|
Name |
Accession |
Description |
Interval |
E-value |
| CEP209_CC5 |
pfam16574 |
Coiled-coil region of centrosome protein CE290; CEP290 and similar centrosomal proteins carry ... |
1290-1417 |
3.21e-44 |
|
Coiled-coil region of centrosome protein CE290; CEP290 and similar centrosomal proteins carry a number of coiled-coil regions, and this is the fifth along the length of the protein. It is thought that the proteins are involved in cilia biosynthesis.
Pssm-ID: 465184 [Multi-domain] Cd Length: 128 Bit Score: 157.16 E-value: 3.21e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1290 TMIQLQNDKLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTLKDTKGAQKVINWHMKIEELRLQELKLNRELVKD 1369
Cdd:pfam16574 1 TMIQLQEDKAKLQEELKHAEEERRRAEDRAQELELKLKGLEELISTLKDGKGAQKVTEWHKKMEEIRLQELKLQRELSKQ 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1622846131 1370 KEEIKYLNNIISEYERTISSLEEEIVQQNKFHEERQLAWDQREVDLER 1417
Cdd:pfam16574 81 KEEIKYLENLIREQERTISSLEEEIVQQTKLHEERQLAWDQREVELER 128
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
93-854 |
1.59e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 1.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 93 KLENELEMAQQSAGGRDTRFLRDEIRQLAKQLEQKDRELEDIEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKK 172
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 173 NEQLCQDIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEK 252
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 253 MTDEYNRMKAIVHQTDNVIDQLKKENDHYRLQVQELTD-LLKAKNEEDDPIMVAVNAKVEEWKLILSSKDDEIIEYQQML 331
Cdd:TIGR02168 377 LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDrRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 332 HNLREKLKNA--QLDADKSNVMALQQGIQERDSQIKMLTEQVEQYTKEMEKntfIIEDLKNELQRNKGASTLSQQthyMK 409
Cdd:TIGR02168 457 ERLEEALEELreELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG---VKALLKNQSGLSGILGVLSEL---IS 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 410 IQSTLDILKEKTKEAERTAELAEADarEKDKELVETLKRLKDYESGVYGLEDA-----VVEIKNCKNQIKIRDREIEILT 484
Cdd:TIGR02168 531 VDEGYEAAIEAALGGRLQAVVVENL--NAAKKAIAFLKQNELGRVTFLPLDSIkgteiQGNDREILKNIEGFLGVAKDLV 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 485 KEINKLELKINDFL-------DENEALRERVGLEPKTMI---DLTEFRNSKRLKQQQYRAENQILL--KEIESLEEERLD 552
Cdd:TIGR02168 609 KFDPKLRKALSYLLggvlvvdDLDNALELAKKLRPGYRIvtlDGDLVRPGGVITGGSAKTNSSILErrREIEELEEKIEE 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 553 LKKKIRQMAQERgkrsatSGLTTEDLNLTENISQGDRISERKLDLLSL--KNMSEAKSKNEFLSRELIEKERDLERSRTV 630
Cdd:TIGR02168 689 LEEKIAELEKAL------AELRKELEELEEELEQLRKELEELSRQISAlrKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 631 IAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDPDVNggetSLIIPSLERLVNAIESKNAEGIFDASlHLKAQVDQLT 710
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL----REALDELRAELTLLNEEAANLRERLE-SLERRIAATE 837
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 711 GRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKE-TSLLRQSEGSNVVFKGIDLPDGIAPSSASIINSQNEYLIHLL 789
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESElEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622846131 790 QELENKEKKLKNLEDSLE-DYNRKFAVIRHQQSLLYKEYLSEKDTWKTESKTIKEEKRKLEDQIQQ 854
Cdd:TIGR02168 918 EELREKLAQLELRLEGLEvRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
525-1276 |
2.07e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 2.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 525 KRLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQERgkRSATSGLTTEDLNLTENISQGDRISERKLD----LLSL 600
Cdd:TIGR02168 216 KELKAELRELELALLVLRLEELREELEELQEELKEAEEEL--EELTAELQELEEKLEELRLEVSELEEEIEElqkeLYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 601 KN-MSEAKSKNEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDpdvnggetsliIPS 679
Cdd:TIGR02168 294 ANeISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE-----------LEE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 680 LERLVNAIESKNAEgifdaslhLKAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSLLRQSEGSNv 759
Cdd:TIGR02168 363 LEAELEELESRLEE--------LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA- 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 760 vfkGIDLPDGIAPSSASIINSQNEYLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLyKEYLSEKDTWKTESK 839
Cdd:TIGR02168 434 ---ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL-ERLQENLEGFSEGVK 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 840 TIKEEKRKLEDQIQQ--DAIKV-KEYNNLLNALqmdsdemkkiLAENSRKITVlqVNEKSLIRQYTILVE--------LE 908
Cdd:TIGR02168 510 ALLKNQSGLSGILGVlsELISVdEGYEAAIEAA----------LGGRLQAVVV--ENLNAAKKAIAFLKQnelgrvtfLP 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 909 RQLRKENEKQKNELLSMEAEVCEkLGCLQRFKEMAIFKIAALQKVVDNSVCLSELELANKQYNELTSKYRDI-------- 980
Cdd:TIGR02168 578 LDSIKGTEIQGNDREILKNIEGF-LGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVtldgdlvr 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 981 ---------LQKDNMLVQRTSNLEHLECENASLKEQVESINKELEITKEKLHTIEQAWEQETRLGNEssmdkakksitns 1051
Cdd:TIGR02168 657 pggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE------------- 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1052 divsISKKITMLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFAELTKiNLDAQKVEQMLRDELAGSVSKAV 1131
Cdd:TIGR02168 724 ----LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE-ELAEAEAEIEELEAQIEQLKEEL 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1132 SdADRQRILELEKNEMELKVEVSKLRE-----ISDIARRQVEILNAQQQSREK--EVESLRMQLLDYQAQSDE--KALIA 1202
Cdd:TIGR02168 799 K-ALREALDELRAELTLLNEEAANLRErleslERRIAATERRLEDLEEQIEELseDIESLAAEIEELEELIEEleSELEA 877
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622846131 1203 KLHQHNvSLQLSEATALGKLESITSKLQKMEAYNMRLEQKLDEKEQAL--YYARLEGrnrakhLRQTIQSLRRQFS 1276
Cdd:TIGR02168 878 LLNERA-SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLaqLELRLEG------LEVRIDNLQERLS 946
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1218-2001 |
2.31e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 2.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1218 ALGKLESITSKLQKMEAYNMRLEQKLD----EKEQALYYARLEGRNRAKHLRQTIQSLRRQFSGALPLAQQEKFSKTMI- 1292
Cdd:TIGR02168 177 TERKLERTRENLDRLEDILNELERQLKslerQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELe 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1293 QLQNDKLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTLKDTKGAQKV--INWHMKIEELRLQELKLNRELVKDK 1370
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRErlANLERQLEELEAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1371 EEIKYLNNIISEYERTISSLEEEIVQQNKFHEERQLAWDQREVDLERQLDIFD-------RQQNEILNAAQKFEEATGSI 1443
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAqlelqiaSLNNEIERLEARLERLEDRR 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1444 PD--------PSLPLPNQLEMALRKIKENIRIILETRATCRSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATAE 1515
Cdd:TIGR02168 417 ERlqqeieelLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1516 REkliaelGRKEMEPKSHHTLKIAHQTIANMQARLNQKEEVLKKYQHLLEKAREEQRE-IVKKHEEDLhilhhKLELQAD 1594
Cdd:TIGR02168 497 LQ------ENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQaVVVENLNAA-----KKAIAFL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1595 SSLNKFKQTAWDLMKQSPTPVPTNKHFIR---------LAEMEQTVAEQDDSLSSLLIKL-------------------- 1645
Cdd:TIGR02168 566 KQNELGRVTFLPLDSIKGTEIQGNDREILkniegflgvAKDLVKFDPKLRKALSYLLGGVlvvddldnalelakklrpgy 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1646 ---------------------KKVSQDLERQREITEL--KVKEFENiklwLQENHEDEVKKVKAEVEDLRYLLDQSQKES 1702
Cdd:TIGR02168 646 rivtldgdlvrpggvitggsaKTNSSILERRREIEELeeKIEELEE----KIAELEKALAELRKELEELEEELEQLRKEL 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1703 QCLKSELQAQKEansraptttmrnLVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAhlnvqqivd 1782
Cdd:TIGR02168 722 EELSRQISALRK------------DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA--------- 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1783 rhtrelKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKDEIDQENDELKRQIKRLTsgL 1862
Cdd:TIGR02168 781 ------EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS--E 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1863 QGKPLTDNkqslIEELQRKIKKLESQLEGKVDEVDLKPMKEKNAKEELIrweegkKWQAKIEGIRNKLKEKEGEVCTLTK 1942
Cdd:TIGR02168 853 DIESLAAE----IEELEELIEELESELEALLNERASLEEALALLRSELE------ELSEELRELESKRSELRRELEELRE 922
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622846131 1943 QLNTLKDLFAKADKEKLTLQRKLKTTGMTVDQVLGVRALESEKELEELKKRNLDLENDI 2001
Cdd:TIGR02168 923 KLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
87-563 |
5.94e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 65.14 E-value: 5.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 87 LKTKVMKLENELEMAQQSAGGRDTRFLR---DEIRQLAKQLEQKDREL-EDIEKELEKEKKVNEQLALRNEEAENENSKL 162
Cdd:pfam15921 236 LKGRIFPVEDQLEALKSESQNKIELLLQqhqDRIEQLISEHEVEITGLtEKASSARSQANSIQSQLEIIQEQARNQNSMY 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 163 RRENKRLKKKNEQLCQDIIDYQKQIDSQKETLlsrrgedsdyRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKN 242
Cdd:pfam15921 316 MRQLSDLESTVSQLRSELREAKRMYEDKIEEL----------EKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 243 LEESVQEMEKMTDEYNRMKAIVHQTDNVIDQLKKENDHYRLQVQELTDLLKAKNEE----DDPIMVAVNAKVEEWKLIlS 318
Cdd:pfam15921 386 LHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSEcqgqMERQMAAIQGKNESLEKV-S 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 319 SKDDEIIEYQQMLHNLREKL--KNAQLDADKSNVMALQQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNElqrnk 396
Cdd:pfam15921 465 SLTAQLESTKEMLRKVVEELtaKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE----- 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 397 gastlsqQTHYMKIQSTLDILKEKTKEAERTAELAeadarekdKELVETLKRLkdyeSGVYGLEDAVVEIKNCKNQIKIR 476
Cdd:pfam15921 540 -------GDHLRNVQTECEALKLQMAEKDKVIEIL--------RQQIENMTQL----VGQHGRTAGAMQVEKAQLEKEIN 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 477 DREIEIltKEINKLELKINDFLDENEALRERVGLEPKTMIDL--TEFRNSKRLKQQQYRAENQI--LLKEIESLEEERLD 552
Cdd:pfam15921 601 DRRLEL--QEFKILKDKKDAKIRELEARVSDLELEKVKLVNAgsERLRAVKDIKQERDQLLNEVktSRNELNSLSEDYEV 678
|
490
....*....|.
gi 1622846131 553 LKKKIRQMAQE 563
Cdd:pfam15921 679 LKRNFRNKSEE 689
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1641-1934 |
5.04e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 5.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1641 LLIKLKKVSQDLERQREITELKVKEFENIKLWLQEnHEDEVKKVKAEVEDLRYLLDQSQKESQCLKSELQaqKEANSRAP 1720
Cdd:COG1196 230 LLLKLRELEAELEELEAELEELEAELEELEAELAE-LEAELEELRLELEELELELEEAQAEEYELLAELA--RLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1721 TTTMRN----LVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAhlnvQQIVDRHTRELKTQVEDLN 1796
Cdd:COG1196 307 LEERRReleeRLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA----EEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1797 ENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKDEIDQENDELKRQIKRLTSGLQGKpltDNKQSLIE 1876
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE---AELEEEEE 459
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622846131 1877 ELQRKIKKLESQLEGKVDEV-DLKPMKEKNAKEELIRWEEGKKWQAKIEGIRNKLKEKE 1934
Cdd:COG1196 460 ALLELLAELLEEAALLEAALaELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
21-662 |
4.57e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 4.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 21 QEELADNLLISLSKVEVNELKSEKQENVIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFEnQLKTKVMKLENELEM 100
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE-EAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 101 AQQsaggrDTRFLRDEIRQLAKQLEQKDRELEDIEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLCQDI 180
Cdd:COG1196 300 LEQ-----DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 181 IDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRM 260
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 261 KAIVHQTDNVIDQLKKENDHYRLQVQELTDLL---KAKNEEDDPIMVAVNAKVEEWKLILSSKDDEIIEyqQMLHNLREK 337
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELaeaAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA--GAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 338 LKNAQLDADKSNVMALQQGIQERDSQIKMLteqveqytkemekntfiIEDLKnelQRNKGASTLSQQThymkiqstlDIL 417
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAA-----------------IEYLK---AAKAGRATFLPLD---------KIR 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 418 KEKTKEAERTAELAEADAREKDKELVETLKRLKDYESGVYGLEDAVVEIKNCKNQIKIRDREIEILTKEInklelkindf 497
Cdd:COG1196 584 ARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEG---------- 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 498 ldenEALRERVGLEPKTMIDLTEFRNSKRLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQERGKRSATSGLTTED 577
Cdd:COG1196 654 ----EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQ 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 578 LNLTENISQGDRISERKLDLLSLKNMSEAKSKNEFLSRELIEKERDLERSRTV----IAKF---QNKLKELVEENKQLEE 650
Cdd:COG1196 730 LEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPVnllaIEEYeelEERYDFLSEQREDLEE 809
|
650
....*....|..
