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Conserved domains on  [gi|530371187|ref|XP_005247022|]
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general transcription factor 3C polypeptide 3 isoform X1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 16-122 3.20e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.15  E-value: 3.20e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371187  16 LLTTLVEQNPEDmGDLYLDVAEAFLDVGEYNSALPLLSALVcSERYNLAVVWLRHAECLKALGYMERAAESYGKVVDLAP 95
Cdd:COG3914  100 LYRRALALNPDN-AEALFNLGNLLLALGRLEEALAALRRAL-ALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP 177

                         90       100
                 ....*....|....*....|....*..
gi 530371187  96 LHLDARISLSTLQQQLGQPEKALEALE 122
Cdd:COG3914  178 DNAEALNNLGNALQDLGRLEEAIAAYR 204
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 337-450 1.93e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 40.75  E-value: 1.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371187 337 NPENHALCVLNGHNAFVSGSFKHALGQYVQAFRTHPDEPLYSFCIGLTFIHmasqkyvLRRHAlivQGFSFLNRYLSLRG 416
Cdd:COG3914  108 NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR-------LGRLE---EAIAALRRALELDP 177

                         90       100       110
                 ....*....|....*....|....*....|....
gi 530371187 417 PCQESFYNLGRGLHQLGLIHLAIHYYQKALELPP 450
Cdd:COG3914  178 DNAEALNNLGNALQDLGRLEEAIAAYRRALELDP 211
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 16-122 3.20e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.15  E-value: 3.20e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371187  16 LLTTLVEQNPEDmGDLYLDVAEAFLDVGEYNSALPLLSALVcSERYNLAVVWLRHAECLKALGYMERAAESYGKVVDLAP 95
Cdd:COG3914  100 LYRRALALNPDN-AEALFNLGNLLLALGRLEEALAALRRAL-ALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP 177

                         90       100
                 ....*....|....*....|....*..
gi 530371187  96 LHLDARISLSTLQQQLGQPEKALEALE 122
Cdd:COG3914  178 DNAEALNNLGNALQDLGRLEEAIAAYR 204
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 337-450 1.93e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 40.75  E-value: 1.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371187 337 NPENHALCVLNGHNAFVSGSFKHALGQYVQAFRTHPDEPLYSFCIGLTFIHmasqkyvLRRHAlivQGFSFLNRYLSLRG 416
Cdd:COG3914  108 NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR-------LGRLE---EAIAALRRALELDP 177

                         90       100       110
                 ....*....|....*....|....*....|....
gi 530371187 417 PCQESFYNLGRGLHQLGLIHLAIHYYQKALELPP 450
Cdd:COG3914  178 DNAEALNNLGNALQDLGRLEEAIAAYRRALELDP 211
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 420-450 3.48e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.11  E-value: 3.48e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 530371187   420 ESFYNLGRGLHQLGLIHLAIHYYQKALELPP 450
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 16-122 3.20e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.15  E-value: 3.20e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371187  16 LLTTLVEQNPEDmGDLYLDVAEAFLDVGEYNSALPLLSALVcSERYNLAVVWLRHAECLKALGYMERAAESYGKVVDLAP 95
Cdd:COG3914  100 LYRRALALNPDN-AEALFNLGNLLLALGRLEEALAALRRAL-ALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP 177

                         90       100
                 ....*....|....*....|....*..
gi 530371187  96 LHLDARISLSTLQQQLGQPEKALEALE 122
Cdd:COG3914  178 DNAEALNNLGNALQDLGRLEEAIAAYR 204
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 16-122 6.03e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.73  E-value: 6.03e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371187  16 LLTTLVEQNPEDMgDLYLDVAEAFLDVGEYNSALPLLSALVCSERYNLAVvWLRHAECLKALGYMERAAESYGKVVDLAP 95
Cdd:COG4783   26 LLEKALELDPDNP-EAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEA-RLNLGLALLKAGDYDEALALLEKALKLDP 103

                         90       100
                 ....*....|....*....|....*..
gi 530371187  96 LHLDARISLSTLQQQLGQPEKALEALE 122
Cdd:COG4783  104 EHPEAYLRLARAYRALGRPDEAIAALE 130
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 17-142 8.79e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 50.77  E-value: 8.79e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371187  17 LTTLVEQNPEDmGDLYLDVAEAFLDVGEYNSALPLLSALVCSERYNlAVVWLRHAECLKALGYMERAAESYGKVVDLAPL 96
Cdd:COG4235    6 LRQALAANPND-AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN-ADALLDLAEALLAAGDTEEAEELLERALALDPD 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 530371187  97 HLDARISLSTLQQQLGQPEKALEALEPMYDPDTLAQDANAAQQELK 142
Cdd:COG4235   84 NPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIA 129
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 16-122 3.94e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.65  E-value: 3.94e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371187  16 LLTTLVEQNPEDMgDLYLDVAEAFLDVGEYNSALPLLSALVCSERYNLAVvWLRHAECLKALGYMERAAESYGKVVDLAP 95
Cdd:COG2956   30 LLEEALELDPETV-EAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEA-LLELAQDYLKAGLLDRAEELLEKLLELDP 107

                         90       100
                 ....*....|....*....|....*..
gi 530371187  96 LHLDARISLSTLQQQLGQPEKALEALE 122
Cdd:COG2956  108 DDAEALRLLAEIYEQEGDWEKAIEVLE 134
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 20-156 7.33e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 51.92  E-value: 7.33e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371187  20 LVEQNPEDMGDLYLDVAEAFLDVGEYNSALPLLSALVcsERY-NLAVVWLRHAECLKALGYMERAAESYGKVVDLAPLHL 98
Cdd:COG3914   69 AAAAALLLLAALLELAALLLQALGRYEEALALYRRAL--ALNpDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFA 146

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 530371187  99 DARISLSTLQQQLGQPEKALEALEPMydpdtLAQDANAAQqelkLLLHRSTLLFSQGK 156
Cdd:COG3914  147 EAYLNLGEALRRLGRLEEAIAALRRA-----LELDPDNAE----ALNNLGNALQDLGR 195
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 16-131 2.16e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.34  E-value: 2.16e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371187  16 LLTTLVEQNPEDMgDLYLDVAEAFLDVGEYNSALPLLSALVCSERYNlAVVWLRHAECLKALGYMERAAESYGKVVDLAP 95
Cdd:COG2956   98 LLEKLLELDPDDA-EALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN-AHAYCELAELYLEQGDYDEAIEALEKALKLDP 175

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 530371187  96 LHLDARISLSTLQQQLGQPEKALEALEPMY--DPDTLA 131
Cdd:COG2956  176 DCARALLLLAELYLEQGDYEEAIAALERALeqDPDYLP 213
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
21-147 4.07e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 48.08  E-value: 4.07e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371187  21 VEQNPEDmGDLYLDVAEAFLDVGEYNSALPLLSALVcSERYNLAVVWLRHAECLKALGYMERAAESYGKVVDLAPLHLDA 100
Cdd:COG0457   69 LELDPDD-AEALNNLGLALQALGRYEEALEDYDKAL-ELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADA 146

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 530371187 101 RISLSTLQQQLGQPEKALEALEPMYDPDTLAQDANAAQQELKLLLHR 147
Cdd:COG0457  147 LYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAA 193
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
21-122 4.35e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.00  E-value: 4.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371187  21 VEQNPEDmGDLYLDVAEAFLDVGEYNSALPLLSALVcSERYNLAVVWLRHAECLKALGYMERAAESYGKVVDLAPLHLDA 100
Cdd:COG0457   35 LELDPDD-AEALYNLGLAYLRLGRYEEALADYEQAL-ELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEA 112

                         90       100
                 ....*....|....*....|..
gi 530371187 101 RISLSTLQQQLGQPEKALEALE 122
Cdd:COG0457  113 LYNLGLALLELGRYDEAIEAYE 134
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 16-122 4.55e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.11  E-value: 4.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371187  16 LLTTLVEQNPEDMgDLYLDVAEAFLDVGEYNSALPLLSALVcSERYNLAVVWLRHAECLKALGYMERAAESYGKVVDLAP 95
Cdd:COG2956  132 VLERLLKLGPENA-HAYCELAELYLEQGDYDEAIEALEKAL-KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDP 209

                         90       100
                 ....*....|....*....|....*..
gi 530371187  96 LHLDARISLSTLQQQLGQPEKALEALE 122
Cdd:COG2956  210 DYLPALPRLAELYEKLGDPEEALELLR 236
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 38-144 7.18e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.29  E-value: 7.18e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371187  38 AFLDVGEYNSALPLLSALVcsERY----NLAVVWLRHAECLKALGYMERAAESYGKVVDLAP---LHLDARISLSTLQQQ 110
Cdd:COG1729    2 ALLKAGDYDEAIAAFKAFL--KRYpnspLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLSYLE 79

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 530371187 111 LGQPEKALEALEPMYD--PDTLAqdANAAQQELKLL 144
Cdd:COG1729   80 LGDYDKARATLEELIKkyPDSEA--AKEARARLARL 113
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 337-450 1.93e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 40.75  E-value: 1.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371187 337 NPENHALCVLNGHNAFVSGSFKHALGQYVQAFRTHPDEPLYSFCIGLTFIHmasqkyvLRRHAlivQGFSFLNRYLSLRG 416
Cdd:COG3914  108 NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR-------LGRLE---EAIAALRRALELDP 177

                         90       100       110
                 ....*....|....*....|....*....|....
gi 530371187 417 PCQESFYNLGRGLHQLGLIHLAIHYYQKALELPP 450
Cdd:COG3914  178 DNAEALNNLGNALQDLGRLEEAIAAYRRALELDP 211
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
62-122 2.11e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.99  E-value: 2.11e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530371187  62 NLAVVWLRHAECLKALGYMERAAESYGKVVDLAPLHLDARISLSTLQQQLGQPEKALEALE 122
Cdd:COG0457    6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYE 66
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 420-450 3.48e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.11  E-value: 3.48e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 530371187   420 ESFYNLGRGLHQLGLIHLAIHYYQKALELPP 450
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 328-450 3.86e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.86  E-value: 3.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371187 328 RFCLRLMLKNPENHALCVLNGHNAFVSGSFKHALGQYVQAFRTHPDEPLYSFCIGLtfIHMASQKYVlrrhalivQGFSF 407
Cdd:COG4783   25 ALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL--ALLKAGDYD--------EALAL 94

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 530371187 408 LNRYLSLRGPCQESFYNLGRGLHQLGLIHLAIHYYQKALELPP 450
Cdd:COG4783   95 LEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 64-122 7.60e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 36.71  E-value: 7.60e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 530371187  64 AVVWLRHAECLKALGYMERAAESYGKVVDLAPLHLDARISLSTLQQQLGQPEKALEALE 122
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLH 62
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 31-131 7.93e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 37.25  E-value: 7.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371187  31 LYLDVAEAFLDVGEYNSALPLLSALVcSERYNLAVVWLRHAECLKALGYMERAAESYGKVVDLAPLHLDARISLSTLQQQ 110
Cdd:COG5010   56 IESPSDNLYNKLGDFEESLALLEQAL-QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLS 134

                         90       100
                 ....*....|....*....|.
gi 530371187 111 LGQPEKALEALEPMYDPDTLA 131
Cdd:COG5010  135 LGQDDEAKAALQRALGTSPLK 155
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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