 220
Cdd:COG0411 88 PRLFP--ELTVLENVLvaaharlgrglLAALLRLPRARREEREARERA-----EELLERVG-L-ADRADEPAGNLSYG-- 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 221 ftpamQRKklkdfsggwrmRVALARALFIRPFMLLLDEPT---NHLDLDACVWLEEELKTFKRI-LVLVSHSQDFLNGVC 296
Cdd:COG0411 157 -----QQR-----------RLEIARALATEPKLLLLDEPAaglNPEETEELAELIRRLRDERGItILLIEHDMDLVMGLA 220
|
....*...
gi 564345351 297 TNIIHMHN 304
Cdd:COG0411 221 DRIVVLDF 228
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
521-589 |
2.27e-06 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 49.69 E-value: 2.27e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564345351 521 LSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDI----ETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWV 589
Cdd:PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLvlqaGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMV 224
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
400-575 |
2.46e-06 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 47.92 E-value: 2.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFkYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTL--------LKLLTGELLPTDG---MIRKHSHVKIGR 468
Cdd:cd03223 1 IELENLSL-ATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLfralaglwPWGSGRIGMPEGEdllFLPQRPYLPLGT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 469 yhqhLQEQLdldlspleymmkCYPEIKEkeemrkiigrygltgkqqvspirnLSDGQKCRVCLAWLAWQNPHMLFLDEPT 548
Cdd:cd03223 80 ----LREQL------------IYPWDDV------------------------LSGGEQQRLAFARLLLHKPKFVFLDEAT 119
|
170 180
....*....|....*....|....*..
gi 564345351 549 NHLDIETIDALADAINEFEGGMMLVSH 575
Cdd:cd03223 120 SALDEESEDRLYQLLKELGITVISVGH 146
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
84-290 |
2.50e-06 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 50.59 E-value: 2.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 84 HPNSTDVHIINLSLTFHGQEL--LSDTKLELNSGRRYGLIGLNGIGKSMLLSAvgkrevpipehidiyhLTREMPPS--- 158
Cdd:PRK11160 333 AADQVSLTLNNVSFTYPDQPQpvLKGLSLQIKAGEKVALLGRTGCGKSTLLQL----------------LTRAWDPQqge 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 159 ---DKTPLQCVMEvDTERAMLE-------------REAERLAHEDAECEKLMELYER--LEELDADKAEMRA-----SRI 215
Cdd:PRK11160 397 illNGQPIADYSE-AALRQAISvvsqrvhlfsatlRDNLLLAAPNASDEALIEVLQQvgLEKLLEDDKGLNAwlgegGRQ 475
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564345351 216 LhglgftpamqrkklkdfSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDacvwleeelkTFKRIL-VLVSHSQD 290
Cdd:PRK11160 476 L-----------------SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE----------TERQILeLLAEHAQN 524
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
412-598 |
2.54e-06 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 49.28 E-value: 2.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 412 DGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHV-----------------KIGRYHQHLQ 474
Cdd:PRK14246 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVlyfgkdifqidaiklrkEVGMVFQQPN 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 475 EQLDLDL-SPLEYMMKCYpEIKEKEEMRKI-------IGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDE 546
Cdd:PRK14246 101 PFPHLSIyDNIAYPLKSH-GIKEKREIKKIveeclrkVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDE 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564345351 547 PTNHLDIETIDALADAINEF--EGGMMLVSHDFRLIQQVAQEIWVCEKQTITKW 598
Cdd:PRK14246 180 PTSMIDIVNSQAIEKLITELknEIAIVIVSHNPQQVARVADYVAFLYNGELVEW 233
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
234-308 |
2.73e-06 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 49.87 E-value: 2.73e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564345351 234 SGGWRMRVALARALFIRPFMLLLDEPTNHLDL----DACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLK 308
Cdd:PRK11144 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLprkrELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVK 208
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
393-552 |
2.81e-06 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 49.42 E-value: 2.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 393 GKIPPPVIMVQNVSFKYtkDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR----------KHS 462
Cdd:PRK13537 1 GPMSVAPIDFRNVEKRY--GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISlcgepvpsraRHA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 463 HVKIGRYHQHlqEQLDLDLSPLEYMMkcypeikekeemrkIIGRY-GLTGKQ-----------------QVSPIRNLSDG 524
Cdd:PRK13537 79 RQRVGVVPQF--DNLDPDFTVRENLL--------------VFGRYfGLSAAAaralvppllefaklenkADAKVGELSGG 142
|
170 180
....*....|....*....|....*...
gi 564345351 525 QKCRVCLAWLAWQNPHMLFLDEPTNHLD 552
Cdd:PRK13537 143 MKRRLTLARALVNDPDVLVLDEPTTGLD 170
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
91-288 |
2.85e-06 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 48.98 E-value: 2.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 91 HIINLSLTFHGQELLSDtkLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHI-----DIYHLtremPPSDKtPLqc 165
Cdd:COG3840 3 RLDDLTYRYGDFPLRFD--LTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRIlwngqDLTAL----PPAER-PV-- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 166 vmevdterAMLEREAERLAHedaeceklMELYE----------RLEELDADKAEMRASRI-LHGLGftpamQRK--KLkd 232
Cdd:COG3840 74 --------SMLFQENNLFPH--------LTVAQniglglrpglKLTAEQRAQVEQALERVgLAGLL-----DRLpgQL-- 130
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564345351 233 fSGGWRMRVALARALfIR--PfMLLLDEPTNHLD-------LDacvWLEEELKTFKRILVLVSHS 288
Cdd:COG3840 131 -SGGQRQRVALARCL-VRkrP-ILLLDEPFSALDpalrqemLD---LVDELCRERGLTVLMVTHD 189
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
90-287 |
3.43e-06 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 48.76 E-value: 3.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKRevpipehIDIYHLTR-------------EMP 156
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL-------IELYPEARvsgevyldgqdifKMD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 157 PSD-KTPLQCVMEVDT--------ERAMLEREAERLAHEDAEC-EKLMELYERLEELDADKAEMRAsrilhglgftPAMQ 226
Cdd:PRK14247 77 VIElRRRVQMVFQIPNpipnlsifENVALGLKLNRLVKSKKELqERVRWALEKAQLWDEVKDRLDA----------PAGK 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564345351 227 rkklkdFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKR--ILVLVSH 287
Cdd:PRK14247 147 ------LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKdmTIVLVTH 203
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
88-323 |
3.45e-06 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 48.86 E-value: 3.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 88 TDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSavgkrevpipehidiyHLTrEMPPSDKTPlQCVM 167
Cdd:PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLR----------------HLS-GLITGDKSA-GSHI 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 168 EV---DTERA-MLEREAERLAHEDAECEKLMELYERLEELD--------------------ADKAEMRASRILHGLGFTP 223
Cdd:PRK09984 65 ELlgrTVQREgRLARDIRKSRANTGYIFQQFNLVNRLSVLEnvligalgstpfwrtcfswfTREQKQRALQALTRVGMVH 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 224 -AMQRkkLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKR---ILVLVS-HSQDFLNGVCTN 298
Cdd:PRK09984 145 fAHQR--VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQndgITVVVTlHQVDYALRYCER 222
|
250 260
....*....|....*....|....*
gi 564345351 299 IIHMHNKKLkYYTGNYDQYVKTRLE 323
Cdd:PRK09984 223 IVALRQGHV-FYDGSSQQFDNERFD 246
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
233-287 |
3.48e-06 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 49.58 E-value: 3.48e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564345351 233 FSGGWRMRVALARALFIRPFMLLLDEPTNHLDLD--ACVW-----LEEELKTfkrILVLVSH 287
Cdd:PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSvqAQVLnlmmdLQQELGL---SYVFISH 213
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
518-561 |
4.06e-06 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 47.93 E-value: 4.06e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 564345351 518 IRNLSDGQKCRVCLAW-LAWqNPHMLFLDEPTNHLD-------IETIDALAD 561
Cdd:cd03213 109 LRGLSGGERKRVSIALeLVS-NPSLLFLDEPTSGLDsssalqvMSLLRRLAD 159
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
234-329 |
4.22e-06 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 48.17 E-value: 4.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 234 SGGWRMRVALARALFIRPFMLLLDEPTNHLDLDacvwleeelkTFKRILVLVSHSQDflNGVcTNIIHMHNKKLkyytgn 313
Cdd:cd03292 138 SGGEQQRVAIARAIVNSPTILIADEPTGNLDPD----------TTWEIMNLLKKINK--AGT-TVVVATHAKEL------ 198
|
90
....*....|....*.
gi 564345351 314 YDQYVKTRLELEENQM 329
Cdd:cd03292 199 VDTTRHRVIALERGKL 214
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
229-264 |
4.30e-06 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 47.55 E-value: 4.30e-06
10 20 30
....*....|....*....|....*....|....*.
gi 564345351 229 KLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:cd03213 108 KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
90-306 |
4.45e-06 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 48.05 E-value: 4.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVgkREVPIPEHIDIYHLTREMPPSDKTPLQCVMEv 169
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMI--LGIILPDSGEVLFDGKPLDIAARNRIGYLPE- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 170 dtERAMLEREAERlahedaecEKLMELyERLEELDADKAEMRASRILHGLGFTPaMQRKKLKDFSGGWRMRVALARALFI 249
Cdd:cd03269 78 --ERGLYPKMKVI--------DQLVYL-AQLKGLKKEEARRRIDEWLERLELSE-YANKRVEELSKGNQQKVQFIAAVIH 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 250 RPFMLLLDEPTNHLDLDACVWLEEELKTFKR---ILVLVSHSQDFLNGVCTNIIHMHNKK 306
Cdd:cd03269 146 DPELLILDEPFSGLDPVNVELLKDVIRELARagkTVILSTHQMELVEELCDRVLLLNKGR 205
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
344-442 |
4.86e-06 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 49.39 E-value: 4.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 344 NYIARFGHGSAKLARQAQSkektLQKMMASglTERVVS--DKTLSFYFPPCGKIPPPV---IMVQNVSFKYTKDGPcIYN 418
Cdd:COG1132 285 LYLLRLFGPLRQLANVLNQ----LQRALAS--AERIFEllDEPPEIPDPPGAVPLPPVrgeIEFENVSFSYPGDRP-VLK 357
|
90 100
....*....|....*....|....
gi 564345351 419 NLEFGIDLDTRVALVGPNGAGKST 442
Cdd:COG1132 358 DISLTIPPGETVALVGPSGSGKST 381
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
206-308 |
4.93e-06 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 48.86 E-value: 4.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 206 DKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDAcvwLEEELKTFKRI---- 281
Cdd:PRK13634 119 EDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG---RKEMMEMFYKLhkek 195
|
90 100 110
....*....|....*....|....*....|
gi 564345351 282 ---LVLVSHSQDFLNGVCTNIIHMHNKKLK 308
Cdd:PRK13634 196 gltTVLVTHSMEDAARYADQIVVMHKGTVF 225
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
105-290 |
5.22e-06 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 48.58 E-value: 5.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 105 LSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDIYHLT-------REMPPSDKTpLQCVMEVDTERAMLE 177
Cdd:PRK13643 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVvsstskqKEIKPVRKK-VGVVFQFPESQLFEE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 178 REAERLAHEDaecEKLMELYERLEELDADKAEMrasrilhgLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLD 257
Cdd:PRK13643 101 TVLKDVAFGP---QNFGIPKEKAEKIAAEKLEM--------VGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLD 169
|
170 180 190
....*....|....*....|....*....|....*....
gi 564345351 258 EPTNHLDLDACVwleEELKTFKRI------LVLVSHSQD 290
Cdd:PRK13643 170 EPTAGLDPKARI---EMMQLFESIhqsgqtVVLVTHLMD 205
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
431-587 |
5.67e-06 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 47.75 E-value: 5.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 431 ALVGPNGAGKSTLLKLLTGELLPTDG--MIRKHSHVK--------IGRYHQHLqeQLDLDLSPLEYM-----MKCYPEIK 495
Cdd:cd03265 30 GLLGPNGAGKTTTIKMLTTLLKPTSGraTVAGHDVVReprevrrrIGIVFQDL--SVDDELTGWENLyiharLYGVPGAE 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 496 EKEEMRKIIGRYGLTGKQQvSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEF--EGGM--M 571
Cdd:cd03265 108 RRERIDELLDFVGLLEAAD-RLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLkeEFGMtiL 186
|
170
....*....|....*.
