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Conserved domains on  [gi|528515710|ref|XP_001332567|]
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coiled-coil domain-containing glutamate-rich protein 1 [Danio rerio]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CCER1 super family cl21298
Coiled-coil domain-containing glutamate-rich protein family 1; This is a family of coiled-coil ...
 41-107 1.05e-10

Coiled-coil domain-containing glutamate-rich protein family 1; This is a family of coiled-coil family proteins found in eukaryotes. Proteins in this family are typically between 160 and 397 amino acids in length.


The actual alignment was detected with superfamily member pfam15482:

Pssm-ID: 406044  Cd Length: 213  Bit Score: 58.75  E-value: 1.05e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528515710   41 GAKHKWHKWGR---RPARRTEMRRHRARLSrwsgtlLSLRPANVQGNRAPGMRAPRNTNQFLMHEKYQMM 107
Cdd:pfam15482 132 GRKKRWGRRGRglrRQPRGSSPRSPPVDLS------MLLRPVNLYGWRAPGMRAPRNTTQFIMNQIYEDM 195
 
Name Accession Description Interval E-value
CCER1 pfam15482
Coiled-coil domain-containing glutamate-rich protein family 1; This is a family of coiled-coil ...
 41-107 1.05e-10

Coiled-coil domain-containing glutamate-rich protein family 1; This is a family of coiled-coil family proteins found in eukaryotes. Proteins in this family are typically between 160 and 397 amino acids in length.


Pssm-ID: 406044  Cd Length: 213  Bit Score: 58.75  E-value: 1.05e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528515710   41 GAKHKWHKWGR---RPARRTEMRRHRARLSrwsgtlLSLRPANVQGNRAPGMRAPRNTNQFLMHEKYQMM 107
Cdd:pfam15482 132 GRKKRWGRRGRglrRQPRGSSPRSPPVDLS------MLLRPVNLYGWRAPGMRAPRNTTQFIMNQIYEDM 195
 
Name Accession Description Interval E-value
CCER1 pfam15482
Coiled-coil domain-containing glutamate-rich protein family 1; This is a family of coiled-coil ...
 41-107 1.05e-10

Coiled-coil domain-containing glutamate-rich protein family 1; This is a family of coiled-coil family proteins found in eukaryotes. Proteins in this family are typically between 160 and 397 amino acids in length.


Pssm-ID: 406044  Cd Length: 213  Bit Score: 58.75  E-value: 1.05e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528515710   41 GAKHKWHKWGR---RPARRTEMRRHRARLSrwsgtlLSLRPANVQGNRAPGMRAPRNTNQFLMHEKYQMM 107
Cdd:pfam15482 132 GRKKRWGRRGRglrRQPRGSSPRSPPVDLS------MLLRPVNLYGWRAPGMRAPRNTTQFIMNQIYEDM 195
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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