NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|224006524|ref|XP_002292222|]
View 

predicted protein [Thalassiosira pseudonana CCMP1335]

Protein Classification

PAM68 family protein( domain architecture ID 10571573)

PAM68 family protein is a DUF3464 domain-containing protein; similar to Arabidopsis thaliana chloroplastic protein PAM68 (PHOTOSYNTHESIS AFFECTED MUTANT 68), which is involved in early steps in photosystem II (PSII) biogenesis and in maturation and stability of newly synthesized psbA protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF3464 pfam11947
Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the ...
 87-222 5.79e-47

Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the Sll0933 homolog from Cyanobacteria (blue-green algae). PAM68 is involved in early steps in photosystem II (PSII) biogenesis and in maturation and stability of newly synthesized psbA protein.


:

Pssm-ID: 432211  Cd Length: 150  Bit Score: 153.61  E-value: 5.79e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224006524   87 KQLRTREAEQRDAELQKLRDlRATDSLLKEDPNAA---AIPEKVAQRMGKRMLPFVGVPLFGTFATFIGFWYAAVYKDME 163
Cdd:pfam11947  13 KRKKPPKAAKKSAKVKKETK-RAADSAGKKDKNEAeemAIPEVVSQRMIRRMAFFSGIPTALGVATFVVFYLLVSGAWFD 91

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 224006524  164 FQPAIVASTSFVFLAIGLLGITYSVMSSSWDEDREGSGLGFDEFSKNVDSLKEGLSRTK 222
Cdd:pfam11947  92 LPPWAVLLVSMGFFGLGVLGLSYGVLSASWDEEREGSLLGWEEFKTNWGRMIEAWRSAR 150
 
Name Accession Description Interval E-value
DUF3464 pfam11947
Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the ...
 87-222 5.79e-47

Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the Sll0933 homolog from Cyanobacteria (blue-green algae). PAM68 is involved in early steps in photosystem II (PSII) biogenesis and in maturation and stability of newly synthesized psbA protein.


Pssm-ID: 432211  Cd Length: 150  Bit Score: 153.61  E-value: 5.79e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224006524   87 KQLRTREAEQRDAELQKLRDlRATDSLLKEDPNAA---AIPEKVAQRMGKRMLPFVGVPLFGTFATFIGFWYAAVYKDME 163
Cdd:pfam11947  13 KRKKPPKAAKKSAKVKKETK-RAADSAGKKDKNEAeemAIPEVVSQRMIRRMAFFSGIPTALGVATFVVFYLLVSGAWFD 91

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 224006524  164 FQPAIVASTSFVFLAIGLLGITYSVMSSSWDEDREGSGLGFDEFSKNVDSLKEGLSRTK 222
Cdd:pfam11947  92 LPPWAVLLVSMGFFGLGVLGLSYGVLSASWDEEREGSLLGWEEFKTNWGRMIEAWRSAR 150
Pam68 COG5778
Photosystem II assembly factor PAM68, DUF3464 (PF11947) domain [Energy production and ...
 110-217 1.74e-26

Photosystem II assembly factor PAM68, DUF3464 (PF11947) domain [Energy production and conversion];


Pssm-ID: 444488  Cd Length: 158  Bit Score: 100.80  E-value: 1.74e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224006524 110 TDSLLKEDPNAAAIPEKVAQRMGKRMLPFVGVPLFGTFATFIGFWYAAVYKDMEFQPAIVASTSFVFLAIGLLGITYSVM 189
Cdd:COG5778   40 AAKKPKREKESMAIPEVVSQRMVRRMALFSGIPTALGILTFVVSYLIVSNDWFELPNTAVLLVSMGFFGLGVLGLSYGVL 119

                         90       100
                 ....*....|....*....|....*...
gi 224006524 190 SSSWDEDREGSGLGFDEFSKNVDSLKEG 217
Cdd:COG5778  120 SASWDEERSGSLLGWQEFKTNFGRMTAA 147
 
Name Accession Description Interval E-value
DUF3464 pfam11947
Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the ...
 87-222 5.79e-47

Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the Sll0933 homolog from Cyanobacteria (blue-green algae). PAM68 is involved in early steps in photosystem II (PSII) biogenesis and in maturation and stability of newly synthesized psbA protein.


Pssm-ID: 432211  Cd Length: 150  Bit Score: 153.61  E-value: 5.79e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224006524   87 KQLRTREAEQRDAELQKLRDlRATDSLLKEDPNAA---AIPEKVAQRMGKRMLPFVGVPLFGTFATFIGFWYAAVYKDME 163
Cdd:pfam11947  13 KRKKPPKAAKKSAKVKKETK-RAADSAGKKDKNEAeemAIPEVVSQRMIRRMAFFSGIPTALGVATFVVFYLLVSGAWFD 91

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 224006524  164 FQPAIVASTSFVFLAIGLLGITYSVMSSSWDEDREGSGLGFDEFSKNVDSLKEGLSRTK 222
Cdd:pfam11947  92 LPPWAVLLVSMGFFGLGVLGLSYGVLSASWDEEREGSLLGWEEFKTNWGRMIEAWRSAR 150
Pam68 COG5778
Photosystem II assembly factor PAM68, DUF3464 (PF11947) domain [Energy production and ...
 110-217 1.74e-26

Photosystem II assembly factor PAM68, DUF3464 (PF11947) domain [Energy production and conversion];


Pssm-ID: 444488  Cd Length: 158  Bit Score: 100.80  E-value: 1.74e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224006524 110 TDSLLKEDPNAAAIPEKVAQRMGKRMLPFVGVPLFGTFATFIGFWYAAVYKDMEFQPAIVASTSFVFLAIGLLGITYSVM 189
Cdd:COG5778   40 AAKKPKREKESMAIPEVVSQRMVRRMALFSGIPTALGILTFVVSYLIVSNDWFELPNTAVLLVSMGFFGLGVLGLSYGVL 119

                         90       100
                 ....*....|....*....|....*...
gi 224006524 190 SSSWDEDREGSGLGFDEFSKNVDSLKEG 217
Cdd:COG5778  120 SASWDEERSGSLLGWQEFKTNFGRMTAA 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH