|
Name |
Accession |
Description |
Interval |
E-value |
| DUF4485 |
pfam14846 |
Domain of unknown function (DUF4485); This family is found in eukaryotes, and is approximately ... |
13-98 |
3.13e-29 |
|
Domain of unknown function (DUF4485); This family is found in eukaryotes, and is approximately 90 amino acids in length.
Pssm-ID: 464345 Cd Length: 83 Bit Score: 111.60 E-value: 3.13e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 13 LDAEFDHFVVDMKPFVLKLPHRTERQRCALWIRKLCEPSGTgagIMGRKNRNLYAKLLLHMLKRGALEGPFTHRPEPGTL 92
Cdd:pfam14846 1 LDEEFLYFLLDIKPLLANLNDKEDKIRAAEWLKKLCEPTHN---LEEKKNRNDYLQLLLLMLQNGRLEGPFNKPPPPGPL 77
|
....*.
gi 530411712 93 KILPSY 98
Cdd:pfam14846 78 PPLPEF 83
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
302-934 |
1.78e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.52 E-value: 1.78e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 302 YRSKQHETEetiRKLEKkVQTLIRDCQVIRETKEDQIAELKKICEQSTESlnndweKKLHNAVAEMEQEKFDLQKQHTEN 381
Cdd:COG1196 170 YKERKEEAE---RKLEA-TEENLERLEDILGELERQLEPLERQAEKAERY------RELKEELKELEAELLLLKLRELEA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 382 IQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRN 461
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 462 TLHKEKDHLVNDYEQNmkllqtkyDADINLLKQEHALSASKASSMIEELEQnvcqLKQQLQESELQRKQQLRDQENKFQM 541
Cdd:COG1196 320 ELEEELAELEEELEEL--------EEELEELEEELEEAEEELEEAEAELAE----AEEALLEAEAELAEAEEELEELAEE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 542 EKSHLKHIYEKKAHDLQSE-LDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYA 620
Cdd:COG1196 388 LLEALRAAAELAAQLEELEeAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 621 EMKEQMEKVEADLTRSKSLREKQSKEflWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIEN-LE 699
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARL--LLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAaLA 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 700 KQLRAANMEHEN----QIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELG---LLREEEKQRATREHEIVVN 772
Cdd:COG1196 546 AALQNIVVEDDEvaaaAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLvasDLREADARYYVLGDTLLGR 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 773 KLKAESEKMKIELKKTHAAEtemtlekanskLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQ 852
Cdd:COG1196 626 TLVAARLEAALRRAVTLAGR-----------LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 853 KFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETKLKGLMPASlRQELEDTISSLK 932
Cdd:COG1196 695 LEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD-LEELERELERLE 773
|
..
gi 530411712 933 SQ 934
Cdd:COG1196 774 RE 775
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
559-877 |
4.83e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 4.83e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 559 SELDKGKEDTQKKihkfeeaLKEKEEQLTRVTEVQR-LQAQ------QADAAL-------EEFKRQVELNSEKvYAEMKE 624
Cdd:COG1196 168 SKYKERKEEAERK-------LEATEENLERLEDILGeLERQleplerQAEKAEryrelkeELKELEAELLLLK-LRELEA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 625 QMEKVEADLTRSKSLREKQSKEF-LWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLR 703
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELaELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 704 AANMEHENQIQEfKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKI 783
Cdd:COG1196 320 ELEEELAELEEE-LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 784 ELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIR 863
Cdd:COG1196 399 AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
|
330
....*....|....
gi 530411712 864 DNDQAIKVLQDELE 877
Cdd:COG1196 479 LAELLEELAEAAAR 492
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
254-938 |
2.28e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 2.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 254 REKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLY---RSKQHETEETIRKLEKKVQTL---IRDC 327
Cdd:TIGR02168 221 ELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLeelRLEVSELEEEIEELQKELYALaneISRL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 328 QVIRETKEDQIAELKKICEQSTESLNNDWEKKLHNA--VAEMEQEKFDLQKQHT------ENIQELLEDTNVRLNKMESE 399
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAeeLAELEEKLEELKEELEsleaelEELEAELEELESRLEELEEQ 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 400 YMAQTQ---STNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQI-----TCSELQEVKARRNTLHKEKDHLV 471
Cdd:TIGR02168 381 LETLRSkvaQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaelkeLQAELEELEEELEELQEELERLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 472 NDYEQNMKLLQTKYDADINLLKQEHALSASKAS--SMIEELEQNVCQLKQQLQESE-----LQRKQQLRDQENKFQMEKS 544
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQARLDSleRLQENLEGFSEGVKALLKNQSglsgiLGVLSELISVDEGYEAAIE 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 545 -----HLKHI------YEKKAHDLQSELDKGK------------------EDTQKKIHKFEEALKEKEEQ---------- 585
Cdd:TIGR02168 541 aalggRLQAVvvenlnAAKKAIAFLKQNELGRvtflpldsikgteiqgndREILKNIEGFLGVAKDLVKFdpklrkalsy 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 586 -LTRVTEVQRLQAQQADAALEEFK-RQVELNSEKVYA----------------EMKEQMEKVEADLTRSKSLREKQSKEf 647
Cdd:TIGR02168 621 lLGGVLVVDDLDNALELAKKLRPGyRIVTLDGDLVRPggvitggsaktnssilERRREIEELEEKIEELEEKIAELEKA- 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 648 LWQLEDIRQRYEQQIVELKLEHEQekthLLQQHNAEKDSLVRdHEREIENLEKQLRAANMEHENQIQEFKKRDAQvIADM 727
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEE----LSRQISALRKDLAR-LEAEVEQLEERIAQLSKELTELEAEIEELEER-LEEA 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 728 EAQVHKLREELINVNSQRKQQLVELGLLREE--EKQRATREHEIVVNKL--KAESEKMKIELKKTHAAETEMTLEKANSK 803
Cdd:TIGR02168 774 EEELAEAEAEIEELEAQIEQLKEELKALREAldELRAELTLLNEEAANLreRLESLERRIAATERRLEDLEEQIEELSED 853
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 804 LKQIEKEytqkLAKSSQIIAELQTTISSLKEENSQQQlAAERRLQDVRQKFEDEkkqlIRDNDQAIKVLQDELENRSNQV 883
Cdd:TIGR02168 854 IESLAAE----IEELEELIEELESELEALLNERASLE-EALALLRSELEELSEE----LRELESKRSELRRELEELREKL 924
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 884 RCAEKKLQHKELESQEQITYIRQEYETKLKGLMP-----ASLRQELEDTISSLKSQVNFL 938
Cdd:TIGR02168 925 AQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEAlenkiEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
248-936 |
4.35e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 63.84 E-value: 4.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 248 HFLSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKIL-ERKNNEIEELKTLYRSKQHETEETIRKLEKKvqtlird 326
Cdd:pfam02463 187 ELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLyLDYLKLNEERIDLLQELLRDEQEEIESSKQE------- 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 327 cQVIRETKEDQIAELKKICEQSTESLNNDWEKK-LHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQ 405
Cdd:pfam02463 260 -IEKEEEKLAQVLKENKEEEKEKKLQEEELKLLaKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 406 STNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKy 485
Cdd:pfam02463 339 ELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQL- 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 486 dADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGK 565
Cdd:pfam02463 418 -EDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 566 EDTQK-----KIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEM-KEQMEKVEADLTRSKSL 639
Cdd:pfam02463 497 ERSQKeskarSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADeVEERQKLVRALTELPLG 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 640 REKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQiqeFKKR 719
Cdd:pfam02463 577 ARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLR---KGVS 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 720 DAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEK 799
Cdd:pfam02463 654 LEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDK 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 800 ANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENR 879
Cdd:pfam02463 734 INEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEE 813
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 530411712 880 SNQVRCAEKKLQHKELESQEQITYIRQEYETKLKGLMPASLRQELEDTISSLKSQVN 936
Cdd:pfam02463 814 AELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQ 870
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
253-951 |
1.23e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 62.44 E-value: 1.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 253 IREKELDMKTKMMEAKFHEEKL----KLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQ 328
Cdd:pfam15921 108 LRQSVIDLQTKLQEMQMERDAMadirRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQ 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 329 VIRETKED-QIAELKKICEQstESLNNDWEKKLHNAVAEMEQE---KFDLQKQHTENIQELLEDTNVR-LNKMESEYMAQ 403
Cdd:pfam15921 188 EIRSILVDfEEASGKKIYEH--DSMSTMHFRSLGSAISKILREldtEISYLKGRIFPVEDQLEALKSEsQNKIELLLQQH 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 404 TQSTNHMIKELEARVQQLTGEAE------NSNLQRQKLIQEKAELERC-YQITCSELQEVKARRNTLHKEKDHLVNDYEQ 476
Cdd:pfam15921 266 QDRIEQLISEHEVEITGLTEKASsarsqaNSIQSQLEIIQEQARNQNSmYMRQLSDLESTVSQLRSELREAKRMYEDKIE 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 477 NMKLLQTKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLR--DQENKFQMEKSHLKHIYEKKA 554
Cdd:pfam15921 346 ELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwDRDTGNSITIDHLRRELDDRN 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 555 HDLQ---SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVqrlqAQQADAALEEFKRQVE-LNSEKVYAEmkeQMEKVE 630
Cdd:pfam15921 426 MEVQrleALLKAMKSECQGQMERQMAAIQGKNESLEKVSSL----TAQLESTKEMLRKVVEeLTAKKMTLE---SSERTV 498
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 631 ADLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELK--------LEHEQEKTHLLQQHNAEKDSLVRDHEREIENLekql 702
Cdd:pfam15921 499 SDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQhlknegdhLRNVQTECEALKLQMAEKDKVIEILRQQIENM---- 574
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 703 raanmeheNQIQEFKKRDAQVIADMEAQVhklrEELINvnsQRKQQLVELGLLREEeKQRATREHEIVVNKLKAESEKmk 782
Cdd:pfam15921 575 --------TQLVGQHGRTAGAMQVEKAQL----EKEIN---DRRLELQEFKILKDK-KDAKIRELEARVSDLELEKVK-- 636
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 783 ielkkthaaetemtLEKANSKLKQIEKEYTQKlakSSQIIAELQTTISSLKEENSQQQLAaERRLQDVRQKFEDEKKQLi 862
Cdd:pfam15921 637 --------------LVNAGSERLRAVKDIKQE---RDQLLNEVKTSRNELNSLSEDYEVL-KRNFRNKSEEMETTTNKL- 697
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 863 rdnDQAIKVLQDELENRSNQVRCAEKKLQHK---ELESQEQITYIRQEYETKlkglmpASLRQELEDTISSLKSQVNFLQ 939
Cdd:pfam15921 698 ---KMQLKSAQSELEQTRNTLKSMEGSDGHAmkvAMGMQKQITAKRGQIDAL------QSKIQFLEEAMTNANKEKHFLK 768
|
730
....*....|..
gi 530411712 940 KRASILQEELTT 951
Cdd:pfam15921 769 EEKNKLSQELST 780
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
416-955 |
4.02e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 4.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 416 ARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYeQNMKLLQTKYDADINLLKQE 495
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL-YALANEISRLEQQKQILRER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 496 HALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHlkhiyeKKAHDLQSELDKGKEDTQKKIHKF 575
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL------EELEAELEELESRLEELEEQLETL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 576 EEALKEKEEQLtrvtEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIR 655
Cdd:TIGR02168 385 RSKVAQLELQI----ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 656 QRYE--QQIVELKLEHEQEKTHLLQQHNAEKDSLVRDhEREIENLEKQLRAAnMEHENQIQEFKKRDAQVI---ADMEAQ 730
Cdd:TIGR02168 461 EALEelREELEEAEQALDAAERELAQLQARLDSLERL-QENLEGFSEGVKAL-LKNQSGLSGILGVLSELIsvdEGYEAA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 731 VHK-LREELINVNSQRKQQ-LVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEK--------- 799
Cdd:TIGR02168 539 IEAaLGGRLQAVVVENLNAaKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKfdpklrkal 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 800 ---------------ANSKLKQIEKEYT-----------------------QKLAKSSQIIAELQTTISSL--KEENSQQ 839
Cdd:TIGR02168 619 syllggvlvvddldnALELAKKLRPGYRivtldgdlvrpggvitggsaktnSSILERRREIEELEEKIEELeeKIAELEK 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 840 QLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYiRQEYETKLKGLMPA- 918
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE-IEELEERLEEAEEEl 777
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 530411712 919 ----SLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGR 955
Cdd:TIGR02168 778 aeaeAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
255-878 |
4.03e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.93 E-value: 4.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 255 EKELDMKTKMMEAKFHEEKLKLQQKhdadvqkilERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETK 334
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKDAEEAKKAEE---------ERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD 1293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 335 EDQIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEY-MAQTQSTNHMIKE 413
Cdd:PTZ00121 1294 EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAeAAEEKAEAAEKKK 1373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 414 LEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLhKEKDHLVNDYEQNMKLLQTKYDADINLLK 493
Cdd:PTZ00121 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA-KKKAEEKKKADEAKKKAEEAKKADEAKKK 1452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 494 QEHALSASKASSMIEElEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIH 573
Cdd:PTZ00121 1453 AEEAKKAEEAKKKAEE-AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE 1531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 574 KfeealKEKEEQLTRVTEVQRLqaqqadaalEEFKRQVELNSEKvyaEMKEQMEKVEADLTRSKSLREKqskeflwqlED 653
Cdd:PTZ00121 1532 E-----AKKADEAKKAEEKKKA---------DELKKAEELKKAE---EKKKAEEAKKAEEDKNMALRKA---------EE 1585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 654 IRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQlraaNMEHENQIQEFKKRDAQVIADMEAQVHK 733
Cdd:PTZ00121 1586 AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK----KVEQLKKKEAEEKKKAEELKKAEEENKI 1661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 734 LREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEK--EY 811
Cdd:PTZ00121 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKeaEE 1741
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530411712 812 TQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIR-DNDQAIKVLQDELEN 878
Cdd:PTZ00121 1742 DKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRmEVDKKIKDIFDNFAN 1809
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
273-825 |
8.82e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 8.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 273 KLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKIcEQSTESL 352
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL-ARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 353 NNDWEKKLHnavAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQR 432
Cdd:COG1196 305 ARLEERRRE---LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 433 QKLIQEKAELERcyqitcsELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQEHALSASKASSMIEELEQ 512
Cdd:COG1196 382 EELAEELLEALR-------AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 513 NVCQLKQQLQESELQRK--------QQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHK--FEEALKEK 582
Cdd:COG1196 455 EEEEEALLELLAELLEEaalleaalAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGavAVLIGVEA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 583 EEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQI 662
Cdd:COG1196 535 AYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAR 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 663 VELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLE--KQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELIN 740
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLegEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 741 VNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQ 820
Cdd:COG1196 695 LEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLER 774
|
....*
gi 530411712 821 IIAEL 825
Cdd:COG1196 775 EIEAL 779
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
380-935 |
1.22e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.92 E-value: 1.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 380 ENIQELLEDTNVRLNKMEsEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQitcsELQEVKAR 459
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLE-KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 460 RNTLHKEKDHLvndyEQNMKLLQTKydadinllKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRK-QQLRDQENK 538
Cdd:PRK03918 240 IEELEKELESL----EGSKRKLEEK--------IRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKlSEFYEEYLD 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 539 FQMEKSHLKHIYEKKAHDLQ-------------SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALE 605
Cdd:PRK03918 308 ELREIEKRLSRLEEEINGIEerikeleekeerlEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 606 EFKRQVElNSEKVYAEMKEQMEKVEADLTRSKSlREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEkthLLQQHNAEKD 685
Cdd:PRK03918 388 KLEKELE-ELEKAKEEIEEEISKITARIGELKK-EIKELKKAIEELKKAKGKCPVCGRELTEEHRKE---LLEEYTAELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 686 SlVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQviadmeaqvHKLREELINVNSqrkqqlvELGLLREEEKQRATR 765
Cdd:PRK03918 463 R-IEKELKEIEEKERKLRKELRELEKVLKKESELIKL---------KELAEQLKELEE-------KLKKYNLEELEKKAE 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 766 EHEIV---VNKLKAESEKMKIELKKTHA-----AETEMTLEKANSKLKQIEKEYTQKLAKSsqiIAELQTTISSLKE--E 835
Cdd:PRK03918 526 EYEKLkekLIKLKGEIKSLKKELEKLEElkkklAELEKKLDELEEELAELLKELEELGFES---VEELEERLKELEPfyN 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 836 NSQQQLAAERRLQDVRQKFEDEKKQL--IRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELEsqEQITYIRQEYETKLK 913
Cdd:PRK03918 603 EYLELKDAEKELEREEKELKKLEEELdkAFEELAETEKRLEELRKELEELEKKYSEEEYEELR--EEYLELSRELAGLRA 680
|
570 580
....*....|....*....|...
gi 530411712 914 GLMPA-SLRQELEDTISSLKSQV 935
Cdd:PRK03918 681 ELEELeKRREEIKKTLEKLKEEL 703
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
572-907 |
1.70e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 1.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 572 IHKFEEALKEKEEQLTRVTE-VQRLQAqqadaALEEFKRQV---ELNSEKV--YAEMKEQMEKVEADL--TRSKSLREKq 643
Cdd:TIGR02168 167 ISKYKERRKETERKLERTREnLDRLED-----ILNELERQLkslERQAEKAerYKELKAELRELELALlvLRLEELREE- 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 644 skeflwqlediRQRYEQQIVELKLEHEQEKTHLlqqhnAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEfkkrdaqv 723
Cdd:TIGR02168 241 -----------LEELQEELKEAEEELEELTAEL-----QELEEKLEELRLEVSELEEEIEELQKELYALANE-------- 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 724 IADMEAQVHKLREELINVNSQRKQQLVELGLL--REEEKQRATREHEIVVNKLKAESEKMKIELKkthaaETEMTLEKAN 801
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEELEAQLEELesKLDELAEELAELEEKLEELKEELESLEAELE-----ELEAELEELE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 802 SKLKQIEKEYTQKLAKSSQI---IAELQTTISSLKEENSQQQLAAERRLQ---DVRQKFEDEKKQLIRDNDQAIKVLQDE 875
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLelqIASLNNEIERLEARLERLEDRRERLQQeieELLKKLEEAELKELQAELEELEEELEE 451
|
330 340 350
....*....|....*....|....*....|..
gi 530411712 876 LENRSNQVRCAEKKLQHKELESQEQITYIRQE 907
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERE 483
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
250-810 |
1.91e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 1.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 250 LSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQV 329
Cdd:COG1196 231 LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 330 IRETkEDQIAELKKICEQSTESLNNDWEKK--LHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQST 407
Cdd:COG1196 311 RREL-EERLEELEEELAELEEELEELEEELeeLEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 408 NHM--IKELEARVQQLTGEAENSNLQRQKLIQEKAELERcyqitcsELQEVKARRNTLHKEkdhlvndyEQNMKLLQTKY 485
Cdd:COG1196 390 EALraAAELAAQLEELEEAEEALLERLERLEEELEELEE-------ALAELEEEEEEEEEA--------LEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 486 DADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGK 565
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 566 EDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSK 645
Cdd:COG1196 535 AYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAR 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 646 EFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDsLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIA 725
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE-GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 726 DMEAQVHKLREELiNVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKthAAETEMTLEKANSKLK 805
Cdd:COG1196 694 ELEEALLAEEEEE-RELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALE--ELPEPPDLEELERELE 770
|
....*
gi 530411712 806 QIEKE 810
Cdd:COG1196 771 RLERE 775
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
238-820 |
4.06e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.46 E-value: 4.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 238 LRKSSSFHDDHFLSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTL--YRSKQHETEETIRK 315
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeAKKKAEEAKKKADA 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 316 LEKKVQTLIRDCQVIRETKEDQIAELKKICEQS-TESLNNDWEKKLHNAVAEMEQEKF---DLQKQHTENIQELLEDTNV 391
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAeAAEKKKEEAKKKADAAKKKAEEKKkadEAKKKAEEDKKKADELKKA 1413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 392 RLNKMESEYMAQTQSTNHMIKELEARVQQ------LTGEAENS----NLQRQKLIQEKAELERCYQITCSELQEVKARRN 461
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEakkadeAKKKAEEAkkaeEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE 1493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 462 TLHKEKDHLVNDYEQNMKLLQTKYDADI----NLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRK--QQLRDQ 535
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAkkadEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKaeEAKKAE 1573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 536 ENKFQMEK--SHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEAlKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVEL 613
Cdd:PTZ00121 1574 EDKNMALRkaEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA-KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 614 NSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQ---IVELKLEHEQEKTHLLQQHNAEKDSLVRD 690
Cdd:PTZ00121 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEakkAEELKKKEAEEKKKAEELKKAEEENKIKA 1732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 691 HEREIENLEKQLRAANMEHEnqiQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIV 770
Cdd:PTZ00121 1733 EEAKKEAEEDKKKAEEAKKD---EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFAN 1809
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 530411712 771 VNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQ 820
Cdd:PTZ00121 1810 IIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNE 1859
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
506-951 |
1.13e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.89 E-value: 1.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 506 MIEELEQNVCQLKQQLQES-ELQRKQQ---------LRDQENKFQMEKSHLKHIYEKKAhdlQSELDKgKEDTQKKIHKF 575
Cdd:pfam15921 79 VLEEYSHQVKDLQRRLNESnELHEKQKfylrqsvidLQTKLQEMQMERDAMADIRRRES---QSQEDL-RNQLQNTVHEL 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 576 EEALKEKEEQL----TRVTEVQRLQAQQaDAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQL 651
Cdd:pfam15921 155 EAAKCLKEDMLedsnTQIEQLRKMMLSH-EGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEI 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 652 EDIRQR---YEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEhENQIQefkkrdaqviadme 728
Cdd:pfam15921 234 SYLKGRifpVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQ-ANSIQ-------------- 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 729 AQVHKLREELINVNSQRKQQLVELgllreeekqratrehEIVVNKLKAESEKMKiELKKTHAAETEMTLEKANSKLKQIE 808
Cdd:pfam15921 299 SQLEIIQEQARNQNSMYMRQLSDL---------------ESTVSQLRSELREAK-RMYEDKIEELEKQLVLANSELTEAR 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 809 KEYTQKLAKSSQIIAELQTTISSLKEEnsQQQLAAERrlqdvrqkfEDEKKQLIRDNDQAIKV--LQDELENRSNQVRCA 886
Cdd:pfam15921 363 TERDQFSQESGNLDDQLQKLLADLHKR--EKELSLEK---------EQNKRLWDRDTGNSITIdhLRRELDDRNMEVQRL 431
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530411712 887 EKKLQHKELESQEQITYIRQEYETKLKGLMP-ASLRQELEDTISSLKSQVNFLQKRASILQEELTT 951
Cdd:pfam15921 432 EALLKAMKSECQGQMERQMAAIQGKNESLEKvSSLTAQLESTKEMLRKVVEELTAKKMTLESSERT 497
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
293-863 |
1.39e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 55.61 E-value: 1.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 293 NEIEELKTLYRSKQH------ETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESLNNDWEKKLHNAVAE 366
Cdd:pfam12128 248 QEFNTLESAELRLSHlhfgykSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEAL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 367 MEQ----EKFDLQKQHTEniQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQ--------QLTGEAENSNLQRQK 434
Cdd:pfam12128 328 EDQhgafLDADIETAAAD--QEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSkikeqnnrDIAGIKDKLAKIREA 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 435 LIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQEhALSASKASSMIEELEQnv 514
Cdd:pfam12128 406 RDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQL-ENFDERIERAREEQEA-- 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 515 CQLKQQLQESELQRKQQLRDQEN-----------KFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHK--------- 574
Cdd:pfam12128 483 ANAEVERLQSELRQARKRRDQASealrqasrrleERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKvispellhr 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 575 ------FEEALKEKEEQLTRVT-EVQRLQAQQADAALEEFKRQVElNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEf 647
Cdd:pfam12128 563 tdldpeVWDGSVGGELNLYGVKlDLKRIDVPEWAASEEELRERLD-KAEEALQSAREKQAAAEEQLVQANGELEKASRE- 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 648 lwqLEDIRQRYEQ---QIVELKLEHEQEKTHLLQQHNAEKDSLvrdhEREIENLEKQLRAANMEHENQIQEFKKRDAQVI 724
Cdd:pfam12128 641 ---ETFARTALKNarlDLRRLFDEKQSEKDKKNKALAERKDSA----NERLNSLEAQLKQLDKKHQAWLEEQKEQKREAR 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 725 ADMEAQVHKLREELINvnsqrKQQLVELGLLREEEKQRAtreheivvnKLKAESEKMKIELKKTHAAETEMtlekanSKL 804
Cdd:pfam12128 714 TEKQAYWQVVEGALDA-----QLALLKAAIAARRSGAKA---------ELKALETWYKRDLASLGVDPDVI------AKL 773
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 530411712 805 KQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIR 863
Cdd:pfam12128 774 KREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLAR 832
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
525-911 |
1.68e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 1.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 525 ELQRKQQLRDQENKFQMEKSHLKHIYEKKAhdlqSELDKGKEDTQKKihkfEEALKEKEEQLTRVTEVQRLQAQQADAAL 604
Cdd:PTZ00121 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKA----DEAKKKAEEAKKK----ADAAKKKAEEAKKAAEAAKAEAEAAADEA 1359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 605 EEFKRQVELnsekvyAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEqqivELKLEHEQEKthllqqhNAEK 684
Cdd:PTZ00121 1360 EAAEEKAEA------AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD----ELKKAAAAKK-------KADE 1422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 685 DSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQlvELGLLREEEKQRAT 764
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD--EAKKKAEEAKKKAD 1500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 765 REHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAE 844
Cdd:PTZ00121 1501 EAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAL 1580
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530411712 845 RRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETK 911
Cdd:PTZ00121 1581 RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
635-901 |
1.75e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 55.13 E-value: 1.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 635 RSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLV-RDHEREIENLEKQLraanmehENQI 713
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIyAEQERMAMEREREL-------ERIR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 714 QEFKKRDAQVIADME--AQVHKLRE-ELINVNSQRKQQLVELGL-------LREEEKQRATREHEIVVNKLKAESEKMKI 783
Cdd:pfam17380 355 QEERKRELERIRQEEiaMEISRMRElERLQMERQQKNERVRQELeaarkvkILEEERQRKIQQQKVEMEQIRAEQEEARQ 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 784 ELKKTHAAETEMTLEkansKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIR 863
Cdd:pfam17380 435 REVRRLEEERAREME----RVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIE 510
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 530411712 864 DNDQAiKVLQDELENRSNQV-------RCAEKKLQHKELESQEQI 901
Cdd:pfam17380 511 EERKR-KLLEKEMEERQKAIyeeerrrEAEEERRKQQEMEERRRI 554
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
402-736 |
1.96e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 1.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 402 AQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLL 481
Cdd:TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 482 QTKYDADINLLKQEHALSA--SKASSMIEELEQNVCQLKQQLQESElQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQS 559
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEErlEEAEEELAEAEAEIEELEAQIEQLK-EELKALREALDELRAELTLLNEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 560 ELDKgKEDTQKKIHKFEEALKEKEEQLTRVT------EVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEA-- 631
Cdd:TIGR02168 829 LERR-IAATERRLEDLEEQIEELSEDIESLAaeieelEELIEELESELEALLNERASLEEALALLRSELEELSEELREle 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 632 ----DLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSL--VRDHEREIENLEKQLRAA 705
Cdd:TIGR02168 908 skrsELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEeeARRRLKRLENKIKELGPV 987
|
330 340 350
....*....|....*....|....*....|....*
gi 530411712 706 NMEHENQIQEFKKR----DAQvIADMEAQVHKLRE 736
Cdd:TIGR02168 988 NLAAIEEYEELKERydflTAQ-KEDLTEAKETLEE 1021
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
239-934 |
2.24e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 2.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 239 RKSSSFHDDHFLSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKtlyRSKQHETEETIRKLEK 318
Cdd:PTZ00121 1062 AKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKK---KAEDARKAEEARKAED 1138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 319 kvqtlIRDCQVIRETKEDQIAELKKICEQS---TESLNNDWEKKLHNAVAEMEQEKFDLQKQHTE--NIQELLEDTNVR- 392
Cdd:PTZ00121 1139 -----ARKAEEARKAEDAKRVEIARKAEDArkaEEARKAEDAKKAEAARKAEEVRKAEELRKAEDarKAEAARKAEEERk 1213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 393 ---LNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDH 469
Cdd:PTZ00121 1214 aeeARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD 1293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 470 LVNDYEQNMKLLQTKYdadinllKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKhi 549
Cdd:PTZ00121 1294 EAKKAEEKKKADEAKK-------KAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE-- 1364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 550 yEKKAHDLQSELDKGKEDTQKK----IHKFEEALKEKEEQLTRVTEVQRLQAQQADAalEEFKRQVElNSEKVYAEMKEQ 625
Cdd:PTZ00121 1365 -KAEAAEKKKEEAKKKADAAKKkaeeKKKADEAKKKAEEDKKKADELKKAAAAKKKA--DEAKKKAE-EKKKADEAKKKA 1440
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 626 MEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQivelKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAA 705
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK----KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK 1516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 706 NMEHENQIQEFKKRDAQVIAD--MEAQVHKLREELINVNSQRKQQLVElgllREEEKQR-------ATREHEIV--VNKL 774
Cdd:PTZ00121 1517 KAEEAKKADEAKKAEEAKKADeaKKAEEKKKADELKKAEELKKAEEKK----KAEEAKKaeedknmALRKAEEAkkAEEA 1592
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 775 KAESEKMKIELKKTHAAETEMTLEKANSKLKQIEK--EYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAE-------- 844
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKaeEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAeeakkaee 1672
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 845 --RRLQDVRQKFEDEKK---QLIRDNDQAIKVlqDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETKLKGLMPAS 919
Cdd:PTZ00121 1673 dkKKAEEAKKAEEDEKKaaeALKKEAEEAKKA--EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
|
730
....*....|....*
gi 530411712 920 LRQELEDTISSLKSQ 934
Cdd:PTZ00121 1751 KDEEEKKKIAHLKKE 1765
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
272-955 |
4.85e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 4.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 272 EKLKLQQKHDADVQKILERKNNEIEELKTlYRSKQHETEETIRKLEKKVQTLI----RDCQVIRETKEDQIAELKKICEQ 347
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRR-EREKAERYQALLKEKREYEGYELlkekEALERQKEAIERQLASLEEELEK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 348 STESLNnDWEKKLHNAVAEMEQEkfdlqkqhTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAEN 427
Cdd:TIGR02169 256 LTEEIS-ELEKRLEEIEQLLEEL--------NKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 428 SNLQRQKLIQEKAELERcyqitcsELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKyDADINLLKQEHALSASKASSMI 507
Cdd:TIGR02169 327 LEAEIDKLLAEIEELER-------EIEEERKRRDKLTEEYAELKEELEDLRAELEEV-DKEFAETRDELKDYREKLEKLK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 508 EELEQNVCQLKQqLQESELQRKQQLRDQENKfqmekshLKHIYEKKAhdlqsELDKGKEDTQKKIHKFEEALKEKEEQLT 587
Cdd:TIGR02169 399 REINELKRELDR-LQEELQRLSEELADLNAA-------IAGIEAKIN-----ELEEEKEDKALEIKKQEWKLEQLAADLS 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 588 RVtEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEF--LWQLEDIRQRYE------ 659
Cdd:TIGR02169 466 KY-EQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHgtVAQLGSVGERYAtaieva 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 660 -----QQIVELKLEHEQEKTHLLQQHNAEKDSL-----VRDHEREIENLEKQLR---AANM-EHENQIQE---FKKRDAQ 722
Cdd:TIGR02169 545 agnrlNNVVVEDDAVAKEAIELLKRRKAGRATFlplnkMRDERRDLSILSEDGVigfAVDLvEFDPKYEPafkYVFGDTL 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 723 VIADMEA---QVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELK---------KTHA 790
Cdd:TIGR02169 625 VVEDIEAarrLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSslqselrriENRL 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 791 AETEMTLEKANSKLKQIEKEYT---QKLAKSSQIIAELQTTISSLKEE---NSQQQLAAERRLQDVRQKFEDEKKQL--- 861
Cdd:TIGR02169 705 DELSQELSDASRKIGEIEKEIEqleQEEEKLKERLEELEEDLSSLEQEienVKSELKELEARIEELEEDLHKLEEALndl 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 862 -IRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEqITYIRQEYETKLKGLMpaSLRQELEDTISSLKSQVNFLQK 940
Cdd:TIGR02169 785 eARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNR-LTLEKEYLEKEIQELQ--EQRIDLKEQIKSIEKEIENLNG 861
|
730
....*....|....*
gi 530411712 941 RASILQEELTTYQGR 955
Cdd:TIGR02169 862 KKEELEEELEELEAA 876
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
555-917 |
5.01e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 53.59 E-value: 5.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 555 HDLQSELDKGKEDTQKKIHKFE-EALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVEL--NSEKVYAEMKEQMEKVEA 631
Cdd:pfam17380 276 HIVQHQKAVSERQQQEKFEKMEqERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIyaEQERMAMERERELERIRQ 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 632 DlTRSKSLREKQSKEFLWQLEDIRQryeqqIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHEN 711
Cdd:pfam17380 356 E-ERKRELERIRQEEIAMEISRMRE-----LERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 712 QiqEFKKRDAQVIADMEA-QVHKLREElinvNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHA 790
Cdd:pfam17380 430 E--EARQREVRRLEEERArEMERVRLE----EQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEE 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 791 AETEMTLEKANSKLKQIEKEYTQKlakssqIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLirdndqaik 870
Cdd:pfam17380 504 RKQAMIEEERKRKLLEKEMEERQK------AIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRL--------- 568
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 530411712 871 vlqDELENRSNQVR-CAEKKLQHKELESQEQITYIRQEYETKLKGLMP 917
Cdd:pfam17380 569 ---EAMEREREMMRqIVESEKARAEYEATTPITTIKPIYRPRISEYQP 613
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
270-637 |
7.36e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 7.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 270 HEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKL---EKKVQTLIRDCQVIRETKEDQIAELKKICE 346
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIsalRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 347 QSTEslNNDWEKKLHNAVAEMEQEKFDLQKQhTENIQELLEDTNVRLNKMESEYmaqtQSTNHMIKELEARVQQLTGEAE 426
Cdd:TIGR02168 762 EIEE--LEERLEEAEEELAEAEAEIEELEAQ-IEQLKEELKALREALDELRAEL----TLLNEEAANLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 427 NSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDY---EQNMKLLQTKYDadinllkqehalsasKA 503
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERaslEEALALLRSELE---------------EL 899
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 504 SSMIEELEQNVCQLKQQLQESElQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKE 583
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELR-EKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 530411712 584 EQLTRVTEVQRlqaqqadAALEEFKRQvelnsEKVYAEMKEQMEkveaDLTRSK 637
Cdd:TIGR02168 979 NKIKELGPVNL-------AAIEEYEEL-----KERYDFLTAQKE----DLTEAK 1016
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
620-952 |
1.31e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 1.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 620 AEMKEQMEKVEADLTRSKSLREKQSKEfLWQLEDIRQRYEQQIVELKLEHEQekthLLQQHNAEKdslvrdheREIENLE 699
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENR-LDELSQELSDASRKIGEIEKEIEQ----LEQEEEKLK--------ERLEELE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 700 KQLRAANMEHENQIQEFKKRDAqVIADMEAQVHKLREELinvnsqrkqqlvelgllreEEKQRATREHEIvvNKLKAESE 779
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEA-RIEELEEDLHKLEEAL-------------------NDLEARLSHSRI--PEIQAELS 801
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 780 KMKIELKKthaaetemtLEKANSKLKQIEKEYTQKLAKSSQIIAELQttisslkeensQQQLAAERRLQDVRQKFEDEKK 859
Cdd:TIGR02169 802 KLEEEVSR---------IEARLREIEQKLNRLTLEKEYLEKEIQELQ-----------EQRIDLKEQIKSIEKEIENLNG 861
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 860 QlirdndqaIKVLQDELENRSNQVRCAEKklQHKELESQeqityiRQEYETKLKGLMPAslRQELEDTISSLKSQVNFLQ 939
Cdd:TIGR02169 862 K--------KEELEEELEELEAALRDLES--RLGDLKKE------RDELEAQLRELERK--IEELEAQIEKKRKRLSELK 923
|
330
....*....|...
gi 530411712 940 KRASILQEELTTY 952
Cdd:TIGR02169 924 AKLEALEEELSEI 936
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
580-800 |
1.46e-06 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 52.14 E-value: 1.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 580 KEKEEQLTRVTEVQRLQAQQADAALEEFKRQVelnsEKVYAEMKEQMEKVEAdltRSKSLREKQskeflwqlediRQRYE 659
Cdd:PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEA----EKLKEELEEKKEKLQE---EEDKLLEEA-----------EKEAQ 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 660 QQIVELKLEHEQEKTHLLQQHNAEKDSLVrdhEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLRE--E 737
Cdd:PRK00409 577 QAIKEAKKEADEIIKELRQLQKGGYASVK---AHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQkgE 653
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530411712 738 LINVNSQRKQQL--------VELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKA 800
Cdd:PRK00409 654 VLSIPDDKEAIVqagimkmkVPLSDLEKIQKPKKKKKKKPKTVKPKPRTVSLELDLRGMRYEEALERLDKY 724
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
410-941 |
2.92e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 51.44 E-value: 2.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 410 MIKELEARVQQ---LTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKyd 486
Cdd:PRK01156 174 VIDMLRAEISNidyLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMK-- 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 487 adiNLLKQEHALSASKAsSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHiYEKKAHDLQSELDKGKE 566
Cdd:PRK01156 252 ---NRYESEIKTAESDL-SMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIEN-KKQILSNIDAEINKYHA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 567 DtqkkIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSekvYAEMKEQMEKVEADLTRSKSLREKQSKE 646
Cdd:PRK01156 327 I----IKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKS---IESLKKKIEEYSKNIERMSAFISEILKI 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 647 FLWQLEDIRQRYEQQIVELkleheQEKTHLLQQHNAEKDSLvRDHEREIENLEKQLRAANM-------EHENQIQEFKKR 719
Cdd:PRK01156 400 QEIDPDAIKKELNEINVKL-----QDISSKVSSLNQRIRAL-RENLDELSRNMEMLNGQSVcpvcgttLGEEKSNHIINH 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 720 DAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIvVNKLKAESEKMKI---ELKKTHAAETEMT 796
Cdd:PRK01156 474 YNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNK-IESARADLEDIKIkinELKDKHDKYEEIK 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 797 LEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQlirdNDQAIKVLQDEL 876
Cdd:PRK01156 553 NRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSY----IDKSIREIENEA 628
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530411712 877 ENRSNQVRCA-EKKLQHKELesQEQITYIRQEYeTKLKGLMPAslRQELEDTISSLKSQVNFLQKR 941
Cdd:PRK01156 629 NNLNNKYNEIqENKILIEKL--RGKIDNYKKQI-AEIDSIIPD--LKEITSRINDIEDNLKKSRKA 689
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
248-900 |
3.20e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.13 E-value: 3.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 248 HFLSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDC 327
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 328 QVIRETKEDQIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEKFD---LQKQHTENIQELLEDTNVRLNKMESEYMAQT 404
Cdd:pfam02463 314 EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEeleKLQEKLEQLEEELLAKKKLESERLSSAAKLK 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 405 QSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITcSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTK 484
Cdd:pfam02463 394 EEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEES-IELKQGKLTEEKEELEKQELKLLKDELELKKSED 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 485 YDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKG 564
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVE 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 565 KEDTQKKIHKFEEALKEKEEQL----TRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLR 640
Cdd:pfam02463 553 VSATADEVEERQKLVRALTELPlgarKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDT 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 641 EKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRD 720
Cdd:pfam02463 633 ELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEEL 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 721 AQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKA 800
Cdd:pfam02463 713 KKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK 792
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 801 NSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRS 880
Cdd:pfam02463 793 EEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQEL 872
|
650 660
....*....|....*....|
gi 530411712 881 NQVRCAEKKLQHKELESQEQ 900
Cdd:pfam02463 873 LLKEEELEEQKLKDELESKE 892
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
502-865 |
4.27e-06 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 50.60 E-value: 4.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 502 KASSMIEELEQNVCQLKQQLQESeLQRKQQLRDQENKFQMEKSHLKHIYEKkahdLQSELDKGKedtqkkiHKFEEALKE 581
Cdd:PRK04778 102 KAKHEINEIESLLDLIEEDIEQI-LEELQELLESEEKNREEVEQLKDLYRE----LRKSLLANR-------FSFGPALDE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 582 KEEQLtrvtevqrlqaqqaDAALEEFKRQVELNSE-------KVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDI 654
Cdd:PRK04778 170 LEKQL--------------ENLEEEFSQFVELTESgdyvearEILDQLEEELAALEQIMEEIPELLKELQTELPDQLQEL 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 655 RQRYEQQIVE-LKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAAN---------MEHE----NQIQEFKKRD 720
Cdd:PRK04778 236 KAGYRELVEEgYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQeridqlydiLEREvkarKYVEKNSDTL 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 721 AQVIADMEAQVHKLREELinvnsqrkQQLVELGLLREEEKQRAtREHEIVVNKLKAESEKMKIELKKTHAA--ETEMTLE 798
Cdd:PRK04778 316 PDFLEHAKEQNKELKEEI--------DRVKQSYTLNESELESV-RQLEKQLESLEKQYDEITERIAEQEIAysELQEELE 386
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530411712 799 KANSKLKQIEKEytqklakssqiIAELQTTISSLKEEnsqqQLAAERRLQDVRQKFEDEKKQLIRDN 865
Cdd:PRK04778 387 EILKQLEEIEKE-----------QEKLSEMLQGLRKD----ELEAREKLERYRNKLHEIKRYLEKSN 438
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
366-934 |
6.52e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.17 E-value: 6.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 366 EMEQEKFDLQKqhtenIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARvQQLTGEAENsnlQRQKLIQEKAELERC 445
Cdd:pfam01576 6 EMQAKEEELQK-----VKERQQKAESELKELEKKHQQLCEEKNALQEQLQAE-TELCAEAEE---MRARLAARKQELEEI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 446 YQITCSELQEVKARRNTLHKEKDHLvndyEQNMKLLQTKYDADiNLLKQEHALSASKASSMIEELEQNVCQLKQQLQESE 525
Cdd:pfam01576 77 LHELESRLEEEEERSQQLQNEKKKM----QQHIQDLEEQLDEE-EAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 526 LQRKQ----------QLRDQENKFQMeKSHLKHIYEKKAHDLQSEL---DKGKEDTQKKIHKFEEALKEKEEQLTRvtev 592
Cdd:pfam01576 152 KERKLleeriseftsNLAEEEEKAKS-LSKLKNKHEAMISDLEERLkkeEKGRQELEKAKRKLEGESTDLQEQIAE---- 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 593 qrLQAQQADAALEEFKRQVELNSEKVYAEmKEQMEKVEAdltrSKSLREKQS-----KEFLWQLEDIRQRYEQQIVELKL 667
Cdd:pfam01576 227 --LQAQIAELRAQLAKKEEELQAALARLE-EETAQKNNA----LKKIRELEAqiselQEDLESERAARNKAEKQRRDLGE 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 668 EHEQEKTHLL--QQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVN--- 742
Cdd:pfam01576 300 ELEALKTELEdtLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEkak 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 743 ----SQRKQQLVELGLL--REEEKQRATREHEIVVNKLKA---ESEKMKIEL-KKTHAAETEmtLEKANSKLKQIEKEYT 812
Cdd:pfam01576 380 qaleSENAELQAELRTLqqAKQDSEHKRKKLEGQLQELQArlsESERQRAELaEKLSKLQSE--LESVSSLLNEAEGKNI 457
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 813 QKLAKSSQIIAELQTTISSLKEENSQQ--------QLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVR 884
Cdd:pfam01576 458 KLSKDVSSLESQLQDTQELLQEETRQKlnlstrlrQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDA 537
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 530411712 885 CAEKKLQHKELESQEQITYIRQEYETKLKGL-----MPASLRQELEDTISSLKSQ 934
Cdd:pfam01576 538 GTLEALEEGKKRLQRELEALTQQLEEKAAAYdklekTKNRLQQELDDLLVDLDHQ 592
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
255-856 |
6.77e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.35 E-value: 6.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 255 EKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHET------EETIRKLEKKVQTLIRDCQ 328
Cdd:TIGR00618 276 EAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRaahvkqQSSIEEQRRLLQTLHSQEI 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 329 VIRETKEDQIAELKKICEQSTEslnndwekkLHNAVAEMEQEKFDLQK-QHTENIQELLEDTNVRLNKMESEYMAQTQST 407
Cdd:TIGR00618 356 HIRDAHEVATSIREISCQQHTL---------TQHIHTLQQQKTTLTQKlQSLCKELDILQREQATIDTRTSAFRDLQGQL 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 408 NHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTL--HKEKDHLVNDYEQNMKLLQTKY 485
Cdd:TIGR00618 427 AHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHlqETRKKAVVLARLLELQEEPCPL 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 486 DADINLLKQE--HALSASKASSMIEELEQNVCQLKQQLQE------SELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDL 557
Cdd:TIGR00618 507 CGSCIHPNPArqDIDNPGPLTRRMQRGEQTYAQLETSEEDvyhqltSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDI 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 558 QSeLDKGKEDTQKKIHKFEEALKEKEEQLTRvtEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSK 637
Cdd:TIGR00618 587 PN-LQNITVRLQDLTEKLSEAEDMLACEQHA--LLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREH 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 638 SLREKQSKEFLWQledIRQRYEQqivelKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFK 717
Cdd:TIGR00618 664 ALSIRVLPKELLA---SRQLALQ-----KMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLA 735
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 718 KRD---AQVIADMEAQVHKLREELINVNSQRKQQL-VELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAET 793
Cdd:TIGR00618 736 AREdalNQSLKELMHQARTVLKARTEAHFNNNEEVtAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSD 815
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 530411712 794 EMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLkEENSQQQLAAERRLQDVRQKFED 856
Cdd:TIGR00618 816 EDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKY-EECSKQLAQLTQEQAKIIQLSDK 877
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
598-835 |
7.31e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 7.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 598 QQADAALEEFKRqvelnsekvYAEMKEQMEKVEADLTRSKSLREKQSKefLWQLEDIRQRYEQQIVELKLEHEQEKTHLL 677
Cdd:COG4913 225 EAADALVEHFDD---------LERAHEALEDAREQIELLEPIRELAER--YAAARERLAELEYLRAALRLWFAQRRLELL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 678 QQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQ---QLVELGL 754
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARleaLLAALGL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 755 LREEEKQRATREHEivvnKLKAESEKMKIELKKTHAAETEM--TLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSL 832
Cdd:COG4913 374 PLPASAEEFAALRA----EAAALLEALEEELEALEEALAEAeaALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL 449
|
...
