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Conserved domains on  [gi|564330889|ref|XP_006230275|]
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leukosialin isoform X1 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Chi1 super family cl43877
Chitinase [Carbohydrate transport and metabolism];
39-240 5.01e-03

Chitinase [Carbohydrate transport and metabolism];


The actual alignment was detected with superfamily member COG3469:

Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 38.97  E-value: 5.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564330889  39 SPSTSEALSTYSSIATVPVTEDPKESISPWGQTTAPASSiPLGTPELSSFFFTSAGASGNTPVPELTTSQEVSTEASLVL 118
Cdd:COG3469   19 AVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSA-GSGTGTTAASSTAATSSTTSTTATATAAAAAATSTSATLV 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564330889 119 FPKSSGVASDPPVTITNPATSSAVASTSLETFKGTSAPPVTVTSSTMTSGPFVATTVSSETSGPPVTMATGSLGPSKETH 198
Cdd:COG3469   98 ATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTTTSTTTTTTSAST 177
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 564330889 199 GLSATIATSSGESSSVAGGTPVfstkiSTTSTPNPITTVPPR 240
Cdd:COG3469  178 TPSATTTATATTASGATTPSAT-----TTATTTGPPTPGLPK 214
 
Name Accession Description Interval E-value
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
39-240 5.01e-03

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 38.97  E-value: 5.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564330889  39 SPSTSEALSTYSSIATVPVTEDPKESISPWGQTTAPASSiPLGTPELSSFFFTSAGASGNTPVPELTTSQEVSTEASLVL 118
Cdd:COG3469   19 AVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSA-GSGTGTTAASSTAATSSTTSTTATATAAAAAATSTSATLV 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564330889 119 FPKSSGVASDPPVTITNPATSSAVASTSLETFKGTSAPPVTVTSSTMTSGPFVATTVSSETSGPPVTMATGSLGPSKETH 198
Cdd:COG3469   98 ATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTTTSTTTTTTSAST 177
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 564330889 199 GLSATIATSSGESSSVAGGTPVfstkiSTTSTPNPITTVPPR 240
Cdd:COG3469  178 TPSATTTATATTASGATTPSAT-----TTATTTGPPTPGLPK 214
 
Name Accession Description Interval E-value
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
39-240 5.01e-03

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 38.97  E-value: 5.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564330889  39 SPSTSEALSTYSSIATVPVTEDPKESISPWGQTTAPASSiPLGTPELSSFFFTSAGASGNTPVPELTTSQEVSTEASLVL 118
Cdd:COG3469   19 AVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSA-GSGTGTTAASSTAATSSTTSTTATATAAAAAATSTSATLV 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564330889 119 FPKSSGVASDPPVTITNPATSSAVASTSLETFKGTSAPPVTVTSSTMTSGPFVATTVSSETSGPPVTMATGSLGPSKETH 198
Cdd:COG3469   98 ATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTTTSTTTTTTSAST 177
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 564330889 199 GLSATIATSSGESSSVAGGTPVfstkiSTTSTPNPITTVPPR 240
Cdd:COG3469  178 TPSATTTATATTASGATTPSAT-----TTATTTGPPTPGLPK 214
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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