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Conserved domains on  [gi|564342348|ref|XP_006234810|]
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homeobox protein Meis2 isoform X4 [Rattus norvegicus]

Protein Classification

homeobox protein( domain architecture ID 11243274)

homeobox protein is involved in transcriptional regulation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Meis_PKNOX_N pfam16493
N-terminal of Homeobox Meis and PKNOX1; Meis_PKNOX_N is a family found at the N-terminus of ...
 109-193 4.15e-59

N-terminal of Homeobox Meis and PKNOX1; Meis_PKNOX_N is a family found at the N-terminus of Meis, Myeloid ecotropic viral integration site, transcription regulators and PKNOX1 regulators, PBX/knotted 1 homeobox 1, homeobox proteins.


:

Pssm-ID: 465140  Cd Length: 86  Bit Score: 189.09  E-value: 4.15e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564342348  109 GGDVCSSDSFNEDIAVFAKQV-RAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLV 187
Cdd:pfam16493   1 GGDVCSSDSFDEDIAVFAKQIeRAEKPIFSPNPELDNLMIKAIQVLRIHLLELEKVHELCDNFCHRYITCLKGKMPSDLV 80


                  ....*.
gi 564342348  188 IDERDG 193
Cdd:pfam16493  81 LDDREG 86
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 294-332 9.71e-21

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


:

Pssm-ID: 428673  Cd Length: 39  Bit Score: 84.87  E-value: 9.71e-21
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 564342348  294 LFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 332
Cdd:pfam05920   1 LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR 39
PAT1 super family cl37801
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 334-462 6.07e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


The actual alignment was detected with superfamily member pfam09770:

Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 39.25  E-value: 6.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564342348  334 VQPMIDQSNRAGFLLDPSVSQGAAYSPEGQPMGSFVLDGQQH-MGI--RPAGLQSMPGdyVSQGGPVGMGMAQPsytPPQ 410
Cdd:pfam09770 220 QPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHpVTIlqRPQSPQPDPA--QPSIQPQAQQFHQQ---PPP 294

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 564342348  411 MTPHPTQLRHGPPMHSYLPSHPHHPAMMMHGGPPTHPGMTMSAQSPTMLNSV 462
Cdd:pfam09770 295 VPVQPTQILQNPNRLSAARVGYPQNPQPGVQPAPAHQAHRQQGSFGRQAPII 346
 
Name Accession Description Interval E-value
Meis_PKNOX_N pfam16493
N-terminal of Homeobox Meis and PKNOX1; Meis_PKNOX_N is a family found at the N-terminus of ...
 109-193 4.15e-59

N-terminal of Homeobox Meis and PKNOX1; Meis_PKNOX_N is a family found at the N-terminus of Meis, Myeloid ecotropic viral integration site, transcription regulators and PKNOX1 regulators, PBX/knotted 1 homeobox 1, homeobox proteins.


Pssm-ID: 465140  Cd Length: 86  Bit Score: 189.09  E-value: 4.15e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564342348  109 GGDVCSSDSFNEDIAVFAKQV-RAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLV 187
Cdd:pfam16493   1 GGDVCSSDSFDEDIAVFAKQIeRAEKPIFSPNPELDNLMIKAIQVLRIHLLELEKVHELCDNFCHRYITCLKGKMPSDLV 80


                  ....*.
gi 564342348  188 IDERDG 193
Cdd:pfam16493  81 LDDREG 86
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 294-332 9.71e-21

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


Pssm-ID: 428673  Cd Length: 39  Bit Score: 84.87  E-value: 9.71e-21
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 564342348  294 LFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 332
Cdd:pfam05920   1 LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR 39
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 279-332 8.73e-13

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 63.03  E-value: 8.73e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 564342348 279 RGIFPKVATNIMRAWlFQHltHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 332
Cdd:cd00086    4 RTRFTPEQLEELEKE-FEK--NPYPSREEREELAKELGLTERQVKIWFQNRRAK 54
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 279-332 2.94e-12

