N terminus of Notch ligand C2-like domain; This entry represents a region of conserved sequence at the N terminus of several Notch ligand proteins. The entry has been extended to correspond to the C2-like domain defined by the protein structure.

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530383602   22 SGVFELKLQEFVNKKGLLGNRNCCRGGAGP--PPCA--CRTFFRVCLKHYQASVSPEPPCTYGSAVTPVLGVDSFSLPdg 97
Cdd:pfam07657   1 SGYFELQLLSFENPNGRLANGNCCDGGRSSsdGQCRdeCDTYFRVCLKEYQANVSPDGPCTFGSGSTPVLGGNSFTLP-- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530383602   98 GGADSAFSNPIRFPFGFTWPGTFSLIIEALHTDSPDDLATENPeRLISRLATQRHLTVGEEWSQDLHSSGRTDLKYSYRF 177
Cdd:pfam07657  79 GLLKGSFRGPIVIPFQFAWPGSFTLIVEAWDEDNSTDSGSDNP-RLIERAIHQGMLNPGDEWQTLRHNGGVAELEYSYRV 157

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 530383602 329 IDECD-PSPCKNGGSCTDLENSYSCTCPPGFYGKICE 364
Cdd:cd00054    2 IDECAsGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 530383602 288 DLNYCTHHKPCKNGATCTNTgQGSYTCSCRPGYTGATCE 326
Cdd:cd00054    1 DIDECASGNPCQNGGTCVNT-VGSYRCSCPPGYTGRNCE 38

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

                         10        20        30
                 ....*....|....*....|....*....|.
gi 530383602 373 GPCFNGGRCSDSPdGGYSCRCPVGYSGFNCE 403
Cdd:cd00054    9 NPCQNGGTCVNTV-GSYRCSCPPGYTGRNCE 38

N terminus of Notch ligand C2-like domain; This entry represents a region of conserved sequence at the N terminus of several Notch ligand proteins. The entry has been extended to correspond to the C2-like domain defined by the protein structure.

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530383602   22 SGVFELKLQEFVNKKGLLGNRNCCRGGAGP--PPCA--CRTFFRVCLKHYQASVSPEPPCTYGSAVTPVLGVDSFSLPdg 97
Cdd:pfam07657   1 SGYFELQLLSFENPNGRLANGNCCDGGRSSsdGQCRdeCDTYFRVCLKEYQANVSPDGPCTFGSGSTPVLGGNSFTLP-- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530383602   98 GGADSAFSNPIRFPFGFTWPGTFSLIIEALHTDSPDDLATENPeRLISRLATQRHLTVGEEWSQDLHSSGRTDLKYSYRF 177
Cdd:pfam07657  79 GLLKGSFRGPIVIPFQFAWPGSFTLIVEAWDEDNSTDSGSDNP-RLIERAIHQGMLNPGDEWQTLRHNGGVAELEYSYRV 157

Delta serrate ligand; This family has been redefined to correspond to the EGF-like domain defined by structure.

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 530383602  179 CDEHYYGEGCSVFCRPRDDAFGHFTCGERGEKVCNPGWKGPYCTEP 224
Cdd:pfam01414   1 CDENYYGSTCSKFCRPRDDKFGHYTCDANGNKVCLPGWTGPYCDKP 46

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 530383602 443 NVDDCAS-SPCANGGTCRDGVNDFSCTCPPGYTGRNC 478
Cdd:cd00054    1 DIDECASgNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37

Calcium-binding EGF-like domain;

                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 530383602   329 IDEC-DPSPCKNGGSCTDLENSYSCTCPPGFY-GKICE 364
Cdd:smart00179   2 IDECaSGNPCQNGGTCVNTVGSYRCECPPGYTdGRNCE 39

Calcium-binding EGF-like domain;

                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 530383602   288 DLNYCTHHKPCKNGATCTNTgQGSYTCSCRPGYT-GATCE 326
Cdd:smart00179   1 DIDECASGNPCQNGGTCVNT-VGSYRCECPPGYTdGRNCE 39

EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.

                          10        20        30
                  ....*....|....*....|....*....|.
gi 530383602  447 CASSPCANGGTCRDGVNDFSCTCPPGYTGRN 477
Cdd:pfam00008   1 CAPNPCSNGGTCVDTPGGYTCICPEGYTGKR 31

EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.

                          10        20        30
                  ....*....|....*....|....*....|.
gi 530383602  409 CSSSPCSNGAKCVDLGDAYLCRCQAGFSGRH 439
Cdd:pfam00008   1 CAPNPCSNGGTCVDTPGGYTCICPEGYTGKR 31

Calcium-binding EGF-like domain;

                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 530383602   406 IDYCSS-SPCSNGAKCVDLGDAYLCRCQAGFS-GRHCD 441
Cdd:smart00179   2 IDECASgNPCQNGGTCVNTVGSYRCECPPGYTdGRNCE 39

N terminus of Notch ligand C2-like domain; This entry represents a region of conserved sequence at the N terminus of several Notch ligand proteins. The entry has been extended to correspond to the C2-like domain defined by the protein structure.

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530383602   22 SGVFELKLQEFVNKKGLLGNRNCCRGGAGP--PPCA--CRTFFRVCLKHYQASVSPEPPCTYGSAVTPVLGVDSFSLPdg 97
Cdd:pfam07657   1 SGYFELQLLSFENPNGRLANGNCCDGGRSSsdGQCRdeCDTYFRVCLKEYQANVSPDGPCTFGSGSTPVLGGNSFTLP-- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530383602   98 GGADSAFSNPIRFPFGFTWPGTFSLIIEALHTDSPDDLATENPeRLISRLATQRHLTVGEEWSQDLHSSGRTDLKYSYRF 177
Cdd:pfam07657  79 GLLKGSFRGPIVIPFQFAWPGSFTLIVEAWDEDNSTDSGSDNP-RLIERAIHQGMLNPGDEWQTLRHNGGVAELEYSYRV 157

Delta serrate ligand; This family has been redefined to correspond to the EGF-like domain defined by structure.

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 530383602  179 CDEHYYGEGCSVFCRPRDDAFGHFTCGERGEKVCNPGWKGPYCTEP 224
Cdd:pfam01414   1 CDENYYGSTCSKFCRPRDDKFGHYTCDANGNKVCLPGWTGPYCDKP 46

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 530383602 443 NVDDCAS-SPCANGGTCRDGVNDFSCTCPPGYTGRNC 478
Cdd:cd00054    1 DIDECASgNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37

Calcium-binding EGF-like domain;

                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 530383602   329 IDEC-DPSPCKNGGSCTDLENSYSCTCPPGFY-GKICE 364
Cdd:smart00179   2 IDECaSGNPCQNGGTCVNTVGSYRCECPPGYTdGRNCE 39

Calcium-binding EGF-like domain;

                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 530383602   288 DLNYCTHHKPCKNGATCTNTgQGSYTCSCRPGYT-GATCE 326
Cdd:smart00179   1 DIDECASGNPCQNGGTCVNT-VGSYRCECPPGYTdGRNCE 39

EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.

                          10        20        30
                  ....*....|....*....|....*....|.
gi 530383602  447 CASSPCANGGTCRDGVNDFSCTCPPGYTGRN 477
Cdd:pfam00008   1 CAPNPCSNGGTCVDTPGGYTCICPEGYTGKR 31

EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.

                          10        20        30
                  ....*....|....*....|....*....|.
gi 530383602  409 CSSSPCSNGAKCVDLGDAYLCRCQAGFSGRH 439
Cdd:pfam00008   1 CAPNPCSNGGTCVDTPGGYTCICPEGYTGKR 31

Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.

                         10        20        30
                 ....*....|....*....|....*....|
gi 530383602 448 ASSPCANGGTCRDGVNDFSCTCPPGYTGRN 477
Cdd:cd00053    4 ASNPCSNGGTCVNTPGSYRCVCPPGYTGDR 33

EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.

                          10        20        30
                  ....*....|....*....|....*....|
gi 530383602  370 CADGPCFNGGRCSDSPdGGYSCRCPVGYSG 399
Cdd:pfam00008   1 CAPNPCSNGGTCVDTP-GGYTCICPEGYTG 29

Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.

                         10        20
                 ....*....|....*....|....*....
gi 530383602 333 DPSPCKNGGSCTDLENSYSCTCPPGFYGK 361
Cdd:cd00053    4 ASNPCSNGGTCVNTPGSYRCVCPPGYTGD 32

Human growth factor-like EGF; hEGF, or human growth factor-like EGF, domains have six conserved residues disulfide-bonded into the characteriztic 'ababcc' pattern. They are involved in growth and proliferation of cells, in proteins of the Notch/Delta pathway, neurogulin and selectins. hEGFs are also found in mosaic proteins with four-disulfide laminin EGFs such as aggrecan and perlecan. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal Cys residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In hEGFs the C-terminal thiol resides in the beta-turn, resulting in shorter loop-lengths between the Cys residues of disulfide 'c', typically C[8-9]XC. These shorter loop-lengths are also typical of the four-disulfide EGF domains, laminin ad integrin. Tandem hEGF domains have six linking residues between terminal cysteines of adjacent domains. hEGF domains may or may not bind calcium in the linker region. hEGF domains with the consensus motif CXD4X[F,Y]XCXC are hydroxylated exclusively in the Asp residue.

                          10        20
                  ....*....|....*....|..
gi 530383602  337 CKNGGSCTDLENSYSCTCPPGF 358
Cdd:pfam12661   1 CQNGGTCVDGVNGYKCQCPPGY 22