NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|356552332|ref|XP_003544522|]
View 

NADH-quinone oxidoreductase subunit B 1 [Glycine max]

Protein Classification

NuoB/complex I 20 kDa subunit family protein( domain architecture ID 10012723)

NuoB/complex I 20 kDa subunit family protein such as bacterial NADH-quinone oxidoreductase subunit B (NuoB) and mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, which are both part of the connecting domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

CATH:  3.40.50.12280
EC:  1.6.5.9
Gene Ontology:  GO:0051539|GO:0008137|GO:0045271|GO:0048038|GO:0016655|GO:0005886
PubMed:  30277212|1470679|33957129|23417064|24059520
SCOP:  4007641

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
56-207 2.25e-112

NADH-quinone oxidoreductase subunit NuoB;


:

Pssm-ID: 235797  Cd Length: 183  Bit Score: 318.46  E-value: 2.25e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332  56 FVISKVDSLLNWARTGSIWPMTFGLACCAVEMMHTGGARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQM 135
Cdd:PRK06411  20 VVLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRLYDQM 99

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 356552332 136 PEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLWWWTR 207
Cdd:PRK06411 100 PEPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQSERERKRGER 171
 
Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
56-207 2.25e-112

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 318.46  E-value: 2.25e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332  56 FVISKVDSLLNWARTGSIWPMTFGLACCAVEMMHTGGARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQM 135
Cdd:PRK06411  20 VVLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRLYDQM 99

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 356552332 136 PEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLWWWTR 207
Cdd:PRK06411 100 PEPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQSERERKRGER 171
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 58-205 2.38e-106

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 302.10  E-value: 2.38e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332  58 ISKVDSLLNWARTGSIWPMTFGLACCAVEMMHTGGARYDLDRFGI-IFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMP 136
Cdd:COG0377    1 LTTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAeVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMP 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 356552332 137 EPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLWWW 205
Cdd:COG0377   81 EPKWVIAMGACAISGGPYWDSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRGRKE 149
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 56-198 8.17e-105

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 298.11  E-value: 8.17e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332   56 FVISKVDSLLNWARTGSIWPMTFGLACCAVEMMHTGGARYDLDRFG-IIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQ 134
Cdd:TIGR01957   2 VLLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGsEVFRASPRQADVMIVAGTVTKKMAPALRRLYDQ 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 356552332  135 MPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRR 198
Cdd:TIGR01957  82 MPEPKWVISMGACANSGGMFHTSYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKRE 145
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
83-191 6.30e-36

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 122.31  E-value: 6.30e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332   83 CAVEMMHTGGARYDL-----DRFGIIFRPSPR----QSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGY 153
Cdd:pfam01058   4 CTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFGGI 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 356552332  154 YH----YSYAvVRGCDRIVPVDIYVPGCPPTAEALLYGLLQL 191
Cdd:pfam01058  84 PAagnnPSYG-VRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
 
Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
56-207 2.25e-112

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 318.46  E-value: 2.25e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332  56 FVISKVDSLLNWARTGSIWPMTFGLACCAVEMMHTGGARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQM 135
Cdd:PRK06411  20 VVLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRLYDQM 99

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 356552332 136 PEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLWWWTR 207
Cdd:PRK06411 100 PEPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQSERERKRGER 171
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 58-205 2.38e-106

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 302.10  E-value: 2.38e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332  58 ISKVDSLLNWARTGSIWPMTFGLACCAVEMMHTGGARYDLDRFGI-IFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMP 136
Cdd:COG0377    1 LTTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAeVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMP 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 356552332 137 EPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLWWW 205
Cdd:COG0377   81 EPKWVIAMGACAISGGPYWDSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRGRKE 149
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 56-198 8.17e-105

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 298.11  E-value: 8.17e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332   56 FVISKVDSLLNWARTGSIWPMTFGLACCAVEMMHTGGARYDLDRFG-IIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQ 134
Cdd:TIGR01957   2 VLLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGsEVFRASPRQADVMIVAGTVTKKMAPALRRLYDQ 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 356552332  135 MPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRR 198
Cdd:TIGR01957  82 MPEPKWVISMGACANSGGMFHTSYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKRE 145
PRK14818 PRK14818
NADH dehydrogenase subunit B; Provisional
 42-195 8.62e-71

