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Conserved domains on  [gi|198432030|ref|XP_002129379|]
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protein FAM166B isoform X1 [Ciona intestinalis]

Protein Classification

FAM166B family protein( domain architecture ID 10566290)

FAM166B family protein is a DUF2475 domain-containing protein; similar to Danio rerio protein FAM166B

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2475 pfam10629
Protein of unknown function (DUF2475); This family of proteins has no known function.
 21-53 2.03e-10

Protein of unknown function (DUF2475); This family of proteins has no known function.


:

Pssm-ID: 431404  Cd Length: 67  Bit Score: 55.86  E-value: 2.03e-10
                          10        20        30
                  ....*....|....*....|....*....|...
gi 198432030   21 EPYHVPGYAGYRPQFKYQCSETFGNSTHRLLTS 53
Cdd:pfam10629   1 PPHLMPGYRGYCPQVKYSFGDTYGNTTAKLFQD 33
DUF2475 super family cl11240
Protein of unknown function (DUF2475); This family of proteins has no known function.
 294-321 6.15e-05

Protein of unknown function (DUF2475); This family of proteins has no known function.


The actual alignment was detected with superfamily member pfam10629:

Pssm-ID: 431404  Cd Length: 67  Bit Score: 40.45  E-value: 6.15e-05
                          10        20
                  ....*....|....*....|....*...
gi 198432030  294 DSGLIPRYAGYVPGQKFRFGHTFGDSTE 321
Cdd:pfam10629   1 PPHLMPGYRGYCPQVKYSFGDTYGNTTA 28
 
Name Accession Description Interval E-value
DUF2475 pfam10629
Protein of unknown function (DUF2475); This family of proteins has no known function.
 21-53 2.03e-10

Protein of unknown function (DUF2475); This family of proteins has no known function.


Pssm-ID: 431404  Cd Length: 67  Bit Score: 55.86  E-value: 2.03e-10
                          10        20        30
                  ....*....|....*....|....*....|...
gi 198432030   21 EPYHVPGYAGYRPQFKYQCSETFGNSTHRLLTS 53
Cdd:pfam10629   1 PPHLMPGYRGYCPQVKYSFGDTYGNTTAKLFQD 33
DUF2475 pfam10629
Protein of unknown function (DUF2475); This family of proteins has no known function.
 294-321 6.15e-05

Protein of unknown function (DUF2475); This family of proteins has no known function.


Pssm-ID: 431404  Cd Length: 67  Bit Score: 40.45  E-value: 6.15e-05
                          10        20
                  ....*....|....*....|....*...
gi 198432030  294 DSGLIPRYAGYVPGQKFRFGHTFGDSTE 321
Cdd:pfam10629   1 PPHLMPGYRGYCPQVKYSFGDTYGNTTA 28
 
Name Accession Description Interval E-value
DUF2475 pfam10629
Protein of unknown function (DUF2475); This family of proteins has no known function.
 21-53 2.03e-10

Protein of unknown function (DUF2475); This family of proteins has no known function.


Pssm-ID: 431404  Cd Length: 67  Bit Score: 55.86  E-value: 2.03e-10
                          10        20        30
                  ....*....|....*....|....*....|...
gi 198432030   21 EPYHVPGYAGYRPQFKYQCSETFGNSTHRLLTS 53
Cdd:pfam10629   1 PPHLMPGYRGYCPQVKYSFGDTYGNTTAKLFQD 33
DUF2475 pfam10629
Protein of unknown function (DUF2475); This family of proteins has no known function.
 294-321 6.15e-05

Protein of unknown function (DUF2475); This family of proteins has no known function.


Pssm-ID: 431404  Cd Length: 67  Bit Score: 40.45  E-value: 6.15e-05
                          10        20
                  ....*....|....*....|....*...
gi 198432030  294 DSGLIPRYAGYVPGQKFRFGHTFGDSTE 321
Cdd:pfam10629   1 PPHLMPGYRGYCPQVKYSFGDTYGNTTA 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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