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Conserved domains on  [gi|564324996|ref|XP_006227863|]
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centrosomal protein of 72 kDa isoform X2 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PPP1R42 super family cl42388
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 42-144 1.07e-13

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


The actual alignment was detected with superfamily member cd21340:

Pssm-ID: 455733 [Multi-domain]  Cd Length: 220  Bit Score: 70.59  E-value: 1.07e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564324996  42 ITHLGNSLMHLtalkslDLSRNSLVSLEGIQYLVSLESLNLYYNCISSLAEVFR-LHTLMELQDVDFRLNPVVKNeSDYR 120
Cdd:cd21340  115 LAALSNSLRVL------NISGNNIDSLEPLAPLRNLEQLDASNNQISDLEELLDlLSSWPSLRELDLTGNPVCKK-PKYR 187

                         90       100
                 ....*....|....*....|....
gi 564324996 121 LFVVHMLPKLRQLDDRPVRESERK 144
Cdd:cd21340  188 DKIILASKSLEVLDGKEITDTERQ 211
Filament super family cl25641
Intermediate filament protein;
386-539 1.08e-03

Intermediate filament protein;


The actual alignment was detected with superfamily member pfam00038:

Pssm-ID: 459643 [Multi-domain]  Cd Length: 313  Bit Score: 41.44  E-value: 1.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564324996  386 SALEKegVGYLSLENKALQSRLTEQHQQYAAAVTKVT----TELNNTKRELDTLRQHLDNSLEENDNLKSLLYNVKQevK 461
Cdd:pfam00038  15 SYIDK--VRFLEQQNKLLETKISELRQKKGAEPSRLYslyeKEIEDLRRQLDTLTVERARLQLELDNLRLAAEDFRQ--K 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564324996  462 HADTSG-----------------ALSLQITGLQTSMKQLSGEVMELKQHvaHYDKIQELTQMLQESHsSLVSTNEHLLQE 524
Cdd:pfam00038  91 YEDELNlrtsaendlvglrkdldEATLARVDLEAKIESLKEELAFLKKN--HEEEVRELQAQVSDTQ-VNVEMDAARKLD 167

                         170
                  ....*....|....*
gi 564324996  525 LSRARAQHRAEVEQM 539
Cdd:pfam00038 168 LTSALAEIRAQYEEI 182
 
Name Accession Description Interval E-value
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 42-144 1.07e-13

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 70.59  E-value: 1.07e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564324996  42 ITHLGNSLMHLtalkslDLSRNSLVSLEGIQYLVSLESLNLYYNCISSLAEVFR-LHTLMELQDVDFRLNPVVKNeSDYR 120
Cdd:cd21340  115 LAALSNSLRVL------NISGNNIDSLEPLAPLRNLEQLDASNNQISDLEELLDlLSSWPSLRELDLTGNPVCKK-PKYR 187

                         90       100
                 ....*....|....*....|....
gi 564324996 121 LFVVHMLPKLRQLDDRPVRESERK 144
Cdd:cd21340  188 DKIILASKSLEVLDGKEITDTERQ 211
LRR_9 pfam14580
Leucine-rich repeat;
51-150 1.43e-11

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 63.24  E-value: 1.43e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564324996   51 HLTALKSLDLSRNSLVSL-EGI-QYLVSLESLNLYYNCISSLAEVFRLHTLMELQDVDFRLNPVVkNESDYRLFVVHMLP 128
Cdd:pfam14580  62 LLRRLKTLLLNNNRICRIgEGLgEALPNLTELILTNNNLQELGDLDPLASLKKLTFLSLLRNPVT-NKPHYRLYVIYKVP 140

                          90       100
                  ....*....|....*....|..
gi 564324996  129 KLRQLDDRPVRESERKASQLHF 150
Cdd:pfam14580 141 QLRLLDFRKVKQKERQAAEKMF 162
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
25-112 8.42e-10

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 61.10  E-value: 8.42e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564324996  25 DLAELRSLSIPGTyqeKITHLGNSLMHLTALKSLDLSRNSLVSLEGIQYLVSLESLNLYYNCISSLAEVFRLHtlmELQD 104
Cdd:COG4886  203 NLTNLEELDLSGN---QLTDLPEPLANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLT---NLKT 276


                 ....*...
gi 564324996 105 VDFRLNPV 112
Cdd:COG4886  277 LDLSNNQL 284
Filament pfam00038
Intermediate filament protein;
386-539 1.08e-03

Intermediate filament protein;


Pssm-ID: 459643 [Multi-domain]  Cd Length: 313  Bit Score: 41.44  E-value: 1.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564324996  386 SALEKegVGYLSLENKALQSRLTEQHQQYAAAVTKVT----TELNNTKRELDTLRQHLDNSLEENDNLKSLLYNVKQevK 461
Cdd:pfam00038  15 SYIDK--VRFLEQQNKLLETKISELRQKKGAEPSRLYslyeKEIEDLRRQLDTLTVERARLQLELDNLRLAAEDFRQ--K 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564324996  462 HADTSG-----------------ALSLQITGLQTSMKQLSGEVMELKQHvaHYDKIQELTQMLQESHsSLVSTNEHLLQE 524
Cdd:pfam00038  91 YEDELNlrtsaendlvglrkdldEATLARVDLEAKIESLKEELAFLKKN--HEEEVRELQAQVSDTQ-VNVEMDAARKLD 167

                         170
                  ....*....|....*
gi 564324996  525 LSRARAQHRAEVEQM 539
Cdd:pfam00038 168 LTSALAEIRAQYEEI 182
LRRcap smart00446
occurring C-terminal to leucine-rich repeats; A motif occurring C-terminal to leucine-rich ...
 117-134 1.11e-03

occurring C-terminal to leucine-rich repeats; A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.