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173279  Cd Length: 173  Bit Score: 212.89  E-value: 8.62e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332  42 TANSSPVGLSKPAEFVISKVDSLLNWARTGSIWPMTFGLACCAVEMMHTGGARYDLDRFGIIFRPSPRQSDCMIVAGTLT 121
Cdd:PRK14818   2 AARMDPGIGGDVTLLHTSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIVAGTLT 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 356552332 122 NKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKI 195
Cdd:PRK14818  82 YKMAERARLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVPGCPPRPEALTEGLLRLQEIV 155
PRK14819 PRK14819
NADH-quinone oxidoreductase subunit B;
58-199 4.09e-70

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 237822  Cd Length: 264  Bit Score: 214.46  E-value: 4.09e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332  58 ISKVDSLLNWARTGSIWPMTFGLACCAVEMMHTGGARYDLDRFGI-IFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMP 136
Cdd:PRK14819  18 LTTVNRFYNWGRRSSVWPMAFGLACCAIEMMATGLSRYDLARFGAeLFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMP 97

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 356552332 137 EPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRK 199
Cdd:PRK14819  98 EPRYVISMGACATSGGPFRDGYNVLRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQS 160
PRK14813 PRK14813
NADH dehydrogenase subunit B; Provisional
 57-195 1.71e-69

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173274  Cd Length: 189  Bit Score: 210.12  E-value: 1.71e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332  57 VISKVDSLLNWARTGSIWPMTFGLACCAVEMMHTGGARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMP 136
Cdd:PRK14813  14 LVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQSDLMIVAGTVTMKMAERVVRLYEQMP 93

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332 137 EPRWVISMGSCANGGG-YYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKI 195
Cdd:PRK14813  94 EPRYVLSMGSCSNCGGpYWEHGYHVLKGVDRIIPVDVYVPGCPPRPEALIGGLMKVQELI 153
PRK14815 PRK14815
NADH dehydrogenase subunit B; Provisional
 55-201 1.80e-69

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 237821  Cd Length: 183  Bit Score: 209.76  E-value: 1.80e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332  55 EFVISKVDSLLNWARTGSIWPMTFGLACCAVEMMHTGGARYDLDRFGI-IFRPSPRQSDCMIVAGTLTNKMAPALRKVYD 133
Cdd:PRK14815  17 NVVVTTLDAAINWIRKNSLWPMPMGLACCAIELMAVACSRFDISRFGAeVMRFSPRQADVMIVAGTVTYKMALAVRRIYD 96

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 356552332 134 QMPEPRWVISMGSCANGGGYYHySYAVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDF 201
Cdd:PRK14815  97 QMPEPKWVIAMGACASSGGMYR-SYSVLQGVDRILPVDVYISGCPPRPEAILDALIKLQKKIDTERAA 163
PRK14816 PRK14816
NADH-quinone oxidoreductase subunit B;
54-201 2.67e-65

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173277  Cd Length: 182  Bit Score: 199.37  E-value: 2.67e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332  54 AEFVISKVDSLLNWARTGSIWPMTFGLACCAVEMMHTGGARYDLDRFGI-IFRPSPRQSDCMIVAGTLTNKMAPALRKVY 132
Cdd:PRK14816  24 ANVFVGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFeVARASPRQADMIMVCGTITNKMAPVLKRLY 103

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 356552332 133 DQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDF 201
Cdd:PRK14816 104 DQMADPKYVIAVGGCAVSGGPFKKSYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEKFF 172
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
51-197 2.22e-63

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 209.63  E-value: 2.22e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332  51 SKPAEFVISKVDSLLNWARTGSIWPMTFGLACCAVEMMHTGGARYDLDRFGI-IFRPSPRQSDCMIVAGTLTNKMAPALR 129
Cdd:PRK13292   2 TIPENILLASLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAeVLRGTPREADLMVIAGTVFKKMAPSIL 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 356552332 130 KVYDQMPEPRWVISMGSCANGGGYYHYsYAVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINR 197
Cdd:PRK13292  82 RLYEQMAEPKWVISMGSCANSGGMYDV-YSVVQGVNQILPVDVYIPGCPPRPEAFLQGLMLLQEKIRR 148
ndhK CHL00023
NADH dehydrogenase subunit K
 64-197 9.05e-58

NADH dehydrogenase subunit K


Pssm-ID: 214337  Cd Length: 225  Bit Score: 181.44  E-value: 9.05e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332  64 LLNWARTGSIWPMTFGLACCAVEMMHTGGARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVIS 143
Cdd:CHL00023  25 LSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIA 104