gi 530411712 833 KEE 835
Cdd:COG4913 450 AEA 452
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
557-775 |
8.26e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.63 E-value: 8.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 557 LQSELDKGKEDTQKKIHKFEEALKEKEEQLtrvtevqrlqaQQADAALEEFKRQ---VELNSE-----KVYAEMKEQMEK 628
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKEL-----------EEAEAALEEFRQKnglVDLSEEaklllQQLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 629 VEADLTRSKSLR---EKQSKEFLWQLEDIR-----QRYEQQIVELKLEHEQEKTHLLQQHNAekdslVRDHEREIENLEK 700
Cdd:COG3206 231 ARAELAEAEARLaalRAQLGSGPDALPELLqspviQQLRAQLAELEAELAELSARYTPNHPD-----VIALRAQIAALRA 305
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530411712 701 QLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRkQQLVELgllrEEEKQRATREHEIVVNKLK 775
Cdd:COG3206 306 QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELE-AELRRL----EREVEVARELYESLLQRLE 375
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
314-676 |
9.24e-06 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 49.90 E-value: 9.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 314 RKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESLNNDWEK--KLHNAVAEMEQEKFDLQKqhtENIQELLEDTNV 391
Cdd:PLN02939 48 KKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSsdDDHNRASMQRDEAIAAID---NEQQTNSKDGEQ 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 392 RLNKMESEYMAQTQSTNHMIKEL-EARVQQLtGEAEnsnlqrqKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHL 470
Cdd:PLN02939 125 LSDFQLEDLVGMIQNAEKNILLLnQARLQAL-EDLE-------KILTEKEALQGKINILEMRLSETDARIKLAAQEKIHV 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 471 VNDYEQNMKLLqtkydadiNLLKQEHALSASKASSMIEEL----EQNVcQLKQQLQESELQRKQQLRDQENKFQMEKSHl 546
Cdd:PLN02939 197 EILEEQLEKLR--------NELLIRGATEGLCVHSLSKELdvlkEENM-LLKDDIQFLKAELIEVAETEERVFKLEKER- 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 547 kHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALE---EFKRQVE-----LNSEKV 618
Cdd:PLN02939 267 -SLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDqnqDLRDKVDkleasLKEANV 345
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 530411712 619 YAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLedirQRYEQQIVEL-----KLEHEQEKTHL 676
Cdd:PLN02939 346 SKFSSYKVELLQQKLKLLEERLQASDHEIHSYI----QLYQESIKEFqdtlsKLKEESKKRSL 404
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
341-928 |
1.13e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.58 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 341 LKKICEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEaRVQQ 420
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLR-EALQ 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 421 LTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQE-HALS 499
Cdd:TIGR00618 237 QTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRiHTEL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 500 ASKASSMIEELEQNVCQLKQQLQESELQR-KQQLRDQENKFQMEKSHLKHIYEKKA---------HDLQSELDKGKEDTQ 569
Cdd:TIGR00618 317 QSKMRSRAKLLMKRAAHVKQQSSIEEQRRlLQTLHSQEIHIRDAHEVATSIREISCqqhtltqhiHTLQQQKTTLTQKLQ 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 570 KKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLW 649
Cdd:TIGR00618 397 SLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQ 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 650 QLEDIRQRYEqqivELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEhenQIQEFKKRDAQVIADMEA 729
Cdd:TIGR00618 477 TKEQIHLQET----RKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQ---RGEQTYAQLETSEEDVYH 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 730 QVHKLREELINVNSQRKQQLVELGLLRE------EEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSK 803
Cdd:TIGR00618 550 QLTSERKQRASLKEQMQEIQQSFSILTQcdnrskEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQD 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 804 LKQIEKEYTQKLAKSSQIIAELQTT------------ISSLKEENSQQQLAAERRLQDVRQKFEDEKKQL------IRDN 865
Cdd:TIGR00618 630 VRLHLQQCSQELALKLTALHALQLTltqervrehalsIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLaqcqtlLREL 709
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 530411712 866 DQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETKLKGLMPASLRQELEDTI 928
Cdd:TIGR00618 710 ETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTA 772
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
256-669 |
1.46e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.96 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 256 KELD---MKTKMMEAKFHEEKLKLQQKHDADVQKIlERKNNEIEELKTLyRSKQHETEETIRKLEKKVQTLIRDCQVIRE 332
Cdd:pfam15921 419 RELDdrnMEVQRLEALLKAMKSECQGQMERQMAAI-QGKNESLEKVSSL-TAQLESTKEMLRKVVEELTAKKMTLESSER 496
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 333 TKEDQIAELKKIcEQSTESLNNDWEKKlhnavaemeQEKFDLQKQHTENIQEllEDTNVRLNKMESEYMA-QTQSTNHMI 411
Cdd:pfam15921 497 TVSDLTASLQEK-ERAIEATNAEITKL---------RSRVDLKLQELQHLKN--EGDHLRNVQTECEALKlQMAEKDKVI 564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 412 KELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVK--------------ARRNTLHKEKDHLVNDYEQN 477
Cdd:pfam15921 565 EILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKilkdkkdakireleARVSDLELEKVKLVNAGSER 644
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 478 MKLLQTKYDADINLLkQEHALSASKASSMIEE---LEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKA 554
Cdd:pfam15921 645 LRAVKDIKQERDQLL-NEVKTSRNELNSLSEDyevLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDG 723
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 555 HDLQSELDKGKEDT---------QKKIHKFEEALKE--KEEQLTRvTEVQRLQAQQADAALEEFKRQVELNSekvyaeMK 623
Cdd:pfam15921 724 HAMKVAMGMQKQITakrgqidalQSKIQFLEEAMTNanKEKHFLK-EEKNKLSQELSTVATEKNKMAGELEV------LR 796
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 530411712 624 EQMEKVEADLTRSKSLREKQSKEFLwQLEDIRQRYEQQIVELKLEH 669
Cdd:pfam15921 797 SQERRLKEKVANMEVALDKASLQFA-ECQDIIQRQEQESVRLKLQH 841
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
437-787 |
1.58e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 437 QEKAELERCYQitcsELQEVKARRNTLHKEKDHLvndyEQNMKLLQTKydadinllkqehalsASKASSMIEELEQNVCQ 516
Cdd:TIGR02169 671 SEPAELQRLRE----RLEGLKRELSSLQSELRRI----ENRLDELSQE---------------LSDASRKIGEIEKEIEQ 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 517 LKQQlQESELQRKQQLRDQENKFQMEKSHLKhiyekkahDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVtevqrlQ 596
Cdd:TIGR02169 728 LEQE-EEKLKERLEELEEDLSSLEQEIENVK--------SELKELEARIEELEEDLHKLEEALNDLEARLSHS------R 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 597 AQQADAALEEFKRQVelnsekvyAEMKEQMEKVEADLTRSKSLREkqskeflwQLEDIRQRYEQQIVELKL--EHEQEKT 674
Cdd:TIGR02169 793 IPEIQAELSKLEEEV--------SRIEARLREIEQKLNRLTLEKE--------YLEKEIQELQEQRIDLKEqiKSIEKEI 856
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 675 HLLQQHNAEKDSLVRDHEREIENLEKQ---LRAANMEHENQIQEFKKRdaqvIADMEAQVHKLREELINVNSQR---KQQ 748
Cdd:TIGR02169 857 ENLNGKKEELEEELEELEAALRDLESRlgdLKKERDELEAQLRELERK----IEELEAQIEKKRKRLSELKAKLealEEE 932
|
330 340 350
....*....|....*....|....*....|....*....
gi 530411712 749 LVELGLLREEEKQRAtrEHEIVVNKLKAESEKMKIELKK 787
Cdd:TIGR02169 933 LSEIEDPKGEDEEIP--EEELSLEDVQAELQRVEEEIRA 969
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
725-955 |
2.20e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 2.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 725 ADMEAQVHKLREELiNVNSQRKQQLVELGLlREEEKQRATReheiVVNKLKAESEKMKIELKKTHAAET----EMTLEKA 800
Cdd:COG3206 114 ASREAAIERLRKNL-TVEPVKGSNVIEISY-TSPDPELAAA----VANALAEAYLEQNLELRREEARKAleflEEQLPEL 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 801 NSKLKQIEKEYTQKLAKSSQIIAELQTTISSLK-EENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQD-ELEN 878
Cdd:COG3206 188 RKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQlSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSpVIQQ 267
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530411712 879 RSNQVRCAEKKLQhkELESQEQITYIR-QEYETKLKGLMpASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGR 955
Cdd:COG3206 268 LRAQLAELEAELA--ELSARYTPNHPDvIALRAQIAALR-AQLQQEAQRILASLEAELEALQAREASLQAQLAQLEAR 342
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
692-953 |
2.25e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 2.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 692 EREIENLEKQLRAAnMEHENQIQEFKKRDAQVIAdmeAQVHKLREELINVNSQRKQQLVELgllREEEKQRATREHEIVV 771
Cdd:COG1196 199 ERQLEPLERQAEKA-ERYRELKEELKELEAELLL---LKLRELEAELEELEAELEELEAEL---EELEAELAELEAELEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 772 NKLKAESEKMKIELKKTHAAETEMTLEKANSKL---KQIEKEYTQKLAKSSQIIAELQTTISSLKE---ENSQQQLAAER 845
Cdd:COG1196 272 LRLELEELELELEEAQAEEYELLAELARLEQDIarlEERRRELEERLEELEEELAELEEELEELEEeleELEEELEEAEE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 846 RLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQvrcAEKKLQHKELESQEQITYIRQEYETKLKGLMPASLRQELE 925
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL---LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
250 260
....*....|....*....|....*...
gi 530411712 926 DTISSLKSQVNFLQKRASILQEELTTYQ 953
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEE 456
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
497-726 |
3.39e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 3.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 497 ALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHI--YEKKAHDLQSELDKGKE---DTQKK 571
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIaaLARRIRALEQELAALEAelaELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 572 IHKFEEALKEKEEQL-TRVTEVQRLQAQQADAAL------EEFKRQVELnSEKVYAEMKEQMEKVEADLTRSKSLREKQS 644
Cdd:COG4942 92 IAELRAELEAQKEELaELLRALYRLGRQPPLALLlspedfLDAVRRLQY-LKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 645 KEfLWQLEDIRQRYEQQIVELKLEhEQEKTHLLQQHNAEKDSLvrdhEREIENLEKQLRAANMEHENQIQEFKKRDAQVI 724
Cdd:COG4942 171 AE-RAELEALLAELEEERAALEAL-KAERQKLLARLEKELAEL----AAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
..
gi 530411712 725 AD 726
Cdd:COG4942 245 AA 246
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
518-672 |
6.21e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.69 E-value: 6.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 518 KQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQA 597
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKRE 109
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530411712 598 QQADAALEEFKRQvELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLwqLEDIRQRYEQQIVELKLEHEQE 672
Cdd:PRK12704 110 EELEKKEKELEQK-QQELEKKEEELEELIEEQLQELERISGLTAEEAKEIL--LEKVEEEARHEAAVLIKEIEEE 181
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
602-948 |
1.18e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 602 AALEEFKrQVELNSEK---VYAEMKEQMEKVEadltrskslREKQSKEFLWQLEDIRQRYEQQIVELKLEheqekthllq 678
Cdd:TIGR02169 174 KALEELE-EVEENIERldlIIDEKRQQLERLR---------REREKAERYQALLKEKREYEGYELLKEKE---------- 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 679 qhnaekdslvrDHEREIENLEKQLRAANMEHEN---QIQEFKKRDA---QVIADMEAQVHKL-REELINVNSQRKQQLVE 751
Cdd:TIGR02169 234 -----------ALERQKEAIERQLASLEEELEKlteEISELEKRLEeieQLLEELNKKIKDLgEEEQLRVKEKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 752 LGLLR--EEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKAnsKLKQIEKEYTQKLAKSSQIIAELQTTI 829
Cdd:TIGR02169 303 IASLErsIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRD--KLTEEYAELKEELEDLRAELEEVDKEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 830 SSLKEENSQQQLAAE-------------RRLQDVRQKFEDEKKQL---IRDNDQAIKVLQDELENRSNQVRCAEKKLQhk 893
Cdd:TIGR02169 381 AETRDELKDYREKLEklkreinelkrelDRLQEELQRLSEELADLnaaIAGIEAKINELEEEKEDKALEIKKQEWKLE-- 458
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 530411712 894 elESQEQITYIRQEYETKLKGLmpaslrQELEDTISSLKSQVNFLQKRASILQEE 948
Cdd:TIGR02169 459 --QLAADLSKYEQELYDLKEEY------DRVEKELSKLQRELAEAEAQARASEER 505
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
502-642 |
1.27e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 45.97 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 502 KASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQ-MEKSHLKhiYEKKAHDLQSELDKGKEDTQKKIHK-FEEAL 579
Cdd:PRK00409 506 EAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKeAEKLKEE--LEEKKEKLQEEEDKLLEEAEKEAQQaIKEAK 583
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530411712 580 KEKEEQLTRVTEVQRLQ-----AQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREK 642
Cdd:PRK00409 584 KEADEIIKELRQLQKGGyasvkAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQK 651
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
600-912 |
1.31e-04 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 45.77 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 600 ADAALEEFKRQVELNSEKVYAEMKEQMEKVeadltrskslREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKT----- 674
Cdd:NF033838 52 GNESQKEHAKEVESHLEKILSEIQKSLDKR----------KHTQNVALNKKLSDIKTEYLYELNVLKEKSEAELTsktkk 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 675 ------HLLQQHNAEKDSLVRDHEREIENLEKQLRAANME-HENQIQEFKKRDAQVIADMEAQVHKLREELINVN---SQ 744
Cdd:NF033838 122 eldaafEQFKKDTLEPGKKVAEATKKVEEAEKKAKDQKEEdRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEakePR 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 745 RKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEK----------EYTQK 814
Cdd:NF033838 202 DEEKIKQAKAKVESKKAEATRLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKrgvlgepatpDKKEN 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 815 LAKSSQIIAELQTTIS-SLKEEnsQQQLAAERRLQDVRQKFEDEKKQLIRD-NDQAIKVLQDELENRSNQVRCAEKKL-- 890
Cdd:NF033838 282 DAKSSDSSVGEETLPSpSLKPE--KKVAEAEKKVEEAKKKAKDQKEEDRRNyPTNTYKTLELEIAESDVKVKEAELELvk 359
|
330 340
....*....|....*....|...