gi 564345351 572 LVSHDFRLIQQVAQEI 587
Cdd:cd03265 187 LTTHYMEEAEQLCDRV 202
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
418-594 |
6.13e-06 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 48.06 E-value: 6.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 418 NNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTD---------------------GMIRKHSHVKIGR-------- 468
Cdd:PRK11300 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGgtillrgqhieglpghqiarmGVVRTFQHVRLFRemtvienl 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 469 ---YHQHLQEQLdldLSPLeYMMKCYPEiKEKEEMRKI---IGRYGLTgkqQVS--PIRNLSDGQKCRVCLAWLAWQNPH 540
Cdd:PRK11300 102 lvaQHQQLKTGL---FSGL-LKTPAFRR-AESEALDRAatwLERVGLL---EHAnrQAGNLAYGQQRRLEIARCMVTQPE 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 564345351 541 MLFLDEPTNHLD-IETID--ALADAI-NEFEGGMMLVSHDFRLIQQVAQEIWVCEKQT 594
Cdd:PRK11300 174 ILMLDEPAAGLNpKETKEldELIAELrNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
398-587 |
6.35e-06 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 47.89 E-value: 6.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 398 PVIMVQNVSFKYtKDGPC---IYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDG------------------ 456
Cdd:PRK11629 4 ILLQCDNLCKRY-QEGSVqtdVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGdvifngqpmsklssaaka 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 457 MIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPiRNLSDGQKCRVCLAWLAW 536
Cdd:PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP-SELSGGERQRVAIARALV 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564345351 537 QNPHMLFLDEPTNHLDIETIDALADAINEFE----GGMMLVSHDFRLIQQVAQEI 587
Cdd:PRK11629 162 NNPRLVLADEPTGNLDARNADSIFQLLGELNrlqgTAFLVVTHDLQLAKRMSRQL 216
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
199-264 |
6.56e-06 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 47.93 E-value: 6.56e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564345351 199 RLEELDADKAEMRASRILHGLGFTPAmQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:COG4525 102 RLRGVPKAERRARAEELLALVGLADF-ARRRIWQLSGGMRQRVGIARALAADPRFLLMDEPFGALD 166
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
222-326 |
8.57e-06 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 47.73 E-value: 8.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 222 TPAMQrkklkdFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKR--ILVLVSHSQDFLNGVCTNI 299
Cdd:PRK14246 149 SPASQ------LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNeiAIVIVSHNPQQVARVADYV 222
|
90 100
....*....|....*....|....*..
gi 564345351 300 IHMHNKKLKYYTGNYDQYVKTRLELEE 326
Cdd:PRK14246 223 AFLYNGELVEWGSSNEIFTSPKNELTE 249
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
400-596 |
8.83e-06 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 46.54 E-value: 8.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLltgellptdgmirkhshvkIGRYHQHLQEQLDL 479
Cdd:cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQL-------------------LTGDLKPQQGEITL 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 480 DLSPLEymmkcypeiKEKEEMRKIIGRYgltgKQQV----SPIRN-----LSDGQKCRVCLAWLAWQNPHMLFLDEPTNH 550
Cdd:cd03247 62 DGVPVS---------DLEKALSSLISVL----NQRPylfdTTLRNnlgrrFSGGERQRLALARILLQDAPIVLLDEPTVG 128
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 564345351 551 LDIETIDALADAINEF--EGGMMLVSHDFRLIQQVaQEIWVCEKQTIT 596
Cdd:cd03247 129 LDPITERQLLSLIFEVlkDKTLIWITHHLTGIEHM-DKILFLENGKII 175
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
423-596 |
9.15e-06 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 47.39 E-value: 9.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 423 GIDLDTR----VALVGPNGAGKSTLLKLLTGELLPTDG-MIRKHSHVKIGRYHQHL--QE------QLDL--DLSPLEYM 487
Cdd:PRK09493 19 NIDLNIDqgevVVIIGPSGSGKSTLLRCINKLEEITSGdLIVDGLKVNDPKVDERLirQEagmvfqQFYLfpHLTALENV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 488 MkcYPEIK----EKEEMRKI----IGRYGLTGKQQVSPiRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIE----- 554
Cdd:PRK09493 99 M--FGPLRvrgaSKEEAEKQarelLAKVGLAERAHHYP-SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPElrhev 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 564345351 555 --TIDALADainefEG-GMMLVSHDFRLIQQVAQEIWVCEKQTIT 596
Cdd:PRK09493 176 lkVMQDLAE-----EGmTMVIVTHEIGFAEKVASRLIFIDKGRIA 215
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
234-264 |
9.93e-06 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 48.18 E-value: 9.93e-06
10 20 30
....*....|....*....|....*....|.
gi 564345351 234 SGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:PRK11432 138 SGGQQQRVALARALILKPKVLLFDEPLSNLD 168
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
400-604 |
1.06e-05 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 47.30 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYtKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMI----------------RKHSH 463
Cdd:cd03295 1 IEFENVTKRY-GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIfidgedireqdpvelrRKIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 464 V--KIGRY-HQHLQEQLDLDLSPLEymmkcYPEIKEKEEMRKIIGRYGLTGKQ--QVSPiRNLSDGQKCRVCLAWLAWQN 538
Cdd:cd03295 80 ViqQIGLFpHMTVEENIALVPKLLK-----WPKEKIRERADELLALVGLDPAEfaDRYP-HELSGGQQQRVGVARALAAD 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564345351 539 PHMLFLDEPTNHLDIETIDALADAI----NEFEGGMMLVSHD----FRLiqqvAQEIWVCEKQTITKW--PGDILA 604
Cdd:cd03295 154 PPLLLMDEPFGALDPITRDQLQEEFkrlqQELGKTIVFVTHDideaFRL----ADRIAIMKNGEIVQVgtPDEILR 225
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
399-617 |
1.08e-05 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 47.49 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 399 VIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLP---------TDGMIRKHSHV----- 464
Cdd:PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPddnpnskitVDGITLTAKTVwdire 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 465 KIGRYHQHLQEQL-------DLDLSpLEYmmKCYPEIKEKEEMRKIIGRYGLTGKQQVSPiRNLSDGQKCRVCLAWLAWQ 537
Cdd:PRK13640 85 KVGIVFQNPDNQFvgatvgdDVAFG-LEN--RAVPRPEMIKIVRDVLADVGMLDYIDSEP-ANLSGGQKQRVAIAGILAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 538 NPHMLFLDEPTNHLDIE------------------TIDALADAINEFEGG-MMLVSHDFRLIQQVA-QEIWvcEKQTITK 597
Cdd:PRK13640 161 EPKIIILDESTSMLDPAgkeqilklirklkkknnlTVISITHDIDEANMAdQVLVLDDGKLLAQGSpVEIF--SKVEMLK 238
|
250 260
....*....|....*....|
gi 564345351 598 WPGDILAYKEHLKSKLVDEE 617
Cdd:PRK13640 239 EIGLDIPFVYKLKNKLKEKG 258
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
206-265 |
1.22e-05 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 47.12 E-value: 1.22e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 206 DKAEMRASRILHGLGFTPAMQRKKlKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDL 265
Cdd:PRK11629 120 AEINSRALEMLAAVGLEHRANHRP-SELSGGERQRVAIARALVNNPRLVLADEPTGNLDA 178
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
94-264 |
1.31e-05 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 47.23 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIdIYHlTREMPPSDktpLQCVMEvdTER 173
Cdd:PRK11701 11 GLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV-HYR-MRDGQLRD---LYALSE--AER 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 174 AMLEREAERLAHEDAE-------------CEKLMEL----YERLEELDAD---KAEMRASRIlhglgftpamqrkklkD- 232
Cdd:PRK11701 84 RRLLRTEWGFVHQHPRdglrmqvsaggniGERLMAVgarhYGDIRATAGDwleRVEIDAARI----------------Dd 147
|
170 180 190
....*....|....*....|....*....|....*.
gi 564345351 233 ----FSGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:PRK11701 148 lpttFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
90-288 |
1.33e-05 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 47.34 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKR-----EVPIPEHIDIYHltremppsdktplQ 164
Cdd:PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMnelesEVRVEGRVEFFN-------------Q 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 165 CVMEVDTERAMLEREAErLAHED------------AECEKLMELYERLEELDADKAEMRAS----RILHGLgftpamqRK 228
Cdd:PRK14258 75 NIYERRVNLNRLRRQVS-MVHPKpnlfpmsvydnvAYGVKIVGWRPKLEIDDIVESALKDAdlwdEIKHKI-------HK 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564345351 229 KLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFK----RILVLVSHS 288
Cdd:PRK14258 147 SALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRlrseLTMVIVSHN 210
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
400-622 |
1.35e-05 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 47.43 E-value: 1.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPCIYNNLeFGIDLDTR----VALVGPNGAGKSTLLKLLTGELLPTDGMIR---------------K 460
Cdd:PRK13649 3 INLQNVSYTYQAGTPFEGRAL-FDVNLTIEdgsyTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRvddtlitstsknkdiK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 461 HSHVKIGRYHQHLQEQL-------DLDLSPLEYmmkcypEIKEKEEMRKIIGRYGLTGKQQVSPIRN---LSDGQKCRVC 530
Cdd:PRK13649 82 QIRKKVGLVFQFPESQLfeetvlkDVAFGPQNF------GVSQEEAEALAREKLALVGISESLFEKNpfeLSGGQMRRVA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 531 LAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEF-EGGM--MLVSHDFRLIQQVAQEIWVCEKQTITK--WPGDILAY 605
Cdd:PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLhQSGMtiVLVTHLMDDVANYADFVYVLEKGKLVLsgKPKDIFQD 235
|
250
....*....|....*..
gi 564345351 606 KEHLKSKLVDeEPQLTK 622
Cdd:PRK13649 236 VDFLEEKQLG-VPKITK 251
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
101-264 |
1.36e-05 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 46.33 E-value: 1.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 101 GQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAvgkrevpipehidiyhLTREMPPSDKTPLQCVMEVDTERAMLEREA 180
Cdd:cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRI----------------LAGLSPPLAGRVLLNGGPLDFQRDSIARGL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 181 ERLAHEDAeCEKLMELYERLEELDADKA-----EMRASRILHGLGFTPAMQrkklkdFSGGWRMRVALARALFIRPFMLL 255
Cdd:cd03231 76 LYLGHAPG-IKTTLSVLENLRFWHADHSdeqveEALARVGLNGFEDRPVAQ------LSAGQQRRVALARLLLSGRPLWI 148
|
....*....
gi 564345351 256 LDEPTNHLD 264
Cdd:cd03231 149 LDEPTTALD 157
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
397-587 |
1.38e-05 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 48.10 E-value: 1.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 397 PPVIMVQNVSFKYtkdGPCIYNNlefGIDLDTR----VALVGPNGAGKSTLLKLLTGELLPTDGMIR--------KHSHV 464
Cdd:COG3845 3 PPALELRGITKRF---GGVVAND---DVSLTVRpgeiHALLGENGAGKSTLMKILYGLYQPDSGEILidgkpvriRSPRD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 465 ----KIGRYHQHLQ--------EQLDLDLSPLEYM---MKcypeiKEKEEMRKIIGRYGLtgkqQVSP---IRNLSDGQK 526
Cdd:COG3845 77 aialGIGMVHQHFMlvpnltvaENIVLGLEPTKGGrldRK-----AARARIRELSERYGL----DVDPdakVEDLSVGEQ 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564345351 527 CRV----CLawlaWQNPHMLFLDEPTNHLDIETIDALADAINEF--EG-GMMLVSHDFRLIQQVAQEI 587
Cdd:COG3845 148 QRVeilkAL----YRGARILILDEPTAVLTPQEADELFEILRRLaaEGkSIIFITHKLREVMAIADRV 211
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
400-566 |
1.52e-05 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 46.33 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHShVKIGRYHQH-LQEQLD 478
Cdd:cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDG-VDISKIGLHdLRSRIS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 479 L--------------DLSPLEYmmkcYPEikekEEMRKIIGRYGLTGKQQVSPIR----------NLSDGQKCRVCLAWL 534
Cdd:cd03244 82 IipqdpvlfsgtirsNLDPFGE----YSD----EELWQALERVGLKEFVESLPGGldtvveeggeNLSVGQRQLLCLARA 153
|
170 180 190
....*....|....*....|....*....|..
gi 564345351 535 AWQNPHMLFLDEPTNHLDIETIDALADAINEF 566
Cdd:cd03244 154 LLRKSKILVLDEATASVDPETDALIQKTIREA 185
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
403-565 |
1.85e-05 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 47.65 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 403 QNVSFKYTKDGPCIYNnLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPT------DGM-IRKhshVKIGRYHQHL-- 473
Cdd:PRK13657 338 DDVSFSYDNSRQGVED-VSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQsgriliDGTdIRT---VTRASLRRNIav 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 474 --QEQLDLDLSPLEYMMKCYPEIKEkEEMRK--------------------IIGRYGltgkqqvspiRNLSDGQKCRVCL 531
Cdd:PRK13657 414 vfQDAGLFNRSIEDNIRVGRPDATD-EEMRAaaeraqahdfierkpdgydtVVGERG----------RQLSGGERQRLAI 482
|
170 180 190
....*....|....*....|....*....|....
gi 564345351 532 AWLAWQNPHMLFLDEPTNHLDIETIDALADAINE 565
Cdd:PRK13657 483 ARALLKDPPILILDEATSALDVETEAKVKAALDE 516
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
105-310 |
1.98e-05 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 46.23 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 105 LSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKrevpipehidIYHLTREmppsdktplqcvmEVDTE---RAMLE---- 177
Cdd:COG1134 42 LKDVSFEVERGESVGIIGRNGAGKSTLLKLIAG----------ILEPTSG-------------RVEVNgrvSALLElgag 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 178 -------REaerlahedaecekLMELYERLeeLDADKAEMRA--SRILH--GLG-F--TPamqrkkLKDFSGGWRMRVAL 243
Cdd:COG1134 99 fhpeltgRE-------------NIYLNGRL--LGLSRKEIDEkfDEIVEfaELGdFidQP------VKTYSSGMRARLAF 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 244 ARALFIRPFMLLLDEptnhldldacvWL-----------EEELKTFK---RILVLVSHSQDFLNGVCTNIIHMHNKKLKY 309
Cdd:COG1134 158 AVATAVDPDILLVDE-----------VLavgdaafqkkcLARIRELResgRTVIFVSHSMGAVRRLCDRAIWLEKGRLVM 226
|
.
