|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
725-981 |
4.65e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 91.71 E-value: 4.65e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 725 LLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQDF-LCCDLGKLLLKLKK 803
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAeALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 804 VNKAEKVLKQALEHDIvqdipsmmNDVKCLLLLAKVYKSHKK-EAVIETLNKALDLQSRilkrvpleqpemipsqkqlAA 882
Cdd:COG2956 92 LDRAEELLEKLLELDP--------DDAEALRLLAEIYEQEGDwEKAIEVLERLLKLGPE-------------------NA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 883 SICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFR 962
Cdd:COG2956 145 HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK 224
|
250
....*....|....*....
gi 530372003 963 KQKHEAAINLYHQVLEKAP 981
Cdd:COG2956 225 LGDPEEALELLRKALELDP 243
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
314-1056 |
1.08e-19 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 95.54 E-value: 1.08e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 314 FIERTFMATPSYVHVATELGYLFILKNQVKEALLWYSEAMKLDKDGMAGLTGIILCHILEGHLEEAEYRLEFLkeVQKSL 393
Cdd:TIGR02917 181 LIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADAL--LKKAP 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 394 GKSEVLiFLQALLMSRKHKGEEETTALlKEAVELHFSSMQGIPLG--SEY----FEKLDPYFlvciaKEYLLFCPKQP-- 465
Cdd:TIGR02917 259 NSPLAH-YLKALVDFQKKNYEDARETL-QDALKSAPEYLPALLLAgaSEYqlgnLEQAYQYL-----NQILKYAPNSHqa 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 466 -RLPG--QIVSPLLKQVAVILNPVVKAAPalIDPLYL-MAQVRYY-SGELENAQSILQRCLELDPASVDAHLLMCQIYLA 540
Cdd:TIGR02917 332 rRLLAsiQLRLGRVDEAIATLSPALGLDP--DDPAALsLLGEAYLaLGDFEKAAEYLAKATELDPENAAARTQLGISKLS 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 541 QGNFGMCFHCLELGVSHNFQVRDhplYHLIKARALNKAGDYPEAIKTLKmviklpALKKEEGRKflrPSVQpSQRASILL 620
Cdd:TIGR02917 410 QGDPSEAIADLETAAQLDPELGR---ADLLLILSYLRSGQFDKALAAAK------KLEKKQPDN---ASLH-NLLGAIYL 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 621 ELVEALRLNGELHEATKVMQDTINEfggtpeenRITIANVDLvlSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQT 700
Cdd:TIGR02917 477 GKGDLAKAREAFEKALSIEPDFFPA--------AANLARIDI--QEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRT 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 701 LRDRRlYIRCYRELCEHLPGPHT-SLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYE 779
Cdd:TIGR02917 547 GNEEE-AVAWLEKAAELNPQEIEpALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 780 AAQKINGQDFLC-CDLGKLLLKLKKVNKAEKVLKQALEHDivqdipsmMNDVKCLLLLAKvykshkkeavIETLNKALDL 858
Cdd:TIGR02917 626 KLLALQPDSALAlLLLADAYAVMKNYAKAITSLKRALELK--------PDNTEAQIGLAQ----------LLLAAKRTES 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 859 QSRILKRvpleqpemIPSQKQLAASICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLeLAQLYLLQGHLDLCEQH 938
Cdd:TIGR02917 688 AKKIAKS--------LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEAVKT 758
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 939 CAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPawrflslilDNFLVLHKLIDLLRRSgkleDIPAFFEL 1018
Cdd:TIGR02917 759 LEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAP---------DNAVVLNNLAWLYLEL----KDPRALEY 825
|
730 740 750
....*....|....*....|....*....|....*...
gi 530372003 1019 AKKVSSRVPLEPGFNYCRGIYCWHIGQPNEALKFLNKA 1056
Cdd:TIGR02917 826 AERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
664-979 |
1.23e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 84.78 E-value: 1.23e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 664 LSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLP-GPHTSLLLGDALMSILEPEKALE 742
Cdd:COG2956 19 LLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRR-RGEYDRAIRIHQKLLERDPdRAEALLELAQDYLKAGLLDRAEE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 743 VYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD-FLCCDLGKLLLKLKKVNKAEKVLKQALEHDivq 821
Cdd:COG2956 98 LLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENaHAYCELAELYLEQGDYDEAIEALEKALKLD--- 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 822 dipsmmndvkcllllakvykshkkeavietlnkaldlqsrilkrvpleqPEMIPSQKQLAasiciqfaEHYLAEKEYDKA 901
Cdd:COG2956 175 -------------------------------------------------PDCARALLLLA--------ELYLEQGDYEEA 197
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530372003 902 VQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLmADLMFRKQKHEAAINLYHQVLEK 979
Cdd:COG2956 198 IAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQLRR 274
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
498-818 |
3.01e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 83.63 E-value: 3.01e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 498 YLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYHLIKARALNK 577
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERD---PDRAEALLELAQDYLK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 578 AGDYPEAIKTLKMVIKLPAlkkeegrkflrpsvqpsqrasillELVEALRLNGELHEATKvmqdtinefggtpeenriti 657
Cdd:COG2956 89 AGLLDRAEELLEKLLELDP------------------------DDAEALRLLAEIYEQEG-------------------- 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 658 anvdlvlskgNVDVALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILE 736
Cdd:COG2956 125 ----------DWEKAIEVLERLLKLGPENAHAYCELAELYLE-QGDYDEAIEALEKALKLDPDcARALLLLAELYLEQGD 193
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 737 PEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQDFLCCDLGKLLLKLKKVNKAEKVLKQALE 816
Cdd:COG2956 194 YEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLR 273
|
..
gi 530372003 817 HD 818
Cdd:COG2956 274 RH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
507-1309 |
7.01e-17 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 86.68 E-value: 7.01e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 507 SGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNFQVRDHplyHLIKARALNKAGDYPEAIK 586
Cdd:TIGR02917 138 LGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDA---LLLKGDLLLSLGNIELALA 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 587 TLKMVIKLpalkkeegrkflrpsvQPSQRASILLELVEALRLnGELHEATKVMQDTINEFGGTPEENRITiANVDLvlSK 666
Cdd:TIGR02917 215 AYRKAIAL----------------RPNNIAVLLALATILIEA-GEFEEAEKHADALLKKAPNSPLAHYLK-ALVDF--QK 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 667 GNVDVALNMLRNILPKQSCYMEARE--KMANIYLQTLRDRRLYIRCYrelCEHLPGPHTSLLLgdaLMSIL----EPEKA 740
Cdd:TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLlaGASEYQLGNLEQAYQYLNQI---LKYAPNSHQARRL---LASIQlrlgRVDEA 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 741 LEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGqdflccdlgklllklkkvNKAEKVLKQALEHdiv 820
Cdd:TIGR02917 349 IATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP------------------ENAAARTQLGISK--- 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 821 qdipSMMNDVkcllllakvykshkkEAVIETLNKALDLQsrilkrvpleqPEMIPSQKQLAasiciqfaEHYLAEKEYDK 900
Cdd:TIGR02917 408 ----LSQGDP---------------SEAIADLETAAQLD-----------PELGRADLLLI--------LSYLRSGQFDK 449
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 901 AVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKA 980
Cdd:TIGR02917 450 ALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID 529
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 981 PawrflslilDNFLVLHKLIDLLRRSGKledipaffelakkvssrvplepgfnycrgiycwhigqPNEALKFLNKARKds 1060
Cdd:TIGR02917 530 P---------KNLRAILALAGLYLRTGN-------------------------------------EEEAVAWLEKAAE-- 561
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1061 twgqsaiyhmvqicLNPDNEvvggeafenQGAES---NYMEKKELEQqgvstAEKLLREFyphSDSSQTQLRLLQGLCRL 1137
Cdd:TIGR02917 562 --------------LNPQEI---------EPALAlaqYYLGKGQLKK-----ALAILNEA---ADAAPDSPEAWLMLGRA 610
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1138 ATREKaNMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGS 1217
Cdd:TIGR02917 611 QLAAG-DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR------ALELKPDNTEAQIGLAQLLLAAK 683
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1218 KFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHANPAIgfKLAFNYLKDKKFVEAIEICND 1297
Cdd:TIGR02917 684 RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI--KLHRALLASGNTAEAVKTLEA 761
|
810
....*....|..
gi 530372003 1298 VLREHPDYPKIR 1309
Cdd:TIGR02917 762 WLKTHPNDAVLR 773
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
5-775 |
1.35e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 85.52 E-value: 1.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 5 DSSLMAGIIYYSQEKYfhhvQQAAAV---GLEKFSNDPVLKFFKAYGVLKEEHIQDAISDLESIR----HHPDVSLcsTM 77
Cdd:TIGR02917 194 DALLLKGDLLLSLGNI----ELALAAyrkAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLkkapNSPLAHY--LK 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 78 ALI-YAHKRCEiidrEAIQELEYSLKEIRKTVsgTALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLT 156
Cdd:TIGR02917 268 ALVdFQKKNYE----DARETLQDALKSAPEYL--PALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLR 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 157 SDKPHTAKKAIEYLEQGIQDTKDVLGLMGKAmyFMMQQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEM 236
Cdd:TIGR02917 342 LGRVDEAIATLSPALGLDPDDPAALSLLGEA--YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIAD 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 237 GHRILEKDESNIDACQILTVHELaREGNMttatNHVRNLIKALETREPENPSLHLKkiivvsrlcgshqvilglvcsfie 316
Cdd:TIGR02917 420 LETAAQLDPELGRADLLLILSYL-RSGQF----DKALAAAKKLEKKQPDNASLHNL------------------------ 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 317 rtfmatpsyvhvateLGYLFILKNQVKEALLWYSEAMKLDKDGMAGLTGIILCHILEGHLEEAEYRLEflKEVQKSLGKS 396
Cdd:TIGR02917 471 ---------------LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE--KVLTIDPKNL 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 397 EVLIFLQALLMSRKHkgEEETTALLKEAVELHFSSMQG-IPLGSEYFEKLDPYFLVCIAKEYLLFCPKQPRL-----PGQ 470
Cdd:TIGR02917 534 RAILALAGLYLRTGN--EEEAVAWLEKAAELNPQEIEPaLALAQYYLGKGQLKKALAILNEAADAAPDSPEAwlmlgRAQ 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 471 IVSPLLKQVAVILNPVVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHc 550
Cdd:TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK- 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 551 lelgVSHNFQVR--DHPLYHLIKARALNKAGDYPEAIKTLKMVIKLpalkkeegrkflrpsvQPSqrASILLELVEALRL 628
Cdd:TIGR02917 691 ----IAKSLQKQhpKAALGFELEGDLYLRQKDYPAAIQAYRKALKR----------------APS--SQNAIKLHRALLA 748
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 629 NGELHEATKVMQDTINEfggTPEENRITIANVDLVLSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQTLRDRRLYi 708
Cdd:TIGR02917 749 SGNTAEAVKTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRALE- 824
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530372003 709 rcYRELCEHL-PGPHTSL-LLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAI 775
Cdd:TIGR02917 825 --YAERALKLaPNIPAILdTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR 891
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
482-751 |
5.30e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 79.77 E-value: 5.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 482 ILNPVVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqv 561
Cdd:COG2956 30 LLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD--- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 562 RDHPLYHLIKARALNKAGDYPEAIKTLKMVIKLpalkkeegrkflrpsvqPSQRASILLELVEALRLNGELHEATKVMQD 641
Cdd:COG2956 107 PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL-----------------GPENAHAYCELAELYLEQGDYDEAIEALEK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 642 TINEfggTPEENRITIANVDLVLSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPGP 721
Cdd:COG2956 170 ALKL---DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK-LGDPEEALELLRKALELDPSD 245
|
250 260 270
....*....|....*....|....*....|
gi 530372003 722 HTSLLLGDALMSILEPEKALEVYDEAYRQN 751
Cdd:COG2956 246 DLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
114-428 |
4.03e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 74.38 E-value: 4.03e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 114 YYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLEQGIQDTKD-VLGLMGKAMYFMM 192
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEY---DRAIRIHQKLLERDPDrAEALLELAQDYLK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 193 QQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESNIDACqiltvHELAREgnmttatnhv 272
Cdd:COG2956 89 AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY-----CELAEL---------- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 273 rnlikALETREPENPSLHLKKIIvvsrlcgshqvilglvcsfiertfMATPSYVHVATELGYLFILKNQVKEALLWYSEA 352
Cdd:COG2956 154 -----YLEQGDYDEAIEALEKAL------------------------KLDPDCARALLLLAELYLEQGDYEEAIAALERA 204
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530372003 353 MKLDKDGMAGLTGIILCHILEGHLEEAeyrLEFLKEVQKSLGKSEVLIFLQALLMsrKHKGEEETTALLKEAVELH 428
Cdd:COG2956 205 LEQDPDYLPALPRLAELYEKLGDPEEA---LELLRKALELDPSDDLLLALADLLE--RKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1095-1322 |
1.34e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 69.76 E-value: 1.34e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1095 NYMEKKELEQqgvstAEKLLREFYPHsDSSQTQLRLLQGLCRlatREKANMEAALGSFIQIAQAEKDSVPALLALAQAYV 1174
Cdd:COG2956 17 NYLLNGQPDK-----AIDLLEEALEL-DPETVEAHLALGNLY---RRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1175 FLKQIPKARMQLKRLaktpwvLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYK 1254
Cdd:COG2956 88 KAGLLDRAEELLEKL------LELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYD 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530372003 1255 DAVTNYKLAWKYSHHANPAIgFKLAFNYLKDKKFVEAIEICNDVLREHPDYPKIREEILEKARRSLRP 1322
Cdd:COG2956 162 EAIEALEKALKLDPDCARAL-LLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDP 228
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1044-1321 |
1.21e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 66.68 E-value: 1.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1044 GQPNEALKFLNKARKdstwgqsaiyhmvqicLNPDNEvvggEAFENQGaeSNYMEKKELEQqGVSTAEKLLrefyphsDS 1123
Cdd:COG2956 22 GQPDKAIDLLEEALE----------------LDPETV----EAHLALG--NLYRRRGEYDR-AIRIHQKLL-------ER 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1124 SQTQLRLLQGLCRLATREKaNMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLAKtpwvlsEAEDLE 1203
Cdd:COG2956 72 DPDRAEALLELAQDYLKAG-LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLK------LGPENA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1204 KSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHANPAIgFKLAFNYL 1283
Cdd:COG2956 145 HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPAL-PRLAELYE 223
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 530372003 1284 KDKKFVEAIEICNDVLREHPDYPKI--------REEILEKARRSLR 1321
Cdd:COG2956 224 KLGDPEEALELLRKALELDPSDDLLlaladlleRKEGLEAALALLE 269
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
572-1306 |
3.39e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 68.19 E-value: 3.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 572 ARALNKAGDYPEAIKTLKMVIKLPALKKEegrkflrpsvqpsqrasILLELVEALRLNGELheatkvmQDTINEFGGTP- 650
Cdd:TIGR02917 63 GKIYLALGDYAAAEKELRKALSLGYPKNQ-----------------VLPLLARAYLLQGKF-------QQVLDELPGKTl 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 651 --EENRITIANV--DLVLSKGNVDVALNMLRNILPKQSCYMEAreKMANIYLQTLRDRrlyIRCYRELCEHL----PGPH 722
Cdd:TIGR02917 119 ldDEGAAELLALrgLAYLGLGQLELAQKSYEQALAIDPRSLYA--KLGLAQLALAENR---FDEARALIDEVltadPGNV 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 723 TSLLL-GDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQDFLccdlgkLLLKL 801
Cdd:TIGR02917 194 DALLLkGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPL------AHYLK 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 802 KKVNKAEKVLKQALEHdiVQDIPSMMNDVKCLLLLAKVYKSHKKEavietLNKALDLQSRILKRVPleqpEMIPSQKQLA 881
Cdd:TIGR02917 268 ALVDFQKKNYEDARET--LQDALKSAPEYLPALLLAGASEYQLGN-----LEQAYQYLNQILKYAP----NSHQARRLLA 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 882 ASiciqfaehYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDlceqHCAILLQ--TEQNHETASVLMADL 959
Cdd:TIGR02917 337 SI--------QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE----KAAEYLAkaTELDPENAAARTQLG 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 960 MFR--KQKHEAAInlyhQVLEKAPAWRFLSLILDNFLVLHKLidllrRSGKLEDIPAffeLAKKVSSRVPLEP-GFNYCR 1036
Cdd:TIGR02917 405 ISKlsQGDPSEAI----ADLETAAQLDPELGRADLLLILSYL-----RSGQFDKALA---AAKKLEKKQPDNAsLHNLLG 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1037 GIYCWHiGQPNEALKFLNKARKdstwgqsaiyhmvqicLNPDNEvvggEAFENQgaeSNYMEKKELEQQGVSTAEKLLRE 1116
Cdd:TIGR02917 473 AIYLGK-GDLAKAREAFEKALS----------------IEPDFF----PAAANL---ARIDIQEGNPDDAIQRFEKVLTI 528
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1117 fYPHSdssqtqLRLLQGLCRLATReKANMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLAKTpwvl 1196
Cdd:TIGR02917 529 -DPKN------LRAILALAGLYLR-TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA---- 596
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1197 seAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYK--LAWKySHHANPAI 1274
Cdd:TIGR02917 597 --APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKraLELK-PDNTEAQI 673
|
730 740 750
....*....|....*....|....*....|..