gi 530411712 891 -QHKELESQEQITYIRQEYETKL 912
Cdd:NF033838 360 eEAKEPRNEEKIKQAKAKVESKK 382
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
240-948 |
1.39e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.87 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 240 KSSSFHDDHFLSRIREKELDMKTKMMEAKFH-EEKLKLQQKHDADVQKILERKNNEIEELktlyrskQHETEETIRKLEK 318
Cdd:pfam05483 66 KDSDFENSEGLSRLYSKLYKEAEKIKKWKVSiEAELKQKENKLQENRKIIEAQRKAIQEL-------QFENEKVSLKLEE 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 319 KVQT---LIRDCQVIRETkedqIAELKKICEQSTESlnndwEKKLHNAVAEMEQEKFDLQkQHTENIQELLEDTNVRLNK 395
Cdd:pfam05483 139 EIQEnkdLIKENNATRHL----CNLLKETCARSAEK-----TKKYEYEREETRQVYMDLN-NNIEKMILAFEELRVQAEN 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 396 MESEYMAQTQSTNHMIKELEARVQQLTGEAENsnlQRQKLIQEKAELERCYQITCSELQEVKARRNTLhKEKDHLVNDYE 475
Cdd:pfam05483 209 ARLEMHFKLKEDHEKIQHLEEEYKKEINDKEK---QVSLLLIQITEKENKMKDLTFLLEESRDKANQL-EEKTKLQDENL 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 476 QNMKLLQTKYDADINLLKQEHALSASKASSMIEELE---QNVCQLKQQlQESELQRKQQLRDQENKFQMEKSHLKHIYEK 552
Cdd:pfam05483 285 KELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQiatKTICQLTEE-KEAQMEELNKAKAAHSFVVTEFEATTCSLEE 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 553 KAHDLQSELDKGKEdtQKKIHKFEEALKEKE-EQLTRVTEVQRLQAQQADAALEEfkRQVELNSEKVYAEMKEQMEKVEA 631
Cdd:pfam05483 364 LLRTEQQRLEKNED--QLKIITMELQKKSSElEEMTKFKNNKEVELEELKKILAE--DEKLLDEKKQFEKIAEELKGKEQ 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 632 DLTRSKSLREKQSKEFLWQLEDIR---QRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANME 708
Cdd:pfam05483 440 ELIFLLQAREKEIHDLEIQLTAIKtseEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQ 519
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 709 HE-NQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQL--VELGLLREEEKQRATREHEIVVNKLKAESEKMKIEL 785
Cdd:pfam05483 520 EDiINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGdeVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNL 599
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 786 KKTHAAETEMT--LEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEE-----NSQQQLAAERRLQDVRQKFEDEK 858
Cdd:pfam05483 600 KKQIENKNKNIeeLHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKfeeiiDNYQKEIEDKKISEEKLLEEVEK 679
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 859 KQLIRDndQAIKvLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYET--KLKGLMPASLRQELEDTISSLKSQVN 936
Cdd:pfam05483 680 AKAIAD--EAVK-LQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGlyKNKEQEQSSAKAALEIELSNIKAELL 756
|
730
....*....|..
gi 530411712 937 FLQKRASILQEE 948
Cdd:pfam05483 757 SLKKQLEIEKEE 768
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
650-862 |
1.92e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 650 QLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKD-----SLVRDHEREIENLEKQLRAANMEH---ENQIQEFKKRDA 721
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRiaalaRRIRALEQELAALEAELAELEKEIaelRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 722 QVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKAN 801
Cdd:COG4942 108 ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEER 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530411712 802 SKLKQIEKEYTQKLAKSS-------QIIAELQTTISSLKEE-NSQQQLAAERRLQDVRQKFEDEKKQLI 862
Cdd:COG4942 188 AALEALKAERQKLLARLEkelaelaAELAELQQEAEELEALiARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
308-947 |
2.64e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.04 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 308 ETEETIRKLEKKVQTLIRDCQ----VIRETKEDQIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEKfdlQKQHTENIQ 383
Cdd:TIGR01612 1023 EKEKATNDIEQKIEDANKNIPnieiAIHTSIYNIIDEIEKEIGKNIELLNKEILEEAEINITNFNEIK---EKLKHYNFD 1099
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 384 ELLEDTNVR----LNKMESEYMAQTQSTNHMIKELEarvqQLTGEAENSnLQRQKLIQEKAELERCYQITCSELQEVKAR 459
Cdd:TIGR01612 1100 DFGKEENIKyadeINKIKDDIKNLDQKIDHHIKALE----EIKKKSENY-IDEIKAQINDLEDVADKAISNDDPEEIEKK 1174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 460 RNTLHKEKDHLVNDYEQNMKLLQ--TKYDADINLLKQEHALSAS------------------KASSMIEELEQNVCQLKQ 519
Cdd:TIGR01612 1175 IENIVTKIDKKKNIYDEIKKLLNeiAEIEKDKTSLEEVKGINLSygknlgklflekideekkKSEHMIKAMEAYIEDLDE 1254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 520 QLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQR--LQA 597
Cdd:TIGR01612 1255 IKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDINDIKKELQKnlLDA 1334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 598 QQADAALEEFKRQV-------ELNS-EKVYAEMKEQMEKVE-------ADLTRSKSLREKQSKEFlwQLEDIRQRYEQQI 662
Cdd:TIGR01612 1335 QKHNSDINLYLNEIaniynilKLNKiKKIIDEVKEYTKEIEennknikDELDKSEKLIKKIKDDI--NLEECKSKIESTL 1412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 663 VELKLEHEQEKTHLLQQHNAEKDSlvrdhereieNLEKQLRAANMEHENQIQEFKKrdaqviadmeaqvhklreelINVN 742
Cdd:TIGR01612 1413 DDKDIDECIKKIKELKNHILSEES----------NIDTYFKNADENNENVLLLFKN--------------------IEMA 1462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 743 SQRKQQLVELgllreeEKQRATREHEIVVNKLKAESEKMKieLKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSS--- 819
Cdd:TIGR01612 1463 DNKSQHILKI------KKDNATNDHDFNINELKEHIDKSK--GCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSala 1534
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 820 ------QIIAELQTTISSLKEENSQQQLAAERRLQDVRQ------KFEDEKKQLIRDNDQAIKVLQ--DELENRSNQVRC 885
Cdd:TIGR01612 1535 iknkfaKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEikkekfRIEDDAAKNDKSNKAAIDIQLslENFENKFLKISD 1614
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530411712 886 AEKKLQH--KELESQEQ----ITYIRQEYETKLKGLMPASLRQELEdtisSLKSQVNFLQKRASILQE 947
Cdd:TIGR01612 1615 IKKKINDclKETESIEKkissFSIDSQDTELKENGDNLNSLQEFLE----SLKDQKKNIEDKKKELDE 1678
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
390-848 |
2.77e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.94 E-value: 2.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 390 NVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEA--ENSNlQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEK 467
Cdd:COG3096 237 ALRENRMTLEAIRVTQSDRDLFKHLITEATNYVAADymRHAN-ERRELSERALELRRELFGARRQLAEEQYRLVEMAREL 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 468 DHLvndyEQNMKLLQTKYDAD---INLLkqehaLSASKASSMIEELEQNVCQLKQQLQESELQRKqqlrdqenkfqmEKS 544
Cdd:COG3096 316 EEL----SARESDLEQDYQAAsdhLNLV-----QTALRQQEKIERYQEDLEELTERLEEQEEVVE------------EAA 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 545 HLKHIYEKKAHDLQSELDKGKedTQkkIHKFEEALkekEEQLTRVtevqrLQAQQADAALEEFKRQVEL------NSEKV 618
Cdd:COG3096 375 EQLAEAEARLEAAEEEVDSLK--SQ--LADYQQAL---DVQQTRA-----IQYQQAVQALEKARALCGLpdltpeNAEDY 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 619 YAEMKEQMEKVEADLtrsKSLREKQSKEflwqlEDIRQRYEQ--QIVELKLEH-----------EQEKTHLLQQHNAEKD 685
Cdd:COG3096 443 LAAFRAKEQQATEEV---LELEQKLSVA-----DAARRQFEKayELVCKIAGEversqawqtarELLRRYRSQQALAQRL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 686 SLVRDHEREIENLEKQLRAAnmehENQIQEFKKRDAQVIADmeaqvhklREELINVNSQRKQQLVELG-LLREEEKQRAT 764
Cdd:COG3096 515 QQLRAQLAELEQRLRQQQNA----ERLLEEFCQRIGQQLDA--------AEELEELLAELEAQLEELEeQAAEAVEQRSE 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 765 REHEivvnkLKAESEKMKiELKKTHAAetemtLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAE 844
Cdd:COG3096 583 LRQQ-----LEQLRARIK-ELAARAPA-----WLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAA 651
|
....
gi 530411712 845 RRLQ 848
Cdd:COG3096 652 RKQA 655
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
279-761 |
4.23e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 4.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 279 KHDADVQKILERKNNEIEELKTLYrskqhetEETIRKLEKKVQTLIRDCQVIReTKEDQIAELKKICEQSTESLNNDWEK 358
Cdd:pfam15921 317 RQLSDLESTVSQLRSELREAKRMY-------EDKIEELEKQLVLANSELTEAR-TERDQFSQESGNLDDQLQKLLADLHK 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 359 KLHNAVAEMEQEK--FDLQKQHTENIQEL---LEDTNVRLNKME-------------------------------SEYMA 402
Cdd:pfam15921 389 REKELSLEKEQNKrlWDRDTGNSITIDHLrreLDDRNMEVQRLEallkamksecqgqmerqmaaiqgkneslekvSSLTA 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 403 QTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDyEQNMKLLQ 482
Cdd:pfam15921 469 QLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE-GDHLRNVQ 547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 483 TKYDAdinlLKqehaLSASKASSMIEELEQNVCQLKQQLQE------SELQRKQQLRDQENKFQMEKSHLKHIYEKKAHD 556
Cdd:pfam15921 548 TECEA----LK----LQMAEKDKVIEILRQQIENMTQLVGQhgrtagAMQVEKAQLEKEINDRRLELQEFKILKDKKDAK 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 557 LQsELDKGKEDTQKKIHKFEEAlkeKEEQLTRVTEVQrlqaQQADAALEEFKR-QVELNSekvyaeMKEQMEKVEADLTR 635
Cdd:pfam15921 620 IR-ELEARVSDLELEKVKLVNA---GSERLRAVKDIK----QERDQLLNEVKTsRNELNS------LSEDYEVLKRNFRN 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 636 SKSLREKQSKEFLWQLEDIRQRYEQQIVELKLE-----HEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEhe 710
Cdd:pfam15921 686 KSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMegsdgHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKE-- 763
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 530411712 711 nqiQEFKKRDAqviadmeaqvHKLREELINVNSQRKQQLVELGLLREEEKQ 761
Cdd:pfam15921 764 ---KHFLKEEK----------NKLSQELSTVATEKNKMAGELEVLRSQERR 801
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
621-950 |
4.59e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 44.18 E-value: 4.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 621 EMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLL-QQHNAEKDSLVRDHEREIENLE 699
Cdd:COG5185 180 EIFGLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKgFQDPESELEDLAQTSDKLEKLV 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 700 KQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELinvnSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESE 779
Cdd:COG5185 260 EQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKI----AEYTKSIDIKKATESLEEQLAAAEAEQELEESKRETE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 780 KMKIELKKTHAAETEMTLEKANSKLKQIE-KEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEK 858
Cdd:COG5185 336 TGIQNLTAEIEQGQESLTENLEAIKEEIEnIVGEVELSKSSEELDSFKDTIESTKESLDEIPQNQRGYAQEILATLEDTL 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 859 KQLIRDNDQ---AIKVLQDELENRSNQVRCAEKKLQHKELESQEqITYIRQEYETKLKGLMPASLRQELEDTISSLKSQV 935
Cdd:COG5185 416 KAADRQIEElqrQIEQATSSNEEVSKLLNELISELNKVMREADE-ESQSRLEEAYDEINRSVRSKKEDLNEELTQIESRV 494
|
330
....*....|....*
gi 530411712 936 NFLQKRASILQEELT 950
Cdd:COG5185 495 STLKATLEKLRAKLE 509
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
251-470 |
6.81e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.46 E-value: 6.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 251 SRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQK----ILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTL--- 323
Cdd:PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKkngeNIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIedp 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 324 ------IRDCQVIRETKEDQIAELKK------ICEQSTESLNNDWEKklhnaVAEMEQEKFDLQKQHteniqELLEDTNV 391
Cdd:PHA02562 254 saalnkLNTAAAKIKSKIEQFQKVIKmyekggVCPTCTQQISEGPDR-----ITKIKDKLKELQHSL-----EKLDTAID 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 392 RLNKMESEYMAQTQSTNHMIKELEARVQQLTGEaENSNLQRQKLIQE--------KAELERCYQitcsELQEVKARRNTL 463
Cdd:PHA02562 324 ELEEIMDEFNEQSKKLLELKNKISTNKQSLITL-VDKAKKVKAAIEElqaefvdnAEELAKLQD----ELDKIVKTKSEL 398
|
....*..
gi 530411712 464 HKEKDHL 470
Cdd:PHA02562 399 VKEKYHR 405
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
250-938 |
7.15e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 7.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 250 LSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQV 329
Cdd:TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 330 iretkEDQIAELKKiceqsteslnndwekklhnavaeMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQtqstnh 409
Cdd:TIGR00606 268 -----DNEIKALKS-----------------------RKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRT------ 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 410 mIKELEARVQQLTGEAENSNLQRQKLIQEKAELER---CYQITCSELQEVKARRNTLHKE-KDHLVNDYEQNMKLLQTKY 485
Cdd:TIGR00606 314 -VREKERELVDCQRELEKLNKERRLLNQEKTELLVeqgRLQLQADRHQEHIRARDSLIQSlATRLELDGFERGPFSERQI 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 486 DADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKfqmekshlKHIYEKKAHDLQSELDKGK 565
Cdd:TIGR00606 393 KNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELK--------KEILEKKQEELKFVIKELQ 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 566 --EDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQ 643
Cdd:TIGR00606 465 qlEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDK 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 644 SKEFlWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDslVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQV 723
Cdd:TIGR00606 545 MDKD-EQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKE--INQTRDRLAKLNKELASLEQNKNHINNELESKEEQL 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 724 IA------------DMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIV-----VNKLKAESEKMKIELK 786
Cdd:TIGR00606 622 SSyedklfdvcgsqDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCpvcqrVFQTEAELQEFISDLQ 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 787 -KTHAAETEmtLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQlAAERRLQDVRQKFEDEKKQL--IR 863
Cdd:TIGR00606 702 sKLRLAPDK--LKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQ-KVNRDIQRLKNDIEEQETLLgtIM 778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 864 DNDQAIKVLQDE---LENRSNQVRCAEKKLQHKELESQ-----EQITYIRQEYETK--------LKGLMPASLRQELEDT 927
Cdd:TIGR00606 779 PEEESAKVCLTDvtiMERFQMELKDVERKIAQQAAKLQgsdldRTVQQVNQEKQEKqheldtvvSKIELNRKLIQDQQEQ 858
|
730
....*....|.
gi 530411712 928 ISSLKSQVNFL 938
Cdd:TIGR00606 859 IQHLKSKTNEL 869
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
281-675 |
8.54e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 8.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 281 DADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEqsteslnndwekKL 360
Cdd:TIGR00606 686 VFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRN------------KL 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 361 HNAVAEMEQEKFDLQKQHTE-----NIQELLEDTNVRLNKMESEYMaQTQSTNHMIKELEAR---------VQQLTGEAE 426
Cdd:TIGR00606 754 QKVNRDIQRLKNDIEEQETLlgtimPEEESAKVCLTDVTIMERFQM-ELKDVERKIAQQAAKlqgsdldrtVQQVNQEKQ 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 427 NSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLlkQEHALSASKASSM 506
Cdd:TIGR00606 833 EKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEV--QSLIREIKDAKEQ 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 507 IEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKaHDLQSELDKGKEDTQKK----IHKFEEALKEK 582
Cdd:TIGR00606 911 DSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM-KDIENKIQDGKDDYLKQketeLNTVNAQLEEC 989
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 583 EEQLTRVTEVQRLQAQQADAA-LEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLE---DIRQRY 658
Cdd:TIGR00606 990 EKHQEKINEDMRLMRQDIDTQkIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEeniDLIKRN 1069
|
410
....*....|....*..
gi 530411712 659 EQQIVELKLEHEQEKTH 675
Cdd:TIGR00606 1070 HVLALGRQKGYEKEIKH 1086
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
399-767 |
9.86e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 9.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 399 EYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNM 478
Cdd:pfam02463 167 LKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 479 KLLQTKYDADINLLKQEHALSASKASSMIEELEQnvcqlkQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQ 558
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKE------KKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 559 SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKS 638
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 639 LREKQSKEFLWQLEDiRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKK 718
Cdd:pfam02463 401 SEEEKEAQLLLELAR-QLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQL 479
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 530411712 719 RDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREH 767
Cdd:pfam02463 480 VKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAH 528
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
251-835 |
1.07e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 251 SRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTlyrsKQHETEETIRKLEKKVQTLIRDcqvi 330
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQ----QIKDLNDKLKKNKDKINKLNSD---- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 331 retkedqiaeLKKICEQSteSLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNvRLNKMESEYmaqtQSTNHM 410
Cdd:TIGR04523 105 ----------LSKINSEI--KNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEK-ELEKLNNKY----NDLKKQ 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 411 IKELEARVQQLTGEAENSNLQRQKLIQEKAELErcyqITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDaDIN 490
Cdd:TIGR04523 168 KEELENELNLLEKEKLNIQKNIDKIKNKLLKLE----LLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQ-EIN 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 491 LLKQEHALSASKASSMIEELEQNVCQLKQQLQESElQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSEL-------DK 563
Cdd:TIGR04523 243 EKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELE-QNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELkselknqEK 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 564 GKEDTQKKIHKFEEA---LKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVE-LNSEK-VYAEMKEQMEKVEADLTRSKS 638
Cdd:TIGR04523 322 KLEEIQNQISQNNKIisqLNEQISQLKKELTNSESENSEKQRELEEKQNEIEkLKKENqSYKQEIKNLESQINDLESKIQ 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 639 LREKQSKEFLWQLEDIRQRY---EQQIVELKLEHEQEKTHL--LQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQI 713
Cdd:TIGR04523 402 NQEKLNQQKDEQIKKLQQEKellEKEIERLKETIIKNNSEIkdLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIK 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 714 QEFK------KRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKK 787
Cdd:TIGR04523 482 QNLEqkqkelKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEK 561
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 530411712 788 ---------THAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEE 835
Cdd:TIGR04523 562 eideknkeiEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
398-810 |
1.07e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.14 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 398 SEYMAQTQSTNHMIKELEArvqqltgEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLhkEKDHLVNDYEQN 477
Cdd:COG5022 806 LGSRKEYRSYLACIIKLQK-------TIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLL--KKETIYLQSAQR 876
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 478 MKLLQTKYDAdinllKQEHALSASKASSMIEELEQNVCQLKQQLQESELQrkqqlrdqENKFQMEKS-HLKHIYEKKAHD 556
Cdd:COG5022 877 VELAERQLQE-----LKIDVKSISSLKLVNLELESEIIELKKSLSSDLIE--------NLEFKTELIaRLKKLLNNIDLE 943
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 557 LQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKV-----YAEMKEQMEKVEA 631
Cdd:COG5022 944 EGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSkqygaLQESTKQLKELPV 1023
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 632 DLTRSKSL--REKQSKEFLWQLEDIR----------QRYEQQIVELKLEHEQEKTHLLQQHNAEKdslVRDHEREIEnlE 699
Cdd:COG5022 1024 EVAELQSAskIISSESTELSILKPLQklkgllllenNQLQARYKALKLRRENSLLDDKQLYQLES---TENLLKTIN--V 1098
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 700 KQLRAANMEHENQIQEFKKRDAQVIA-DMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAES 778
Cdd:COG5022 1099 KDLEVTNRNLVKPANVLQFIVAQMIKlNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALS 1178
|
410 420 430
....*....|....*....|....*....|..
gi 530411712 779 EKmkielKKTHAAETEMTLEKANSKLKQIEKE 810
Cdd:COG5022 1179 EK-----RLYQSALYDEKSKLSSSEVNDLKNE 1205
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
479-949 |
1.12e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 479 KLLQTKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQ 558
Cdd:TIGR00606 169 KALKQKFDEIFSATRYIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 559 --SELDKGKEDTQKKIHKFEEALKEKEEqltrvTEVQRlqaqqadaalEEFKRQVELNSEKVYAEMKEQMEKVEADltRS 636
Cdd:TIGR00606 249 plKNRLKEIEHNLSKIMKLDNEIKALKS-----RKKQM----------EKDNSELELKMEKVFQGTDEQLNDLYHN--HQ 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 637 KSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEH----ENQ 712
Cdd:TIGR00606 312 RTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERgpfsERQ 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 713 IQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELgllrEEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAE 792
Cdd:TIGR00606 392 IKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEI----RDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 793 TEMtlekanSKLKQIEKEYTQKLAKSSQIiaelqttissLKEENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQaikvl 872
Cdd:TIGR00606 468 GSS------DRILELDQELRKAERELSKA----------EKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQ----- 526
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530411712 873 qdelENRSNQVRCAEKKLQHKELESQEQITYIRQEYETKLKGLMPA-SLRQELEDTISSLKSQVNFLQKRASILQEEL 949
Cdd:TIGR00606 527 ----LNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYfPNKKQLEDWLHSKSKEINQTRDRLAKLNKEL 600
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
507-738 |
1.27e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 507 IEELEQNVCQLKQQLQ-----ESELQRKQQLRDQENKFQMEKSHLKH-IYEKKAHDLQSELDKGKEDTQKKIHKFEEALK 580
Cdd:COG4913 237 LERAHEALEDAREQIEllepiRELAERYAAARERLAELEYLRAALRLwFAQRRLELLEAELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 581 EKEEQLTRVTEVQRLQAQQADAALEEFKRQVElnsekvyaemkeqmekveaDLTRSKSLREKQSKEFLWQLEDIRQRYEQ 660
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRLEQLEREIE-------------------RLERELEERERRRARLEALLAALGLPLPA 377
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530411712 661 QIVELKLEHEQEKtHLLQQHNAEKDSLvRDHEREIENLEKQLRAANMEHENQIQEFKKRDaqviADMEAQVHKLREEL 738
Cdd:COG4913 378 SAEEFAALRAEAA-ALLEALEEELEAL-EEALAEAEAALRDLRRELRELEAEIASLERRK----SNIPARLLALRDAL 449
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
567-716 |
1.46e-03 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 42.17 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 567 DTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAAL--EEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQs 644
Cdd:COG2268 211 ETEIAIAQANREAEEAELEQEREIETARIAEAEAELAKkkAEERREAETARAEAEAAYEIAEANAEREVQRQLEIAERE- 289
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 530411712 645 KEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEF 716
Cdd:COG2268 290 REIELQEKEAEREEAELEADVRKPAEAEKQAAEAEAEAEAEAIRAKGLAEAEGKRALAEAWNKLGDAAILLM 361
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
559-892 |
1.68e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.27 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 559 SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKS 638
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 639 LREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKthllQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKK 718
Cdd:pfam02463 245 LLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEK----EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 719 RDAQVIADMEAQVHKLREELINV--NSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMT 796
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELEKElkELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 797 LEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQL-IRDNDQAIKVLQDE 875
Cdd:pfam02463 401 SEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELeLKKSEDLLKETQLV 480
|
330
....*....|....*..
gi 530411712 876 LENRSNQVRCAEKKLQH 892
Cdd:pfam02463 481 KLQEQLELLLSRQKLEE 497
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
328-907 |
1.89e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 328 QVIRETKEDQIAELKKICEQST---ESLNNDWEKKLHNAVAEMEQ--EKFDLQKQHTENIQELLEDTNVRLNKMESEYMA 402
Cdd:pfam01576 319 QELRSKREQEVTELKKALEEETrshEAQLQEMRQKHTQALEELTEqlEQAKRNKANLEKAKQALESENAELQAELRTLQQ 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 403 QTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQ 482
Cdd:pfam01576 399 AKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQ 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 483 TKYDADINLLKQEHALSASKASSM---------IEELEQNVCQLKQQLQES--------------ELQRKQQLRDQENKF 539
Cdd:pfam01576 479 EETRQKLNLSTRLRQLEDERNSLQeqleeeeeaKRNVERQLSTLQAQLSDMkkkleedagtlealEEGKKRLQRELEALT 558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 540 QM--EKSHLKHIYEKKAHDLQSELDKGKEDTQ----------KKIHKFEEALKE-------------KEEQLTRVTEVQR 594
Cdd:pfam01576 559 QQleEKAAAYDKLEKTKNRLQQELDDLLVDLDhqrqlvsnleKKQKKFDQMLAEekaisaryaeerdRAEAEAREKETRA 638
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 595 LQAQQADAALEEFKRQVELNSEKVYAEM------KEQMEKVEADLTRSKSLREKQSKEFLWQL----------EDIRQRY 658
Cdd:pfam01576 639 LSLARALEEALEAKEELERTNKQLRAEMedlvssKDDVGKNVHELERSKRALEQQVEEMKTQLeeledelqatEDAKLRL 718
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 659 EQQIVELKLEHEQEKTHLLQQHNAEKDSL---VRDHEREIEN---------------------LEKQLRAANMEHENQIQ 714
Cdd:pfam01576 719 EVNMQALKAQFERDLQARDEQGEEKRRQLvkqVRELEAELEDerkqraqavaakkkleldlkeLEAQIDAANKGREEAVK 798
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 715 EFKKrdaqviadMEAQVHKLREELINVNSQRKQQLVelgLLREEEKQRATREHEIVV---NKLKAESEKMKIELKKTHAA 791
Cdd:pfam01576 799 QLKK--------LQAQMKDLQRELEEARASRDEILA---QSKESEKKLKNLEAELLQlqeDLAASERARRQAQQERDELA 867
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 792 ETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKE---------ENSQQQLAAERRLQdvrQKFEDEKKQLI 862
Cdd:pfam01576 868 DEIASGASGKSALQDEKRRLEARIAQLEEELEEEQSNTELLNDrlrkstlqvEQLTTELAAERSTS---QKSESARQQLE 944
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 530411712 863 RDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQE 907
Cdd:pfam01576 945 RQNKELKAKLQEMEGTVKSKFKSSIAALEAKIAQLEEQLEQESRE 989
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
303-834 |
2.36e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 303 RSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESLN-NDWEKKLHNAVAEMEQEKFDL------Q 375
Cdd:TIGR00606 583 SKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGsQDEESDLERLKEEIEKSSKQRamlagaT 662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 376 KQHTENIQELLEDTNV------RLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQIT 449
Cdd:TIGR00606 663 AVYSQFITQLTDENQSccpvcqRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLK 742
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 450 CSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTkYDADINLLK--QEHALSASKASSMIEELEQNVCQLKQQLQESELQ 527
Cdd:TIGR00606 743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGT-IMPEEESAKvcLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD 821
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 528 RKQQlrdQENKFQMEKSHLKHIYEKKAHDLQseldKGKEDTQKKIHKFEEALKE-KEEQLTRVTEVQRlqAQQADAALEE 606
Cdd:TIGR00606 822 RTVQ---QVNQEKQEKQHELDTVVSKIELNR----KLIQDQQEQIQHLKSKTNElKSEKLQIGTNLQR--RQQFEEQLVE 892
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 607 FKRQVElnseKVYAEMKEQMEKVEADLTRSKSLREKQsKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNA---E 683
Cdd:TIGR00606 893 LSTEVQ----SLIREIKDAKEQDSPLETFLEKDQQEK-EELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKiqdG 967
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 684 KDSLVRDHEREIENLEKQLrAANMEHENQIQEFKKRDAQVIADMEAQ---------VHKLREELINVNSQRKQQLVELGL 754
Cdd:TIGR00606 968 KDDYLKQKETELNTVNAQL-EECEKHQEKINEDMRLMRQDIDTQKIQerwlqdnltLRKRENELKEVEEELKQHLKEMGQ 1046
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 755 LREEEKQRATreheivvNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKE 834
Cdd:TIGR00606 1047 MQVLQMKQEH-------QKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKD 1119
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
386-627 |
2.37e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 386 LEDTNVRLNKME---SEYMAQTQSTNHMIKELEARVQQLTGEAENSN-LQRQKLIQEKAELE-------------RCYQI 448
Cdd:PRK04863 839 LRQLNRRRVELEralADHESQEQQQRSQLEQAKEGLSALNRLLPRLNlLADETLADRVEEIReqldeaeeakrfvQQHGN 918
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 449 TCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQT---KYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESE 525
Cdd:PRK04863 919 ALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDakqQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAE 998
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 526 LQR---KQQLRDQENKFQMekshlkhiYEKKAHDLQSELDKGKEDTQKKIHKF-----------EEALKEKEEQL----- 586
Cdd:PRK04863 999 QERtraREQLRQAQAQLAQ--------YNQVLASLKSSYDAKRQMLQELKQELqdlgvpadsgaEERARARRDELharls 1070
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 530411712 587 ---TRVTEVQRlQAQQADAALEEFKRQVELnSEKVYAEMKEQME 627
Cdd:PRK04863 1071 anrSRRNQLEK-QLTFCEAEMDNLTKKLRK-LERDYHEMREQVV 1112
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
509-784 |
2.42e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 509 ELEQNVCQLkQQLQESELQRKQQLrDQENKFQMEKSHLK-HIYEKKAHDLQSELDKGKEDtQKKIHKFEEALKEKEEQLT 587
Cdd:COG3096 851 ELAQHRAQE-QQLRQQLDQLKEQL-QLLNKLLPQANLLAdETLADRLEELREELDAAQEA-QAFIQQHGKALAQLEPLVA 927
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 588 RV----TEVQRLQA--QQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQsKEFLWQLEDIRQRYEQQ 661
Cdd:COG3096 928 VLqsdpEQFEQLQAdyLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDAVGLLGENSDLNEKL-RARLEQAEEARREAREQ 1006
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 662 ivelkLEHEQEKthlLQQHNAEKDSLVRDHereienlekqlRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREEL--- 738
Cdd:COG3096 1007 -----LRQAQAQ---YSQYNQVLASLKSSR-----------DAKQQTLQELEQELEELGVQADAEAEERARIRRDELhee 1067
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 530411712 739 INVNSQRKQQLvelgllreeEKQRATREHEI--VVNKLKAESEKMKIE 784
Cdd:COG3096 1068 LSQNRSRRSQL---------EKQLTRCEAEMdsLQKRLRKAERDYKQE 1106
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
397-748 |
2.53e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 397 ESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSEL--QEVKARRNTLHKEKDHLVNDY 474
Cdd:pfam17380 267 ENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKarQAEMDRQAAIYAEQERMAMER 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 475 EQNM-KLLQTKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQL-QESELQRKQQLRDQEN--KFQMEKSHLKHIY 550
Cdd:pfam17380 347 ERELeRIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVrQELEAARKVKILEEERqrKIQQQKVEMEQIR 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 551 EKKAHDLQSELDKGKEDTQKKIHKFeealkeKEEQLTRVTEVQRLQAQQAdaalEEFKRQVELNsekvyaemKEQMEKVE 630
Cdd:pfam17380 427 AEQEEARQREVRRLEEERAREMERV------RLEEQERQQQVERLRQQEE----ERKRKKLELE--------KEKRDRKR 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 631 ADLTRSKSLREkqskeflwQLEDIRQryeqqivelKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHE 710
Cdd:pfam17380 489 AEEQRRKILEK--------ELEERKQ---------AMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER 551
|
330 340 350
....*....|....*....|....*....|....*...
gi 530411712 711 NQIQEFKKRDAQVIADMEAqVHKLREELINVNSQRKQQ 748
Cdd:pfam17380 552 RRIQEQMRKATEERSRLEA-MEREREMMRQIVESEKAR 588
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
650-799 |
2.55e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 650 QLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHERE-------IENLEKQLRAANMEHENQIQEFKKRDAQ 722
Cdd:PRK12704 32 KIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKElrerrneLQKLEKRLLQKEENLDRKLELLEKREEE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 723 V------IADMEAQVHKLREELINVNSQRKQQLVEL-GLLREEEKQratreheIVVNKLKAESEKMKIELKKTHAAETEM 795
Cdd:PRK12704 112 LekkekeLEQKQQELEKKEEELEELIEEQLQELERIsGLTAEEAKE-------ILLEKVEEEARHEAAVLIKEIEEEAKE 184
|
....
gi 530411712 796 TLEK 799
Cdd:PRK12704 185 EADK 188
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
593-748 |
2.56e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 41.62 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 593 QRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKV-EADLTRSKSLREKQSKEFlwqlEDIRQRYEQqivelkLEHEQ 671
Cdd:PRK12705 28 RQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRErNQQRQEARREREELQREE----ERLVQKEEQ------LDARA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 672 EKTHLLQQHNAEKDSLVRDHEREIENLEKQL-----RAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRK 746
Cdd:PRK12705 98 EKLDNLENQLEEREKALSARELELEELEKQLdnelyRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERK 177
|
..
gi 530411712 747 QQ 748
Cdd:PRK12705 178 AQ 179
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
502-861 |
2.80e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 502 KASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKE 581
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 582 KEEQLTRVTEVQRLQAQQADA--ALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEflwqLEDIRQRYE 659
Cdd:COG4717 155 LEELRELEEELEELEAELAELqeELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEE----LEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 660 QQIVELKLEHEQEK----------------------------------------------------THLLQQHNAEKDSL 687
Cdd:COG4717 231 QLENELEAAALEERlkearlllliaaallallglggsllsliltiagvlflvlgllallflllareKASLGKEAEELQAL 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 688 VRDHEREIENLEKQLRAANMEHENQIQEFKK--RDAQVIADMEAQVHKLREEL-INVNSQRKQQLVELG----------- 753
Cdd:COG4717 311 PALEELEEEELEELLAALGLPPDLSPEELLEllDRIEELQELLREAEELEEELqLEELEQEIAALLAEAgvedeeelraa 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 754 LLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELqttisslk 833
Cdd:COG4717 391 LEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAEL-------- 462
|
410 420
....*....|....*....|....*...
gi 530411712 834 eensqQQLAAERRLQDVRQKFEDEKKQL 861
Cdd:COG4717 463 -----EQLEEDGELAELLQELEELKAEL 485
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
251-862 |
3.06e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 3.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 251 SRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETE---ETIRKLEKKVQTLIRDC 327
Cdd:TIGR02169 357 EEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQrlsEELADLNAAIAGIEAKI 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 328 QVIRETKEDQIAELKKIcEQSTESLNNDWEK------KLHNAVAEMEQEKFDLQKQHTEniqelLEDTNVRLNKMESEYM 401
Cdd:TIGR02169 437 NELEEEKEDKALEIKKQ-EWKLEQLAADLSKyeqelyDLKEEYDRVEKELSKLQRELAE-----AEAQARASEERVRGGR 510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 402 AQTQSTNHMIKELEARVQQLTG---------EAENSNLQRQKLIQEKAELERCYQI---------TCSELQEVKARRNTL 463
Cdd:TIGR02169 511 AVEEVLKASIQGVHGTVAQLGSvgeryataiEVAAGNRLNNVVVEDDAVAKEAIELlkrrkagraTFLPLNKMRDERRDL 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 464 HKEKDHLVNDYEQNMKLLQTKYDA-------------DINLLKQ---------------EHALSASKASSMIEELEQNVC 515
Cdd:TIGR02169 591 SILSEDGVIGFAVDLVEFDPKYEPafkyvfgdtlvveDIEAARRlmgkyrmvtlegelfEKSGAMTGGSRAPRGGILFSR 670
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 516 QLKQQLQESElQRKQQLRDQENKFQMEKSHLkhiyEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRL 595
Cdd:TIGR02169 671 SEPAELQRLR-ERLEGLKRELSSLQSELRRI----ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEED 745
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 596 QAQQADAALEEFKRQVELNSEKVY-----AEMKEQMEKVEADLTRSkslREKQSKEFLWQLEDIRQRYEQQIVEL--KLE 668
Cdd:TIGR02169 746 LSSLEQEIENVKSELKELEARIEEleedlHKLEEALNDLEARLSHS---RIPEIQAELSKLEEEVSRIEARLREIeqKLN 822
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 669 HEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAanmehenqIQEFKKRDAQVIADMEAQVHKLREELINVNSQRkqq 748
Cdd:TIGR02169 823 RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN--------LNGKKEELEEELEELEAALRDLESRLGDLKKER--- 891
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 749 lvelgllreEEKQRATREHEIVVNKLKAEsekmkIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQI------- 821
Cdd:TIGR02169 892 ---------DELEAQLRELERKIEELEAQ-----IEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEElsledvq 957
|
650 660 670 680
....*....|....*....|....*....|....*....|....*....
gi 530411712 822 --IAELQTTISSLKEENS---QQQLAAERR---LQDVRQKFEDEKKQLI 862
Cdd:TIGR02169 958 aeLQRVEEEIRALEPVNMlaiQEYEEVLKRldeLKEKRAKLEEERKAIL 1006
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
252-523 |
3.07e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 252 RIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELktlyRSKQHETEETIRKLEKKVQTLIRDCQVIR 331
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA----EEELAEAEAEIEELEAQIEQLKEELKALR 802
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 332 ETKEDQIAELKkicEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMI 411
Cdd:TIGR02168 803 EALDELRAELT---LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 412 KE---LEARVQQLTGEAENSNLQRQKLIQEKAELERcyqitcsELQEVKARRNTLHKEKDHLvndyEQNMKLLQTKYDAD 488
Cdd:TIGR02168 880 NErasLEEALALLRSELEELSEELRELESKRSELRR-------ELEELREKLAQLELRLEGL----EVRIDNLQERLSEE 948
|
250 260 270
....*....|....*....|....*....|....*
gi 530411712 489 INLLKQEHALSASKASSMIEELEQNVCQLKQQLQE 523
Cdd:TIGR02168 949 YSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
390-768 |
3.48e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 3.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 390 NVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEA--ENSNlQRQKLIQEKAELERcyqitcselqEVKARRNTLHKEK 467
Cdd:PRK04863 238 ALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADymRHAN-ERRVHLEEALELRR----------ELYTSRRQLAAEQ 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 468 DHLVN------DYEQNMKLLQTKY-DADINL-LKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKF 539
Cdd:PRK04863 307 YRLVEmarelaELNEAESDLEQDYqAASDHLnLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 540 QMEKSHLK------------HIYEKKA---HDLQSELDKGKED------TQKKIHKFEEALKEKEEQLTRvtevQRLQAQ 598
Cdd:PRK04863 387 AAEEEVDElksqladyqqalDVQQTRAiqyQQAVQALERAKQLcglpdlTADNAEDWLEEFQAKEQEATE----ELLSLE 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 599 Q----ADAALEEFkrqvelnsEKVYAEMKeqmeKVEADLTRSKSLRekqskeflWQLEDIRQRYEQQivelkleHEQEKT 674
Cdd:PRK04863 463 QklsvAQAAHSQF--------EQAYQLVR----KIAGEVSRSEAWD--------VARELLRRLREQR-------HLAEQL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 675 HLLQQHNAEkdsLVRDHEREiENLEKQLRAANMEHENQIQEFKKRDaQVIADMEAQVHKLREELINVNSQR---KQQLVE 751
Cdd:PRK04863 516 QQLRMRLSE---LEQRLRQQ-QRAERLLAEFCKRLGKNLDDEDELE-QLQEELEARLESLSESVSEARERRmalRQQLEQ 590
|
410
....*....|....*..
gi 530411712 752 LGLLREEEKQRATREHE 768
Cdd:PRK04863 591 LQARIQRLAARAPAWLA 607
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
563-784 |
4.07e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.04 E-value: 4.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 563 KGKEDTQKKIHKFEEALKEKEEQLTRVTEVQrLQAQQADAALEEFKRqvELNSEKVYAEMKEQMEKVEADLTRSKSLREK 642
Cdd:PLN02939 163 TEKEALQGKINILEMRLSETDARIKLAAQEK-IHVEILEEQLEKLRN--ELLIRGATEGLCVHSLSKELDVLKEENMLLK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 643 QSKEFLWQLEDIRQRYEQQIVELKLEH--------EQEKTHLLQQHNAEK-DSLVRDHERE-IENLEKQLRAANMEHEN- 711
Cdd:PLN02939 240 DDIQFLKAELIEVAETEERVFKLEKERslldaslrELESKFIVAQEDVSKlSPLQYDCWWEkVENLQDLLDRATNQVEKa 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 712 -----QIQEFKKRDAQVIADM-EAQVHKLREELINVnSQRKQQLVELGLLREEEK--------QRATREHEIVVNKLKAE 777
Cdd:PLN02939 320 alvldQNQDLRDKVDKLEASLkEANVSKFSSYKVEL-LQQKLKLLEERLQASDHEihsyiqlyQESIKEFQDTLSKLKEE 398
|
....*..