gi 564345351 310 Y 310
Cdd:COG1134 227 D 227
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
233-309 |
2.14e-05 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 45.22 E-value: 2.14e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564345351 233 FSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLngvctniiHMHNKKLKY 309
Cdd:cd03223 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLW--------KFHDRVLDL 160
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
94-264 |
2.45e-05 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 46.23 E-value: 2.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKReVPiPEHIDIyHLtremppsDKTPlqcVMEVDTER 173
Cdd:PRK11248 6 HLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF-VP-YQHGSI-TL-------DGKP---VEGPGAER 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 174 AMLEREAERLAHEDAECEKLMELyeRLEELDADKAEMRASRILHGLGFTPAMQRKkLKDFSGGWRMRVALARALFIRPFM 253
Cdd:PRK11248 73 GVVFQNEGLLPWRNVQDNVAFGL--QLAGVEKMQRLEIAHQMLKKVGLEGAEKRY-IWQLSGGQRQRVGIARALAANPQL 149
|
170
....*....|.
gi 564345351 254 LLLDEPTNHLD 264
Cdd:PRK11248 150 LLLDEPFGALD 160
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
206-289 |
2.51e-05 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 46.99 E-value: 2.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 206 DKAEM--RASRILHGLGFTPAMQRKKlKDFSGGWRMRVALARALFIRPFMLLLDEP-TNhldLDAC--VWLEEELKTFKR 280
Cdd:COG3839 106 PKAEIdrRVREAAELLGLEDLLDRKP-KQLSGGQRQRVALGRALVREPKVFLLDEPlSN---LDAKlrVEMRAEIKRLHR 181
|
90
....*....|...
gi 564345351 281 IL----VLVSHSQ 289
Cdd:COG3839 182 RLgtttIYVTHDQ 194
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
519-589 |
2.59e-05 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 47.10 E-value: 2.59e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564345351 519 RNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETI----DALADAINEFEGGMMLVSHDFRLIQQVAQE-IWV 589
Cdd:TIGR03269 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAklvhNALEEAVKASGISMVLTSHWPEVIEDLSDKaIWL 242
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
396-582 |
2.75e-05 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 45.89 E-value: 2.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 396 PPPVIMVQNVSFKY-TKDGP-CIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHV--------- 464
Cdd:COG4181 5 SAPIIELRGLTKTVgTGAGElTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDlfaldedar 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 465 ------KIGRYHQhlQEQLDLDLSPLEYMMkcYP-EIKE----KEEMRKIIGRYGLTGKQQVSPiRNLSDGQKCRVCLAW 533
Cdd:COG4181 85 arlrarHVGFVFQ--SFQLLPTLTALENVM--LPlELAGrrdaRARARALLERVGLGHRLDHYP-AQLSGGEQQRVALAR 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564345351 534 LAWQNPHMLFLDEPTNHLDIETIDALAD---AINEfEGG--MMLVSHDFRLIQQ 582
Cdd:COG4181 160 AFATEPAILFADEPTGNLDAATGEQIIDllfELNR-ERGttLVLVTHDPALAAR 212
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
92-264 |
2.82e-05 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 47.01 E-value: 2.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 92 IINLSLTFHGQ----ELLSDTKLELNSGRRYGLIGLNGIGKSML-LSAVgkREVPIPEHI----DIYHLTREMPPSDKTP 162
Cdd:PRK15134 8 IENLSVAFRQQqtvrTVVNDVSLQIEAGETLALVGESGSGKSVTaLSIL--RLLPSPPVVypsgDIRFHGESLLHASEQT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 163 LQCVMevDTERAMLEREAERLAHEDAECEKlmELYERLEELDADKAEMRASRILHGLGFTPAMQ-RKKLKDF----SGGW 237
Cdd:PRK15134 86 LRGVR--GNKIAMIFQEPMVSLNPLHTLEK--QLYEVLSLHRGMRREAARGEILNCLDRVGIRQaAKRLTDYphqlSGGE 161
|
170 180
....*....|....*....|....*..
gi 564345351 238 RMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:PRK15134 162 RQRVMIAMALLTRPELLIADEPTTALD 188
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
94-268 |
2.95e-05 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 45.64 E-value: 2.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLL-SAVGkrevpipehidiyhLTRemppsdktPLQCVMEVDTE 172
Cdd:PRK13539 7 DLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLrLIAG--------------LLP--------PAAGTIKLDGG 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 173 RAMLEREAER---LAHEDAeCEKLMELYERLE---------ELDADKAemrASRI-LHGLGFTPAmqrkklKDFSGGWRM 239
Cdd:PRK13539 65 DIDDPDVAEAchyLGHRNA-MKPALTVAENLEfwaaflggeELDIAAA---LEAVgLAPLAHLPF------GYLSAGQKR 134
|
170 180 190
....*....|....*....|....*....|
gi 564345351 240 RVALARAL-FIRPfMLLLDEPTNHLDLDAC 268
Cdd:PRK13539 135 RVALARLLvSNRP-IWILDEPTAALDAAAV 163
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
193-264 |
3.11e-05 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 46.20 E-value: 3.11e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564345351 193 LMELYERLEELDADKAEMRASRILHGLGFTPAMQRkkLKD----FSGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:COG0444 109 IAEPLRIHGGLSKAEARERAIELLERVGLPDPERR--LDRypheLSGGMRQRVMIARALALEPKLLIADEPTTALD 182
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
101-264 |
3.22e-05 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 45.55 E-value: 3.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 101 GQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEH--IDIYHLTREMPPSDKTPLQCVMEVDT------- 171
Cdd:cd03252 14 GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRvlVDGHDLALADPAWLRRQVGVVLQENVlfnrsir 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 172 ERAMLEREAERLaHEDAECEKLMELYERLEELDADKAEMRASRilhGLGFtpamqrkklkdfSGGWRMRVALARALFIRP 251
Cdd:cd03252 94 DNIALADPGMSM-ERVIEAAKLAGAHDFISELPEGYDTIVGEQ---GAGL------------SGGQRQRIAIARALIHNP 157
|
170
....*....|...
gi 564345351 252 FMLLLDEPTNHLD 264
Cdd:cd03252 158 RILIFDEATSALD 170
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
521-579 |
3.30e-05 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 45.54 E-value: 3.30e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564345351 521 LSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAI----NEFEGGMMLVSHDFRL 579
Cdd:PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLfslnREHGTTLILVTHDLQL 209
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
400-595 |
3.37e-05 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 45.78 E-value: 3.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKdgpciyNNLEFGIDL-----DTRVaLVGPNGAGKSTLLKLLTGELLPTDGMI---------RKHSHVK 465
Cdd:PRK11124 3 IQLNGINCFYGA------HQALFDITLdcpqgETLV-LLGPSGAGKSSLLRVLNLLEMPRSGTLniagnhfdfSKTPSDK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 466 IGR------------YH--QHLQEQLDLdlspLEYMMKCYPEIKE--KEEMRKIIGRYGLTGKQQVSPIrNLSDGQKCRV 529
Cdd:PRK11124 76 AIRelrrnvgmvfqqYNlwPHLTVQQNL----IEAPCRVLGLSKDqaLARAEKLLERLRLKPYADRFPL-HLSGGQQQRV 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564345351 530 CLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEF-EGGM--MLVSHDFRLIQQVAQEIWVCEKQTI 595
Cdd:PRK11124 151 AIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELaETGItqVIVTHEVEVARKTASRVVYMENGHI 219
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
120-293 |
3.53e-05 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 45.29 E-value: 3.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 120 LIGLNGIGKSMLLSAVgkrevpipehidIYHLTREMPPSDKtplqcvmEVDTERAMLeREAERLAhedaeceklmelYER 199
Cdd:cd03240 27 IVGQNGAGKTTIIEAL------------KYALTGELPPNSK-------GGAHDPKLI-REGEVRA------------QVK 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 200 LEELDADKAEMRASRILH----------GLGFTPAMQ-RKKLkdfSGGWRM------RVALARALFIRPFMLLLDEPTNH 262
Cdd:cd03240 75 LAFENANGKKYTITRSLAilenvifchqGESNWPLLDmRGRC---SGGEKVlasliiRLALAETFGSNCGILALDEPTTN 151
|
170 180 190
....*....|....*....|....*....|....*.
gi 564345351 263 LDLDACVW-----LEEELKTFKRILVLVSHSQDFLN 293
Cdd:cd03240 152 LDEENIEEslaeiIEERKSQKNFQLIVITHDEELVD 187
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
430-589 |
3.68e-05 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 46.70 E-value: 3.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 430 VALVGPNGAGKSTLLKLLTGELLPTDGMIrkHSHVKIGRYHQHLQEqlDLDLSPLEYMMKCYPEI----KEKEEmrkIIG 505
Cdd:COG1245 369 LGIVGPNGIGKTTFAKILAGVLKPDEGEV--DEDLKISYKPQYISP--DYDGTVEEFLRSANTDDfgssYYKTE---IIK 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 506 RYGLTgKQQVSPIRNLSDGQKCRV----CLAwlawQNPHMLFLDEPTNHLDIETIDALADAINEF----EGGMMLVSHDF 577
Cdd:COG1245 442 PLGLE-KLLDKNVKDLSGGELQRVaiaaCLS----RDADLYLLDEPSAHLDVEQRLAVAKAIRRFaenrGKTAMVVDHDI 516
|
170
....*....|..
gi 564345351 578 RLIQQVAQEIWV 589
Cdd:COG1245 517 YLIDYISDRLMV 528
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
417-575 |
3.75e-05 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 45.34 E-value: 3.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 417 YNNLEFGIDLDT----RVALVGPNGAGKSTLLKLLTGELLPTDGMIR----KHSHVKIGRY-------------HQHLQE 475
Cdd:PRK10771 11 YHHLPMRFDLTVergeRVAILGPSGAGKSTLLNLIAGFLTPASGSLTlngqDHTTTPPSRRpvsmlfqennlfsHLTVAQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 476 QLDLDLSPleyMMKCYPEikEKEEMRKIIGRYGLTGKQQVSPiRNLSDGQKCRVCLA-WLAWQNPhMLFLDEPTNHLD-- 552
Cdd:PRK10771 91 NIGLGLNP---GLKLNAA--QREKLHAIARQMGIEDLLARLP-GQLSGGQRQRVALArCLVREQP-ILLLDEPFSALDpa 163
|
170 180
....*....|....*....|....*
gi 564345351 553 --IETIDALADAINEFEGGMMLVSH 575
Cdd:PRK10771 164 lrQEMLTLVSQVCQERQLTLLMVSH 188
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
227-287 |
3.75e-05 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 45.93 E-value: 3.75e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564345351 227 RKKLKD----FSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKR--ILVLVSH 287
Cdd:PRK14243 142 KDKLKQsglsLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEqyTIIIVTH 208
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
413-574 |
3.92e-05 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 45.25 E-value: 3.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 413 GPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRkhshvkigryhqhLQEQLDLDLSPLEYM----- 487
Cdd:PRK13539 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK-------------LDGGDIDDPDVAEAChylgh 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 488 ---MKcyPEIKEKEEM---RKIIG-----------RYGLTGKQQVsPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNH 550
Cdd:PRK13539 81 rnaMK--PALTVAENLefwAAFLGgeeldiaaaleAVGLAPLAHL-PFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157
|
170 180
....*....|....*....|....*.
gi 564345351 551 LDIETIDALADAINEF--EGGMMLVS 574
Cdd:PRK13539 158 LDAAAVALFAELIRAHlaQGGIVIAA 183
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
394-582 |
3.98e-05 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 46.74 E-value: 3.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 394 KIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKhSHVKIGRYHQ-- 471
Cdd:PRK11160 333 AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILL-NGQPIADYSEaa 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 472 ------------H-----LQEQLDLDLspleymmkcyPEIKEkEEMRKIIGRYGLtGK--QQVSPI--------RNLSDG 524
Cdd:PRK11160 412 lrqaisvvsqrvHlfsatLRDNLLLAA----------PNASD-EALIEVLQQVGL-EKllEDDKGLnawlgeggRQLSGG 479
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 525 QKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGG--MMLVSHDFRLIQQ 582
Cdd:PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNktVLMITHRLTGLEQ 539
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
94-259 |
3.99e-05 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 45.23 E-value: 3.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSML------LSAVGKREVPIpEHIDIYHltreMPPSdktplqcvm 167
Cdd:cd03218 5 NLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTfymivgLVKPDSGKILL-DGQDITK----LPMH--------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 168 evdtERA-----MLEREA---ERLAHED---AECEKLMELY-ERLEELDADKAEMRASRILHGLGFTpamqrkklkdFSG 235
Cdd:cd03218 71 ----KRArlgigYLPQEAsifRKLTVEEnilAVLEIRGLSKkEREEKLEELLEEFHITHLRKSKASS----------LSG 136
|
170 180
....*....|....*....|....