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 356552332 144 MGSCANGGGYYHY-SYAVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINR 197
Cdd:CHL00023 105 MGACTITGGMFSTdSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISR 159
PRK14814 PRK14814
NADH dehydrogenase subunit B; Provisional
 50-195 3.93e-57

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173275  Cd Length: 186  Bit Score: 178.68  E-value: 3.93e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332  50 LSKPAE-----FVISKVDSLLNWARTGSIWPMTFGLACCAVEMMHTGGARYDLDRFGIIfRPS--PRQSDCMIVAGTLTN 122
Cdd:PRK14814   7 SKKPGQalgdmFQLGNLESVIQWGRSFSLWPYPFATACCGIEYMSTACSDYDIARFGAE-RPSfsPRQADMILVLGTITY 85

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 356552332 123 KMAPALRKVYDQMPEPRWVISMGSCANGGGYYHySYAVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKI 195
Cdd:PRK14814  86 KMAPVLRQIYDQMAEPKFVISVGACASSGGMFH-TYGVLQGVDRILPVDVYVPGCPPRPEAILDALVKLQTKL 157
PRK14820 PRK14820
NADH-quinone oxidoreductase subunit B;
45-198 8.08e-56

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 184833  Cd Length: 180  Bit Score: 175.02  E-value: 8.08e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332  45 SSPVGLSKPAeFVISKVDSLLNWARTGSIWPMTFGLACCAVEMMHTGGARYDLDRFGIIfRPS--PRQSDCMIVAGTLTN 122
Cdd:PRK14820   8 EAPEGYEGEG-FFATSLDSVIGLARKNSLWPLPFATSCCGIEFMATMASHYDLARFGSE-RPSfsPRQADMLMVMGTIAK 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332 123 KMAPALRKVYDQMPEPRWVISMGSCANGGGYYHySYAVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQ-----KKINR 197
Cdd:PRK14820  86 KMAPVLKQVYLQMAEPRWVVAVGACASSGGIFD-TYSVLQGIDRIIPVDVYVPGCPPRPEQIIDGVMRVQelvknESLRR 164


                 .
gi 356552332 198 R 198
Cdd:PRK14820 165 R 165
PRK14817 PRK14817
NADH-quinone oxidoreductase subunit B;
56-195 1.29e-53

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173278  Cd Length: 181  Bit Score: 169.75  E-value: 1.29e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332  56 FVISKVDSLLNWARTGSIWPMTFGLACCAVEMMHTGGARYDLDRFGIIF-RPSPRQSDCMIVAGTLTNKMAPALRKVYDQ 134
Cdd:PRK14817  20 FLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMpRFSPRQADLLMVVGTVNCKQAPILQRVYEQ 99

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 356552332 135 MPEPRWVISMGSCANGGGYYHySYAVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKI 195
Cdd:PRK14817 100 MADPKWVMAFGVCASSGGFYD-NYATVQGIDRIIPVDVYVPGCPPRPEQVLDGIMLLQKKI 159
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
83-199 1.68e-53

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


Pssm-ID: 442491  Cd Length: 137  Bit Score: 167.66  E-value: 1.68e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332  83 CAVEMMHTGGARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVR 162
Cdd:COG3260   20 CEIEILALLTPRYDLERFGIKFVASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKVVVAVGDCACSGGVFRDSYAVLG 99

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 356552332 163 GCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRK 199
Cdd:COG3260  100 GVDKVIPVDVYIPGCPPRPEAILDGLLKALGRLEEKL 136
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
83-191 6.30e-36

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 122.31  E-value: 6.30e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332   83 CAVEMMHTGGARYDL-----DRFGIIFRPSPR----QSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGY 153
Cdd:pfam01058   4 CTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFGGI 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 356552332  154 YH----YSYAvVRGCDRIVPVDIYVPGCPPTAEALLYGLLQL 191
Cdd:pfam01058  84 PAagnnPSYG-VRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
FrhG COG1941
Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];
141-191 1.60e-05

Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];


Pssm-ID: 441544 [Multi-domain]  Cd Length: 262  Bit Score: 44.15  E-value: 1.60e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356552332 141 VISMGSCANGGG----------------YYHYSYAV---------------VRGCDRIVPVDIYVPGCPPTAEALLYGLL 189
Cdd:COG1941   81 LVALGACAVTGGipalrnlydleellerVYGETPSTnpqipgeelpelldrVRPLSEVVKVDYELPGCPPDPDQILEVLT 160


                 ..
gi 356552332 190 QL 191
Cdd:COG1941  161 AL 162
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH