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Conserved domains on  [gi|564341099|ref|XP_006234316|]
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nucleoporin-62 C-terminal-like protein isoform X1 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Nsp1_C super family cl04917
Nsp1-like C-terminal region; This family probably forms a coiled-coil. This important region ...
 66-180 1.01e-37

Nsp1-like C-terminal region; This family probably forms a coiled-coil. This important region of Nsp1 is involved in binding Nup82.


The actual alignment was detected with superfamily member pfam05064:

Pssm-ID: 461540 [Multi-domain]  Cd Length: 114  Bit Score: 128.97  E-value: 1.01e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341099   66 PSTMTVNsIVTPVMTYGPLDSMVNNWHYQLQEQEKHYFYQAHQFNVWNHALIETSNEIALLHNEVERVKRDQSRLEQELD 145
Cdd:pfam05064   1 LSAKPVE-PPPSALKNKTLDDIINKWSTQLSKQSKEFETQAAKVNEWDRVLVENGDKISKLYSETLEAEQDQNRIDQQLD 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 564341099  146 LILLQQKELEHTLAPIEEFLKEQNGPLKLLYVNKE 180
Cdd:pfam05064  80 YVESQQDELESLLDNYEEQLEELLGDITSQNSDEE 114
 
Name Accession Description Interval E-value
Nsp1_C pfam05064
Nsp1-like C-terminal region; This family probably forms a coiled-coil. This important region ...
 66-180 1.01e-37

Nsp1-like C-terminal region; This family probably forms a coiled-coil. This important region of Nsp1 is involved in binding Nup82.


Pssm-ID: 461540 [Multi-domain]  Cd Length: 114  Bit Score: 128.97  E-value: 1.01e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341099   66 PSTMTVNsIVTPVMTYGPLDSMVNNWHYQLQEQEKHYFYQAHQFNVWNHALIETSNEIALLHNEVERVKRDQSRLEQELD 145
Cdd:pfam05064   1 LSAKPVE-PPPSALKNKTLDDIINKWSTQLSKQSKEFETQAAKVNEWDRVLVENGDKISKLYSETLEAEQDQNRIDQQLD 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 564341099  146 LILLQQKELEHTLAPIEEFLKEQNGPLKLLYVNKE 180
Cdd:pfam05064  80 YVESQQDELESLLDNYEEQLEELLGDITSQNSDEE 114
 
Name Accession Description Interval E-value
Nsp1_C pfam05064
Nsp1-like C-terminal region; This family probably forms a coiled-coil. This important region ...
 66-180 1.01e-37

Nsp1-like C-terminal region; This family probably forms a coiled-coil. This important region of Nsp1 is involved in binding Nup82.


Pssm-ID: 461540 [Multi-domain]  Cd Length: 114  Bit Score: 128.97  E-value: 1.01e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341099   66 PSTMTVNsIVTPVMTYGPLDSMVNNWHYQLQEQEKHYFYQAHQFNVWNHALIETSNEIALLHNEVERVKRDQSRLEQELD 145
Cdd:pfam05064   1 LSAKPVE-PPPSALKNKTLDDIINKWSTQLSKQSKEFETQAAKVNEWDRVLVENGDKISKLYSETLEAEQDQNRIDQQLD 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 564341099  146 LILLQQKELEHTLAPIEEFLKEQNGPLKLLYVNKE 180
Cdd:pfam05064  80 YVESQQDELESLLDNYEEQLEELLGDITSQNSDEE 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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