gi 530372003 1275 GfkLAFNYLKDKKFVEAIEICNDVLREHPDYP 1306
Cdd:TIGR02917 674 G--LAQLLLAAKRTESAKKIAKSLQKQHPKAA 703
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
664-1308 |
4.60e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 67.42 E-value: 4.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 664 LSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQtlrdrrlyircyrelcehlpgphtsllLGDALMSILEPEKALEv 743
Cdd:TIGR02917 33 LQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLA---------------------------LGDYAAAEKELRKALS- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 744 ydeayrQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQDF--LCCDLGKLLLKLKKVNKAEKVLKQALEHDiVQ 821
Cdd:TIGR02917 85 ------LGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAaeLLALRGLAYLGLGQLELAQKSYEQALAID-PR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 822 DIPSMMNdvkclllLAKVYKSHKKEAvietlnKALDLQSRILKrvplEQPEMIPSQkQLAASIciqfaehYLAEKEYDKA 901
Cdd:TIGR02917 158 SLYAKLG-------LAQLALAENRFD------EARALIDEVLT----ADPGNVDAL-LLKGDL-------LLSLGNIELA 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 902 VQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAP 981
Cdd:TIGR02917 213 LAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAP 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 982 AwrFLSLILDNFLVLHKLIDLLRRSGKLEDIPAFFE---LAKKVSSRVPLEpgfnycrgiycwhIGQPNEALKFLNKArk 1058
Cdd:TIGR02917 293 E--YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPnshQARRLLASIQLR-------------LGRVDEAIATLSPA-- 355
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1059 dstwgqsaiyhmvqICLNPDNEvvggEAFenQGAESNYMEKKELEQqgvstAEKLL---REFYPHSDSSQTQLrllqGLC 1135
Cdd:TIGR02917 356 --------------LGLDPDDP----AAL--SLLGEAYLALGDFEK-----AAEYLakaTELDPENAAARTQL----GIS 406
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1136 RLATREKanmEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRL-AKTPwvlseaeDLEKSWLLLADIYC 1214
Cdd:TIGR02917 407 KLSQGDP---SEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLeKKQP-------DNASLHNLLGAIYL 476
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1215 QGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKE-------QSYKDAVTNY--------KLAWKYSHHANP--AIGF- 1276
Cdd:TIGR02917 477 GKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEgnpddaiQRFEKVLTIDpknlrailALAGLYLRTGNEeeAVAWl 556
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 530372003 1277 ---------------KLAFNYLKDKKFVEAIEICNDVLREHPDYPKI 1308
Cdd:TIGR02917 557 ekaaelnpqeiepalALAQYYLGKGQLKKALAILNEAADAAPDSPEA 603
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
475-680 |
1.28e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 63.59 E-value: 1.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 475 LLKQVAVILNPVVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELG 554
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 555 VSHNfqvRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKLpalkkeegrkflrpsvQPsQRASILLELVEALRLNGELHE 634
Cdd:COG2956 171 LKLD---PDCARALLLLAELYLEQGDYEEAIAALERALEQ----------------DP-DYLPALPRLAELYEKLGDPEE 230
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 530372003 635 ATKVMQDTINEFGGTPEENRItianVDLVLSKGNVDVALNMLRNIL 680
Cdd:COG2956 231 ALELLRKALELDPSDDLLLAL----ADLLERKEGLEAALALLERQL 272
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
476-594 |
1.76e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.21 E-value: 1.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 476 LKQVAVILNPVVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGV 555
Cdd:COG4783 20 YDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKAL 99
|
90 100 110
....*....|....*....|....*....|....*....
gi 530372003 556 SHNfqvRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG4783 100 KLD---PEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1096-1302 |
2.24e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 62.82 E-value: 2.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1096 YMEKKELEQqgvstAEKLLREFyphSDSSQTQLRLLQGLCRLATREKaNMEAALGSFIQIAQAEKDSVPALLALAQAYVF 1175
Cdd:COG2956 86 YLKAGLLDR-----AEELLEKL---LELDPDDAEALRLLAEIYEQEG-DWEKAIEVLERLLKLGPENAHAYCELAELYLE 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1176 LKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKD 1255
Cdd:COG2956 157 QGDYDEAIEALEK------ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 530372003 1256 AVTNYKLAWKysHHANPAIGFKLAFNYLKDKKFVEAIEICNDVLREH 1302
Cdd:COG2956 231 ALELLRKALE--LDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
889-982 |
3.03e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 59.25 E-value: 3.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 889 AEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEA 968
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
|
90
....*....|....
gi 530372003 969 AINLYHQVLEKAPA 982
Cdd:COG4235 104 AIAAWQKLLALLPA 117
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
686-861 |
8.52e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 60.79 E-value: 8.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 686 YMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPGPHTSL-LLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHA 764
Cdd:COG0457 7 DAEAYNNLGLAYRR-LGRYEEAIEDYEKALELDPDDAEALyNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 765 YVKAHQYTEAIEYYEAAQKINGQDFLCCD-LGKLLLKLKKVNKAEKVLKQALEHDIvqdipsmmNDVKCLLLLAKVY-KS 842
Cdd:COG0457 86 LQALGRYEEALEDYDKALELDPDDAEALYnLGLALLELGRYDEAIEAYERALELDP--------DDADALYNLGIALeKL 157
|
170
....*....|....*....
gi 530372003 843 HKKEAVIETLNKALDLQSR 861
Cdd:COG0457 158 GRYEEALELLEKLEAAALA 176
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
487-594 |
1.17e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 62.70 E-value: 1.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 487 VKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPL 566
Cdd:COG3914 105 LALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD---PDNAE 181
|
90 100
....*....|....*....|....*...