gi 1622846131 651 GMKEILQAIKEM 662
Cdd:COG1196 810 ARETLEEAIEEI 821
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1663-2452 |
1.10e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.38 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1663 VKEFENIKLWLQENHEDEVKKVKAE--VEDLRYLLDQSQKESQCLKSELQAQKEANSRAPTTTMRNLVERLKSQLALKEK 1740
Cdd:PTZ00121 1199 ARKAEAARKAEEERKAEEARKAEDAkkAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR 1278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1741 QQKALSRALLELRAEMTAAAEERIISATSQKEAHlnvqqiVDRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNL 1820
Cdd:PTZ00121 1279 KADELKKAEEKKKADEAKKAEEKKKADEAKKKAE------EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEA 1352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1821 NDLNNELQKKQKAYNKILREKDEIDQENDELKRQIKRLTSGLQGKPLTDNKQSLIEELQRKikkleSQLEGKVDEVDLKP 1900
Cdd:PTZ00121 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA-----AAAKKKADEAKKKA 1427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1901 MKEKNAKEELIRWEEGKKwqakIEGIRNKLKEKEgevctltkqlnTLKDLFAKADKEKLTLQRKLKTTGMTVDQVLGVRA 1980
Cdd:PTZ00121 1428 EEKKKADEAKKKAEEAKK----ADEAKKKAEEAK-----------KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKA 1492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1981 LESEKELEELKKRNLDLENDILYMRAHQALPRDSVvedlhlqnRYLQEKLHALEKQLSKDtysrpsisgIGSDDHCQREQ 2060
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEA--------KKAEEAKKADEAKKAEE---------KKKADELKKAE 1555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2061 ELQKENLKLSSEniELKFQLEQANKDLPRL-------KNQVRDLKEMCEFLKKEKAEVERKLGHVRGSGRSGKTIPELEK 2133
Cdd:PTZ00121 1556 ELKKAEEKKKAE--EAKKAEEDKNMALRKAeeakkaeEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK 1633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2134 TIGLMKKVVEKVQRENEQLKKAsgiltsEKMANIEQENEKLKAELEKLKAhfgHQLSMHYESKTKGTEKIIAEN------ 2207
Cdd:PTZ00121 1634 KVEQLKKKEAEEKKKAEELKKA------EEENKIKAAEEAKKAEEDKKKA---EEAKKAEEDEKKAAEALKKEAeeakka 1704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2208 ERLRKELKKETDAAEKLRIAKNNLEILNEKMTVQLEETGKRLQFAESRgpqlEGADSKswksivVTRMYETKLKELETDI 2287
Cdd:PTZ00121 1705 EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD----EEEKKK------IAHLKKEEEKKAEEIR 1774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2288 AKKNQSITDlkQLVKEATEREQKVKKYTEDLEEQIKILK--------HVPEGAETEQGLRQElqVLRLANSQLDKEKAEL 2359
Cdd:PTZ00121 1775 KEKEAVIEE--ELDEEDEKRRMEVDKKIKDIFDNFANIIeggkegnlVINDSKEMEDSAIKE--VADSKNMQLEEADAFE 1850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2360 IHQIEANKDQSGAESTIPDADQLKEKVKDLETQLKMSDLEKQhLKEEIKKLKKELENFDPSFFEEIEDlKYNYKEEVKKN 2439
Cdd:PTZ00121 1851 KHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEK-IDKDDIEREIPNNNMAGKNNDIIDD-KLDKDEYIKRD 1928
|
810
....*....|....
gi 1622846131 2440 I-LLEEKVKKLSEQ 2452
Cdd:PTZ00121 1929 AeETREEIIKISKK 1942
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
968-1273 |
3.71e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 3.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 968 KQYNELTSKYRDILQKdnmlvQRTSNLEHLECENASLKEQVESINKELEITKEKLHTIEQAWEQE----TRLGNESSMDK 1043
Cdd:COG1196 213 ERYRELKEELKELEAE-----LLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELrlelEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1044 AKKSITNSDIVSISKKITMLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFAELTKINLDAQKVEQMLRDEL 1123
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1124 AGSVSKAVS-----DADRQRILELEKNEMELKVEVSKL-REISDIARRQVEILNAQQQSREKEVESLRMQLLDYQAQSDE 1197
Cdd:COG1196 368 LEAEAELAEaeeelEELAEELLEALRAAAELAAQLEELeEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622846131 1198 KALIAKLHQHNVSLQLSEATALGKLESITSKLQKMEAYNMRLEQKLDEKEQALyyARLEGRNRAKHLRQTIQSLRR 1273
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE--ADYEGFLEGVKAALLLAGLRG 521
|
|
| DUF1633 |
pfam07794 |
Protein of unknown function (DUF1633); This family contains sequences derived from a group of ... |
1766-1942 |
4.01e-06 |
|
Protein of unknown function (DUF1633); This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana. These sequences are highly similar and the region concerned is about 100 residues long.
Pssm-ID: 116408 [Multi-domain] Cd Length: 698 Bit Score: 52.20 E-value: 4.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1766 SATSQKEAHLNVQQivdrhTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQ----KKQKAYNKILRek 1841
Cdd:pfam07794 458 RAIREEDPHLGADQ-----DREVRFGAEGIVPGIERLKIELSTSKDLEKGYAEKIGFMEMEFGgleaDKQMARNQIHR-- 530
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1842 deIDQENDELKRQIKRLTSGLQG--KPLTDNKQSLIEELQRKI---------KKLESQLEGKVDEVDLK-PMKEKNAKEE 1909
Cdd:pfam07794 531 --LEEKKDELSKKVLDLTSIAQGakKAVHDAKVELAAAYLKLLagikdkwvaKKEFTVLEGQAAEVESNlALIDQITKAA 608
|
170 180 190
....*....|....*....|....*....|...
gi 1622846131 1910 LIRWEEGKKWQAKIEGIRNKLKEKEGEVCTLTK 1942
Cdd:pfam07794 609 IDLTLEKPRFQAEIDDLEARCKLKEVSDFTLSK 641
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1039-1806 |
2.18e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 2.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1039 SSMDKAKKSITNSDIVSISKKITMLEMKELNERQRAEHCQKMYEHLRTS--LKQMEERNFELETKFAELTKINLDAQKVE 1116
Cdd:PTZ00121 1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAeeARKAEDARKAEEARKAEDAKRVEIARKAE 1161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1117 QMLRDELAGSVSKAVSDADRQRILELEKNEMELKVEVSKLREISDIARRQVEILNAQQQSREKEVESLRMqlLDYQAQSD 1196
Cdd:PTZ00121 1162 DARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKK--AEEAKKDA 1239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1197 EKALIAKLHQHNVSLQLSEATALGKLESITSKLQKMEAYNMRLEQKLDEKEQALYYARLEGRNRAKHLRQTIQSLRRqfs 1276
Cdd:PTZ00121 1240 EEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKK--- 1316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1277 galplAQQEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTLKDTKGAQKVINWHMKIEELR 1356
Cdd:PTZ00121 1317 -----ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1357 LQElklnrELVKDKEEIKylnniiseyeRTISSLEEEIVQQNKFHEERQLAWDQREVDLERQLDIFDRQQNEilnAAQKF 1436
Cdd:PTZ00121 1392 KAD-----EAKKKAEEDK----------KKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE---AKKKA 1453
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1437 EEAtgsipdpslplpnqlemalrKIKENIRIILETRATCRSLEEKLKEKESALRLAEQNILSRDKViNELRlrlpaTAER 1516
Cdd:PTZ00121 1454 EEA--------------------KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKA-DEAK-----KAAE 1507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1517 EKLIAELGRKEMEPKSHHTLKIAHQTIANMQARLNQ---KEEVLKKYQHLLEKAREEQREIVKKHEEDLHILHHKLELQA 1593
Cdd:PTZ00121 1508 AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEekkKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK 1587
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1594 DSSlnkfKQTAWDLMKQSPTPVPTNKHFIRLAEMEQTVAEQddslsslliklkkVSQDLERQREITELKVKEFENIKLWL 1673
Cdd:PTZ00121 1588 KAE----EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE-------------LKKAEEEKKKVEQLKKKEAEEKKKAE 1650
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1674 QENHEDEVKKVKAEvEDLRYLLDQSQKESQCLKSELQAQKEANSRAPTTTMRNLVERLKSQLALKEKQQKALSRALLELR 1753
Cdd:PTZ00121 1651 ELKKAEEENKIKAA-EEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENK 1729
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 1622846131 1754 AEMTAAAEERiiSATSQKEAHLNVQQIVDRHTRELKTQVEDLNENLLKLKEAL 1806
Cdd:PTZ00121 1730 IKAEEAKKEA--EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
971-1311 |
7.22e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.20 E-value: 7.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 971 NELTSKYRDILQKDNMLVQRTSNLEHLECENASLKEQVESINKELEiTKEKLHTIEQAWEQEtrlgnessMDKakksitN 1050
Cdd:pfam17380 268 NEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVE-RRRKLEEAEKARQAE--------MDR------Q 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1051 SDIVSISKKITMLEMKELnERQRAEHCQKMYEHLRtslkqMEERNFELEtKFAELTKINLDAQKVEQMLRDELAGSVSKA 1130
Cdd:pfam17380 333 AAIYAEQERMAMEREREL-ERIRQEERKRELERIR-----QEEIAMEIS-RMRELERLQMERQQKNERVRQELEAARKVK 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1131 VSDADRQRILELEKNEMEL------KVEVSKLREISDIARRQVEILNAQQQSREKEVESLRMQlldyQAQSDEKALIAKL 1204
Cdd:pfam17380 406 ILEEERQRKIQQQKVEMEQiraeqeEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQ----EEERKRKKLELEK 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1205 HQHNVSLQLSEATALGKLESITSKLQKMEAYNMR--LEQKLDEKEQALYYArlEGRNRAKHLRQTIQSL--RRQFSGALP 1280
Cdd:pfam17380 482 EKRDRKRAEEQRRKILEKELEERKQAMIEEERKRklLEKEMEERQKAIYEE--ERRREAEEERRKQQEMeeRRRIQEQMR 559
|
330 340 350
....*....|....*....|....*....|.
gi 1622846131 1281 LAQQEKFSKTMIQLQNDKLKIMQEMKNSQQE 1311
Cdd:pfam17380 560 KATEERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
113-663 |
8.25e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 8.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 113 LRDEIRQLAKQLEQKDRELEDIEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQL--CQDIIDYQKQIDSQ 190
Cdd:PRK03918 212 ISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIeeLEEKVKELKELKEK 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 191 KETLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMR------KNLEESVQEMEKMTDEYNRMKAIV 264
Cdd:PRK03918 292 AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEelkkklKELEKRLEELEERHELYEEAKAKK 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 265 HQtdnvIDQLKKENDHYRLQ--VQELTDLLKAKNEEDDPIMvAVNAKVEEWKLILSSKDDEIIEyqqmlhnlrekLKNAQ 342
Cdd:PRK03918 372 EE----LERLKKRLTGLTPEklEKELEELEKAKEEIEEEIS-KITARIGELKKEIKELKKAIEE-----------LKKAK 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 343 ldaDKSNVMALQQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQrnKGASTLSQQTHYMKIQSTLDILKEKTk 422
Cdd:PRK03918 436 ---GKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELR--ELEKVLKKESELIKLKELAEQLKELE- 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 423 eaERTAELAEADAREKDKELVETLKRLKDYESGVYGLEDAVVEIKNCKNQIKIRDREIEILTKEINKLELKINDFLDEN- 501
Cdd:PRK03918 510 --EKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESv 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 502 EALRERVGLEPKTMIDLTEFRNSKRlkqqqyraENQILLKEIESLEEErldlKKKIRQMAQERGKRSATSGLTTEDLNLT 581
Cdd:PRK03918 588 EELEERLKELEPFYNEYLELKDAEK--------ELEREEKELKKLEEE----LDKAFEELAETEKRLEELRKELEELEKK 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 582 ENISQGDRISERKLDLLSLknmseaksknefLSRELIEKERdLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKE 661
Cdd:PRK03918 656 YSEEEYEELREEYLELSRE------------LAGLRAELEE-LEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALER 722
|
..