gi 530411712 778 SEKMKIE 784
Cdd:PLN02939 399 SKKRSLE 405
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
502-863 |
4.45e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 40.61 E-value: 4.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 502 KASSMIEELEQNVCQLKQQLQESeLQRKQQLRDQENKFQMEKSHLKHIYEKkahdLQSELdkgkedtQKKIHKFEEALKE 581
Cdd:pfam06160 83 KAKKALDEIEELLDDIEEDIKQI-LEELDELLESEEKNREEVEELKDKYRE----LRKTL-------LANRFSYGPAIDE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 582 KEEQLtrvtevqrlqaqqaDAALEEFKRQVELNSE-------KVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDI 654
Cdd:pfam06160 151 LEKQL--------------AEIEEEFSQFEELTESgdylearEVLEKLEEETDALEELMEDIPPLYEELKTELPDQLEEL 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 655 RQRYEQQivelkleheQEKTHLLQQHNAEKDslVRDHEREIENLEKQLRAANMEH-ENQIQEFKKRDAQVIADMEA---- 729
Cdd:pfam06160 217 KEGYREM---------EEEGYALEHLNVDKE--IQQLEEQLEENLALLENLELDEaEEALEEIEERIDQLYDLLEKevda 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 730 --QVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEivvnklkaesekmkiELKKTHAAETEmtLEKANSKLKQI 807
Cdd:pfam06160 286 kkYVEKNLPEIEDYLEHAEEQNKELKEELERVQQSYTLNEN---------------ELERVRGLEKQ--LEELEKRYDEI 348
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 530411712 808 EKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAErRLQDVRQKFEDEKKQLIR 863
Cdd:pfam06160 349 VERLEEKEVAYSELQEELEEILEQLEEIEEEQEEFKE-SLQSLRKDELEAREKLDE 403
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
604-812 |
5.29e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 5.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 604 LEEFKRQVELNSEKVYAEMKEQMEKVEadltrskslrekqskeflwQLEDIRQRYEQQIVELK--------LEHEQEKTH 675
Cdd:PRK05771 84 LEELIKDVEEELEKIEKEIKELEEEIS-------------------ELENEIKELEQEIERLEpwgnfdldLSLLLGFKY 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 676 LlqqhnaekdsLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELiNVNSQRKQQLVELGLL 755
Cdd:PRK05771 145 V----------SVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEEL-KKLGFERLELEEEGTP 213
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 530411712 756 RE------EEKQRATREHEIVVNKLKAESEKMKIELKKTHaAETEMTLEKANSKLKQIEKEYT 812
Cdd:PRK05771 214 SElireikEELEEIEKERESLLEELKELAKKYLEELLALY-EYLEIELERAEALSKFLKTDKT 275
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
358-940 |
5.62e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 5.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 358 KKLHNAVAEMEQEKFDLQKQHT--ENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKL 435
Cdd:TIGR04523 43 KTIKNELKNKEKELKNLDKNLNkdEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 436 IQEKAELERcyqitcsELQEVKARRNTLHKEkdhlVNDYEQNMKLLQTKYDaDINLLKQEHALSASKASSMIEELEQNVC 515
Cdd:TIGR04523 123 EVELNKLEK-------QKKENKKNIDKFLTE----IKKKEKELEKLNNKYN-DLKKQKEELENELNLLEKEKLNIQKNID 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 516 QLKQQLQESEL---------QRKQQLRDQENKFQMEKSHLKHIYEKKAHDL----------QSELDKGKEDTQKKIHKFE 576
Cdd:TIGR04523 191 KIKNKLLKLELllsnlkkkiQKNKSLESQISELKKQNNQLKDNIEKKQQEInektteisntQTQLNQLKDEQNKIKKQLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 577 EALKEKEEQLTRVTEVQRlQAQQADAALEEFKRQVELNSEKvyaEMKEQMEKVEADLTRSKSlREKQSKEFLWQLEDIRQ 656
Cdd:TIGR04523 271 EKQKELEQNNKKIKELEK-QLNQLKSEISDLNNQKEQDWNK---ELKSELKNQEKKLEEIQN-QISQNNKIISQLNEQIS 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 657 RYEQQIVELKLEHeQEKTHLLQQHNAEKDSLVRDHE---REIENLEKQLRAANMEHENQIQEFKKRDAQvIADMEAQVHK 733
Cdd:TIGR04523 346 QLKKELTNSESEN-SEKQRELEEKQNEIEKLKKENQsykQEIKNLESQINDLESKIQNQEKLNQQKDEQ-IKKLQQEKEL 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 734 LREELINVNSQRKQQLVELGLLREEEKQRatrehEIVVNKLKAESEKMKIELKkthaaETEMTLEKANSKLKQIEKEYTQ 813
Cdd:TIGR04523 424 LEKEIERLKETIIKNNSEIKDLTNQDSVK-----ELIIKNLDNTRESLETQLK-----VLSRSINKIKQNLEQKQKELKS 493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 814 KLAKSSQIIAE---LQTTISSLKEENS---QQQLAAERRLQDVRQKFEDEKKQLIRDnDQAIKVLQDELENRSNQVRCAE 887
Cdd:TIGR04523 494 KEKELKKLNEEkkeLEEKVKDLTKKISslkEKIEKLESEKKEKESKISDLEDELNKD-DFELKKENLEKEIDEKNKEIEE 572
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 530411712 888 KKLQHKELE-SQEQITYIRQEYETKLKGLMpaSLRQELEDTISSLKSQVNFLQK 940
Cdd:TIGR04523 573 LKQTQKSLKkKQEEKQELIDQKEKEKKDLI--KEIEEKEKKISSLEKELEKAKK 624
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
517-906 |
5.88e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.26 E-value: 5.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 517 LKQQLQESELQRKQQLRDQE-NKFQMEKSHLKHIYEKKAHDLQ-SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQR 594
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEaANRQREKEKERYKRDREQWERQrRELESRVAELKEELRQSREKHEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 595 LQAQQADAALE--EFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREK---QSKEFLWQLEDIRQRYEQQIVELKleH 669
Cdd:pfam07888 112 ELSEEKDALLAqrAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKagaQRKEEEAERKQLQAKLQQTEEELR--S 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 670 EQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANM-EHENQIQEFKKRDAQVIADM-EAQVHKLREELINVNSQRKQ 747
Cdd:pfam07888 190 LSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRkEAENEALLEELRSLQERLNAsERKVEGLGEELSSMAAQRDR 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 748 QLVELGLLREEEKQratreheiVVNKLKAESEKMKiELKKTHAAETEMTLEKAnsklkQIEKEYTQKLAkssqiiAELQT 827
Cdd:pfam07888 270 TQAELHQARLQAAQ--------LTLQLADASLALR-EGRARWAQERETLQQSA-----EADKDRIEKLS------AELQR 329
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530411712 828 TISSLKEENSQqqlaaerrlqdvRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQ 906
Cdd:pfam07888 330 LEERLQEERME------------REKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQ 396
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
745-953 |
6.17e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.30 E-value: 6.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 745 RKQQLVELGLLREEEK----QRATREHEIV---VNKLKAESEKMKI---ELKKTHAAETEMTLEKANSKLKQIEKEYTQK 814
Cdd:PRK05771 26 HELGVVHIEDLKEELSnerlRKLRSLLTKLseaLDKLRSYLPKLNPlreEKKKVSVKSLEELIKDVEEELEKIEKEIKEL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 815 LAKssqiIAELQTTISSLKEENSQQQ--------LAAERRLQDVRQKF----EDEKKQLIRDNDQAIKVLQDELENRSNQ 882
Cdd:PRK05771 106 EEE----ISELENEIKELEQEIERLEpwgnfdldLSLLLGFKYVSVFVgtvpEDKLEELKLESDVENVEYISTDKGYVYV 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530411712 883 VRCAEKKLQHKELESQEQITYIRQEYETKLKglmPASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQ 953
Cdd:PRK05771 182 VVVVLKELSDEVEEELKKLGFERLELEEEGT---PSELIREIKEELEEIEKERESLLEELKELAKKYLEEL 249
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
782-941 |
6.47e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 6.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 782 KIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQI------------IAELQTTISSLKEE-----NSQQQLAA- 843
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALqrlaeyswdeidVASAEREIAELEAElerldASSDDLAAl 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 844 ERRLQDVRQKFEDEKKQLIRDNDQAIKvLQDELENRSNQVRCAEKKLQHKE-LESQEQITYIRQEYETKLKGLMPASLRQ 922
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGR-LEKELEQAEEELDELQDRLEAAEdLARLELRALLEERFAAALGDAVERELRE 769
|
170
....*....|....*....
gi 530411712 923 ELEDTISSLKSQVNFLQKR 941
Cdd:COG4913 770 NLEERIDALRARLNRAEEE 788
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
507-912 |
6.63e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 6.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 507 IEELEQNVCQLKQQLQE--SELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQ-SELDKGKEDTQKKIHKFEEALKEKE 583
Cdd:COG4717 73 LKELEEELKEAEEKEEEyaELQEELEELEEELEELEAELEELREELEKLEKLLQlLPLYQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 584 EQLTRVTEVQRlQAQQADAALEEFKRQVELNSEKVYAEMKEQMEkveadltrskslrekqskEFLWQLEDIRQRYEQQIV 663
Cdd:COG4717 153 ERLEELRELEE-ELEELEAELAELQEELEELLEQLSLATEEELQ------------------DLAEELEELQQRLAELEE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 664 ELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAA------------NMEHENQIQEFKKRDAQVIADMEAQV 731
Cdd:COG4717 214 ELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaallallglggsLLSLILTIAGVLFLVLGLLALLFLLL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 732 HKLREELINvNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEY 811
Cdd:COG4717 294 AREKASLGK-EAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 812 TQKLAKSS-----------QIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENrs 880
Cdd:COG4717 373 AALLAEAGvedeeelraalEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEE-- 450
|
410 420 430
....*....|....*....|....*....|..
gi 530411712 881 NQVRCAEKKLQHKELESQEQITYIRQEYETKL 912
Cdd:COG4717 451 LREELAELEAELEQLEEDGELAELLQELEELK 482
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
573-914 |
7.25e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 40.13 E-value: 7.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 573 HKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQmEKVEADLTRSKSLREKQSKEFLWQLE 652
Cdd:pfam09731 53 EDPPLAPKPKTFRPLQPSVVSAVTGESKEPKEEKKQVKIPRQSGVSSEVAEEE-KEATKDAAEAKAQLPKSEQEKEKALE 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 653 DIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKrdaqVIADMEAQVH 732
Cdd:pfam09731 132 EVLKEAISKAESATAVAKEAKDDAIQAVKAHTDSLKEASDTAEISREKATDSALQKAEALAEKLKE----VINLAKQSEE 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 733 KLREELINVNSQRKQQLVELGLLREEEKQRATREhEIVVNKLKAESEKMKIELKkthaAETEMTLEKANSKLKQIEKEYT 812
Cdd:pfam09731 208 EAAPPLLDAAPETPPKLPEHLDNVEEKVEKAQSL-AKLVDQYKELVASERIVFQ----QELVSIFPDIIPVLKEDNLLSN 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 813 QKLAKssqIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKvlqdelenrsnqvRCAEKKLQH 892
Cdd:pfam09731 283 DDLNS---LIAHAHREIDQLSKKLAELKKREEKHIERALEKQKEELDKLAEELSARLE-------------EVRAADEAQ 346
|
330 340
....*....|....*....|..
gi 530411712 893 KELESQEQITYIRQEYETKLKG 914
Cdd:pfam09731 347 LRLEFEREREEIRESYEEKLRT 368
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
316-891 |
7.54e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 40.11 E-value: 7.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 316 LEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESlnndwekklhnavAEMEQEKFDLQKQHTENIQELledtnvrlNK 395
Cdd:pfam05557 32 LEKKASALKRQLDRESDRNQELQKRIRLLEKREAEA-------------EEALREQAELNRLKKKYLEAL--------NK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 396 MESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKeKDHLVNDYE 475
Cdd:pfam05557 91 KLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEK-QQSSLAEAE 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 476 QNMKLLQTKydadinLLKQEHALSASKASSmieeleqnvcqlKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAH 555
Cdd:pfam05557 170 QRIKELEFE------IQSQEQDSEIVKNSK------------SELARIPELEKELERLREHNKHLNENIENKLLLKEEVE 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 556 DLQSELDKgKEDTQKKIHKFE---EALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQveLNSEKVYAEMKEQMEKVEAD 632
Cdd:pfam05557 232 DLKRKLER-EEKYREEAATLElekEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQL--QQREIVLKEENSSLTSSARQ 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 633 LTRSKSLREKQSKEFLWQLEDIRQRYEQQivELKLEHEQEKTHLLQQHNAEKDSLVR--DHEREIENLEKQLRAANMEHE 710
Cdd:pfam05557 309 LEKARRELEQELAQYLKKIEDLNKKLKRH--KALVRRLQRRVLLLTKERDGYRAILEsyDKELTMSNYSPQLLERIEEAE 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 711 NQIQEFKKRDAQviadMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHA 790
Cdd:pfam05557 387 DMTQKMQAHNEE----MEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYSKEEVDSLRRKLETLELERQRLRE 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 791 AETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSlkeeNSQQQLAAE-RRLQDVRQKFEDEKKQLIRDNDQAI 869
Cdd:pfam05557 463 QKNELEMELERRCLQGDYDPKKTKVLHLSMNPAAEAYQQRK----NQLEKLQAEiERLKRLLKKLEDDLEQVLRLPETTS 538
|
570 580
....*....|....*....|..
gi 530411712 870 KVLQDELENRSNQVRCAEKKLQ 891
Cdd:pfam05557 539 TMNFKEVLDLRKELESAELKNQ 560
|
|
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
538-955 |
7.71e-03 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 40.27 E-value: 7.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 538 KFQMEKSHLKHIYEKKAHDLQSELDKGKED---TQKKIHKFEEALKEKEEQLTRVTEVQR----LQAQQADAALEEFKRQ 610
Cdd:pfam15964 217 KWRLELEKLKLLYEAKTEVLESQVKSLRKDlaeSQKTCEDLKERLKHKESLVAASTSSRVgglcLKCAQHEAVLAQTHTN 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 611 VELNSekVYAEMKEQMEKVEADLTRSKSLREKQSKEFlwqledirQRYEQ--QIVELKLEHEQEKTHLLQQHNAEKDSLV 688
Cdd:pfam15964 297 VHMQT--IERLTKERDDLMSALVSVRSSLAEAQQRES--------SAYEQvkQAVQMTEEANFEKTKALIQCEQLKSELE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 689 RDHEREIENLEKQLRAANMEHENQIQEFKKRD----------AQVIADMEAQVHKLREELINVNSQRKQQLVELGlLREE 758
Cdd:pfam15964 367 RQKERLEKELASQQEKRAQEKEALRKEMKKEReelgatmlalSQNVAQLEAQVEKVTREKNSLVSQLEEAQKQLA-SQEM 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 759 EKQRATREHEIVVNKLKAESEKMKIELKKtHAAETEMTLEKANSKLKQIE---KEYTQKLAKSSQIIAELQTTISSLKEE 835
Cdd:pfam15964 446 DVTKVCGEMRYQLNQTKMKKDEAEKEHRE-YRTKTGRQLEIKDQEIEKLGlelSESKQRLEQAQQDAARAREECLKLTEL 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 836 NSQqqlaAERRLQDVRQkfEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQE-YETKLKG 914
Cdd:pfam15964 525 LGE----SEHQLHLTRL--EKESIQQSFSNEAKAQALQAQQREQELTQKMQQMEAQHDKTVNEQYSLLTSQNtFIAKLKE 598
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 530411712 915 LMpASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGR 955
Cdd:pfam15964 599 EC-CTLAKKLEEITQKSRSEVEQLSQEKEYLQDRLEKLQKR 638
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
254-444 |
7.81e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 7.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 254 REKELDMKTKMMEAKfhEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHE---TEETIRKLEKKVQTLIRDCQVI 330
Cdd:COG4942 25 AEAELEQLQQEIAEL--EKELAALKKEEKALLKQLAALERRIAALARRIRALEQElaaLEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 331 RETKEDQIAELKKICEQSTESL---NNDWEK-----KLHNAVAEMEQEKFDLQKQHTENIQEL---LEDTNVRLNKMESE 399
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALllsPEDFLDavrrlQYLKYLAPARREQAEELRADLAELAALraeLEAERAELEALLAE 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 530411712 400 YMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELER 444
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
684-936 |
8.58e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 40.03 E-value: 8.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 684 KDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRA 763
Cdd:PTZ00108 997 KEYLLGKLERELARLSNKVRFIKHVINGELVITNAKKKDLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDE 1076
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 764 TREHEIV--------------------VNKLKAESEKMKIELKKTHAAETE-MTLEKANSKLKQIEKEYTQKLAKSSQII 822
Cdd:PTZ00108 1077 DDEEELGaavsydyllsmpiwsltkekVEKLNAELEKKEKELEKLKNTTPKdMWLEDLDKFEEALEEQEEVEEKEIAKEQ 1156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411712 823 AELQTTISSLKEENSQQQLAAERRlqdvrqkfedeKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQIT 902
Cdd:PTZ00108 1157 RLKSKTKGKASKLRKPKLKKKEKK-----------KKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQ 1225
|
250 260 270
....*....|....*....|....*....|....
gi 530411712 903 YIRQEYETKLKGlmPASLRQELEDTISSLKSQVN 936
Cdd:PTZ00108 1226 EDDEEQKTKPKK--SSVKRLKSKKNNSSKSSEDN 1257
|
|
| |