gi 564345351 236 GWRMRVALARALFIRPFMLLLDEP 259
Cdd:cd03218 137 GERRRVEIARALATNPKFLLLDEP 160
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
83-265 |
4.01e-05 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 45.55 E-value: 4.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 83 SHPNSTDVHII--NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGkrevpipehidiyhltREMPPS-- 158
Cdd:PRK10575 3 EYTNHSDTTFAlrNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLG----------------RHQPPSeg 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 159 ----DKTPLQcvmevDTERAMLEREAERLAHE--DAECEKLMELYE-----------RLEELDADKAEMRASRIlhglGF 221
Cdd:PRK10575 67 eillDAQPLE-----SWSSKAFARKVAYLPQQlpAAEGMTVRELVAigrypwhgalgRFGAADREKVEEAISLV----GL 137
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 564345351 222 TPAMQRkkLKD-FSGGWRMRVALARALFIRPFMLLLDEPTNHLDL 265
Cdd:PRK10575 138 KPLAHR--LVDsLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDI 180
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
429-583 |
4.10e-05 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 45.22 E-value: 4.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 429 RVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVK--IGryhqhLQEQLDLDLSPLEY-MMKC------YPEIKEKEE 499
Cdd:cd03220 50 RIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSslLG-----LGGGFNPELTGRENiYLNGrllglsRKEIDEKID 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 500 mrKIIGRYGLtGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEF-EGGMM--LVSHD 576
Cdd:cd03220 125 --EIIEFSEL-GDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELlKQGKTviLVSHD 201
|
....*..
gi 564345351 577 FRLIQQV 583
Cdd:cd03220 202 PSSIKRL 208
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
209-287 |
4.22e-05 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 45.71 E-value: 4.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 209 EMRASRILHGLGFTpAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEEL----KTFKRILVL 284
Cdd:cd03294 138 EERAAEALELVGLE-GWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELlrlqAELQKTIVF 216
|
...
gi 564345351 285 VSH 287
Cdd:cd03294 217 ITH 219
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
94-288 |
4.57e-05 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 45.54 E-value: 4.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPE-----------HiDIYHltremPPSDktp 162
Cdd:PRK14239 10 DLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEvtitgsivyngH-NIYS-----PRTD--- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 163 lqcVMEVDTERAMLEREAERLAhedaeceklMELYE------RLEELDaDKAEMRAS--RILHGlgftpAMQRKKLKD-- 232
Cdd:PRK14239 81 ---TVDLRKEIGMVFQQPNPFP---------MSIYEnvvyglRLKGIK-DKQVLDEAveKSLKG-----ASIWDEVKDrl 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564345351 233 ------FSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKR--ILVLVSHS 288
Cdd:PRK14239 143 hdsalgLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDdyTMLLVTRS 206
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
199-264 |
4.94e-05 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 45.88 E-value: 4.94e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564345351 199 RLEELDADKAEMRASRILHGLGFTPAMQRKKLKdFSGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:NF000106 112 R*LDLSRKDARARADELLERFSLTEAAGRAAAK-YSGGMRRRLDLAASMIGRPAVLYLDEPTTGLD 176
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
102-293 |
5.56e-05 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 44.95 E-value: 5.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 102 QELLSDTKLELNSGRRYGLIGLNGIGKSMLLSavgkrevpipehidiyHLTREMPpsdKTPLQCVMEV-----DTERAML 176
Cdd:COG2401 43 RYVLRDLNLEIEPGEIVLIVGASGSGKSTLLR----------------LLAGALK---GTPVAGCVDVpdnqfGREASLI 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 177 EReaerLAHEDaeceklmelyerleeldaDKAEmrASRILHGLGF-TPAMQRKKLKDFSGGWRMRVALARALFIRPFMLL 255
Cdd:COG2401 104 DA----IGRKG------------------DFKD--AVELLNAVGLsDAVLWLRRFKELSTGQKFRFRLALLLAERPKLLV 159
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 564345351 256 LDEPTNHLD-LDACVW---LEEELKTFKRILVLVSHSQDFLN 293
Cdd:COG2401 160 IDEFCSHLDrQTAKRVarnLQKLARRAGITLVVATHHYDVID 201
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
233-264 |
6.58e-05 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 45.49 E-value: 6.58e-05
10 20 30
....*....|....*....|....*....|..
gi 564345351 233 FSGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:COG4608 158 FSGGQRQRIGIARALALNPKLIVCDEPVSALD 189
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
423-589 |
6.75e-05 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 43.57 E-value: 6.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 423 GIDLDTR----VALVGPNGAGKSTLLKLLTGELLPTDGMIRKHshvkiGRYHQHlqeqldldLSPleymmkcypeikeKE 498
Cdd:cd03216 18 GVSLSVRrgevHALLGENGAGKSTLMKILSGLYKPDSGEILVD-----GKEVSF--------ASP-------------RD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 499 EMRKIIGR-YGLTG--KQQVSPIRNLSdgqkcrvclawlawQNPHMLFLDEPTNHLDIETIDALADAINEF--EG-GMML 572
Cdd:cd03216 72 ARRAGIAMvYQLSVgeRQMVEIARALA--------------RNARLLILDEPTAALTPAEVERLFKVIRRLraQGvAVIF 137
|
170
....*....|....*..
gi 564345351 573 VSHDFRLIQQVAQEIWV 589
Cdd:cd03216 138 ISHRLDEVFEIADRVTV 154
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
234-287 |
7.12e-05 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 45.87 E-value: 7.12e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 564345351 234 SGGWRMRVALARALFIRPFMLLLDEPTNHLDLdACVWLEEELKTFK-RILVLVSH 287
Cdd:TIGR00958 619 SGGQKQRIAIARALVRKPRVLILDEATSALDA-ECEQLLQESRSRAsRTVLLIAH 672
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
105-307 |
7.23e-05 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 45.21 E-value: 7.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 105 LSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDI--YHLTREmppsdkTPLQCVMEVDTERAMLEREAER 182
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIagYHITPE------TGNKNLKKLRKKVSLVFQFPEA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 183 LAHEDAECEKLMELYERLEELDaDKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNH 262
Cdd:PRK13641 97 QLFENTVLKDVEFGPKNFGFSE-DEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAG 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 564345351 263 LDLDACVWLEEELKTFKR---ILVLVSHSQDFLNGVCTNIIHMHNKKL 307
Cdd:PRK13641 176 LDPEGRKEMMQLFKDYQKaghTVILVTHNMDDVAEYADDVLVLEHGKL 223
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
520-589 |
7.32e-05 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 44.63 E-value: 7.32e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564345351 520 NLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADA-----INEFEGGMMLVSHDfrlIQQVAQEIWV 589
Cdd:cd03290 140 NLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEgilkfLQDDKRTLVLVTHK---LQYLPHADWI 211
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
104-287 |
7.41e-05 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 44.38 E-value: 7.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 104 LLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVgkrevpipehIDIYHLTREMPPSDKTPLQC---------VMEVDTERA 174
Cdd:cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALL----------ENFYQPQGGQVLLDGKPISQyehkylhskVSLVGQEPV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 175 MLERE-AERLAH--EDAECEKLMELyerleeldADKAemrasrilHGLGFTPAMQR-------KKLKDFSGGWRMRVALA 244
Cdd:cd03248 99 LFARSlQDNIAYglQSCSFECVKEA--------AQKA--------HAHSFISELASgydtevgEKGSQLSGGQKQRVAIA 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 564345351 245 RALFIRPFMLLLDEPTNHLDLDACVWLEEELKTF--KRILVLVSH 287
Cdd:cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQALYDWpeRRTVLVIAH 207
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
423-553 |
8.05e-05 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 45.22 E-value: 8.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 423 GIDLDTR----VALVGPNGAGKSTLLKLLTGELLPTDGMIR-------KHSHVKIGRyhqhlqeqlDLDLSPLEYMMKCY 491
Cdd:PRK09536 21 GVDLSVRegslVGLVGPNGAGKTTLLRAINGTLTPTAGTVLvagddveALSARAASR---------RVASVPQDTSLSFE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 492 PEIKEKEEM-----RKIIGRYGLTGKQQVS--------------PIRNLSDGQKCRVCLA-WLAWQNPhMLFLDEPTNHL 551
Cdd:PRK09536 92 FDVRQVVEMgrtphRSRFDTWTETDRAAVEramertgvaqfadrPVTSLSGGERQRVLLArALAQATP-VLLLDEPTASL 170
|
..
gi 564345351 552 DI 553
Cdd:PRK09536 171 DI 172
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
196-302 |
8.20e-05 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 46.16 E-value: 8.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 196 LYERLEELDADKAEMRASRILHGLGFTPAMQRKKlKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEEL 275
Cdd:TIGR01257 2035 LYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA-GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTI 2113
|
90 100 110
....*....|....*....|....*....|
gi 564345351 276 KTF---KRILVLVSHSQDFLNGVCTNIIHM 302
Cdd:TIGR01257 2114 VSIireGRAVVLTSHSMEECEALCTRLAIM 2143
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
218-290 |
8.29e-05 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 44.57 E-value: 8.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 218 GLGFTPAM-----QRKKLKD-----------------FSGGWRMRVALARALFIRPFMLLLDEPTNHLD---------LD 266
Cdd:PRK10771 93 GLGLNPGLklnaaQREKLHAiarqmgiedllarlpgqLSGGQRQRVALARCLVREQPILLLDEPFSALDpalrqemltLV 172
|
90 100
....*....|....*....|....
gi 564345351 267 ACVWLEEELKtfkriLVLVSHSQD 290
Cdd:PRK10771 173 SQVCQERQLT-----LLMVSHSLE 191
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
101-302 |
8.30e-05 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 44.84 E-value: 8.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 101 GQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSavgkrevpipehidiyHLTREMPPSDKTPLQCVMEVDTERA--MLER 178
Cdd:PRK13636 18 GTHALKGININIKKGEVTAILGGNGAGKSTLFQ----------------NLNGILKPSSGRILFDGKPIDYSRKglMKLR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 179 EAERLAHEDAECEKL-MELYERLE------ELDADKAEMRASRILHGLGFTPaMQRKKLKDFSGGWRMRVALARALFIRP 251
Cdd:PRK13636 82 ESVGMVFQDPDNQLFsASVYQDVSfgavnlKLPEDEVRKRVDNALKRTGIEH-LKDKPTHCLSFGQKKRVAIAGVLVMEP 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564345351 252 FMLLLDEPTNHLD----LDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHM 302
Cdd:PRK13636 161 KVLVLDEPTAGLDpmgvSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVM 215
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
94-264 |
8.52e-05 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 43.46 E-value: 8.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 94 NLSLTFHGQE--LLSDTKLELNSGRRYGLIGLNGIGKSMLLSAvgkrevpipehidiyhLTREMPPSDKTplqcvmevdt 171
Cdd:cd03247 5 NVSFSYPEQEqqVLKNLSLELKQGEKIALLGRSGSGKSTLLQL----------------LTGDLKPQQGE---------- 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 172 eraMLEREAERLAHEDAECEKLMELYERleeldadkAEMRASRILHGLGftpamqrkklKDFSGGWRMRVALARALFIRP 251
Cdd:cd03247 59 ---ITLDGVPVSDLEKALSSLISVLNQR--------PYLFDTTLRNNLG----------RRFSGGERQRLALARILLQDA 117
|
170
....*....|...
gi 564345351 252 FMLLLDEPTNHLD 264
Cdd:cd03247 118 PIVLLDEPTVGLD 130
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
398-574 |
8.69e-05 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 44.87 E-value: 8.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 398 PVIMVQNVSFKYtKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRkhshVKIGRYHQHLQEQL 477
Cdd:PRK15056 5 AGIVVNDVTVTW-RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKIS----ILGQPTRQALQKNL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 478 DLDLSPLEYMMKCYPEIKEKEEMrkiIGRYGLTG---------KQQVSP--------------IRNLSDGQKCRVCLAWL 534
Cdd:PRK15056 80 VAYVPQSEEVDWSFPVLVEDVVM---MGRYGHMGwlrrakkrdRQIVTAalarvdmvefrhrqIGELSGGQKKRVFLARA 156
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 564345351 535 AWQNPHMLFLDEPTNHLDIETIDALADAINEF--EGGMMLVS 574
Cdd:PRK15056 157 IAQQGQVILLDEPFTGVDVKTEARIISLLRELrdEGKTMLVS 198
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
232-292 |
8.96e-05 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 44.24 E-value: 8.96e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564345351 232 DFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEE-----LKTFKRILVLVSHSQDFL 292
Cdd:cd03290 140 NLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEgilkfLQDDKRTLVLVTHKLQYL 205
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
394-442 |
9.57e-05 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 45.58 E-value: 9.57e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 564345351 394 KIPPPVIMVQNVSFKYTKDGPcIYNNLEFGIDLDTRVALVGPNGAGKST 442
Cdd:COG5265 352 VVGGGEVRFENVSFGYDPERP-ILKGVSFEVPAGKTVAIVGPSGAGKST 399
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
424-577 |
9.58e-05 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 43.85 E-value: 9.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 424 IDLDTRVAL-VGPNGAGKST---------LLKLLTGELLPTDGMIRKHSHVKI--------GRYH--------------- 470
Cdd:COG0419 19 IDFDDGLNLiVGPNGAGKSTileairyalYGKARSRSKLRSDLINVGSEEASVelefehggKRYRierrqgefaefleak 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 471 -QHLQEQLD--LDLSPLEYMMKCYPEIKEKEEmRKIIGRYGLTGKQQV--------SPIRNLSDGQKCRVCLAWLAwqnp 539
Cdd:COG0419 99 pSERKEALKrlLGLEIYEELKERLKELEEALE-SALEELAELQKLKQEilaqlsglDPIETLSGGERLRLALADLL---- 173
|
170 180 190
....*....|....*....|....*....|....*...