gi 1622846131 662 MQ 663
Cdd:PRK03918 723 VE 724
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1624-2393 |
1.13e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1624 LAEMEQTVAEQDDSLSSLLIKLKKVSQDLERQREITELKvKEFENIKLWL----QENHEDEVKKVKAEVEDLRYLLDQSQ 1699
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALL-KEKREYEGYEllkeKEALERQKEAIERQLASLEEELEKLT 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1700 KESQCLKSELqAQKEANSRAPTTTMRNLVE----RLKSQLALKEKQQKALSRALLELRAEMTAAAEERiisatSQKEAHL 1775
Cdd:TIGR02169 258 EEISELEKRL-EEIEQLLEELNKKIKDLGEeeqlRVKEKIGELEAEIASLERSIAEKERELEDAEERL-----AKLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1776 NVQQivdRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKDEIDQENDELKRQI 1855
Cdd:TIGR02169 332 DKLL---AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1856 KRLTSGLQGKP--LTDNKQSlIEELQRKIKKLESQLEGKVDEVDLKPMKEKNAKEELIRWEEGK-KWQAKIEGIRNKLKE 1932
Cdd:TIGR02169 409 DRLQEELQRLSeeLADLNAA-IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELyDLKEEYDRVEKELSK 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1933 KEGEVCTLTKQLNTLKDLFAKADKEKLTLQRKLKTTGMTVDQVLGVRALESEKELEELKKR--NLDLEND------ILYM 2004
Cdd:TIGR02169 488 LQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRlnNVVVEDDavakeaIELL 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2005 RAHQA-----LPRDSVvEDLHLQNRYLQEK--------LHALEKQLSKDTYSRPSISGIGSDDHCQREQELQKENLKLSS 2071
Cdd:TIGR02169 568 KRRKAgratfLPLNKM-RDERRDLSILSEDgvigfavdLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYRMVTLEG 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2072 ENIE---------------LKFQLEQANKdLPRLKNQVRDLKEMCEFLKKEKAEVERKLGHVRGS-GRSGKTIPELEKTI 2135
Cdd:TIGR02169 647 ELFEksgamtggsraprggILFSRSEPAE-LQRLRERLEGLKRELSSLQSELRRIENRLDELSQElSDASRKIGEIEKEI 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2136 GLMKKVVEKVQRENEQLKKASGILTSEKMANI-------------EQENEKLKAELEKLKAHFGHQLSMHYESKTKGTEK 2202
Cdd:TIGR02169 726 EQLEQEEEKLKERLEELEEDLSSLEQEIENVKselkelearieelEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEE 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2203 IIAENER----LRKELKKETDAAEKLRIAKNNLEILNEKMTVQLEETGKRLQFAESRGPQLEgadskswksivvtrmyeT 2278
Cdd:TIGR02169 806 EVSRIEArlreIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELE-----------------E 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2279 KLKELETDIAKKNQSITDLKQLVKEATEREQKVKKYTEDLEEQIKILKHVPEgaeteqGLRQELQVLRLANSQLDKEKAE 2358
Cdd:TIGR02169 869 ELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS------ELKAKLEALEEELSEIEDPKGE 942
|
810 820 830
....*....|....*....|....*....|....*
gi 1622846131 2359 LIHQIEAnkdqsgaestIPDADQLKEKVKDLETQL 2393
Cdd:TIGR02169 943 DEEIPEE----------ELSLEDVQAELQRVEEEI 967
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1781-2408 |
8.93e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 8.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1781 VDRHTRELKTQVEDLNEnllKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKDEIDQENDELKRQIKRLTS 1860
Cdd:pfam15921 76 IERVLEEYSHQVKDLQR---RLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1861 GLQG-----KPLTDNKQSLIEELQRKIKKLESQLEG------KVDEVDLKPMKEKNAKEELIRWEEGKKWQAKIEGIRNK 1929
Cdd:pfam15921 153 ELEAakclkEDMLEDSNTQIEQLRKMMLSHEGVLQEirsilvDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1930 LKEKEGEVCTLTKQLNTLKD---------LFAKADK-EKLTLQRKLKTTGMTvDQVLGVRALESEKELEELKKRNLDLEN 1999
Cdd:pfam15921 233 ISYLKGRIFPVEDQLEALKSesqnkiellLQQHQDRiEQLISEHEVEITGLT-EKASSARSQANSIQSQLEIIQEQARNQ 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2000 DILYMRAHQALPR--DSVVEDLHLQNRYLQEKLHALEKQL------------SKDTYSRPS------ISGIGSDDHcQRE 2059
Cdd:pfam15921 312 NSMYMRQLSDLEStvSQLRSELREAKRMYEDKIEELEKQLvlanselteartERDQFSQESgnlddqLQKLLADLH-KRE 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2060 QEL---QKENLKLSSENIELKFQLEQANKDLPRLKNQVRDLKEMCEFLKKE-KAEVERKLGHVRGSGRSGKTIP----EL 2131
Cdd:pfam15921 391 KELsleKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSEcQGQMERQMAAIQGKNESLEKVSsltaQL 470
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2132 EKTIGLMKKVVEKVQRENEQLKKASGILTSEKMANIEQEN--EKLKAELEKLKAHFGHQLS--MHYESKTKGTEKIIAEN 2207
Cdd:pfam15921 471 ESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERaiEATNAEITKLRSRVDLKLQelQHLKNEGDHLRNVQTEC 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2208 ERLRKELKKETDAAEKLRIAKNNL------------EILNEKMTVQLEETGKRLQFAESRGPQlegaDSKSWKsivvTRM 2275
Cdd:pfam15921 551 EALKLQMAEKDKVIEILRQQIENMtqlvgqhgrtagAMQVEKAQLEKEINDRRLELQEFKILK----DKKDAK----IRE 622
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2276 YETKLKELETDIAK-------KNQSITDLKQ----LVKEATEREQKVKKYTEDLEEQIKILKHVPEGAETEQGlRQELQv 2344
Cdd:pfam15921 623 LEARVSDLELEKVKlvnagseRLRAVKDIKQerdqLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTN-KLKMQ- 700
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622846131 2345 LRLANSQLDKEKAELIHQI----EANKDQSGAESTIP----DADQLKEKVKDLETQLKMSDLEKQHLKEEIK 2408
Cdd:pfam15921 701 LKSAQSELEQTRNTLKSMEgsdgHAMKVAMGMQKQITakrgQIDALQSKIQFLEEAMTNANKEKHFLKEEKN 772
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1097-1193 |
7.74e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.10 E-value: 7.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1097 ELETKFAELT-KINLDAQKVEQM------LRDELAGSVS-----KAVSDADRQRILELEKNEMELKVEVSKLREISDIAR 1164
Cdd:PRK09039 57 RLNSQIAELAdLLSLERQGNQDLqdsvanLRASLSAAEAersrlQALLAELAGAGAAAEGRAGELAQELDSEKQVSARAL 136
|
90 100
....*....|....*....|....*....
gi 1622846131 1165 RQVEILNAQqqsrekeVESLRMQLLDYQA 1193
Cdd:PRK09039 137 AQVELLNQQ-------IAALRRQLAALEA 158
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CEP209_CC5 |
pfam16574 |
Coiled-coil region of centrosome protein CE290; CEP290 and similar centrosomal proteins carry ... |
1290-1417 |
3.21e-44 |
|
Coiled-coil region of centrosome protein CE290; CEP290 and similar centrosomal proteins carry a number of coiled-coil regions, and this is the fifth along the length of the protein. It is thought that the proteins are involved in cilia biosynthesis.
Pssm-ID: 465184 [Multi-domain] Cd Length: 128 Bit Score: 157.16 E-value: 3.21e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1290 TMIQLQNDKLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTLKDTKGAQKVINWHMKIEELRLQELKLNRELVKD 1369
Cdd:pfam16574 1 TMIQLQEDKAKLQEELKHAEEERRRAEDRAQELELKLKGLEELISTLKDGKGAQKVTEWHKKMEEIRLQELKLQRELSKQ 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1622846131 1370 KEEIKYLNNIISEYERTISSLEEEIVQQNKFHEERQLAWDQREVDLER 1417
Cdd:pfam16574 81 KEEIKYLENLIREQERTISSLEEEIVQQTKLHEERQLAWDQREVELER 128
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
93-854 |
1.59e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 1.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 93 KLENELEMAQQSAGGRDTRFLRDEIRQLAKQLEQKDRELEDIEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKK 172
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 173 NEQLCQDIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEK 252
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 253 MTDEYNRMKAIVHQTDNVIDQLKKENDHYRLQVQELTD-LLKAKNEEDDPIMVAVNAKVEEWKLILSSKDDEIIEYQQML 331
Cdd:TIGR02168 377 LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDrRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 332 HNLREKLKNA--QLDADKSNVMALQQGIQERDSQIKMLTEQVEQYTKEMEKntfIIEDLKNELQRNKGASTLSQQthyMK 409
Cdd:TIGR02168 457 ERLEEALEELreELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG---VKALLKNQSGLSGILGVLSEL---IS 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 410 IQSTLDILKEKTKEAERTAELAEADarEKDKELVETLKRLKDYESGVYGLEDA-----VVEIKNCKNQIKIRDREIEILT 484
Cdd:TIGR02168 531 VDEGYEAAIEAALGGRLQAVVVENL--NAAKKAIAFLKQNELGRVTFLPLDSIkgteiQGNDREILKNIEGFLGVAKDLV 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 485 KEINKLELKINDFL-------DENEALRERVGLEPKTMI---DLTEFRNSKRLKQQQYRAENQILL--KEIESLEEERLD 552
Cdd:TIGR02168 609 KFDPKLRKALSYLLggvlvvdDLDNALELAKKLRPGYRIvtlDGDLVRPGGVITGGSAKTNSSILErrREIEELEEKIEE 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 553 LKKKIRQMAQERgkrsatSGLTTEDLNLTENISQGDRISERKLDLLSL--KNMSEAKSKNEFLSRELIEKERDLERSRTV 630
Cdd:TIGR02168 689 LEEKIAELEKAL------AELRKELEELEEELEQLRKELEELSRQISAlrKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 631 IAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDPDVNggetSLIIPSLERLVNAIESKNAEGIFDASlHLKAQVDQLT 710
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL----REALDELRAELTLLNEEAANLRERLE-SLERRIAATE 837
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 711 GRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKE-TSLLRQSEGSNVVFKGIDLPDGIAPSSASIINSQNEYLIHLL 789
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESElEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622846131 790 QELENKEKKLKNLEDSLE-DYNRKFAVIRHQQSLLYKEYLSEKDTWKTESKTIKEEKRKLEDQIQQ 854
Cdd:TIGR02168 918 EELREKLAQLELRLEGLEvRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
525-1276 |
2.07e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 2.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 525 KRLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQERgkRSATSGLTTEDLNLTENISQGDRISERKLD----LLSL 600
Cdd:TIGR02168 216 KELKAELRELELALLVLRLEELREELEELQEELKEAEEEL--EELTAELQELEEKLEELRLEVSELEEEIEElqkeLYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 601 KN-MSEAKSKNEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDpdvnggetsliIPS 679
Cdd:TIGR02168 294 ANeISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE-----------LEE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 680 LERLVNAIESKNAEgifdaslhLKAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSLLRQSEGSNv 759
Cdd:TIGR02168 363 LEAELEELESRLEE--------LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA- 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 760 vfkGIDLPDGIAPSSASIINSQNEYLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLyKEYLSEKDTWKTESK 839
Cdd:TIGR02168 434 ---ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL-ERLQENLEGFSEGVK 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 840 TIKEEKRKLEDQIQQ--DAIKV-KEYNNLLNALqmdsdemkkiLAENSRKITVlqVNEKSLIRQYTILVE--------LE 908
Cdd:TIGR02168 510 ALLKNQSGLSGILGVlsELISVdEGYEAAIEAA----------LGGRLQAVVV--ENLNAAKKAIAFLKQnelgrvtfLP 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 909 RQLRKENEKQKNELLSMEAEVCEkLGCLQRFKEMAIFKIAALQKVVDNSVCLSELELANKQYNELTSKYRDI-------- 980
Cdd:TIGR02168 578 LDSIKGTEIQGNDREILKNIEGF-LGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVtldgdlvr 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 981 ---------LQKDNMLVQRTSNLEHLECENASLKEQVESINKELEITKEKLHTIEQAWEQETRLGNEssmdkakksitns 1051
Cdd:TIGR02168 657 pggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE------------- 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1052 divsISKKITMLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFAELTKiNLDAQKVEQMLRDELAGSVSKAV 1131