Pssm-ID: 197729  Cd Length: 19  Bit Score: 36.52  E-value: 1.11e-03
                           10
                   ....*....|....*...
gi 564324996   117 SDYRLFVVHMLPKLRQLD 134
Cdd:smart00446   2 AHYREKVIELLPQLRKLD 19
46 PHA02562
endonuclease subunit; Provisional
 399-551 7.61e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 39.23  E-value: 7.61e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564324996 399 ENKALQSRLTEQ-------HQQYAAAVTKVTTELNNTKRELDTLrQHLDNSLEENDNLKSLLYNVKQEVkhaDTSGALSL 471
Cdd:PHA02562 231 TIKAEIEELTDEllnlvmdIEDPSAALNKLNTAAAKIKSKIEQF-QKVIKMYEKGGVCPTCTQQISEGP---DRITKIKD 306

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564324996 472 QITGLQTSMKQLSGEVMELKQHVAHYD----KIQELTQMLQESHSSLVSTN------EHLLQELSRARAQHRAEVEQMHW 541
Cdd:PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNeqskKLLELKNKISTNKQSLITLVdkakkvKAAIEELQAEFVDNAEELAKLQD 386

                        170
                 ....*....|
gi 564324996 542 SFQELKKTTA 551
Cdd:PHA02562 387 ELDKIVKTKS 396
 
Name Accession Description Interval E-value
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 42-144 1.07e-13

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 70.59  E-value: 1.07e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564324996  42 ITHLGNSLMHLtalkslDLSRNSLVSLEGIQYLVSLESLNLYYNCISSLAEVFR-LHTLMELQDVDFRLNPVVKNeSDYR 120
Cdd:cd21340  115 LAALSNSLRVL------NISGNNIDSLEPLAPLRNLEQLDASNNQISDLEELLDlLSSWPSLRELDLTGNPVCKK-PKYR 187

                         90       100
                 ....*....|....*....|....
gi 564324996 121 LFVVHMLPKLRQLDDRPVRESERK 144
Cdd:cd21340  188 DKIILASKSLEVLDGKEITDTERQ 211
LRR_9 pfam14580
Leucine-rich repeat;
51-150 1.43e-11

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 63.24  E-value: 1.43e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564324996   51 HLTALKSLDLSRNSLVSL-EGI-QYLVSLESLNLYYNCISSLAEVFRLHTLMELQDVDFRLNPVVkNESDYRLFVVHMLP 128
Cdd:pfam14580  62 LLRRLKTLLLNNNRICRIgEGLgEALPNLTELILTNNNLQELGDLDPLASLKKLTFLSLLRNPVT-NKPHYRLYVIYKVP 140

                          90       100
                  ....*....|....*....|..
gi 564324996  129 KLRQLDDRPVRESERKASQLHF 150
Cdd:pfam14580 141 QLRLLDFRKVKQKERQAAEKMF 162
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
25-112 8.42e-10

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 61.10  E-value: 8.42e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564324996  25 DLAELRSLSIPGTyqeKITHLGNSLMHLTALKSLDLSRNSLVSLEGIQYLVSLESLNLYYNCISSLAEVFRLHtlmELQD 104
Cdd:COG4886  203 NLTNLEELDLSGN---QLTDLPEPLANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLT---NLKT 276


                 ....*...
gi 564324996 105 VDFRLNPV 112
Cdd:COG4886  277 LDLSNNQL 284
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
25-94 6.73e-09

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 58.02  E-value: 6.73e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564324996  25 DLAELRSLSIPGTyqeKITHLGNSLMHLTALKSLDLSRNSLVSL-EGIQYLVSLESLNLYYNCISSLAEVF 94
Cdd:COG4886  134 NLTNLKELDLSNN---QLTDLPEPLGNLTNLKSLDLSNNQLTDLpEELGNLTNLKELDLSNNQITDLPEPL 201
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
25-102 7.16e-09

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 58.02  E-value: 7.16e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564324996  25 DLAELRSLSIPGTyqeKITHLGNSLMHLTALKSLDLSRNSLVSL-EGIQYLVSLESLNLYYNCISSLAEVFRLHTLMEL 102
Cdd:COG4886  180 NLTNLKELDLSNN---QITDLPEPLGNLTNLEELDLSGNQLTDLpEPLANLTNLETLDLSNNQLTDLPELGNLTNLEEL 255
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
18-102 2.82e-08

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 56.10  E-value: 2.82e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564324996  18 SGLGPHRDLAELRSLSIPGTyqeKITHLGNSLMHLTALKSLDLSRNSLVSL-EGIQYLVSLESLNLYYNCISSL-AEVFR 95
Cdd:COG4886  104 SGNEELSNLTNLESLDLSGN---QLTDLPEELANLTNLKELDLSNNQLTDLpEPLGNLTNLKSLDLSNNQLTDLpEELGN 180


                 ....*..
gi 564324996  96 LHTLMEL 102
Cdd:COG4886  181 LTNLKEL 187
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
25-90 1.26e-04

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 44.54  E-value: 1.26e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564324996  25 DLAELRSLSIPGTyqeKITHLGnSLMHLTALKSLDLSRNSLVSLEGIQYLVSLESLNLYYNCISSL 90
Cdd:COG4886  226 NLTNLETLDLSNN---QLTDLP-ELGNLTNLEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTDL 287
LRR_8 pfam13855
Leucine rich repeat;
28-85 6.04e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 38.27  E-value: 6.04e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564324996   28 ELRSLSIPGTYqekITHLGN-SLMHLTALKSLDLSRNSLVSLEG--IQYLVSLESLNLYYN 85
Cdd:pfam13855   2 NLRSLDLSNNR---LTSLDDgAFKGLSNLKVLDLSNNLLTTLSPgaFSGLPSLRYLDLSGN 59
Filament pfam00038
Intermediate filament protein;
386-539 1.08e-03

Intermediate filament protein;


Pssm-ID: 459643 [Multi-domain]  Cd Length: 313  Bit Score: 41.44  E-value: 1.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564324996  386 SALEKegVGYLSLENKALQSRLTEQHQQYAAAVTKVT----TELNNTKRELDTLRQHLDNSLEENDNLKSLLYNVKQevK 461
Cdd:pfam00038  15 SYIDK--VRFLEQQNKLLETKISELRQKKGAEPSRLYslyeKEIEDLRRQLDTLTVERARLQLELDNLRLAAEDFRQ--K 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564324996  462 HADTSG-----------------ALSLQITGLQTSMKQLSGEVMELKQHvaHYDKIQELTQMLQESHsSLVSTNEHLLQE 524
Cdd:pfam00038  91 YEDELNlrtsaendlvglrkdldEATLARVDLEAKIESLKEELAFLKKN--HEEEVRELQAQVSDTQ-VNVEMDAARKLD 167

                         170
                  ....*....|....*
gi 564324996  525 LSRARAQHRAEVEQM 539
Cdd:pfam00038 168 LTSALAEIRAQYEEI 182
LRRcap smart00446
occurring C-terminal to leucine-rich repeats; A motif occurring C-terminal to leucine-rich ...
 117-134 1.11e-03

occurring C-terminal to leucine-rich repeats; A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.


Pssm-ID: 197729  Cd Length: 19  Bit Score: 36.52  E-value: 1.11e-03
                           10
                   ....*....|....*...
gi 564324996   117 SDYRLFVVHMLPKLRQLD 134
Cdd:smart00446   2 AHYREKVIELLPQLRKLD 19
LRR_8 pfam13855
Leucine rich repeat;
55-90 1.37e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 37.12  E-value: 1.37e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 564324996   55 LKSLDLSRNSLVSLEG--IQYLVSLESLNLYYNCISSL 90
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTL 40
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 53-85 1.58e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 36.45  E-value: 1.58e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 564324996   53 TALKSLDLSRNSLVSLEGIQYLVSLESLNLYYN 85
Cdd:pfam12799   1 PNLEVLDLSNNQITDIPPLAKLPNLETLDLSGN 33
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 40-103 2.12e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 39.77  E-value: 2.12e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564324996  40 EKITHLGNslmhLTALKSLDLSRNSLVSLEGIQYLVSLESLNLYYNCISSLAEVFRLHTLMELQ 103
Cdd:cd21340   37 TKIENLEF----LTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISVVEGLENLTNLEELH 96
46 PHA02562
endonuclease subunit; Provisional
 399-551 7.61e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 39.23  E-value: 7.61e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564324996 399 ENKALQSRLTEQ-------HQQYAAAVTKVTTELNNTKRELDTLrQHLDNSLEENDNLKSLLYNVKQEVkhaDTSGALSL 471
Cdd:PHA02562 231 TIKAEIEELTDEllnlvmdIEDPSAALNKLNTAAAKIKSKIEQF-QKVIKMYEKGGVCPTCTQQISEGP---DRITKIKD 306

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564324996 472 QITGLQTSMKQLSGEVMELKQHVAHYD----KIQELTQMLQESHSSLVSTN------EHLLQELSRARAQHRAEVEQMHW 541
Cdd:PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNeqskKLLELKNKISTNKQSLITLVdkakkvKAAIEELQAEFVDNAEELAKLQD 386

                        170
                 ....*....|
gi 564324996 542 SFQELKKTTA 551
Cdd:PHA02562 387 ELDKIVKTKS 396
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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