gi 564345351 540 hMLFLDepTNHLDIETIDALADAINEfeggMMLVSHDF 577
Cdd:COG0419 174 -SLILD--FGSLDEERLERLLDALEE----LAIITHVI 204
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
493-576 |
1.01e-04 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 45.18 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 493 EIKEKEEMRKIIGRygltgkqqvsPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDI-ETIDAlADAINEFEGG-- 569
Cdd:PRK13409 195 EVVERLGLENILDR----------DISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIrQRLNV-ARLIRELAEGky 263
|
....*..
gi 564345351 570 MMLVSHD 576
Cdd:PRK13409 264 VLVVEHD 270
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
120-287 |
1.03e-04 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 43.85 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 120 LIGLNGIGKSMLLSAV-----GKREVPIPEHIDIYHltremPPSDKTPLQCVMEVDTERAMLER---EAERLAHEDAE-- 189
Cdd:COG0419 28 IVGPNGAGKSTILEAIryalyGKARSRSKLRSDLIN-----VGSEEASVELEFEHGGKRYRIERrqgEFAEFLEAKPSer 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 190 ---------CEKLMELYERLEELDAD----KAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALfirpfMLLL 256
Cdd:COG0419 103 kealkrllgLEIYEELKERLKELEEAlesaLEELAELQKLKQEILAQLSGLDPIETLSGGERLRLALADLL-----SLIL 177
|
170 180 190
....*....|....*....|....*....|....
gi 564345351 257 DepTNHLDldacvwlEEELKTFKRIL---VLVSH 287
Cdd:COG0419 178 D--FGSLD-------EERLERLLDALeelAIITH 202
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
161-589 |
1.07e-04 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 45.23 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 161 TPLQCVMEVDTERAMLEREAERLAHEDAecekLMELYERLEELDADKAEMRASRILHGLgftpamqrkklkdfSGGWRMR 240
Cdd:PRK10261 115 TSLNPVFTVGEQIAESIRLHQGASREEA----MVEAKRMLDQVRIPEAQTILSRYPHQL--------------SGGMRQR 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 241 VALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRIL----VLVSHSQDFLNGVCTNIIHMHNKKlKYYTGNYDQ 316
Cdd:PRK10261 177 VMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMsmgvIFITHDMGVVAEIADRVLVMYQGE-AVETGSVEQ 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 317 --------YVKTRLEleenqmkrfhwEQDQIAHMK--NYIARFGHGSakLARQAQSKEKTLQKMMASGltERVVSDKTLS 386
Cdd:PRK10261 256 ifhapqhpYTRALLA-----------AVPQLGAMKglDYPRRFPLIS--LEHPAKQEPPIEQDTVVDG--EPILQVRNLV 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 387 FYFPPCG----KIPPPVIMVQNVSFkytkdgpciynNLEFGIDLdtrvALVGPNGAGKSTLLKLLTGELLPTDGMIRKHS 462
Cdd:PRK10261 321 TRFPLRSgllnRVTREVHAVEKVSF-----------DLWPGETL----SLVGESGSGKSTTGRALLRLVESQGGEIIFNG 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 463 hvkigryhQHLQEQLDLDLSPLEYMMKC-----YPEIKEK-------------------EEMRK----IIGRYGLTGKQQ 514
Cdd:PRK10261 386 --------QRIDTLSPGKLQALRRDIQFifqdpYASLDPRqtvgdsimeplrvhgllpgKAAAArvawLLERVGLLPEHA 457
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564345351 515 VSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDI----ETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWV 589
Cdd:PRK10261 458 WRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVsirgQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAV 536
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
396-576 |
1.12e-04 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 44.31 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 396 PPPVIMVQNVSFKY-TKDGPciYNNLEfGIDLDTR----VALVGPNGAGKSTllklltgeLLPTDGMIrkhshvkigRYH 470
Cdd:COG1116 4 AAPALELRGVSKRFpTGGGG--VTALD-DVSLTVAagefVALVGPSGCGKSTllrliaglEKPTSGEV---------LVD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 471 QHLQEQLDLDLS--------------------PLEymMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPiRNLSDGQKCRVC 530
Cdd:COG1116 72 GKPVTGPGPDRGvvfqepallpwltvldnvalGLE--LRGVPKAERRERARELLELVGLAGFEDAYP-HQLSGGMRQRVA 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564345351 531 LA-WLAwQNPHMLFLDEPTNHLDIETIDALAD---AINEFEG-GMMLVSHD 576
Cdd:COG1116 149 IArALA-NDPEVLLMDEPFGALDALTRERLQDellRLWQETGkTVLFVTHD 198
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
423-580 |
1.13e-04 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 44.17 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 423 GIDLDTR----VALVGPNGAGKSTLLklltgellptdGMIRKHSHVKIGRYHQHLQEQLDLDLSPLE------YMMKCYP 492
Cdd:TIGR01978 18 GVNLTVKkgeiHAIMGPNGSGKSTLS-----------KTIAGHPSYEVTSGTILFKGQDLLELEPDEraraglFLAFQYP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 493 E----IKEKEEMRKIIGryGLTGKQQVSPI------------------------RNL----SDGQKCRVCLAWLAWQNPH 540
Cdd:TIGR01978 87 EeipgVSNLEFLRSALN--ARRSARGEEPLdlldfekllkeklalldmdeeflnRSVnegfSGGEKKRNEILQMALLEPK 164
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 564345351 541 MLFLDEPTNHLDIETIDALADAINEF---EGGMMLVSHDFRLI 580
Cdd:TIGR01978 165 LAILDEIDSGLDIDALKIVAEGINRLrepDRSFLIITHYQRLL 207
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
174-308 |
1.16e-04 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 44.00 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 174 AMLEREAERLAHEDA-ECEKLMELYERLEELDADkaemrasrilhglgftpamqrkklkdFSGGWRMRVALARALFIRPF 252
Cdd:PRK10584 113 ALLRGESSRQSRNGAkALLEQLGLGKRLDHLPAQ--------------------------LSGGEQQRVALARAFNGRPD 166
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564345351 253 MLLLDEPTNHLD-------LDACVWLEEELKTfkrILVLVSHSQDfLNGVCTNIIHMHNKKLK 308
Cdd:PRK10584 167 VLFADEPTGNLDrqtgdkiADLLFSLNREHGT---TLILVTHDLQ-LAARCDRRLRLVNGQLQ 225
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
400-559 |
1.19e-04 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 44.46 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLpTDGMIrkhshvkigryhqhlqeQLD- 478
Cdd:cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDI-----------------QIDg 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 479 --LDLSPLEYMMKCYPEIKEK--------------------EEMRKIIGRYGLTGKQQVSPIR----------NLSDGQK 526
Cdd:cd03289 65 vsWNSVPLQKWRKAFGVIPQKvfifsgtfrknldpygkwsdEEIWKVAEEVGLKSVIEQFPGQldfvlvdggcVLSHGHK 144
|
170 180 190
....*....|....*....|....*....|...
gi 564345351 527 CRVCLAWLAWQNPHMLFLDEPTNHLDIETIDAL 559
Cdd:cd03289 145 QLMCLARSVLSKAKILLLDEPSAHLDPITYQVI 177
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
407-575 |
1.39e-04 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 44.88 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 407 FKYTKDGPCIY--NNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQL----DLD 480
Cdd:PRK13545 28 FFRSKDGEYHYalNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLtgieNIE 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 481 LSPLeyMMKCYPEiKEKEEMRKIIgRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALA 560
Cdd:PRK13545 108 LKGL--MMGLTKE-KIKEIIPEII-EFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCL 183
|
170
....*....|....*...
gi 564345351 561 DAINEF-EGG--MMLVSH 575
Cdd:PRK13545 184 DKMNEFkEQGktIFFISH 201
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
231-287 |
1.49e-04 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 45.02 E-value: 1.49e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564345351 231 KDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFK----RILVLVSH 287
Cdd:PTZ00265 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKdkadKTIITIAH 1417
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
233-287 |
1.54e-04 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 44.77 E-value: 1.54e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564345351 233 FSGGWRMRVALARALFIRPFMLLLDEPTNHLD-------LDAcvwLEEELKtfKRILVLVSH 287
Cdd:COG1132 477 LSGGQRQRIAIARALLKDPPILILDEATSALDtetealiQEA---LERLMK--GRTTIVIAH 533
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
430-589 |
1.59e-04 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 44.80 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 430 VALVGPNGAGKSTLLKLLTGELLPTDGMIrkHSHVKIGRYHQHLQEqlDLDLSPLEYMMKC---------YPEIKEKEEM 500
Cdd:PRK13409 368 IGIVGPNGIGKTTFAKLLAGVLKPDEGEV--DPELKISYKPQYIKP--DYDGTVEDLLRSItddlgssyyKSEIIKPLQL 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 501 RKIIGRygltgkqqvsPIRNLSDGQKCRV----CLAwlawQNPHMLFLDEPTNHLDIETIDALADAIN----EFEGGMML 572
Cdd:PRK13409 444 ERLLDK----------NVKDLSGGELQRVaiaaCLS----RDADLYLLDEPSAHLDVEQRLAVAKAIRriaeEREATALV 509
|
170
....*....|....*..
gi 564345351 573 VSHDFRLIQQVAQEIWV 589
Cdd:PRK13409 510 VDHDIYMIDYISDRLMV 526
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
430-587 |
1.63e-04 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 43.80 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 430 VALVGPNGAGKSTLLKLLTGELLPTDG----------MIR-KHSHVKIGRYHQ--HLQEQLDL---------DLSPLEYM 487
Cdd:PRK10619 34 ISIIGSSGSGKSTFLRCINFLEKPSEGsivvngqtinLVRdKDGQLKVADKNQlrLLRTRLTMvfqhfnlwsHMTVLENV 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 488 MKCYPEI------KEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALAD 561
Cdd:PRK10619 114 MEAPIQVlglskqEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR 193
|
170 180
....*....|....*....|....*....
gi 564345351 562 AINEF--EGG-MMLVSHDFRLIQQVAQEI 587
Cdd:PRK10619 194 IMQQLaeEGKtMVVVTHEMGFARHVSSHV 222
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
400-583 |
1.66e-04 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 44.94 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGmirkHSHVK--IGRYHQH----- 472
Cdd:TIGR00957 637 ITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG----HVHMKgsVAYVPQQawiqn 712
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 473 --LQEQLDL--DLSPLEY---MMKC--YPEIkekeEM-----RKIIGRYGLtgkqqvspirNLSDGQKCRVCLAWLAWQN 538
Cdd:TIGR00957 713 dsLRENILFgkALNEKYYqqvLEACalLPDL----EIlpsgdRTEIGEKGV----------NLSGGQKQRVSLARAVYSN 778
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564345351 539 PHMLFLDEPTNHLDIETIDALADAINEFEGGM-----MLVSHDFRLIQQV 583
Cdd:TIGR00957 779 ADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLknktrILVTHGISYLPQV 828
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
430-593 |
1.67e-04 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 42.94 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 430 VALVGPNGAGKSTLLKLLTGELLPTDGMIrkhshvkigryhqhlqeqlDLDLSPLEYMmkcypeikekeemrkiigrygl 509
Cdd:cd03222 28 IGIVGPNGTGKTTAVKILAGQLIPNGDND-------------------EWDGITPVYK---------------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 510 tgKQQVSpirnLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEF----EGGMMLVSHDFRLIQQVAQ 585
Cdd:cd03222 67 --PQYID----LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLseegKKTALVVEHDLAVLDYLSD 140
|
....*...
gi 564345351 586 EIWVCEKQ 593
Cdd:cd03222 141 RIHVFEGE 148
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
234-264 |
1.87e-04 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 43.30 E-value: 1.87e-04
10 20 30
....*....|....*....|....*....|.
gi 564345351 234 SGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:cd03249 141 SGGQKQRIAIARALLRNPKILLLDEATSALD 171
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
229-287 |
1.93e-04 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 44.03 E-value: 1.93e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564345351 229 KLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTF----KRILvLVSH 287
Cdd:PRK13537 135 KVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLlargKTIL-LTTH 196
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
431-560 |
2.10e-04 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 43.62 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 431 ALVGPNGAGKSTLLKLLTGELLPTDGMI-------RKHSHVKIGRYHQHLQEQLdldlSPLEYM-------MKCYPeike 496
Cdd:PRK10575 41 GLIGHNGSGKSTLLKMLGRHQPPSEGEIlldaqplESWSSKAFARKVAYLPQQL----PAAEGMtvrelvaIGRYP---- 112
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564345351 497 keeMRKIIGRYGLTGKQQV---------SPIRN-----LSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDI-ETIDALA 560
Cdd:PRK10575 113 ---WHGALGRFGAADREKVeeaislvglKPLAHrlvdsLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIaHQVDVLA 188
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
430-576 |
2.45e-04 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 43.12 E-value: 2.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 430 VALVGPNGAGKSTLLKLLTGELLPT----------DGMIRKHSHVKIGRYHQHLQE-QLD-------LDLSPLEYMMKCY 491
Cdd:cd03236 29 LGLVGPNGIGKSTALKILAGKLKPNlgkfddppdwDEILDEFRGSELQNYFTKLLEgDVKvivkpqyVDLIPKAVKGKVG 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 492 PEIKEKEE---MRKIIGRYGLTGKQQvSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIE---TIDALADAINE 565
Cdd:cd03236 109 ELLKKKDErgkLDELVDQLELRHVLD-RNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKqrlNAARLIRELAE 187
|
170
....*....|.
gi 564345351 566 FEGGMMLVSHD 576
Cdd:cd03236 188 DDNYVLVVEHD 198
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
234-260 |
2.49e-04 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 42.81 E-value: 2.49e-04
10 20
....*....|....*....|....*..
gi 564345351 234 SGGWRMRVALARALFIRPFMLLLDEPT 260
Cdd:cd03224 134 SGGEQQMLAIARALMSRPKLLLLDEPS 160
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
222-303 |
2.55e-04 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 43.84 E-value: 2.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 222 TPAMQrKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKR---ILVLVSHSQDFLNGVCTN 298
Cdd:PRK10762 386 TPSME-QAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAeglSIILVSSEMPEVLGMSDR 464
|
....*
gi 564345351 299 IIHMH 303
Cdd:PRK10762 465 ILVMH 469
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
400-595 |
2.67e-04 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 43.23 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPCIY---NNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIR---------------KH 461
Cdd:PRK13646 3 IRFDNVSYTYQKGTPYEHqaiHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTvdditithktkdkyiRP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 462 SHVKIGRYHQHLQEQL-------DLDLSPLEYMMkcypEIKE-KEEMRKIIGRYGLTGK-QQVSPIRnLSDGQKCRVCLA 532
Cdd:PRK13646 83 VRKRIGMVFQFPESQLfedtverEIIFGPKNFKM----NLDEvKNYAHRLLMDLGFSRDvMSQSPFQ-MSGGQMRKIAIV 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564345351 533 WLAWQNPHMLFLDEPTNHLDIETIDALADAINEFE----GGMMLVSHDFRLIQQVAQEIWVCEKQTI 595
Cdd:PRK13646 158 SILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQtdenKTIILVSHDMNEVARYADEVIVMKEGSI 224
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
200-259 |
3.16e-04 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 42.71 E-value: 3.16e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564345351 200 LE--ELDADKAEMRASRILHGLGFT-----PAMQrkklkdFSGGWRMRVALARALFIRPFMLLLDEP 259
Cdd:COG1137 103 LElrKLSKKEREERLEELLEEFGIThlrksKAYS------LSGGERRRVEIARALATNPKFILLDEP 163
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
206-290 |
3.41e-04 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 42.81 E-value: 3.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 206 DKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDAcvwlEEELKT-FKRI--- 281
Cdd:PRK13649 119 EEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG----RKELMTlFKKLhqs 194
|
90
....*....|..
gi 564345351 282 ---LVLVSHSQD 290
Cdd:PRK13649 195 gmtIVLVTHLMD 206
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
213-264 |
3.47e-04 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 43.64 E-value: 3.47e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 564345351 213 SRILHGLGFTPAMQRKkLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:PRK13409 435 SEIIKPLQLERLLDKN-VKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
232-304 |
3.94e-04 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 43.10 E-value: 3.94e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564345351 232 DFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTF----KRILVLVSHSQDFLNGVCTNIIHMHN 304
Cdd:PRK10070 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLqakhQRTIVFISHDLDEAMRIGDRIAIMQN 240
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
400-563 |
4.00e-04 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 43.55 E-value: 4.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKYTKDGPCIYNnlefgIDLD--TR--VALVGPNGAGKSTLLKLLTGELLPTDGMIR-------KHSH----- 463
Cdd:PRK10790 341 IDIDNVSFAYRDDNLVLQN-----INLSvpSRgfVALVGHTGSGKSTLASLLMGYYPLTEGEIRldgrplsSLSHsvlrq 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 464 -------------------VKIGRYHQHLQEQLDLDLSPLEYMMKCYPEikekeemrkiiGRYGLTGKQQvspiRNLSDG 524
Cdd:PRK10790 416 gvamvqqdpvvladtflanVTLGRDISEEQVWQALETVQLAELARSLPD-----------GLYTPLGEQG----NNLSVG 480
|
170 180 190
....*....|....*....|....*....|....*....
gi 564345351 525 QKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAI 563
Cdd:PRK10790 481 QKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQAL 519
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
208-330 |
4.28e-04 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 42.77 E-value: 4.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 208 AEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDldaCVWLEEELKTFKRI------ 281
Cdd:PRK13651 141 AKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLD---PQGVKEILEIFDNLnkqgkt 217
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 564345351 282 LVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGNYDQYVKTRLeLEENQMK 330
Cdd:PRK13651 218 IILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSDNKF-LIENNME 265
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
234-264 |
4.35e-04 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 42.22 E-value: 4.35e-04
10 20 30
....*....|....*....|....*....|.
gi 564345351 234 SGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:cd03251 140 SGGQRQRIAIARALLKDPPILILDEATSALD 170
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
225-302 |
4.40e-04 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 42.01 E-value: 4.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 225 MQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEE---ELKTFKRILVL-VSHSQDFLNGvCTNII 300
Cdd:PRK10247 130 ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEiihRYVREQNIAVLwVTHDKDEINH-ADKVI 208
|
..
gi 564345351 301 HM 302
Cdd:PRK10247 209 TL 210
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
103-309 |
4.46e-04 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 42.32 E-value: 4.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 103 ELLSDTKLELNSGRRYGLIGLNGIGKSM---LLSAV-----GKREVP--IPEHIDIYHLTR-------------EMPPSD 159
Cdd:cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTtlkILSGLlqptsGEVRVAglVPWKRRKKFLRRigvvfgqktqlwwDLPVID 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 160 KTPLQcvmevdteRAMLEREAERLAHEDAECEKLMELyerleeldadkaemraSRILHglgfTPAMQrkklkdFSGGWRM 239
Cdd:cd03267 115 SFYLL--------AAIYDLPPARFKKRLDELSELLDL----------------EELLD----TPVRQ------LSLGQRM 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564345351 240 RVALARALFIRPFMLLLDEPTNHLDLDAcvwlEEELKTFKRILV--------LVSHSQDFLNGVCTNIIHMHNKKLKY 309
Cdd:cd03267 161 RAEIAAALLHEPEILFLDEPTIGLDVVA----QENIRNFLKEYNrergttvlLTSHYMKDIEALARRVLVIDKGRLLY 234
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
430-552 |
4.89e-04 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 43.11 E-value: 4.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 430 VALVGPNGAGKSTLLKLLTGELLPtdGMIRKHSHV----KIGRYHQHLQ----EQLDL---DLSPLEYMM--------KC 490
Cdd:TIGR00955 54 LAVMGSSGAGKTTLMNALAFRSPK--GVKGSGSVLlngmPIDAKEMRAIsayvQQDDLfipTLTVREHLMfqahlrmpRR 131
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564345351 491 YPEIKEKEEMRKIIGRYGL-----TGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLD 552
Cdd:TIGR00955 132 VTKKEKRERVDEVLQALGLrkcanTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
495-562 |
5.06e-04 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 43.08 E-value: 5.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 495 KEKEEMRKIIGRYGL--TGKQQvsPIRNLSDG--QKcrVCLA-WLAwQNPHMLFLDEPTNHLDI-------ETIDALADA 562
Cdd:COG1129 369 RERALAEEYIKRLRIktPSPEQ--PVGNLSGGnqQK--VVLAkWLA-TDPKVLILDEPTRGIDVgakaeiyRLIRELAAE 443
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
399-575 |
5.06e-04 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 42.38 E-value: 5.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 399 VIMVQNVSFKYTKDG----PCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMI-------RKHSHV--- 464
Cdd:PRK13633 4 MIKCKNVSYKYESNEesteKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVyvdgldtSDEENLwdi 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 465 --KIGRYHQHLQEQL-------DLDLSPlEYMMKCYPEIKEK-EEMRKIIGRYgltgKQQVSPIRNLSDGQKCRVCLAWL 534
Cdd:PRK13633 84 rnKAGMVFQNPDNQIvativeeDVAFGP-ENLGIPPEEIRERvDESLKKVGMY----EYRRHAPHLLSGGQKQRVAIAGI 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 564345351 535 AWQNPHMLFLDEPTNHLD----IETIDALADAINEFEGGMMLVSH 575
Cdd:PRK13633 159 LAMRPECIIFDEPTAMLDpsgrREVVNTIKELNKKYGITIILITH 203
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
400-595 |
5.18e-04 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 43.08 E-value: 5.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKY-TKDGPCIyNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHvKIGRYH-QHLQEQL 477
Cdd:PRK11176 342 IEFRNVTFTYpGKEVPAL-RNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGH-DLRDYTlASLRNQV 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 478 DLdLSPLEYMMK-------CYP--------EIKEKEEMR--------------KIIGRYGLtgkqqvspirNLSDGQKCR 528
Cdd:PRK11176 420 AL-VSQNVHLFNdtianniAYArteqysreQIEEAARMAyamdfinkmdngldTVIGENGV----------LLSGGQRQR 488
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564345351 529 VCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGG--MMLVSHDFRLIQQvAQEIWVCEKQTI 595
Cdd:PRK11176 489 IAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNrtSLVIAHRLSTIEK-ADEILVVEDGEI 556
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
202-264 |
5.23e-04 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 42.77 E-value: 5.23e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564345351 202 ELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:PRK15079 131 KLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD 193
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
232-307 |
5.60e-04 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 42.30 E-value: 5.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 232 DFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDAcvwlEEEL--------KTFKRILVLVSHSQDFLNGVCTNIIHMH 303
Cdd:PRK13645 150 ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKG----EEDFinlferlnKEYKKRIIMVTHNMDQVLRIADEVIVMH 225
|
....
gi 564345351 304 NKKL 307
Cdd:PRK13645 226 EGKV 229
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
101-264 |
6.18e-04 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 42.91 E-value: 6.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 101 GQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSA------------VGKREVpipehidiyhltREMPPSDKtpLQCVME 168
Cdd:PRK11174 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNAllgflpyqgslkINGIEL------------RELDPESW--RKHLSW 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 169 VDTERAMLE---REAERLAHEDAECEKLMELYERleeldADKAEMrASRILHGLGFTPAMQRKKLkdfSGGWRMRVALAR 245
Cdd:PRK11174 428 VGQNPQLPHgtlRDNVLLGNPDASDEQLQQALEN-----AWVSEF-LPLLPQGLDTPIGDQAAGL---SVGQAQRLALAR 498
|
170
....*....|....*....
gi 564345351 246 ALFIRPFMLLLDEPTNHLD 264
Cdd:PRK11174 499 ALLQPCQLLLLDEPTASLD 517
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
234-264 |
6.45e-04 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 42.37 E-value: 6.45e-04
10 20 30
....*....|....*....|....*....|.
gi 564345351 234 SGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:COG1135 142 SGGQKQRVGIARALANNPKVLLCDEATSALD 172
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
398-577 |
7.94e-04 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 41.62 E-value: 7.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 398 PVIMVQNVSFKYTkdGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMiRKHSHVKIG-----RYHQH 472
Cdd:PRK14271 20 PAMAAVNLTLGFA--GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGY-RYSGDVLLGgrsifNYRDV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 473 LQEQLDLDL---SPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQV-----------------SPIRnLSDGQKCRVCLA 532
Cdd:PRK14271 97 LEFRRRVGMlfqRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQArltevglwdavkdrlsdSPFR-LSGGQQQLLCLA 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 564345351 533 WLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGGM--MLVSHDF 577
Cdd:PRK14271 176 RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLtvIIVTHNL 222
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
234-287 |
8.03e-04 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 40.49 E-value: 8.03e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 564345351 234 SGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKR---ILVLVSH 287
Cdd:cd03216 84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAqgvAVIFISH 140
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
400-595 |
8.23e-04 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 41.56 E-value: 8.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSfKYTKDGPCIyNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMI----RKHSHVK-----IGRYH 470
Cdd:cd03296 3 IEVRNVS-KRFGDFVAL-DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIlfggEDATDVPvqernVGFVF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 471 QH--------LQEQLDLDLSpLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPiRNLSDGQKCRVCLAWLAWQNPHML 542
Cdd:cd03296 81 QHyalfrhmtVFDNVAFGLR-VKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-AQLSGGQRQRVALARALAVEPKVL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564345351 543 FLDEPTNHLDIETIDALADAINEFEGGM----MLVSHDFRLIQQVAQEIWVCEKQTI 595
Cdd:cd03296 159 LLDEPFGALDAKVRKELRRWLRRLHDELhvttVFVTHDQEEALEVADRVVVMNKGRI 215
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
424-597 |
8.30e-04 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 42.46 E-value: 8.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 424 IDLDTRV----ALVGPNGAGKSTLLKLLTGELLPTDGMI----RKHSHVK--------IGRYHQHL--------QEQLDL 479
Cdd:PRK09700 24 VNLTVYPgeihALLGENGAGKSTLMKVLSGIHEPTKGTItinnINYNKLDhklaaqlgIGIIYQELsvideltvLENLYI 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 480 DLSPLEYMMKC----YPEIKEKEEMrkIIGRYGLtgkqQVSP---IRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLD 552
Cdd:PRK09700 104 GRHLTKKVCGVniidWREMRVRAAM--MLLRVGL----KVDLdekVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLT 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 564345351 553 IETIDALADAINEFEG---GMMLVSHDFRLIQQvaqeiwVCEKQTITK 597
Cdd:PRK09700 178 NKEVDYLFLIMNQLRKegtAIVYISHKLAEIRR------ICDRYTVMK 219
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
213-264 |
8.43e-04 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 42.46 E-value: 8.43e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 564345351 213 SRILHGLGFTPAMQrKKLKDFSGGWRMRVALARALfIRPF-MLLLDEPTNHLD 264
Cdd:COG1245 437 TEIIKPLGLEKLLD-KNVKDLSGGELQRVAIAACL-SRDAdLYLLDEPSAHLD 487
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
423-582 |
9.23e-04 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 41.01 E-value: 9.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 423 GIDLDTRVA----LVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHvKIGRYHQH----LQEQLDLDLSPLEYMMK----- 489
Cdd:PRK10908 20 GVTFHMRPGemafLTGHSGAGKSTLLKLICGIERPSAGKIWFSGH-DITRLKNRevpfLRRQIGMIFQDHHLLMDrtvyd 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 490 --CYPEI---KEKEEMRKIIG----RYGLTGKQQVSPIRnLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDietiDALA 560
Cdd:PRK10908 99 nvAIPLIiagASGDDIRRRVSaaldKVGLLDKAKNFPIQ-LSGGEQQRVGIARAVVNKPAVLLADEPTGNLD----DALS 173
|
170 180
....*....|....*....|....*....
gi 564345351 561 DAI-------NEFEGGMMLVSHDFRLIQQ 582
Cdd:PRK10908 174 EGIlrlfeefNRVGVTVLMATHDIGLISR 202
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
234-304 |
1.03e-03 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 40.92 E-value: 1.03e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564345351 234 SGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEE-----ELKtFKRILVLVSHSQDFLNgVCTNIIHMHN 304
Cdd:cd03250 129 SGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFEncilgLLL-NNKTRILVTHQLQLLP-HADQIVVLDN 202
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
105-442 |
1.09e-03 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 41.92 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 105 LSDTK------LELNSGRRYGLIGLNGIGKSMLLSAV--------GKREVPIpEHI------DIYHLTREMPPSDKTPLQ 164
Cdd:PRK10938 13 LSDTKtlqlpsLTLNAGDSWAFVGANGSGKSALARALagelpllsGERQSQF-SHItrlsfeQLQKLVSDEWQRNNTDML 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 165 CVMEVDTERAMleREAERLAHEDAE-CEKLMELyerleeldadkaemrasrilhgLGFTPAMQRKkLKDFSGGWRMRVAL 243
Cdd:PRK10938 92 SPGEDDTGRTT--AEIIQDEVKDPArCEQLAQQ----------------------FGITALLDRR-FKYLSTGETRKTLL 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 244 ARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKR---ILVLVshsqdfLNgvctniihmhnkklkyytgnydqyvkt 320
Cdd:PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQsgiTLVLV------LN--------------------------- 193
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 321 rleleenqmkRFhweqDQIAHMKNYIARFGhgSAKLARQAqSKEKTLQKMMASGL--TERVVsDKTLSFYFPPCGK--IP 396
Cdd:PRK10938 194 ----------RF----DEIPDFVQFAGVLA--DCTLAETG-EREEILQQALVAQLahSEQLE-GVQLPEPDEPSARhaLP 255
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 564345351 397 P--PVIMVQNVSFKYTkDGPcIYNNLEFGIDLDTRVALVGPNGAGKST 442
Cdd:PRK10938 256 AnePRIVLNNGVVSYN-DRP-ILHNLSWQVNPGEHWQIVGPNGAGKST 301
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
230-352 |
1.17e-03 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 41.80 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 230 LKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLD---LDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKK 306
Cdd:PRK13545 141 VKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDqtfTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQ 220
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 564345351 307 LKYY------TGNYDQYVKTRLELEENQMKRFHWEQdqiahmknyIARFGHG 352
Cdd:PRK13545 221 VKEYgdikevVDHYDEFLKKYNQMSVEERKDFREEQ---------ISQFQHG 263
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
230-278 |
1.17e-03 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 41.79 E-value: 1.17e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 564345351 230 LKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTF 278
Cdd:PLN03211 204 IRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSL 252
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
402-547 |
1.19e-03 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 40.99 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 402 VQNVSFKYTKDgpCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRkHSHVKIGRYHQHLQEQLDL-- 479
Cdd:cd03218 3 AENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL-LDGQDITKLPMHKRARLGIgy 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 480 ---------DLS-------PLEYMMKCYPEIKEKEEmrkiigryGLTGKQQVSPIRN-----LSDGQKCRVCLAWLAWQN 538
Cdd:cd03218 80 lpqeasifrKLTveenilaVLEIRGLSKKEREEKLE--------ELLEEFHITHLRKskassLSGGERRRVEIARALATN 151
|
....*....
gi 564345351 539 PHMLFLDEP 547
Cdd:cd03218 152 PKFLLLDEP 160
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
399-577 |
1.19e-03 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 41.23 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 399 VIMVQNVSFKYTKDGPC-IYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSH-----------VKI 466
Cdd:PRK13642 4 ILEVENLVFKYEKESDVnQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGElltaenvwnlrRKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 467 GRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGK----QQVSPIRnLSDGQKCRVCLAWLAWQNPHML 542
Cdd:PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNmldfKTREPAR-LSGGQKQRVAVAGIIALRPEII 162
|
170 180 190
....*....|....*....|....*....|....*....
gi 564345351 543 FLDEPTNHLD----IETIDALADAINEFEGGMMLVSHDF 577
Cdd:PRK13642 163 ILDESTSMLDptgrQEIMRVIHEIKEKYQLTVLSITHDL 201
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
203-264 |
1.29e-03 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 40.94 E-value: 1.29e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564345351 203 LDADKAEMRASRILHGLGFTPAMQRKKlKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:PRK13652 109 LDEETVAHRVSSALHMLGLEELRDRVP-HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLD 169
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
399-576 |
1.33e-03 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 41.26 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 399 VIMVQNVSFKYTKDGP-CIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHV-----------KI 466
Cdd:PRK13650 4 IIEVKNLTFKYKEDQEkYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLlteenvwdirhKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 467 GRYHQHLQEQL-------DLDLSpLEYMMKCYPEIKEK-EEMRKIIGRYGLTGKQqvsPIRnLSDGQKCRVCLAWLAWQN 538
Cdd:PRK13650 84 GMVFQNPDNQFvgatvedDVAFG-LENKGIPHEEMKERvNEALELVGMQDFKERE---PAR-LSGGQKQRVAIAGAVAMR 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 564345351 539 PHMLFLDEPTNHLD-------IETIDALADainefEGGMMLVS--HD 576
Cdd:PRK13650 159 PKIIILDEATSMLDpegrlelIKTIKGIRD-----DYQMTVISitHD 200
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
90-133 |
1.34e-03 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 42.03 E-value: 1.34e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 564345351 90 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLS 133
Cdd:NF033858 2 ARLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLS 45
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
234-264 |
1.37e-03 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 1.37e-03
10 20 30
....*....|....*....|....*....|.
gi 564345351 234 SGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:cd03253 139 SGGEKQRVAIARAILKNPPILLLDEATSALD 169
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
101-264 |
1.38e-03 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 40.63 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 101 GQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHI-----DIYHL-TREMPPSDKtplQCVMEVDTERA 174
Cdd:PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIwfsghDITRLkNREVPFLRR---QIGMIFQDHHL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 175 MLEREAErlaheDAECEKLMelyerLEELDADKAEMRASRILHGLGFTpamqrKKLKDF----SGGWRMRVALARALFIR 250
Cdd:PRK10908 91 LMDRTVY-----DNVAIPLI-----IAGASGDDIRRRVSAALDKVGLL-----DKAKNFpiqlSGGEQQRVGIARAVVNK 155
|
170
....*....|....
gi 564345351 251 PFMLLLDEPTNHLD 264
Cdd:PRK10908 156 PAVLLADEPTGNLD 169
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
493-576 |
1.75e-03 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 41.31 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 493 EIKEKEEMRKIIGRygltgkqqvsPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEF-EGG-- 569
Cdd:COG1245 195 ELAEKLGLENILDR----------DISELSGGELQRVAIAAALLRDADFYFFDEPSSYLDIYQRLNVARLIRELaEEGky 264
|
....*..
gi 564345351 570 MMLVSHD 576
Cdd:COG1245 265 VLVVEHD 271
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
234-260 |
1.78e-03 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 40.35 E-value: 1.78e-03
10 20
....*....|....*....|....*..
gi 564345351 234 SGGWRMRVALARALFIRPFMLLLDEPT 260
Cdd:COG0410 138 SGGEQQMLAIGRALMSRPKLLLLDEPS 164
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
516-575 |
2.27e-03 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 40.28 E-value: 2.27e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564345351 516 SPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGGM--MLVSH 575
Cdd:PRK14247 142 APAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMtiVLVTH 203
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
229-288 |
2.49e-03 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 40.02 E-value: 2.49e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564345351 229 KLKD----FSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEE---ELKTfKRILVLVSHS 288
Cdd:COG1117 147 RLKKsalgLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEElilELKK-DYTIVIVTHN 212
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
398-619 |
2.59e-03 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 40.84 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 398 PVIMVQNVSFKYTKDGP--CIYNNLEFGIDLDTRVALVGPNGAGKS-TLLKLLTGELLP----TDGMIRKHS-------- 462
Cdd:PRK15134 4 PLLAIENLSVAFRQQQTvrTVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLPSPpvvyPSGDIRFHGesllhase 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 463 ----HVKIGRYHQHLQEQLdLDLSPLEYMMKCYPEIKEKEE-MRKIIGRYGLTGKQQVSPIRN-----------LSDGQK 526
Cdd:PRK15134 84 qtlrGVRGNKIAMIFQEPM-VSLNPLHTLEKQLYEVLSLHRgMRREAARGEILNCLDRVGIRQaakrltdyphqLSGGER 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 527 CRVCLAWLAWQNPHMLFLDEPTNHLDIeTIDA-----LADAINEFEGGMMLVSHDFRLIQQVAQEIWV-----CEKQTIT 596
Cdd:PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDV-SVQAqilqlLRELQQELNMGLLFITHNLSIVRKLADRVAVmqngrCVEQNRA 241
|
250 260
....*....|....*....|....
gi 564345351 597 KwpgDILAYKEH-LKSKLVDEEPQ 619
Cdd:PRK15134 242 A---TLFSAPTHpYTQKLLNSEPS 262
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
206-289 |
2.60e-03 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 40.60 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 206 DKAEMRAsRILHG---LGFTPAMQRKKlKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRIL 282
Cdd:PRK11650 107 PKAEIEE-RVAEAariLELEPLLDRKP-RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRL 184
|
90
....*....|.
gi 564345351 283 ----VLVSHSQ 289
Cdd:PRK11650 185 kttsLYVTHDQ 195
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
204-264 |
2.75e-03 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 40.71 E-value: 2.75e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564345351 204 DADKAEMR-ASRILHGLGFtpaMQRKKLK----------DFSGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:PRK13657 435 DATDEEMRaAAERAQAHDF---IERKPDGydtvvgergrQLSGGERQRLAIARALLKDPPILILDEATSALD 503
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
224-264 |
2.87e-03 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 40.00 E-value: 2.87e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 564345351 224 AMQRKKLKDF--------SGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:PRK13635 124 ALRQVGMEDFlnrephrlSGGQKQRVAIAGVLALQPDIIILDEATSMLD 172
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
390-576 |
2.98e-03 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 40.20 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 390 PPCGKIPPPVIMVQNVSFKYtkDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIrkhshvkigry 469
Cdd:PRK11607 10 AKTRKALTPLLEIRNLTKSF--DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI----------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 470 hqhlqeQLD-LDLS-------PLEYMMKCYP-----------------------EIKEK-EEMRKIIGRYGLTGKQQvsp 517
Cdd:PRK11607 77 ------MLDgVDLShvppyqrPINMMFQSYAlfphmtveqniafglkqdklpkaEIASRvNEMLGLVHMQEFAKRKP--- 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564345351 518 iRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDAL----ADAINEFEGGMMLVSHD 576
Cdd:PRK11607 148 -HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMqlevVDILERVGVTCVMVTHD 209
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
466-576 |
3.00e-03 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 40.07 E-value: 3.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 466 IGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQqvsPIRNLSDGQKcRV-CLAWLAWQNPH---M 541
Cdd:pfam13304 185 LQRLVRGLKLADLNLSDLGEGIEKSLLVDDRLRERGLILLENGGGGEL---PAFELSDGTK-RLlALLAALLSALPkggL 260
|
90 100 110
....*....|....*....|....*....|....*...
gi 564345351 542 LFLDEPTNHLDIETIDALADAINEFEGG---MMLVSHD 576
Cdd:pfam13304 261 LLIDEPESGLHPKLLRRLLELLKELSRNgaqLILTTHS 298
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
416-555 |
3.17e-03 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 40.66 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 416 IYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIrKHSHvKIGRYHQ-------HLQEQLDLDLSPLEY-- 486
Cdd:TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI-KHSG-RISFSPQtswimpgTIKDNIIFGLSYDEYry 518
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564345351 487 ---MMKCYPE---IKEKEEMRKIIGRYGLTgkqqvspirnLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIET 555
Cdd:TIGR01271 519 tsvIKACQLEediALFPEKDKTVLGEGGIT----------LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT 583
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
233-287 |
3.17e-03 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 40.78 E-value: 3.17e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 564345351 233 FSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFK----RILVLVSH 287
Cdd:PTZ00265 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKgnenRITIIIAH 638
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
233-288 |
3.23e-03 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 39.69 E-value: 3.23e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 564345351 233 FSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTF--KRILVLVSHS 288
Cdd:PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLadRLTVIIVTHN 221
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
422-442 |
3.47e-03 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 39.34 E-value: 3.47e-03
10 20
....*....|....*....|....*
gi 564345351 422 FGIDLDTR----VALVGPNGAGKST 442
Cdd:cd03224 17 FGVSLTVPegeiVALLGRNGAGKTT 41
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
400-589 |
3.89e-03 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 40.40 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 400 IMVQNVSFKY-TKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDG-MIRKHSH-----------VKI 466
Cdd:PTZ00265 383 IQFKNVRFHYdTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGdIIINDSHnlkdinlkwwrSKI 462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 467 GRYHQ------------------------HLQEQLD------------------------------LDLSPLEYMMKCYP 492
Cdd:PTZ00265 463 GVVSQdpllfsnsiknnikyslyslkdleALSNYYNedgndsqenknkrnscrakcagdlndmsntTDSNELIEMRKNYQ 542
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 493 EIKEKE----EMRKIIGRY--GLTGKQQV---SPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAI 563
Cdd:PTZ00265 543 TIKDSEvvdvSKKVLIHDFvsALPDKYETlvgSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTI 622
|
250 260 270
....*....|....*....|....*....|
gi 564345351 564 NEFEGG----MMLVSHDFRLIqQVAQEIWV 589
Cdd:PTZ00265 623 NNLKGNenriTIIIAHRLSTI-RYANTIFV 651
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
200-264 |
3.92e-03 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 39.71 E-value: 3.92e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564345351 200 LEELDADKAEMRaSRILHGLGFTpAMQRKKLKD---FSGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:PRK13650 107 LENKGIPHEEMK-ERVNEALELV-GMQDFKEREparLSGGQKQRVAIAGAVAMRPKIIILDEATSMLD 172
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
521-589 |
4.07e-03 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 39.72 E-value: 4.07e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564345351 521 LSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDI----ETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWV 589
Cdd:PRK11022 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVtiqaQIIELLLELQQKENMALVLITHDLALVAEAAHKIIV 226
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
521-589 |
4.13e-03 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 40.05 E-value: 4.13e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564345351 521 LSDGQKCRVCLAW-LAwQNPHMLFLDEPTNHLDIeTIDA-----LADAINEFEGGMMLVSHDFRLIQQVAQEIWV 589
Cdd:COG4172 157 LSGGQRQRVMIAMaLA-NEPDLLIADEPTTALDV-TVQAqildlLKDLQRELGMALLLITHDLGVVRRFADRVAV 229
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
230-264 |
4.28e-03 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 40.19 E-value: 4.28e-03
10 20 30
....*....|....*....|....*....|....*
gi 564345351 230 LKdFSGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:COG5265 493 LK-LSGGEKQRVAIARTLLKNPPILIFDEATSALD 526
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
92-293 |
4.47e-03 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 39.28 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 92 IINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAV-GkrevpipehIDIYHLTR-----------EMPPsd 159
Cdd:COG0396 3 IKNLHVSVEGKEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLmG---------HPKYEVTSgsilldgedilELSP-- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 160 ktplqcvmevdTERA-----------------------MLEREAERLAHEDAEcEKLMELYERLEELDADKaEMrASRIL 216
Cdd:COG0396 72 -----------DERAragiflafqypveipgvsvsnflRTALNARRGEELSAR-EFLKLLKEKMKELGLDE-DF-LDRYV 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 217 HGlgftpamqrkklkDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDAcvwLE------EELKTFKRILVLVSHSQD 290
Cdd:COG0396 138 NE-------------GFSGGEKKRNEILQMLLLEPKLAILDETDSGLDIDA---LRivaegvNKLRSPDRGILIITHYQR 201
|
...
gi 564345351 291 FLN 293
Cdd:COG0396 202 ILD 204
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
416-555 |
4.70e-03 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 39.45 E-value: 4.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 416 IYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIrKHSHvKIGRYHQ-------HLQEQLDLDLSPLEYMM 488
Cdd:cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI-KHSG-RISFSSQfswimpgTIKENIIFGVSYDEYRY 129
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564345351 489 K-----CYPE---IKEKEEMRKIIGRYGLTgkqqvspirnLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIET 555
Cdd:cd03291 130 KsvvkaCQLEediTKFPEKDNTVLGEGGIT----------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 194
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
206-260 |
4.77e-03 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 40.00 E-value: 4.77e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 564345351 206 DKAEMR--ASRILHGLGFT--PamqRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPT 260
Cdd:COG1129 113 DWRAMRrrARELLARLGLDidP---DTPVGDLSVAQQQLVEIARALSRDARVLILDEPT 168
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
396-576 |
4.83e-03 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 39.70 E-value: 4.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 396 PPPVIMVQNVSFKYtkDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTllklltgeLLPTDGMI----RKHSHVKIGRYH- 470
Cdd:COG3842 2 AMPALELENVSKRY--GDVTALDDVSLSIEPGEFVALLGPSGCGKTTllrmiagfETPDSGRIlldgRDVTGLPPEKRNv 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 471 ----QhlqeqlDLDLSPleYM-----------MKCYP--EIKEK-EEMRKIIgryGLTGKQQVSPiRNLSDGQKCRVCLA 532
Cdd:COG3842 80 gmvfQ------DYALFP--HLtvaenvafglrMRGVPkaEIRARvAELLELV---GLEGLADRYP-HQLSGGQQQRVALA 147
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 564345351 533 -WLAwQNPHMLFLDEPTNHLD----IETIDALADAINEFEGGMMLVSHD 576
Cdd:COG3842 148 rALA-PEPRVLLLDEPLSALDaklrEEMREELRRLQRELGITFIYVTHD 195
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
521-552 |
5.54e-03 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 38.99 E-value: 5.54e-03
10 20 30
....*....|....*....|....*....|..
gi 564345351 521 LSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLD 552
Cdd:PRK14239 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALD 180
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
207-292 |
5.67e-03 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 39.93 E-value: 5.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 207 KAEMRASRILHGLGFTPAMQRKKLKD----FSGGWRMRVALARALFIRPFMLLLDEPTNHLD-------LDACVWLEEEL 275
Cdd:TIGR00957 731 QQVLEACALLPDLEILPSGDRTEIGEkgvnLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDahvgkhiFEHVIGPEGVL 810
|
90
....*....|....*..
gi 564345351 276 KTFKRIlvLVSHSQDFL 292
Cdd:TIGR00957 811 KNKTRI--LVTHGISYL 825
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
404-587 |
5.73e-03 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 39.30 E-value: 5.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 404 NVSFKYTKdgpcIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKH----SHV-----KIGRYHQH-- 472
Cdd:PRK10851 9 KKSFGRTQ----VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHgtdvSRLhardrKVGFVFQHya 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 473 ------LQEQLDLDLSPLEYMMKCYPEIKEKEEMRkiigrygLTGKQQVSPIRN-----LSDGQKCRVCLAWLAWQNPHM 541
Cdd:PRK10851 85 lfrhmtVFDNIAFGLTVLPRRERPNAAAIKAKVTQ-------LLEMVQLAHLADrypaqLSGGQKQRVALARALAVEPQI 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564345351 542 LFLDEPTNHLDIETIDALADAI----NEFEGGMMLVSHDfrliQQVAQEI 587
Cdd:PRK10851 158 LLLDEPFGALDAQVRKELRRWLrqlhEELKFTSVFVTHD----QEEAMEV 203
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
518-552 |
5.81e-03 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 38.79 E-value: 5.81e-03
10 20 30
....*....|....*....|....*....|....*
gi 564345351 518 IRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLD 552
Cdd:cd03234 141 VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
422-442 |
5.86e-03 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 38.81 E-value: 5.86e-03
10 20
....*....|....*....|....*
gi 564345351 422 FGIDLDTR----VALVGPNGAGKST 442
Cdd:COG0410 20 HGVSLEVEegeiVALLGRNGAGKTT 44
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
234-264 |
5.89e-03 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 39.40 E-value: 5.89e-03
10 20 30
....*....|....*....|....*....|.
gi 564345351 234 SGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:PRK11153 142 SGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
396-587 |
6.15e-03 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 38.81 E-value: 6.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 396 PPPVIMVQNVSFKYtkDGPCIYNnlefGIDLDTR----VALVGPNGAGKSTLLKLLTGELLPTDGMI------------- 458
Cdd:COG1127 2 SEPMIEVRNLTKSF--GDRVVLD----GVSLDVPrgeiLAIIGGSGSGKSVLLKLIIGLLRPDSGEIlvdgqditglsek 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 459 -----RKhshvKIGRYHQH----------------LQEQLDLDlspleymmkcypeikeKEEMRKI----IGRYGLTGKQ 513
Cdd:COG1127 76 elyelRR----RIGMLFQGgalfdsltvfenvafpLREHTDLS----------------EAEIRELvlekLELVGLPGAA 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564345351 514 QVSPiRNLSDGQKCRVCLA-WLAwQNPHMLFLDEPTNHLDIETIDALADAINE----FEGGMMLVSHDFRLIQQVAQEI 587
Cdd:COG1127 136 DKMP-SELSGGMRKRVALArALA-LDPEILLYDEPTAGLDPITSAVIDELIRElrdeLGLTSVVVTHDLDSAFAIADRV 212
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
207-264 |
6.35e-03 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 39.06 E-value: 6.35e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 564345351 207 KAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:PRK13631 151 EAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLD 208
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
430-587 |
6.52e-03 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 39.71 E-value: 6.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 430 VALVGPNGAGKSTLLKLLTGELLPTDG-------------------MIRKHSHVKIGRYH--QHLQEQLDLDLsPLEYMM 488
Cdd:PRK10535 37 VAIVGASGSGKSTLMNILGCLDKPTSGtyrvagqdvatldadalaqLRREHFGFIFQRYHllSHLTAAQNVEV-PAVYAG 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564345351 489 KcyPEIKEKEEMRKIIGRYGLTGKQQVSPiRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDI---ETIDALADAINE 565
Cdd:PRK10535 116 L--ERKQRLLRAQELLQRLGLEDRVEYQP-SQLSGGQQQRVSIARALMNGGQVILADEPTGALDShsgEEVMAILHQLRD 192
|
170 180
....*....|....*....|..
gi 564345351 566 FEGGMMLVSHDFRLIQQvAQEI 587
Cdd:PRK10535 193 RGHTVIIVTHDPQVAAQ-AERV 213
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
234-264 |
8.16e-03 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 39.31 E-value: 8.16e-03
10 20 30
....*....|....*....|....*....|.
gi 564345351 234 SGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:TIGR02203 471 SGGQRQRLAIARALLKDAPILILDEATSALD 501
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
211-264 |
9.54e-03 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 38.87 E-value: 9.54e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 564345351 211 RASRILHGLGFTPAMQRK-----KLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLD 264
Cdd:TIGR00955 140 RVDEVLQALGLRKCANTRigvpgRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
224-267 |
9.68e-03 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 39.04 E-value: 9.68e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 564345351 224 AMQRKKLKDF---------SGGWRMRVALARALFIRPFMLLLDEPTNHLDLDA 267
Cdd:TIGR02633 386 AIQRLKVKTAspflpigrlSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGA 438
|
|
| |