gi 530372003 567 YHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG3914 182 ALNNLGNALQDLGRLEEAIAAYRRALEL 209
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
664-788 |
1.41e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.51 E-value: 1.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 664 LSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALE 742
Cdd:COG4783 15 LLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQ-LGDLDEAIVLLHEALELDPDePEARLNLGLALLKAGDYDEALA 93
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 530372003 743 VYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD 788
Cdd:COG4783 94 LLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
492-594 |
7.28e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.58 E-value: 7.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 492 ALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYHLIK 571
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD---PDEPEARLNL 78
|
90 100
....*....|....*....|...
gi 530372003 572 ARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG4783 79 GLALLKAGDYDEALALLEKALKL 101
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
689-818 |
7.50e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 60.01 E-value: 7.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 689 AREKMANIYLQTLRDRRLYIRCYRELCEHLPGPHTSLL-LGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVK 767
Cdd:COG3914 79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFnLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR 158
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 530372003 768 AHQYTEAIEYYEAAQKINGQDF-LCCDLGKLLLKLKKVNKAEKVLKQALEHD 818
Cdd:COG3914 159 LGRLEEAIAALRRALELDPDNAeALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
487-594 |
1.95e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 54.24 E-value: 1.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 487 VKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPL 566
Cdd:COG4235 10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD---PDNPE 86
|
90 100
....*....|....*....|....*...
gi 530372003 567 YHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG4235 87 ALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
614-789 |
4.07e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 57.70 E-value: 4.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 614 QRASILLELVEALRLNGELHEATKVMQDTINEFGGTPEENRITIANVDLVLSKGNVDVALNMLRNILPKQSCYMEAREKM 693
Cdd:COG3914 39 AALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 694 ANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYT 772
Cdd:COG3914 119 GNLLLA-LGRLEEALAALRRALALNPDfAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLE 197
|
170
....*....|....*..
gi 530372003 773 EAIEYYEAAQKINGQDF 789
Cdd:COG3914 198 EAIAAYRRALELDPDNA 214
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
881-1021 |
4.95e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 53.27 E-value: 4.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 881 AASICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLM 960
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530372003 961 FRKQKHEAAINLYHQVLEKAPawrflslilDNFLVLHKLIDLLRRSGKLEDIPAFFELAKK 1021
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDP---------EHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
688-818 |
8.66e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.50 E-value: 8.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 688 EAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYV 766
Cdd:COG4783 5 EALYALAQALLL-AGDYDEAEALLEKALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 530372003 767 KAHQYTEAIEYYEAAQKINGQD-FLCCDLGKLLLKLKKVNKAEKVLKQALEHD 818
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHpEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
915-1058 |
1.11e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.12 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 915 DNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPawrflslilDNFL 994
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDP---------DEPE 73
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 530372003 995 VLHKLIDLLRRSGKLEDIPAFFELAKKVSsrvPLEPGFNYCRGIYCWHIGQPNEALKFLNKARK 1058
Cdd:COG4783 74 ARLNLGLALLKAGDYDEALALLEKALKLD---PEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
739-858 |
1.87e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.16 E-value: 1.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 739 KALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD-FLCCDLGKLLLKLKKVNKAEKVLKQALEH 817
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNaDALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 530372003 818 DivqdiPsmmNDVKCLLLLAKVY-KSHKKEAVIETLNKALDL 858
Cdd:COG4235 81 D-----P---DNPEALYLLGLAAfQQGDYAEAIAAWQKLLAL 114
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1163-1305 |
2.02e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 51.35 E-value: 2.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1163 VPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEY 1242
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEK------ALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 530372003 1243 MGFIMEKEQSYKDAVTNYKLAWKYsHHANPAIGFKLAFNYLKDKKFVEAIEICNDVLREHPDY 1305
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKL-DPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1110-1309 |
2.42e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 55.38 E-value: 2.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1110 AEKLLREFYPHSDSSQTQLRLLQGLCRLATREKANMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRL 1189
Cdd:COG3914 25 ELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1190 aktpwvLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYsHH 1269
Cdd:COG3914 105 ------LALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALEL-DP 177
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 530372003 1270 ANPAIGFKLAFNYLKDKKFVEAIEICNDVLREHPDYPKIR 1309
Cdd:COG3914 178 DNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
112-250 |
2.94e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 53.09 E-value: 2.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 112 ALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLEQGIQ-DTKDVLGLMGKAMYF 190
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRY---EEALADYEQALElDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 191 MMQQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESNIDA 250
Cdd:COG0457 87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADA 146
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
725-788 |
5.63e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.00 E-value: 5.63e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 530372003 725 LLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD 788
Cdd:COG4235 21 LLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDN 84
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
751-1011 |
6.76e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 51.93 E-value: 6.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 751 NPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQDF-LCCDLGKLLLKLKKVNKAEKVLKQALEHDIvqdipsmmND 829
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAeALYNLGLAYLRLGRYEEALADYEQALELDP--------DD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 830 VKCLLLLAKVY-KSHKKEAVIETLNKALDLQSRIlkrvpleqpemipsqkqlaASICIQFAEHYLAEKEYDKAVQSYKDV 908
Cdd:COG0457 76 AEALNNLGLALqALGRYEEALEDYDKALELDPDD-------------------AEALYNLGLALLELGRYDEAIEAYERA 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 909 FSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPAWRFLSL 988
Cdd:COG0457 137 LELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
|
250 260
....*....|....*....|...
gi 530372003 989 ILDNFLVLHKLIDLLRRSGKLED 1011
Cdd:COG0457 217 AALAELLLLALALLLALRLAALA 239
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
488-635 |
7.85e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 53.46 E-value: 7.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 488 KAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLY 567
Cdd:COG3914 72 AALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN---PDFAEA 148
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530372003 568 HLIKARALNKAGDYPEAIKTLKMVIKLpalkkeegrkflrpsvQPsQRASILLELVEALRLNGELHEA 635
Cdd:COG3914 149 YLNLGEALRRLGRLEEAIAALRRALEL----------------DP-DNAEALNNLGNALQDLGRLEEA 199
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
672-788 |
1.93e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.46 E-value: 1.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 672 ALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALEVYDEAYRQ 750
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLR-LGRYDEALAAYEKALRLDPDnADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*...