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 61.50  E-value: 2.94e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 564342348   279 RGIFPKVATNIMRAWlFQHltHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 332
Cdd:smart00389   5 RTSFTPEQLEELEKE-FQK--NPYPSREEREELAKKLGLSERQVKVWFQNRRAK 55
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 334-462 6.07e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 39.25  E-value: 6.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564342348  334 VQPMIDQSNRAGFLLDPSVSQGAAYSPEGQPMGSFVLDGQQH-MGI--RPAGLQSMPGdyVSQGGPVGMGMAQPsytPPQ 410
Cdd:pfam09770 220 QPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHpVTIlqRPQSPQPDPA--QPSIQPQAQQFHQQ---PPP 294

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 564342348  411 MTPHPTQLRHGPPMHSYLPSHPHHPAMMMHGGPPTHPGMTMSAQSPTMLNSV 462
Cdd:pfam09770 295 VPVQPTQILQNPNRLSAARVGYPQNPQPGVQPAPAHQAHRQQGSFGRQAPII 346
 
Name Accession Description Interval E-value
Meis_PKNOX_N pfam16493
N-terminal of Homeobox Meis and PKNOX1; Meis_PKNOX_N is a family found at the N-terminus of ...
 109-193 4.15e-59

N-terminal of Homeobox Meis and PKNOX1; Meis_PKNOX_N is a family found at the N-terminus of Meis, Myeloid ecotropic viral integration site, transcription regulators and PKNOX1 regulators, PBX/knotted 1 homeobox 1, homeobox proteins.


Pssm-ID: 465140  Cd Length: 86  Bit Score: 189.09  E-value: 4.15e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564342348  109 GGDVCSSDSFNEDIAVFAKQV-RAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLV 187
Cdd:pfam16493   1 GGDVCSSDSFDEDIAVFAKQIeRAEKPIFSPNPELDNLMIKAIQVLRIHLLELEKVHELCDNFCHRYITCLKGKMPSDLV 80


                  ....*.
gi 564342348  188 IDERDG 193
Cdd:pfam16493  81 LDDREG 86
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 294-332 9.71e-21

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


Pssm-ID: 428673  Cd Length: 39  Bit Score: 84.87  E-value: 9.71e-21
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 564342348  294 LFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 332
Cdd:pfam05920   1 LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR 39
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 279-332 8.73e-13

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 63.03  E-value: 8.73e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 564342348 279 RGIFPKVATNIMRAWlFQHltHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 332
Cdd:cd00086    4 RTRFTPEQLEELEKE-FEK--NPYPSREEREELAKELGLTERQVKIWFQNRRAK 54
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 279-332 2.94e-12

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 61.50  E-value: 2.94e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 564342348   279 RGIFPKVATNIMRAWlFQHltHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 332
Cdd:smart00389   5 RTSFTPEQLEELEKE-FQK--NPYPSREEREELAKKLGLSERQVKVWFQNRRAK 55
Homeodomain pfam00046
Homeodomain;
294-332 1.11e-05

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 42.87  E-value: 1.11e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 564342348  294 LFQHltHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 332
Cdd:pfam00046  18 EFQE--NPYPSAEEREELAAQLGLTERQVKVWFQNRRAK 54
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 334-462 6.07e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 39.25  E-value: 6.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564342348  334 VQPMIDQSNRAGFLLDPSVSQGAAYSPEGQPMGSFVLDGQQH-MGI--RPAGLQSMPGdyVSQGGPVGMGMAQPsytPPQ 410
Cdd:pfam09770 220 QPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHpVTIlqRPQSPQPDPA--QPSIQPQAQQFHQQ---PPP 294

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 564342348  411 MTPHPTQLRHGPPMHSYLPSHPHHPAMMMHGGPPTHPGMTMSAQSPTMLNSV 462
Cdd:pfam09770 295 VPVQPTQILQNPNRLSAARVGYPQNPQPGVQPAPAHQAHRQQGSFGRQAPII 346
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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