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Conserved domains on  [gi|255071347|ref|XP_002507755|]
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predicted protein [Micromonas commoda]

Protein Classification

DUF2039 domain-containing protein( domain architecture ID 10562929)

DUF2039 domain-containing protein similar to Homo sapiens protein C9orf85

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2039 pfam10217
Uncharacterized conserved protein (DUF2039); This entry is a region of approximately 100 ...
 22-117 5.88e-32

Uncharacterized conserved protein (DUF2039); This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.


:

Pssm-ID: 463003  Cd Length: 89  Bit Score: 109.68  E-value: 5.88e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255071347   22 KHVNRGgAFKAHRNVKrAVRDVDAENAlrsrACAGVCRRCVQKVQWRFQFGKYKARapSNKGNCGECKLKTVAFAYRSLC 101
Cdd:pfam10217   2 KHQNRV-AFKNNRHDK-SKKTKKINAL----PISGVCQRCKDIIEWKKKYGKYKPL--TQPGKCNKCQQKTVKKAYHVIC 73

                          90
                  ....*....|....*.
gi 255071347  102 DKCAKERRLCPGCVKP 117
Cdd:pfam10217  74 DPCAKELKVCAKCGKP 89
 
Name Accession Description Interval E-value
DUF2039 pfam10217
Uncharacterized conserved protein (DUF2039); This entry is a region of approximately 100 ...
 22-117 5.88e-32

Uncharacterized conserved protein (DUF2039); This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.


Pssm-ID: 463003  Cd Length: 89  Bit Score: 109.68  E-value: 5.88e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255071347   22 KHVNRGgAFKAHRNVKrAVRDVDAENAlrsrACAGVCRRCVQKVQWRFQFGKYKARapSNKGNCGECKLKTVAFAYRSLC 101
Cdd:pfam10217   2 KHQNRV-AFKNNRHDK-SKKTKKINAL----PISGVCQRCKDIIEWKKKYGKYKPL--TQPGKCNKCQQKTVKKAYHVIC 73

                          90
                  ....*....|....*.
gi 255071347  102 DKCAKERRLCPGCVKP 117
Cdd:pfam10217  74 DPCAKELKVCAKCGKP 89
 
Name Accession Description Interval E-value
DUF2039 pfam10217
Uncharacterized conserved protein (DUF2039); This entry is a region of approximately 100 ...
 22-117 5.88e-32

Uncharacterized conserved protein (DUF2039); This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.


Pssm-ID: 463003  Cd Length: 89  Bit Score: 109.68  E-value: 5.88e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255071347   22 KHVNRGgAFKAHRNVKrAVRDVDAENAlrsrACAGVCRRCVQKVQWRFQFGKYKARapSNKGNCGECKLKTVAFAYRSLC 101
Cdd:pfam10217   2 KHQNRV-AFKNNRHDK-SKKTKKINAL----PISGVCQRCKDIIEWKKKYGKYKPL--TQPGKCNKCQQKTVKKAYHVIC 73

                          90
                  ....*....|....*.
gi 255071347  102 DKCAKERRLCPGCVKP 117
Cdd:pfam10217  74 DPCAKELKVCAKCGKP 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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