gi 530372003 751 NPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD 788
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1140-1321 |
3.95e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 49.62 E-value: 3.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1140 REKANMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKF 1219
Cdd:COG0457 19 RRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQ------ALELDPDDAEALNNLGLALQALGRY 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1220 DLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHaNPAIGFKLAFNYLKDKKFVEAIEICNDVL 1299
Cdd:COG0457 93 EEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPD-DADALYNLGIALEKLGRYEEALELLEKLE 171
|
170 180
....*....|....*....|..
gi 530372003 1300 REHPDYPKIREEILEKARRSLR 1321
Cdd:COG0457 172 AAALAALLAAALGEAALALAAA 193
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
112-247 |
5.42e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.49 E-value: 5.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 112 ALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLEQGIQ-DTKDVLGLMGKAMYF 190
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDL---DEAIVLLHEALElDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 530372003 191 MMQQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESN 247
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1144-1263 |
5.63e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.49 E-value: 5.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1144 NMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLaktpwvLSEAEDLEKSWLLLADIYCQGSKFDLAL 1223
Cdd:COG4783 19 DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEA------LELDPDEPEARLNLGLALLKAGDYDEAL 92
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 530372003 1224 ELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLA 1263
Cdd:COG4783 93 ALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
616-791 |
6.23e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 50.76 E-value: 6.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 616 ASILLELVEALRLNGELHEATKVMQDTINEFGGTPEenriTIANVDLVLSK-GNVDVALNMLRNILPKQSCYMEAREKMA 694
Cdd:COG3914 78 AALLELAALLLQALGRYEEALALYRRALALNPDNAE----ALFNLGNLLLAlGRLEEALAALRRALALNPDFAEAYLNLG 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 695 NIyLQTLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTE 773
Cdd:COG3914 154 EA-LRRLGRLEEAIAALRRALELDPDnAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEV 232
|
170
....*....|....*...
gi 530372003 774 AIEYYEAAQKINGQDFLC 791
Cdd:COG3914 233 YDRFEELLAALARGPSEL 250
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
486-544 |
6.39e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.92 E-value: 6.39e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 530372003 486 VVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNF 544
Cdd:COG4235 43 ALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
43-250 |
1.00e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.96 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 43 FFKAYGVLKEEHIQDAISDLES-IRHHPD-VSLCSTMALIYAhKRCEIidREAIQELEYSLKeiRKTVSGTALYYAGLFL 120
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEaLELDPEtVEAHLALGNLYR-RRGEY--DRAIRIHQKLLE--RDPDRAEALLELAQDY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 121 WLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLEQGIQ-DTKDVLGLMGKAMYFMMQQNYSEA 199
Cdd:COG2956 87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDW---EKAIEVLERLLKlGPENAHAYCELAELYLEQGDYDEA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 530372003 200 LEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESNIDA 250
Cdd:COG2956 164 IEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPA 214
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
616-790 |
1.41e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 48.08 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 616 ASILLELVEALRLNGELHEATKVMQDTINEFGGTPEenriTIANVDLVLSK-GNVDVALNMLRNILPKQSCYMEAREKMA 694
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAE----ALYNLGLAYLRlGRYEEALADYEQALELDPDDAEALNNLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 695 NIYLQtLRDRRLYIRCYRELCEHLPGPHTSLL-LGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTE 773
Cdd:COG0457 84 LALQA-LGRYEEALEDYDKALELDPDDAEALYnLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
|
170
....*....|....*..
gi 530372003 774 AIEYYEAAQKINGQDFL 790
Cdd:COG0457 163 ALELLEKLEAAALAALL 179
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
486-594 |
1.71e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 47.69 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 486 VVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHP 565
Cdd:COG0457 34 ALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELD---PDDA 110
|
90 100
....*....|....*....|....*....
gi 530372003 566 LYHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG0457 111 EALYNLGLALLELGRYDEAIEAYERALEL 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1153-1303 |
1.87e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.11 E-value: 1.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1153 IQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLAKTPWVLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQY 1232
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530372003 1233 NKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYShHANPAIGFKLAFNYLKDKKFVEAIEICNDVLREHP 1303
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS-PDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1147-1263 |
2.56e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 2.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1147 AALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLALELL 1226
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEK------ALRLDPDNADALLDLAEALLAAGDTEEAEELL 74
|
90 100 110
....*....|....*....|....*....|....*..
gi 530372003 1227 RRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLA 1263
Cdd:COG4235 75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1144-1231 |
2.82e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.00 E-value: 2.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1144 NMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLAL 1223
Cdd:COG4235 32 RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLER------ALALDPDNPEALYLLGLAAFQQGDYAEAI 105
|
....*...
gi 530372003 1224 ELLRRCVQ 1231
Cdd:COG4235 106 AAWQKLLA 113
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
738-821 |
3.01e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.72 E-value: 3.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 738 EKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD-FLCCDLGKLLLKLKKVNKAEKVLKQALE 816
Cdd:COG5010 71 EESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNpNAYSNLAALLLSLGQDDEAKAALQRALG 150
|
....*
gi 530372003 817 HDIVQ 821
Cdd:COG5010 151 TSPLK 155
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
889-981 |
4.22e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.80 E-value: 4.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 889 AEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEA 968
Cdd:COG4783 45 GEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124
|
90
....*....|...
gi 530372003 969 AINLYHQVLEKAP 981
Cdd:COG4783 125 AIAALEKALELDP 137
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
489-598 |
4.28e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.34 E-value: 4.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 489 AAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYH 568
Cdd:COG5010 49 KLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS---PDNPNAY 125
|
90 100 110
....*....|....*....|....*....|
gi 530372003 569 LIKARALNKAGDYPEAIKTLKMVIKLPALK 598
Cdd:COG5010 126 SNLAALLLSLGQDDEAKAALQRALGTSPLK 155
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
486-589 |
4.66e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 47.68 E-value: 4.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 486 VVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGM---CF-HCLELgVSHNFQV 561
Cdd:COG3914 138 ALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEaiaAYrRALEL-DPDNADA 216
|
90 100
....*....|....*....|....*...
gi 530372003 562 RDHPLYHLIKARALNKAGDYPEAIKTLK 589
Cdd:COG3914 217 HSNLLFALRQACDWEVYDRFEELLAALA 244
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
517-594 |
4.83e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.23 E-value: 4.83e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530372003 517 LQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD---PDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
487-594 |
6.98e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 46.15 E-value: 6.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 487 VKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPL 566
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD---PDDAE 77
|
90 100
....*....|....*....|....*...
gi 530372003 567 YHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG0457 78 ALNNLGLALQALGRYEEALEDYDKALEL 105
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1206-1312 |
8.67e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.03 E-value: 8.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1206 WLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYsHHANPAIGFKLAFNYLKD 1285
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL-DPDEPEARLNLGLALLKA 85
|
90 100
....*....|....*....|....*..
gi 530372003 1286 KKFVEAIEICNDVLREHPDYPKIREEI 1312
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRL 112
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1201-1309 |
8.84e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 45.77 E-value: 8.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1201 DLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHaNPAIGFKLAF 1280
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD-DAEALNNLGL 84
|
90 100
....*....|....*....|....*....
gi 530372003 1281 NYLKDKKFVEAIEICNDVLREHPDYPKIR 1309
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEAL 113
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
508-594 |
1.51e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.08 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 508 GELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHcLELGVSHNfqvRDHPLYHLIKARALNKAGDYPEAIKT 587
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLD---PNNAEALLNLAELLLELGDYDEALAY 81
|
....*..
gi 530372003 588 LKMVIKL 594
Cdd:COG3063 82 LERALEL 88
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
900-990 |
1.61e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.07 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 900 KAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEK 979
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90
....*....|....*
gi 530372003 980 AP----AWRFLSLIL 990
Cdd:COG4235 81 DPdnpeALYLLGLAA 95
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
499-784 |
1.63e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 45.29 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 499 LMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELgvSHNFQVRDHPLYHLIKARALNKA 578
Cdd:COG3071 21 LEGLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQ--ALELAPEAELAVLLTRAELLLDQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 579 GDYPEAIKTLKmviklpALKKEEGRkflrpsvqpsqRASILLELVEALRLNGELHEATKVMQDTINEFGGTPEE--NRIT 656
Cdd:COG3071 99 GQAEQALATLE------ALRAGAPR-----------HPQVLRLLLQAYRQLGDWEELLELLPALRKHKALSAEEaqALER 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 657 IANVDLVLSKGNVDVALNMLRNILPKQSCYMEArekMANIYLQTLRDRRLYIRCYRELCEHLP-GPHTSL--LLGDALMS 733
Cdd:COG3071 162 RAYLGLLRQAARDAEALKALWKALPRAERRDPE---LAAAYARALIALGDHDEAERLLREALKrQWDPRLvrLYGRLQGG 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 530372003 734 ilEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKI 784
Cdd:COG3071 239 --DPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALAL 287
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
736-818 |
1.72e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 41.69 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 736 EPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEyYEAAQKINGQDFLC-CDLGKLLLKLKKVNKAEKVLKQA 814
Cdd:COG3063 7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEAlLNLAELLLELGDYDEALAYLERA 85
|
....
gi 530372003 815 LEHD 818
Cdd:COG3063 86 LELD 89
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
892-984 |
1.77e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 41.69 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 892 YLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQhCAILLQTEQNHETASVLMADLMFRKQKHEAAIN 971
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|....
gi 530372003 972 LYHQVLEKAP-AWR 984
Cdd:COG3063 81 YLERALELDPsALR 94
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
688-785 |
1.78e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.41 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 688 EAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYV 766
Cdd:COG5010 55 AIESPSDNLYNK-LGDFEESLALLEQALQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL 133
|
90
....*....|....*....
gi 530372003 767 KAHQYTEAIEYYEAAQKIN 785
Cdd:COG5010 134 SLGQDDEAKAALQRALGTS 152
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
500-635 |
2.05e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 45.19 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 500 MAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLElgvshnfqvrdhplyhlikaRALNKAG 579
Cdd:PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALE--------------------RVEEQDP 245
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 530372003 580 DY-PEAIKTLKMVIKlpALKKE-EGRKFLRPSVQPSQRASILLELVEALRLNGELHEA 635
Cdd:PRK11788 246 EYlSEVLPKLMECYQ--ALGDEaEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAA 301
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
852-981 |
2.23e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.03 E-value: 2.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 852 LNKALDLQSRILKRVPLEQPEMIPSQKQLAASICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGH 931
Cdd:COG5010 24 VEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGD 103
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 530372003 932 LDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAP 981
Cdd:COG5010 104 KDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
828-1021 |
2.41e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 44.23 E-value: 2.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 828 NDVKCLLLLAKVYKSHKK-EAVIETLNKALDLQsrilkrvpleqPEMIPSQKQLAASiciqfaehYLAEKEYDKAVQSYK 906
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRyEEAIEDYEKALELD-----------PDDAEALYNLGLA--------YLRLGRYEEALADYE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 907 DVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPawrfl 986
Cdd:COG0457 67 QALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP----- 141
|
170 180 190
....*....|....*....|....*....|....*
gi 530372003 987 slilDNFLVLHKLIDLLRRSGKLEDIPAFFELAKK 1021
Cdd:COG0457 142 ----DDADALYNLGIALEKLGRYEEALELLEKLEA 172
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1187-1316 |
2.81e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.30 E-value: 2.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1187 KRLAKTPwvlseaEDLEkSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKY 1266
Cdd:COG4235 8 QALAANP------NDAE-GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 530372003 1267 sHHANPAIGFKLAFNYLKDKKFVEAIEICNDVLREHPDYPKIR--EEILEKA 1316
Cdd:COG4235 81 -DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARllEASIAEA 131
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
486-589 |
3.37e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 43.84 E-value: 3.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 486 VVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHP 565
Cdd:COG0457 68 ALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELD---PDDA 144
|
90 100
....*....|....*....|....
gi 530372003 566 LYHLIKARALNKAGDYPEAIKTLK 589
Cdd:COG0457 145 DALYNLGIALEKLGRYEEALELLE 168
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1205-1314 |
5.80e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.18 E-value: 5.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1205 SWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHANPAIgFKLAFNYLK 1284
Cdd:COG2956 10 GWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEAL-LELAQDYLK 88
|
90 100 110
....*....|....*....|....*....|
gi 530372003 1285 DKKFVEAIEICNDVLREHPDYPKIREEILE 1314
Cdd:COG2956 89 AGLLDRAEELLEKLLELDPDDAEALRLLAE 118
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
892-991 |
9.09e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 43.26 E-value: 9.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 892 YLAEKEYDKAVQSYKDVFSYLPTDNKVML-----ELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKH 966
Cdd:PRK11788 151 YQQEKDWQKAIDVAERLEKLGGDSLRVEIahfycELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDY 230
|
90 100
....*....|....*....|....*
gi 530372003 967 EAAINLYHQVLEKAPAwrFLSLILD 991
Cdd:PRK11788 231 AAAIEALERVEEQDPE--YLSEVLP 253
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
521-822 |
1.31e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 41.92 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 521 LELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKLpalkke 600
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELD---PDDAEALYNLGLAYLRLGRYEEALADYEQALEL------ 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 601 egrkflrpsvQPsQRASILLELVEALRLNGELHEAtkvmqdtinefggtpeenritianvdlvlskgnvdvaLNMLRNIL 680
Cdd:COG0457 72 ----------DP-DDAEALNNLGLALQALGRYEEA-------------------------------------LEDYDKAL 103
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 681 PKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPGPHTSLL-LGDALMSILEPEKALEVYDEAYRQNPHDASLAS 759
Cdd:COG0457 104 ELDPDDAEALYNLGLALLE-LGRYDEAIEAYERALELDPDDADALYnLGIALEKLGRYEEALELLEKLEAAALAALLAAA 182
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 530372003 760 RIGHAYVKAHQYTEAIEYYEAAQKINGQDFLCCDLGKLLLKLKKVNKAEKVLKQALEHDIVQD 822
Cdd:COG0457 183 LGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
895-959 |
1.67e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.95 E-value: 1.67e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530372003 895 EKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADL 959
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
892-981 |
2.04e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.20 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 892 YLAEKEYDKAVQSYKDVFSYLPTDN---KVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETAS---VLMADLMFRKQK 965
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPdalLKLGLSYLELGD 82
|
90
....*....|....*.
gi 530372003 966 HEAAINLYHQVLEKAP 981
Cdd:COG1729 83 YDKARATLEELIKKYP 98
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
1104-1236 |
2.35e-03 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 41.72 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1104 QQGVSTAEKLLRefyphSDSSQTQLRLLQGLCRLATREKA--NMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPK 1181
Cdd:PRK11788 158 QKAIDVAERLEK-----LGGDSLRVEIAHFYCELAQQALArgDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAA 232
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 530372003 1182 ARMQLKRLAKT-PWVLSEAEDlekswlLLADIYCQGSKFDLALELLRRCVQYNKSC 1236
Cdd:PRK11788 233 AIEALERVEEQdPEYLSEVLP------KLMECYQALGDEAEGLEFLRRALEEYPGA 282
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
92-201 |
2.63e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.22 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 92 EAIQELEYSLKEIRKtvSGTALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLE 171
Cdd:COG4235 1 EAIARLRQALAANPN--DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDT---EEAEELLE 75
|
90 100 110
....*....|....*....|....*....|.
gi 530372003 172 QGIQ-DTKDVLGLMGKAMYFMMQQNYSEALE 201
Cdd:COG4235 76 RALAlDPDNPEALYLLGLAAFQQGDYAEAIA 106
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
507-544 |
2.75e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.56 E-value: 2.75e-03
10 20 30
....*....|....*....|....*....|....*...
gi 530372003 507 SGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNF 544
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRL 38
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
91-244 |
3.08e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 41.25 E-value: 3.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 91 REAIQELEYSLKEirKTVSGTALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYL 170
Cdd:COG2956 127 EKAIEVLERLLKL--GPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDY---EEAIAAL 201
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530372003 171 EQGI-QDTKDVLGLMGKAMYFMMQQNYSEALEVVNQItVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKD 244
Cdd:COG2956 202 ERALeQDPDYLPALPRLAELYEKLGDPEEALELLRKA-LELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
1140-1315 |
5.48e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.22 E-value: 5.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1140 REKANMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLAKTPWVLSEAEDLEkswlllADIYCQGSKF 1219
Cdd:TIGR02917 204 LSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLK------ALVDFQKKNY 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372003 1220 DLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHANPAIGFkLAFNYLKDKKFVEAIEICNDVL 1299
Cdd:TIGR02917 278 EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRL-LASIQLRLGRVDEAIATLSPAL 356
|
170 180
....*....|....*....|
gi 530372003 1300 REHPDYPKIR----EEILEK 1315
Cdd:TIGR02917 357 GLDPDDPAALsllgEAYLAL 376
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
711-785 |
9.18e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 39.48 E-value: 9.18e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530372003 711 YRELCEHL---PGPHTSLLLGDALMSILEPEKALEVYDEAY-RQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKIN 785
Cdd:COG4700 76 LRELEKALefaDTVQNRVRLADALLELGRYDEAIELYEEALtGIFADDPHILLGLAQALFELGRYAEALETLEKLIAKN 154
|
|
| |