Cdd:TIGR02168 724 ----LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE-ELAEAEAEIEELEAQIEQLKEEL 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1132 SdADRQRILELEKNEMELKVEVSKLRE-----ISDIARRQVEILNAQQQSREK--EVESLRMQLLDYQAQSDE--KALIA 1202
Cdd:TIGR02168 799 K-ALREALDELRAELTLLNEEAANLRErleslERRIAATERRLEDLEEQIEELseDIESLAAEIEELEELIEEleSELEA 877
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622846131 1203 KLHQHNvSLQLSEATALGKLESITSKLQKMEAYNMRLEQKLDEKEQAL--YYARLEGrnrakhLRQTIQSLRRQFS 1276
Cdd:TIGR02168 878 LLNERA-SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLaqLELRLEG------LEVRIDNLQERLS 946
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1218-2001 |
2.31e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 2.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1218 ALGKLESITSKLQKMEAYNMRLEQKLD----EKEQALYYARLEGRNRAKHLRQTIQSLRRQFSGALPLAQQEKFSKTMI- 1292
Cdd:TIGR02168 177 TERKLERTRENLDRLEDILNELERQLKslerQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELe 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1293 QLQNDKLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTLKDTKGAQKV--INWHMKIEELRLQELKLNRELVKDK 1370
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRErlANLERQLEELEAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1371 EEIKYLNNIISEYERTISSLEEEIVQQNKFHEERQLAWDQREVDLERQLDIFD-------RQQNEILNAAQKFEEATGSI 1443
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAqlelqiaSLNNEIERLEARLERLEDRR 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1444 PD--------PSLPLPNQLEMALRKIKENIRIILETRATCRSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATAE 1515
Cdd:TIGR02168 417 ERlqqeieelLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1516 REkliaelGRKEMEPKSHHTLKIAHQTIANMQARLNQKEEVLKKYQHLLEKAREEQRE-IVKKHEEDLhilhhKLELQAD 1594
Cdd:TIGR02168 497 LQ------ENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQaVVVENLNAA-----KKAIAFL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1595 SSLNKFKQTAWDLMKQSPTPVPTNKHFIR---------LAEMEQTVAEQDDSLSSLLIKL-------------------- 1645
Cdd:TIGR02168 566 KQNELGRVTFLPLDSIKGTEIQGNDREILkniegflgvAKDLVKFDPKLRKALSYLLGGVlvvddldnalelakklrpgy 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1646 ---------------------KKVSQDLERQREITEL--KVKEFENiklwLQENHEDEVKKVKAEVEDLRYLLDQSQKES 1702
Cdd:TIGR02168 646 rivtldgdlvrpggvitggsaKTNSSILERRREIEELeeKIEELEE----KIAELEKALAELRKELEELEEELEQLRKEL 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1703 QCLKSELQAQKEansraptttmrnLVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAhlnvqqivd 1782
Cdd:TIGR02168 722 EELSRQISALRK------------DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA--------- 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1783 rhtrelKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKDEIDQENDELKRQIKRLTsgL 1862
Cdd:TIGR02168 781 ------EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS--E 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1863 QGKPLTDNkqslIEELQRKIKKLESQLEGKVDEVDLKPMKEKNAKEELIrweegkKWQAKIEGIRNKLKEKEGEVCTLTK 1942
Cdd:TIGR02168 853 DIESLAAE----IEELEELIEELESELEALLNERASLEEALALLRSELE------ELSEELRELESKRSELRRELEELRE 922
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622846131 1943 QLNTLKDLFAKADKEKLTLQRKLKTTGMTVDQVLGVRALESEKELEELKKRNLDLENDI 2001
Cdd:TIGR02168 923 KLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
87-563 |
5.94e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 65.14 E-value: 5.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 87 LKTKVMKLENELEMAQQSAGGRDTRFLR---DEIRQLAKQLEQKDREL-EDIEKELEKEKKVNEQLALRNEEAENENSKL 162
Cdd:pfam15921 236 LKGRIFPVEDQLEALKSESQNKIELLLQqhqDRIEQLISEHEVEITGLtEKASSARSQANSIQSQLEIIQEQARNQNSMY 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 163 RRENKRLKKKNEQLCQDIIDYQKQIDSQKETLlsrrgedsdyRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKN 242
Cdd:pfam15921 316 MRQLSDLESTVSQLRSELREAKRMYEDKIEEL----------EKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 243 LEESVQEMEKMTDEYNRMKAIVHQTDNVIDQLKKENDHYRLQVQELTDLLKAKNEE----DDPIMVAVNAKVEEWKLIlS 318
Cdd:pfam15921 386 LHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSEcqgqMERQMAAIQGKNESLEKV-S 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 319 SKDDEIIEYQQMLHNLREKL--KNAQLDADKSNVMALQQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNElqrnk 396
Cdd:pfam15921 465 SLTAQLESTKEMLRKVVEELtaKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE----- 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 397 gastlsqQTHYMKIQSTLDILKEKTKEAERTAELAeadarekdKELVETLKRLkdyeSGVYGLEDAVVEIKNCKNQIKIR 476
Cdd:pfam15921 540 -------GDHLRNVQTECEALKLQMAEKDKVIEIL--------RQQIENMTQL----VGQHGRTAGAMQVEKAQLEKEIN 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 477 DREIEIltKEINKLELKINDFLDENEALRERVGLEPKTMIDL--TEFRNSKRLKQQQYRAENQI--LLKEIESLEEERLD 552
Cdd:pfam15921 601 DRRLEL--QEFKILKDKKDAKIRELEARVSDLELEKVKLVNAgsERLRAVKDIKQERDQLLNEVktSRNELNSLSEDYEV 678
|
490
....*....|.
gi 1622846131 553 LKKKIRQMAQE 563
Cdd:pfam15921 679 LKRNFRNKSEE 689
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1463-2429 |
1.73e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 1.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1463 ENIRIILETRATCRSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPaTAEREKLIAELGRKEMEPKSHHTLKIAHQT 1542
Cdd:TIGR02168 155 EERRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILNELERQLK-SLERQAEKAERYKELKAELRELELALLVLR 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1543 IANMQARLNQKEEVLKKYQHLLEKAREEQREIVKKHEEdlhilhHKLELQADSSLNKFKQTAWDLMKQsptpvptnkhfi 1622
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEE------LRLEVSELEEEIEELQKELYALAN------------ 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1623 RLAEMEQTVAEQDDSLSSLLIKLKKVS---QDLERQREITELKVKEFENIKLWLQENHEDEVKKVKAEvedlrylldqsQ 1699
Cdd:TIGR02168 296 EISRLEQQKQILRERLANLERQLEELEaqlEELESKLDELAEELAELEEKLEELKEELESLEAELEEL-----------E 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1700 KESQCLKSELQAQKEAnsraptttmrnlVERLKSQLALKEKQQKALSRALLELRAEMTAAaEERIISATSQKEAHLNVQQ 1779
Cdd:TIGR02168 365 AELEELESRLEELEEQ------------LETLRSKVAQLELQIASLNNEIERLEARLERL-EDRRERLQQEIEELLKKLE 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1780 IVDRHtrELKTQVEDLNENLLKLKEALktsknrensltdnlNDLNNELQKKQKAYNKILREKDEIDQENDELKRQIKRLT 1859
Cdd:TIGR02168 432 EAELK--ELQAELEELEEELEELQEEL--------------ERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE 495
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1860 SGLQgkpltdNKQSLIEELqRKIKKLESQLEGKVDEVdlkpmkeknakEELIRWEEGkkWQAKIE----GIRNKLkekeg 1935
Cdd:TIGR02168 496 RLQE------NLEGFSEGV-KALLKNQSGLSGILGVL-----------SELISVDEG--YEAAIEaalgGRLQAV----- 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1936 evctLTKQLNTLKDLFAkADKEKltlqRKLKTTGMTVDQVLGVRALESEKELEELKKRNLDLENDILYM--RAHQA---- 2009
Cdd:TIGR02168 551 ----VVENLNAAKKAIA-FLKQN----ELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFdpKLRKAlsyl 621
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2010 LPRDSVVEDLHLQNRyLQEKLHALEKQLSKDTY---SRPSISGiGSDDHCQREQELQKENLKLSSENIELKFQLEQANKD 2086
Cdd:TIGR02168 622 LGGVLVVDDLDNALE-LAKKLRPGYRIVTLDGDlvrPGGVITG-GSAKTNSSILERRREIEELEEKIEELEEKIAELEKA 699
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2087 LPRLKNQVRDLKEMCEFLKKEKAEVERKLGHVRGS-GRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKASGILTSEKMA 2165
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDlARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2166 nIEQENEKLKAELEKLKAhfghqlsmhyesktkgtekiiaENERLRKELKKETDAAEKLRIAKNNLEILNEKMTVQLEET 2245
Cdd:TIGR02168 780 -AEAEIEELEAQIEQLKE----------------------ELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2246 GKRLQFAESRGPQLEGADSKSWKSIvvtrmyetklKELETDIAKKNQSITDLKQLVKEATEREQKVKKYTEDLEEQIKil 2325
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEI----------EELEELIEELESELEALLNERASLEEALALLRSELEELSEELR-- 904
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2326 khvpEGAETEQGLRQELQVLRLANSQLDKEKAELIHQIEANKDQ--SGAESTIPDADQLKEKVKDLETQLKmsdlekqhl 2403
Cdd:TIGR02168 905 ----ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlsEEYSLTLEEAEALENKIEDDEEEAR--------- 971
|
970 980
....*....|....*....|....*.
gi 1622846131 2404 kEEIKKLKKELENFDPSFFEEIEDLK 2429
Cdd:TIGR02168 972 -RRLKRLENKIKELGPVNLAAIEEYE 996
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1083-1858 |
3.43e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 3.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1083 HLRTSLKQMEERNFELETKFAELTKinldAQKVEQMLRDELAGSVSKavSDADRQRILELEKNEMELKVEVSKLREISDI 1162
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKE----AEEELEELTAELQELEEK--LEELRLEVSELEEEIEELQKELYALANEISR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1163 ARRQVEILNAQQQSREKEVESLRMQLLDYQAQSDEKALIAKlhqhnvSLQLSEATALGKLESITSKLQKMEAYNMRLEQK 1242
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA------ELEEKLEELKEELESLEAELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1243 LDEKEQALYYARlegrNRAKHLRQTIQSLRRQFsgalplaQQEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNMENKTLEM 1322
Cdd:TIGR02168 374 LEELEEQLETLR----SKVAQLELQIASLNNEI-------ERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAEL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1323 ELKLKGLEELISTLKDTkgAQKVINWHMKIEELRLQELKLNRELVKDKEEIKYLNNIISEYERTISSLEEEIVQQNKFHE 1402
Cdd:TIGR02168 443 EELEEELEELQEELERL--EEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSG 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1403 ERQLAWDQREVDLERQLDIF----DRQQNEILNAAQKFEEATGSIPDPSLPLPNQLEMAL---RKIKENIRIILETRATC 1475
Cdd:TIGR02168 521 ILGVLSELISVDEGYEAAIEaalgGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSikgTEIQGNDREILKNIEGF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1476 RSLEEKLKEKESALRLAEQNILSRDKVI------NELRLRLPA----------------------------TAEREKLIA 1521
Cdd:TIGR02168 601 LGVAKDLVKFDPKLRKALSYLLGGVLVVddldnaLELAKKLRPgyrivtldgdlvrpggvitggsaktnssILERRREIE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1522 ELGRK--EMEPKSHH------TLKIAHQTIANMQARLNQKEEVLKKYQHLLEKAREEQREIVKKHEEDLHILHHKLE--- 1590
Cdd:TIGR02168 681 ELEEKieELEEKIAElekalaELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTele 760
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1591 ------LQADSSLNKFKQTAWDLMKQSPTPVptNKHFIRLAEMEQTVAEQDDSLSSLLIKLKKVSQDLERQREITELKVK 1664
Cdd:TIGR02168 761 aeieelEERLEEAEEELAEAEAEIEELEAQI--EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATER 838
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1665 EFENIKLWLQENhEDEVKKVKAEVEDLRYLLDQSQKESQCLKSELQAQKEAnsraptttmrnlVERLKSQLALKEKQQKA 1744
Cdd:TIGR02168 839 RLEDLEEQIEEL-SEDIESLAAEIEELEELIEELESELEALLNERASLEEA------------LALLRSELEELSEELRE 905
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1745 LSRALLELRAEMTAAAEERIISATSQKEAHLNVQQIVDRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLN 1824
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELG 985
|
810 820 830 840
....*....|....*....|....*....|....*....|.
gi 1622846131 1825 N-------ELQKKQKAYNKILREKDEIDQENDELKRQIKRL 1858
Cdd:TIGR02168 986 PvnlaaieEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
968-1890 |
4.13e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 4.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 968 KQYNELTSKYRDiLQKDNMLVQRTSNLEHLEcenaSLKEQVESINKELEITKEKLHTIEQAWEqETRLgnESSMDKAKKS 1047
Cdd:TIGR02168 213 ERYKELKAELRE-LELALLVLRLEELREELE----ELQEELKEAEEELEELTAELQELEEKLE-ELRL--EVSELEEEIE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1048 ITNSDIVSISKKITMLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFAELTKINLDAQKVEQMLRDELagsv 1127
Cdd:TIGR02168 285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL---- 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1128 skavsDADRQRILELEKNEMELKVEVSKLREISDIARRQVEILNAQQQSREKEVESL---RMQLLDYQAQSDEKALIAKL 1204
Cdd:TIGR02168 361 -----EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLedrRERLQQEIEELLKKLEEAEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1205 HQHNVSLQLSEATalgkLESITSKLQKMEAYNMRLEQKLDEKEQALYYArlegRNRAKHLRQTIQSLRRqfsgalplaqq 1284
Cdd:TIGR02168 436 KELQAELEELEEE----LEELQEELERLEEALEELREELEEAEQALDAA----ERELAQLQARLDSLER----------- 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1285 ekfsktmiqlqndklkIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTlkdTKGAQKVInwhmkieELRLQELkLNR 1364
Cdd:TIGR02168 497 ----------------LQENLEGFSEGVKALLKNQSGLSGILGVLSELISV---DEGYEAAI-------EAALGGR-LQA 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1365 ELVKDKEEIKylnniiseyeRTISSLEEEIVQQNKFHEERQLAWDQREVDLERQL---DIFDRQQNEILNAAQKFEEATG 1441
Cdd:TIGR02168 550 VVVENLNAAK----------KAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILkniEGFLGVAKDLVKFDPKLRKALS 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1442 SIPDPSLPLPNqLEMALRKIKEniriiLETRATCRSLEEKLKEKESAL----RLAEQNILSRDKVINELRlrlpataere 1517
Cdd:TIGR02168 620 YLLGGVLVVDD-LDNALELAKK-----LRPGYRIVTLDGDLVRPGGVItggsAKTNSSILERRREIEELE---------- 683
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1518 kliaelgrkemepkshhtlkiahQTIANMQARLNQKEEVLKKYQHLLEkAREEQREIVKKHEEDLHILHHKLELQadssl 1597
Cdd:TIGR02168 684 -----------------------EKIEELEEKIAELEKALAELRKELE-ELEEELEQLRKELEELSRQISALRKD----- 734
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1598 nkfkqtawdlmkqsptpvptnkhFIRLAEMEQTVAEQDDSLSSLLIKLKKVSQDLERQREITELKVKEfeniklwlqenH 1677
Cdd:TIGR02168 735 -----------------------LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE-----------A 780
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1678 EDEVKKVKAEVEDLRYLLDQSQKESQCLKSELQAQKEANSRAptttmRNLVERLKSQLALKEKQQKALSRALLELRAEMT 1757
Cdd:TIGR02168 781 EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL-----RERLESLERRIAATERRLEDLEEQIEELSEDIE 855
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1758 AAAEERIISATSQKEAHLNVQQIVDrhtrelktQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKI 1837
Cdd:TIGR02168 856 SLAAEIEELEELIEELESELEALLN--------ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*
gi 1622846131 1838 LREKDEIDQENDELKRQIKRLTSGLQG--KPLTDNKQSLIEELQRKIKKLESQLE 1890
Cdd:TIGR02168 928 ELRLEGLEVRIDNLQERLSEEYSLTLEeaEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
331-1122 |
4.65e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 4.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 331 LHNLREKLKNAQLDADKSNVMALQQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQRnkgastLSQQTHymKI 410
Cdd:TIGR02168 215 YKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE------LEEEIE--EL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 411 QSTLDILKEKTKEAERTAELAEADAREKDKELVETLKRLKDYESGVYGLEDAVVEIKNcknqikirdrEIEILTKEINKL 490
Cdd:TIGR02168 287 QKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE----------KLEELKEELESL 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 491 ELKINDFLDENEALRERVGLEPKTMIDLTEFRNSKRLKQQQYRAENQILLKEIESLEE--ERLDLKKKIRQMAQERGKRS 568
Cdd:TIGR02168 357 EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDrrERLQQEIEELLKKLEEAELK 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 569 ATSG-LTTEDLNLTENISQGDRISERKldllslknmSEAKSKNEFLSRELIEKERDLERSRTVIAkfqnKLKELVEENKQ 647
Cdd:TIGR02168 437 ELQAeLEELEEELEELQEELERLEEAL---------EELREELEEAEQALDAAERELAQLQARLD----SLERLQENLEG 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 648 LEEGMKEILQAikemQKDPDVNGGETSLIIPSLERLVNAIEsknaegifdasLHLKAQVDQLTGRNEelrqelrESRKEA 727
Cdd:TIGR02168 504 FSEGVKALLKN----QSGLSGILGVLSELISVDEGYEAAIE-----------AALGGRLQAVVVENL-------NAAKKA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 728 INYsqqlakanlkidhleketslLRQSEGSNVVFKGIDL--PDGIAPSSASIINSQNEYLiHLLQELENKEKKLK----- 800
Cdd:TIGR02168 562 IAF--------------------LKQNELGRVTFLPLDSikGTEIQGNDREILKNIEGFL-GVAKDLVKFDPKLRkalsy 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 801 ---------NLEDSLED---YNRKFAVIRHQQSLLYKEYLSEKDTWKT---------ESKTIKEEKRKLEDQIQQDAIKV 859
Cdd:TIGR02168 621 llggvlvvdDLDNALELakkLRPGYRIVTLDGDLVRPGGVITGGSAKTnssilerrrEIEELEEKIEELEEKIAELEKAL 700
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 860 KEYNNLLNALQMDSDEMKKILAENSRKITVLQVNEKSLIRQYTILVELERQLRKENEKQKNELLSMEAEVCEKLGCLQRF 939
Cdd:TIGR02168 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 940 KEmaifKIAALQKVVDN-----SVCLSELELANKQYNELTSKYRDILQKDNMLVQRTS----NLEHLECENASLKEQVES 1010
Cdd:TIGR02168 781 EA----EIEELEAQIEQlkeelKALREALDELRAELTLLNEEAANLRERLESLERRIAaterRLEDLEEQIEELSEDIES 856
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1011 INKELEITKEKLHTIEqawEQETRLGNESSMDKAKKSITNSDIVSISKKITMLEMKELNERQRAEHCQKMYEHLRTSLKQ 1090
Cdd:TIGR02168 857 LAAEIEELEELIEELE---SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG 933
|
810 820 830
....*....|....*....|....*....|..
gi 1622846131 1091 MEERNFELETKFAELTKINLDAQKVEQMLRDE 1122
Cdd:TIGR02168 934 LEVRIDNLQERLSEEYSLTLEEAEALENKIED 965
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1641-1934 |
5.04e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 5.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1641 LLIKLKKVSQDLERQREITELKVKEFENIKLWLQEnHEDEVKKVKAEVEDLRYLLDQSQKESQCLKSELQaqKEANSRAP 1720
Cdd:COG1196 230 LLLKLRELEAELEELEAELEELEAELEELEAELAE-LEAELEELRLELEELELELEEAQAEEYELLAELA--RLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1721 TTTMRN----LVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAhlnvQQIVDRHTRELKTQVEDLN 1796
Cdd:COG1196 307 LEERRReleeRLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA----EEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1797 ENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKDEIDQENDELKRQIKRLTSGLQGKpltDNKQSLIE 1876
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE---AELEEEEE 459
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622846131 1877 ELQRKIKKLESQLEGKVDEV-DLKPMKEKNAKEELIRWEEGKKWQAKIEGIRNKLKEKE 1934
Cdd:COG1196 460 ALLELLAELLEEAALLEAALaELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1348-1932 |
1.44e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 1.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1348 WHMKIEELRLQELKLNRELVKDKEEIKYLNNIISEYERTISSLEEEIVQQNKFHEERQLAWDQREVDLERQLDIFDRQQN 1427
Cdd:COG1196 230 LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1428 EILNAAQKFEEATGSIPDpslpLPNQLEMALRKIKENIRIILETRATCRSLEEKLKEKESALRLAEQNILSRDKVINELR 1507
Cdd:COG1196 310 RRRELEERLEELEEELAE----LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1508 LRLpATAEREKLIAELGRKEMEpkshHTLKIAHQTIANMQARLNQKEEVLKKYQHLLEKAREEQREIVKKHEEDLHILHH 1587
Cdd:COG1196 386 EEL-LEALRAAAELAAQLEELE----EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1588 KLELQADsslnkfkqtawdlmkqsptpvpTNKHFIRLAEMEQTVAEQDDSLSSLLIKLKKVSQDLERQREITELKVKEFE 1667
Cdd:COG1196 461 LLELLAE----------------------LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1668 NIKLW--LQENHEDEVKKVKAEVEDL-----RYLLDQSQKESQCLKSELQAQKEANSRAPTTTMRNLVERLKSQLALKEK 1740
Cdd:COG1196 519 LRGLAgaVAVLIGVEAAYEAALEAALaaalqNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIG 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1741 QQKALSRALLELRAEMTAAAEERIISATSQKEAHLNVQQIVDRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNL 1820
Cdd:COG1196 599 AAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1821 NDLNNELQKKQKAYNKILREKDEIDQENDELKRQIKRLtsglqgkpltdnKQSLIEELQRKIKKLESQLEGKVDEVDLKP 1900
Cdd:COG1196 679 AELEELAERLAEEELELEEALLAEEEEERELAEAEEER------------LEEELEEEALEEQLEAEREELLEELLEEEE 746
|
570 580 590
....*....|....*....|....*....|..
gi 1622846131 1901 MKEKNAKEELIRWEEGKKWQAKIEGIRNKLKE 1932
Cdd:COG1196 747 LLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
21-662 |
4.57e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 4.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 21 QEELADNLLISLSKVEVNELKSEKQENVIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFEnQLKTKVMKLENELEM 100
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE-EAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 101 AQQsaggrDTRFLRDEIRQLAKQLEQKDRELEDIEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLCQDI 180
Cdd:COG1196 300 LEQ-----DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 181 IDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRM 260
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 261 KAIVHQTDNVIDQLKKENDHYRLQVQELTDLL---KAKNEEDDPIMVAVNAKVEEWKLILSSKDDEIIEyqQMLHNLREK 337
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELaeaAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA--GAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 338 LKNAQLDADKSNVMALQQGIQERDSQIKMLteqveqytkemekntfiIEDLKnelQRNKGASTLSQQThymkiqstlDIL 417
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAA-----------------IEYLK---AAKAGRATFLPLD---------KIR 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 418 KEKTKEAERTAELAEADAREKDKELVETLKRLKDYESGVYGLEDAVVEIKNCKNQIKIRDREIEILTKEInklelkindf 497
Cdd:COG1196 584 ARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEG---------- 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 498 ldenEALRERVGLEPKTMIDLTEFRNSKRLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQERGKRSATSGLTTED 577
Cdd:COG1196 654 ----EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQ 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 578 LNLTENISQGDRISERKLDLLSLKNMSEAKSKNEFLSRELIEKERDLERSRTV----IAKF---QNKLKELVEENKQLEE 650
Cdd:COG1196 730 LEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPVnllaIEEYeelEERYDFLSEQREDLEE 809
|
650
....*....|..
gi 1622846131 651 GMKEILQAIKEM 662
Cdd:COG1196 810 ARETLEEAIEEI 821
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1228-1890 |
8.46e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 8.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1228 KLQKMEAYNMRLEQKLDEKEQALyyARLEgRNRAKHLR-QTIQSLRRQFSGALPLAQQEKFSKTMIQLQNDKLKIMQEMK 1306
Cdd:COG1196 180 KLEATEENLERLEDILGELERQL--EPLE-RQAEKAERyRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1307 NSQQEHRNMENKTLEMELKLKGLEElistlkdtkgaqkvinwhmKIEELRLQELKLNRELVKDKEEIKYLNNIISEYERT 1386
Cdd:COG1196 257 ELEAELAELEAELEELRLELEELEL-------------------ELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1387 ISSLEEEIVQQnkfhEERQLAWDQREVDLERQLDIFDRQQNEILNAAQKFEEatgsipdpslplpnqlemALRKIKENIR 1466
Cdd:COG1196 318 LEELEEELAEL----EEELEELEEELEELEEELEEAEEELEEAEAELAEAEE------------------ALLEAEAELA 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1467 IILETRATCRSLEEKLKEKESALRLAEQNILSRDKVINELRLRLpATAEREKLIAELGRKEMEPKSHHTLKIAHQTIANM 1546
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL-EEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1547 QARLNQKEEVLKKYQHLLEKAREEQREIVKKHEEDLHILHHKLELQADSSLnkfKQTAWDLMKQSPTPVPTNKHFIRLAE 1626
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG---FLEGVKAALLLAGLRGLAGAVAVLIG 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1627 MEQTVAEQDDSLSSLLIKLKKVSQDLERQREITELKVKEF---ENIKLWLQENHEDEVKKVKAEVEDLRYLLDQSQKESQ 1703
Cdd:COG1196 532 VEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgraTFLPLDKIRARAALAAALARGAIGAAVDLVASDLREA 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1704 CLKSELQAQKEANSRAPTTTMRNLVERLKSQLAlkEKQQKALSRALLELRAEMTAAAEERIISATSQKEAHLnvQQIVDR 1783
Cdd:COG1196 612 DARYYVLGDTLLGRTLVAARLEAALRRAVTLAG--RLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL--EELAER 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1784 HTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKDEIDQENDELKRQIKRltsglq 1863
Cdd:COG1196 688 LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD------ 761
|
650 660
....*....|....*....|....*..
gi 1622846131 1864 gkpltdnkqslIEELQRKIKKLESQLE 1890
Cdd:COG1196 762 -----------LEELERELERLEREIE 777
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1663-2452 |
1.10e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.38 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1663 VKEFENIKLWLQENHEDEVKKVKAE--VEDLRYLLDQSQKESQCLKSELQAQKEANSRAPTTTMRNLVERLKSQLALKEK 1740
Cdd:PTZ00121 1199 ARKAEAARKAEEERKAEEARKAEDAkkAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR 1278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1741 QQKALSRALLELRAEMTAAAEERIISATSQKEAHlnvqqiVDRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNL 1820
Cdd:PTZ00121 1279 KADELKKAEEKKKADEAKKAEEKKKADEAKKKAE------EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEA 1352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1821 NDLNNELQKKQKAYNKILREKDEIDQENDELKRQIKRLTSGLQGKPLTDNKQSLIEELQRKikkleSQLEGKVDEVDLKP 1900
Cdd:PTZ00121 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA-----AAAKKKADEAKKKA 1427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1901 MKEKNAKEELIRWEEGKKwqakIEGIRNKLKEKEgevctltkqlnTLKDLFAKADKEKLTLQRKLKTTGMTVDQVLGVRA 1980
Cdd:PTZ00121 1428 EEKKKADEAKKKAEEAKK----ADEAKKKAEEAK-----------KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKA 1492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1981 LESEKELEELKKRNLDLENDILYMRAHQALPRDSVvedlhlqnRYLQEKLHALEKQLSKDtysrpsisgIGSDDHCQREQ 2060
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEA--------KKAEEAKKADEAKKAEE---------KKKADELKKAE 1555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2061 ELQKENLKLSSEniELKFQLEQANKDLPRL-------KNQVRDLKEMCEFLKKEKAEVERKLGHVRGSGRSGKTIPELEK 2133
Cdd:PTZ00121 1556 ELKKAEEKKKAE--EAKKAEEDKNMALRKAeeakkaeEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK 1633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2134 TIGLMKKVVEKVQRENEQLKKAsgiltsEKMANIEQENEKLKAELEKLKAhfgHQLSMHYESKTKGTEKIIAEN------ 2207
Cdd:PTZ00121 1634 KVEQLKKKEAEEKKKAEELKKA------EEENKIKAAEEAKKAEEDKKKA---EEAKKAEEDEKKAAEALKKEAeeakka 1704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2208 ERLRKELKKETDAAEKLRIAKNNLEILNEKMTVQLEETGKRLQFAESRgpqlEGADSKswksivVTRMYETKLKELETDI 2287
Cdd:PTZ00121 1705 EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD----EEEKKK------IAHLKKEEEKKAEEIR 1774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2288 AKKNQSITDlkQLVKEATEREQKVKKYTEDLEEQIKILK--------HVPEGAETEQGLRQElqVLRLANSQLDKEKAEL 2359
Cdd:PTZ00121 1775 KEKEAVIEE--ELDEEDEKRRMEVDKKIKDIFDNFANIIeggkegnlVINDSKEMEDSAIKE--VADSKNMQLEEADAFE 1850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2360 IHQIEANKDQSGAESTIPDADQLKEKVKDLETQLKMSDLEKQhLKEEIKKLKKELENFDPSFFEEIEDlKYNYKEEVKKN 2439
Cdd:PTZ00121 1851 KHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEK-IDKDDIEREIPNNNMAGKNNDIIDD-KLDKDEYIKRD 1928
|
810
....*....|....
gi 1622846131 2440 I-LLEEKVKKLSEQ 2452
Cdd:PTZ00121 1929 AeETREEIIKISKK 1942
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
230-976 |
1.26e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 1.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 230 EKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKAIVHQTDNVIDQLKKENDHYRLQVQELTDLLKAKNEEDdpiMVAVNAK 309
Cdd:TIGR02169 219 EKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEE---QLRVKEK 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 310 VEEWKLILSSKDDEIIEYQQMLHNLREKLKNAQLDADKSnvmalqqgiqerDSQIKMLTEQVEQYTKEMEKNTFIIEDLK 389
Cdd:TIGR02169 296 IGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKL------------LAEIEELEREIEEERKRRDKLTEEYAELK 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 390 NELqrnkgastlsqqthymkiqstldilkektkeaertaELAEADAREKDKELVETLKRLKDYESGVYGLEDAVVEIKNC 469
Cdd:TIGR02169 364 EEL------------------------------------EDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 470 KNQIKIRDREIEI----LTKEINKLELKINDFLDENEALRERVGLEPKTMIDLTEFRNSKRLKQQQYRAENQILLKEIES 545
Cdd:TIGR02169 408 LDRLQEELQRLSEeladLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 546 LEEERLDLKKKIRQMAQERGKRSATSGLTTEDLN-LTENISQGDRISER-----------KLDLLSLKNMSEAKSKNEFL 613
Cdd:TIGR02169 488 LQRELAEAEAQARASEERVRGGRAVEEVLKASIQgVHGTVAQLGSVGERyataievaagnRLNNVVVEDDAVAKEAIELL 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 614 SRELI--------EKERDLERSRTVIAK--FQNKLKELVEENKQLEEGMKEILQ---AIKEMQKDPDVNGG------ETS 674
Cdd:TIGR02169 568 KRRKAgratflplNKMRDERRDLSILSEdgVIGFAVDLVEFDPKYEPAFKYVFGdtlVVEDIEAARRLMGKyrmvtlEGE 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 675 LIIPSLERLVNAIESKNAEGI----FDASLHLKAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSL 750
Cdd:TIGR02169 648 LFEKSGAMTGGSRAPRGGILFsrsePAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 751 LRQSEGSNvvfkgidlpdgiapssASIINSQNEYLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLYKEYLSE 830
Cdd:TIGR02169 728 LEQEEEKL----------------KERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHS 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 831 KdtwkteSKTIKEEKRKLEDQIQQDAIKVKEYNNLLNALQMDSDEMKKILAENSRKITVLQVNEKSLIRQYTILVELERQ 910
Cdd:TIGR02169 792 R------IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEE 865
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622846131 911 LRKENEKQKNELLSMEaevcEKLGCLQRFKEMAIFKIAALQKVVDNSVclSELELANKQYNELTSK 976
Cdd:TIGR02169 866 LEEELEELEAALRDLE----SRLGDLKKERDELEAQLRELERKIEELE--AQIEKKRKRLSELKAK 925
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
113-693 |
3.28e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.72 E-value: 3.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 113 LRDEIRQLAKQLEQKDRELEDIEKELEKEKK----VNEQLALRNEEAENENSKLRRENKRLKKKNEqlcqDIIDYQKQID 188
Cdd:TIGR04523 38 LEKKLKTIKNELKNKEKELKNLDKNLNKDEEkinnSNNKIKILEQQIKDLNDKLKKNKDKINKLNS----DLSKINSEIK 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 189 SQKETLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKAIVHQTD 268
Cdd:TIGR04523 114 NDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 269 NVIDQ-------LKKENDHYRLQVQELTDLLKAKNEEDDPImVAVNAKVEEWKLILSSKDDEIIEYQQMLHNLREKLKNA 341
Cdd:TIGR04523 194 NKLLKlelllsnLKKKIQKNKSLESQISELKKQNNQLKDNI-EKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEK 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 342 QLDADKSNvmalqQGIQERDSQIKMLTEQVEQYTKEMEKNtfIIEDLKNELQRNKGASTLSqQTHYMKIQSTLDILKEKT 421
Cdd:TIGR04523 273 QKELEQNN-----KKIKELEKQLNQLKSEISDLNNQKEQD--WNKELKSELKNQEKKLEEI-QNQISQNNKIISQLNEQI 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 422 KEAERTAELAEADAREKDKELVETLKRL----KDYESGVYGLEDAVVEIKNCKNQIKIRDREIEILTKEINKLELKINDF 497
Cdd:TIGR04523 345 SQLKKELTNSESENSEKQRELEEKQNEIeklkKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELL 424
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 498 LDENEALRERVGLEPKTMIDLTEFRNSKRLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQE-RGKRSATSGLTTE 576
Cdd:TIGR04523 425 EKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKElKSKEKELKKLNEE 504
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 577 DLNLTENISQ-GDRISERKLDLLSLKN-MSEAKSKNEFLSRELIEKERDLERS--RTVIAKFQNKLKELVEENKQLEEGM 652
Cdd:TIGR04523 505 KKELEEKVKDlTKKISSLKEKIEKLESeKKEKESKISDLEDELNKDDFELKKEnlEKEIDEKNKEIEELKQTQKSLKKKQ 584
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1622846131 653 KEILQAIKEMQKDPDVNGGETSLIIPSLERLVNAIESKNAE 693
Cdd:TIGR04523 585 EEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE 625
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
968-1273 |
3.71e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 3.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 968 KQYNELTSKYRDILQKdnmlvQRTSNLEHLECENASLKEQVESINKELEITKEKLHTIEQAWEQE----TRLGNESSMDK 1043
Cdd:COG1196 213 ERYRELKEELKELEAE-----LLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELrlelEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1044 AKKSITNSDIVSISKKITMLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFAELTKINLDAQKVEQMLRDEL 1123
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1124 AGSVSKAVS-----DADRQRILELEKNEMELKVEVSKL-REISDIARRQVEILNAQQQSREKEVESLRMQLLDYQAQSDE 1197
Cdd:COG1196 368 LEAEAELAEaeeelEELAEELLEALRAAAELAAQLEELeEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622846131 1198 KALIAKLHQHNVSLQLSEATALGKLESITSKLQKMEAYNMRLEQKLDEKEQALyyARLEGRNRAKHLRQTIQSLRR 1273
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE--ADYEGFLEGVKAALLLAGLRG 521
|
|
| DUF1633 |
pfam07794 |
Protein of unknown function (DUF1633); This family contains sequences derived from a group of ... |
1766-1942 |
4.01e-06 |
|
Protein of unknown function (DUF1633); This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana. These sequences are highly similar and the region concerned is about 100 residues long.
Pssm-ID: 116408 [Multi-domain] Cd Length: 698 Bit Score: 52.20 E-value: 4.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1766 SATSQKEAHLNVQQivdrhTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQ----KKQKAYNKILRek 1841
Cdd:pfam07794 458 RAIREEDPHLGADQ-----DREVRFGAEGIVPGIERLKIELSTSKDLEKGYAEKIGFMEMEFGgleaDKQMARNQIHR-- 530
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1842 deIDQENDELKRQIKRLTSGLQG--KPLTDNKQSLIEELQRKI---------KKLESQLEGKVDEVDLK-PMKEKNAKEE 1909
Cdd:pfam07794 531 --LEEKKDELSKKVLDLTSIAQGakKAVHDAKVELAAAYLKLLagikdkwvaKKEFTVLEGQAAEVESNlALIDQITKAA 608
|
170 180 190
....*....|....*....|....*....|...
gi 1622846131 1910 LIRWEEGKKWQAKIEGIRNKLKEKEGEVCTLTK 1942
Cdd:pfam07794 609 IDLTLEKPRFQAEIDDLEARCKLKEVSDFTLSK 641
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
93-854 |
6.38e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 6.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 93 KLENELEMAQQSAGGRDTRFLRDEIRQLAKQLEQKDRELEDIEkelekekkvnEQLALRNEEAENENSKLRRENKRLKKK 172
Cdd:TIGR02169 215 ALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLT----------EEISELEKRLEEIEQLLEELNKKIKDL 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 173 NEqlcqdiiDYQKQIdsqKETLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEK 252
Cdd:TIGR02169 285 GE-------EEQLRV---KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDK 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 253 MTDEYNRMKAIVHQTDNVIDQLKKENDHYRLQVQELTDLLKAKNEEDDPImvavnakveewKLILSSKDDEIIEYQQMLH 332
Cdd:TIGR02169 355 LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINEL-----------KRELDRLQEELQRLSEELA 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 333 NLREKLKnaqldadksnvmALQQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQRnkgastlsqqthymkIQS 412
Cdd:TIGR02169 424 DLNAAIA------------GIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD---------------LKE 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 413 TLDILKEKTKEAERTAELAEADAR---EKDKELVETLKRLKDYESGVYGLEDAVVEIK------------NCKNQIKIRD 477
Cdd:TIGR02169 477 EYDRVEKELSKLQRELAEAEAQARaseERVRGGRAVEEVLKASIQGVHGTVAQLGSVGeryataievaagNRLNNVVVED 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 478 -----REIEILTKEinklELKINDFLDENEALRERVGLEPKTM-------IDLTEFrnskrlkQQQYRAENQILLKE--- 542
Cdd:TIGR02169 557 davakEAIELLKRR----KAGRATFLPLNKMRDERRDLSILSEdgvigfaVDLVEF-------DPKYEPAFKYVFGDtlv 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 543 IESLEEERlDLKKKIRQMAQE-----------RGKRSATSGLTTEDLNLTENISQGDRISERKLDLLSLKN--------M 603
Cdd:TIGR02169 626 VEDIEAAR-RLMGKYRMVTLEgelfeksgamtGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSelrrienrL 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 604 SEAKSKNEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGmkeiLQAIKEMQKDPDVNGGETSLIIPSLERL 683
Cdd:TIGR02169 705 DELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE----IENVKSELKELEARIEELEEDLHKLEEA 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 684 VNAIESKNAEgifdaslhlkAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETsllrqsegSNVVFKG 763
Cdd:TIGR02169 781 LNDLEARLSH----------SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI--------QELQEQR 842
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 764 IDLPDGIAPSSASIINSQNEyLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKDTWKTESKTIKE 843
Cdd:TIGR02169 843 IDLKEQIKSIEKEIENLNGK-KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE 921
|
810
....*....|.
gi 1622846131 844 EKRKLEDQIQQ 854
Cdd:TIGR02169 922 LKAKLEALEEE 932
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
237-564 |
7.48e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 7.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 237 QEMRKNLEESVQEMEKMTDEYNRMKAIVHQTDNVIDQLKKENDHYRLQVQELTDLLKAKNEEDDPIMVAVNAKVEEWKLI 316
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 317 LSSKDD---EIIEYQQMLHNLREKLKNAQLDADKSNVMALQQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQ 393
Cdd:TIGR02169 757 KSELKEleaRIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 394 rnkgastlsqqthymKIQSTLDILKEKTKEAERTAELAEADAREKDKELVETLKRLKDYESGVYGLEDavvEIKNCKNQI 473
Cdd:TIGR02169 837 ---------------ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKK---ERDELEAQL 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 474 KIRDREIEILTKEINKLELKINDFLDENEALRERVGL----------EPKTMIDLTEFRNSKRLKQQQYRAENQILLKEI 543
Cdd:TIGR02169 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEiedpkgedeeIPEEELSLEDVQAELQRVEEEIRALEPVNMLAI 978
|
330 340
....*....|....*....|....
gi 1622846131 544 ESLEEE---RLDLKKKIRQMAQER 564
Cdd:TIGR02169 979 QEYEEVlkrLDELKEKRAKLEEER 1002
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1585-1863 |
7.79e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 7.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1585 LHHKLELQADSSLNKFKQTawdlmkQSPTPVPTNKHFIRlAEM--EQTVAEQDDSLSSLLIKLKKVSQDLERQREitelK 1662
Cdd:COG4913 182 LRRRLGIGSEKALRLLHKT------QSFKPIGDLDDFVR-EYMleEPDTFEAADALVEHFDDLERAHEALEDARE----Q 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1663 VKEFENIklwlqENHEDEVKKVKAEVEDLRYLLDQSQKESQCLKSELQAQKEANSRAptttmrnLVERLKSQLALKEKQQ 1742
Cdd:COG4913 251 IELLEPI-----RELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRA-------ELARLEAELERLEARL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1743 KALSRALLELRAEMT-------AAAEERIISATSQKEAHLNVQQIVDRHTRELKTQV----EDLNENLLKLKEALKTSKN 1811
Cdd:COG4913 319 DALREELDELEAQIRgnggdrlEQLEREIERLERELEERERRRARLEALLAALGLPLpasaEEFAALRAEAAALLEALEE 398
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1622846131 1812 RENSLTDNLNDLNNELQKKQkaynkilREKDEIDQENDELKRQIKRLTSGLQ 1863
Cdd:COG4913 399 ELEALEEALAEAEAALRDLR-------RELRELEAEIASLERRKSNIPARLL 443
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
111-683 |
7.87e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 7.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 111 RFLRDEIRQLAKQL---------EQKDRELEDIEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQ---LCQ 178
Cdd:COG1196 216 RELKEELKELEAELlllklreleAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEeyeLLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 179 DIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEyn 258
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE-- 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 259 rmkaivhqtdnVIDQLKKENDHYRLQVQELTDLLKAKNEEddpimvavnakveewklilsskdDEIIEYQQMLHNLREKL 338
Cdd:COG1196 374 -----------LAEAEEELEELAEELLEALRAAAELAAQL-----------------------EELEEAEEALLERLERL 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 339 KNAQLDADKSNVMALQQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQRNKGASTLSQQTHymKIQSTLDILK 418
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA--EAAARLLLLL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 419 EKTKEAERTAELAEADAREKDKELVETLKRLKDYESGVYGLEDAVVEIKNCKNQIKIRDREIEILTKEINKLELKINDFL 498
Cdd:COG1196 498 EAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFL 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 499 DENEALRERVGLEPKTMIDLTEFRNSKRLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQERGKRSATSGLTTEDL 578
Cdd:COG1196 578 PLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGS 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 579 NLTENISQGDRISERKLDLLSLKNMSEAKSKNEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQA 658
Cdd:COG1196 658 AGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737
|
570 580
....*....|....*....|....*
gi 1622846131 659 IKEMQKDPDVNGGETSLIIPSLERL 683
Cdd:COG1196 738 LEELLEEEELLEEEALEELPEPPDL 762
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1039-1806 |
2.18e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 2.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1039 SSMDKAKKSITNSDIVSISKKITMLEMKELNERQRAEHCQKMYEHLRTS--LKQMEERNFELETKFAELTKINLDAQKVE 1116
Cdd:PTZ00121 1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAeeARKAEDARKAEEARKAEDAKRVEIARKAE 1161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1117 QMLRDELAGSVSKAVSDADRQRILELEKNEMELKVEVSKLREISDIARRQVEILNAQQQSREKEVESLRMqlLDYQAQSD 1196
Cdd:PTZ00121 1162 DARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKK--AEEAKKDA 1239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1197 EKALIAKLHQHNVSLQLSEATALGKLESITSKLQKMEAYNMRLEQKLDEKEQALYYARLEGRNRAKHLRQTIQSLRRqfs 1276
Cdd:PTZ00121 1240 EEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKK--- 1316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1277 galplAQQEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTLKDTKGAQKVINWHMKIEELR 1356
Cdd:PTZ00121 1317 -----ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1357 LQElklnrELVKDKEEIKylnniiseyeRTISSLEEEIVQQNKFHEERQLAWDQREVDLERQLDIFDRQQNEilnAAQKF 1436
Cdd:PTZ00121 1392 KAD-----EAKKKAEEDK----------KKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE---AKKKA 1453
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1437 EEAtgsipdpslplpnqlemalrKIKENIRIILETRATCRSLEEKLKEKESALRLAEQNILSRDKViNELRlrlpaTAER 1516
Cdd:PTZ00121 1454 EEA--------------------KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKA-DEAK-----KAAE 1507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1517 EKLIAELGRKEMEPKSHHTLKIAHQTIANMQARLNQ---KEEVLKKYQHLLEKAREEQREIVKKHEEDLHILHHKLELQA 1593
Cdd:PTZ00121 1508 AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEekkKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK 1587
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1594 DSSlnkfKQTAWDLMKQSPTPVPTNKHFIRLAEMEQTVAEQddslsslliklkkVSQDLERQREITELKVKEFENIKLWL 1673
Cdd:PTZ00121 1588 KAE----EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE-------------LKKAEEEKKKVEQLKKKEAEEKKKAE 1650
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1674 QENHEDEVKKVKAEvEDLRYLLDQSQKESQCLKSELQAQKEANSRAPTTTMRNLVERLKSQLALKEKQQKALSRALLELR 1753
Cdd:PTZ00121 1651 ELKKAEEENKIKAA-EEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENK 1729
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 1622846131 1754 AEMTAAAEERiiSATSQKEAHLNVQQIVDRHTRELKTQVEDLNENLLKLKEAL 1806
Cdd:PTZ00121 1730 IKAEEAKKEA--EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
269-922 |
2.34e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 2.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 269 NVIDQLKKENDHYRLQVQELTDLLKAKNEEddpiMVAVNAKVEEWKLILSSKDDEIIEYQQMLHNLREKlknaqldadks 348
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAE----LQELEEKLEELRLEVSELEEEIEELQKELYALANE----------- 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 349 nvmalqqgIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQRNKGAstlsqqthymkiqstLDILKEKTKEAERTA 428
Cdd:TIGR02168 297 --------ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE---------------LAELEEKLEELKEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 429 ELAEADAREKDKELVETLKRLKDYESGVYGLEDAVVEIKNCKNQIKIrdrEIEILTKEINKLELKINDFLDENEALRERV 508
Cdd:TIGR02168 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN---EIERLEARLERLEDRRERLQQEIEELLKKL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 509 GLEPKTMI--DLTEFRNSKRLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQERGKRSATSGLTTEDLNLTENISQ 586
Cdd:TIGR02168 431 EEAELKELqaELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKA 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 587 ---------------GDRISERK-------------LDLLSLKNMSEAKSKNEFLSRELIEK--------------ERDL 624
Cdd:TIGR02168 511 llknqsglsgilgvlSELISVDEgyeaaieaalggrLQAVVVENLNAAKKAIAFLKQNELGRvtflpldsikgteiQGND 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 625 ERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKeMQKDPDvNGGETSLIIPSLERLV-------------------- 684
Cdd:TIGR02168 591 REILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVL-VVDDLD-NALELAKKLRPGYRIVtldgdlvrpggvitggsakt 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 685 -NAIESKNAEgifdaSLHLKAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSLLRQS-----EGSN 758
Cdd:TIGR02168 669 nSSILERRRE-----IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDlarleAEVE 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 759 VVFKGIDLPDGIAPSSASIINSQNEYLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLYKEY----------L 828
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtllneeaanlR 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 829 SEKDTWKTESKTIKEEKRKLEDQIQQDAIKVKEYNNLLNALQMDSDEMKKILAENSRKITVLQVNEKSLIRQYTILVELE 908
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
|
730
....*....|....
gi 1622846131 909 RQLRKENEKQKNEL 922
Cdd:TIGR02168 904 RELESKRSELRREL 917
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
75-373 |
2.82e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 2.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 75 KAGEEQAKFENQLKTKVMKLENELEMAQQSAGGRDTRF--LRDEIRQLAKQLEQKDRELEDIEKELEKEKKVNEQLALRN 152
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELeeLSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 153 EEAENENSKLRRENKRLKKKNEQLCQDIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKI 232
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 233 EVQNQEMRKNLEESVQEMEKMTDEYNRMKAIVHQTDNVIDQLKKENDHYRLQVQELTDLLKAKNEEddpiMVAVNAKVEE 312
Cdd:TIGR02168 844 EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESK----RSELRRELEE 919
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622846131 313 WKLILSSKDDEIIEYQQMLHNLREKLKNAQ---LDADKSNVMALQQGIQERDSQIKMLTEQVEQ 373
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNLQERLSEEYsltLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
609-928 |
4.92e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 4.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 609 KNEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDPDVNGGETSLIIPSLERLVNAIE 688
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 689 sknaegifdaslHLKAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSLLRQSegsnvvfkgidlpd 768
Cdd:COG1196 306 ------------RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE-------------- 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 769 giapssasiinsqneyLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLYKEYLSEkdtwKTESKTIKEEKRKL 848
Cdd:COG1196 360 ----------------LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL----EEAEEALLERLERL 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 849 EDQIQQDAIKVKEYNNLLNALQMDSDEMKKILAENSRKITVLQVNEKSLIRQYTILVELERQLRKENEKQKNELLSMEAE 928
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1374-2184 |
6.11e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.58 E-value: 6.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1374 KYLNNIISEYERTISSLEEEIVQQNKFHEERQLAWDQREVDLERQLDIFDRQQNEILNAAQKFEEATGSipdpslpLPNQ 1453
Cdd:pfam15921 74 EHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQED-------LRNQ 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1454 LEMALRKIKEniriiletrATCRSlEEKLKEKESALRLAEQNILSRDKVINELRLRLPATAE-------REKLIAELGRK 1526
Cdd:pfam15921 147 LQNTVHELEA---------AKCLK-EDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEasgkkiyEHDSMSTMHFR 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1527 EMEPKSHHTLKIAHQTIANMQARLNQKEEVLK--------KYQHLLEKAREEQREIVKKHEEDLHILHHKLElQADSSLN 1598
Cdd:pfam15921 217 SLGSAISKILRELDTEISYLKGRIFPVEDQLEalksesqnKIELLLQQHQDRIEQLISEHEVEITGLTEKAS-SARSQAN 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1599 KFKQTAWDLMKQSPTpvpTNKHFIR-LAEMEQTVAEqddsLSSLLIKLKKVSQDlerqrEITEL-KVKEFENIKLWLQEN 1676
Cdd:pfam15921 296 SIQSQLEIIQEQARN---QNSMYMRqLSDLESTVSQ----LRSELREAKRMYED-----KIEELeKQLVLANSELTEART 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1677 HEDEVKKVKAEVED-LRYLLDQSQKESQclksELQAQKEANSRAPTTTMRN--LVERLKSQLALKEKQQKALSRALLELR 1753
Cdd:pfam15921 364 ERDQFSQESGNLDDqLQKLLADLHKREK----ELSLEKEQNKRLWDRDTGNsiTIDHLRRELDDRNMEVQRLEALLKAMK 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1754 AEMTAAAEERIISATSQKEAHLNVQQivdrhtreLKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKA 1833
Cdd:pfam15921 440 SECQGQMERQMAAIQGKNESLEKVSS--------LTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERA 511
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1834 ynkilrekdeidqendelkrqikrltsglqgkpltdnkqslIEELQRKIKKLESQLEGKVDEVDlkpmKEKNAKEELirw 1913
Cdd:pfam15921 512 -----------------------------------------IEATNAEITKLRSRVDLKLQELQ----HLKNEGDHL--- 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1914 eegKKWQAKIEGIRNKLKEKEGEVCTLTKQLNTLKDLFAKADK-------EKLTLQRKLKTTGMTVdQVLGVRALESEKE 1986
Cdd:pfam15921 544 ---RNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRtagamqvEKAQLEKEINDRRLEL-QEFKILKDKKDAK 619
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1987 LEELKKRNLDLEndilymrahqaLPRDSVVEDLHLQNRYLQEKLHALEKQLSKDTYSRPSISGIGSDdhcqreQELQKEN 2066
Cdd:pfam15921 620 IRELEARVSDLE-----------LEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSED------YEVLKRN 682
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2067 LKLSSENIE-----LKFQLEQANKDLPRLKNQVRDLKEMCEFLKKEKAEVERKLGHVRGSgrsgktIPELEKTIGLMKKV 2141
Cdd:pfam15921 683 FRNKSEEMEtttnkLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQ------IDALQSKIQFLEEA 756
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 1622846131 2142 VEKVQRENEQLKKASGILtSEKMANIEQENEKLKAELEKLKAH 2184
Cdd:pfam15921 757 MTNANKEKHFLKEEKNKL-SQELSTVATEKNKMAGELEVLRSQ 798
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
971-1311 |
7.22e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.20 E-value: 7.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 971 NELTSKYRDILQKDNMLVQRTSNLEHLECENASLKEQVESINKELEiTKEKLHTIEQAWEQEtrlgnessMDKakksitN 1050
Cdd:pfam17380 268 NEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVE-RRRKLEEAEKARQAE--------MDR------Q 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1051 SDIVSISKKITMLEMKELnERQRAEHCQKMYEHLRtslkqMEERNFELEtKFAELTKINLDAQKVEQMLRDELAGSVSKA 1130
Cdd:pfam17380 333 AAIYAEQERMAMEREREL-ERIRQEERKRELERIR-----QEEIAMEIS-RMRELERLQMERQQKNERVRQELEAARKVK 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1131 VSDADRQRILELEKNEMEL------KVEVSKLREISDIARRQVEILNAQQQSREKEVESLRMQlldyQAQSDEKALIAKL 1204
Cdd:pfam17380 406 ILEEERQRKIQQQKVEMEQiraeqeEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQ----EEERKRKKLELEK 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1205 HQHNVSLQLSEATALGKLESITSKLQKMEAYNMR--LEQKLDEKEQALYYArlEGRNRAKHLRQTIQSL--RRQFSGALP 1280
Cdd:pfam17380 482 EKRDRKRAEEQRRKILEKELEERKQAMIEEERKRklLEKEMEERQKAIYEE--ERRREAEEERRKQQEMeeRRRIQEQMR 559
|
330 340 350
....*....|....*....|....*....|.
gi 1622846131 1281 LAQQEKFSKTMIQLQNDKLKIMQEMKNSQQE 1311
Cdd:pfam17380 560 KATEERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
113-663 |
8.25e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 8.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 113 LRDEIRQLAKQLEQKDRELEDIEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQL--CQDIIDYQKQIDSQ 190
Cdd:PRK03918 212 ISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIeeLEEKVKELKELKEK 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 191 KETLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMR------KNLEESVQEMEKMTDEYNRMKAIV 264
Cdd:PRK03918 292 AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEelkkklKELEKRLEELEERHELYEEAKAKK 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 265 HQtdnvIDQLKKENDHYRLQ--VQELTDLLKAKNEEDDPIMvAVNAKVEEWKLILSSKDDEIIEyqqmlhnlrekLKNAQ 342
Cdd:PRK03918 372 EE----LERLKKRLTGLTPEklEKELEELEKAKEEIEEEIS-KITARIGELKKEIKELKKAIEE-----------LKKAK 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 343 ldaDKSNVMALQQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQrnKGASTLSQQTHYMKIQSTLDILKEKTk 422
Cdd:PRK03918 436 ---GKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELR--ELEKVLKKESELIKLKELAEQLKELE- 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 423 eaERTAELAEADAREKDKELVETLKRLKDYESGVYGLEDAVVEIKNCKNQIKIRDREIEILTKEINKLELKINDFLDEN- 501
Cdd:PRK03918 510 --EKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESv 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 502 EALRERVGLEPKTMIDLTEFRNSKRlkqqqyraENQILLKEIESLEEErldlKKKIRQMAQERGKRSATSGLTTEDLNLT 581
Cdd:PRK03918 588 EELEERLKELEPFYNEYLELKDAEK--------ELEREEKELKKLEEE----LDKAFEELAETEKRLEELRKELEELEKK 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 582 ENISQGDRISERKLDLLSLknmseaksknefLSRELIEKERdLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKE 661
Cdd:PRK03918 656 YSEEEYEELREEYLELSRE------------LAGLRAELEE-LEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALER 722
|
..
gi 1622846131 662 MQ 663
Cdd:PRK03918 723 VE 724
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
789-1670 |
1.09e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 789 LQELENKEKKLKNLEDSLEDYNRKFAVIRHQ--QSLLYKEYLSEKDT-----WKTESKTIKEEKRKLEDQIQQDAIKVKE 861
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILNELERQLKSLERQaeKAERYKELKAELRElelalLVLRLEELREELEELQEELKEAEEELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 862 YNNLLNALQMDSDEMKKILAENSRKITVLQvneKSLIRQYTILVELERQLRKENEKQKNeLLSMEAEVCEKLGCLQRFKE 941
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIEELQ---KELYALANEISRLEQQKQILRERLAN-LERQLEELEAQLEELESKLD 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 942 MAIFKIAALQKVVDnsVCLSELELANKQYNELTSKYRDILQKdnmLVQRTSNLEHLECENASLKEQVESINKELEITKEK 1021
Cdd:TIGR02168 334 ELAEELAELEEKLE--ELKEELESLEAELEELEAELEELESR---LEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1022 LHTIEQAWEQETrlgnessmdkakksitnSDIVSISKKITMLEMKELNERqraehcqkmYEHLRTSLKQMEERNFELETK 1101
Cdd:TIGR02168 409 LERLEDRRERLQ-----------------QEIEELLKKLEEAELKELQAE---------LEELEEELEELQEELERLEEA 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1102 FAELTKINLDAQKVEQMLRDELAGSVSKAVSDADRQRilELEKNEMELKVEVSKLREISDIARRQVEILNAQQQSrEKEV 1181
Cdd:TIGR02168 463 LEELREELEEAEQALDAAERELAQLQARLDSLERLQE--NLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGY-EAAI 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1182 E---SLRMQLLDYQAQSDEKALIAKLHQHNvslqlseataLGKLESITSKLQKMEAYNMRLEQKLDEKEQALYYArlegr 1258
Cdd:TIGR02168 540 EaalGGRLQAVVVENLNAAKKAIAFLKQNE----------LGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVA----- 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1259 nrakhlrqtiqSLRRQFSGALPLAQQEKFSKTMIQlqnDKLKIMQEMKNsqQEHRNMENKTLEMELKLKGLeelISTLKD 1338
Cdd:TIGR02168 605 -----------KDLVKFDPKLRKALSYLLGGVLVV---DDLDNALELAK--KLRPGYRIVTLDGDLVRPGG---VITGGS 665
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1339 TKGAQKVINWHMKIEELRL-------QELKLNRELVKDKEEIKYLNNIISEYERTISSLEEEIVQQNK---FHEERQLAW 1408
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEkieeleeKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKdlaRLEAEVEQL 745
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1409 DQREVDLERQLDIFDRQQNEILNAAQKFEEATGSIPDPSLPLPNQLEMALRKIKENIRIILETRATCRSLEEKLKEKESA 1488
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1489 LRLAEQNILSRDKVINELRLRLPATAEREKLIAELGRKEMEPKSHHTLKIAHqtianMQARLNQKEEVLKKYQHLLEKAR 1568
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA-----LLNERASLEEALALLRSELEELS 900
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1569 EEQREI---VKKHEEDLHILHHKLElQADSSLNKFKQTAWDLMKQSptpvpTNKHFIRLAEMEQTVAEQDDSLSSLLIKL 1645
Cdd:TIGR02168 901 EELRELeskRSELRRELEELREKLA-QLELRLEGLEVRIDNLQERL-----SEEYSLTLEEAEALENKIEDDEEEARRRL 974
|
890 900
....*....|....*....|....*
gi 1622846131 1646 KKVSQDLERQREITELKVKEFENIK 1670
Cdd:TIGR02168 975 KRLENKIKELGPVNLAAIEEYEELK 999
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1624-2393 |
1.13e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1624 LAEMEQTVAEQDDSLSSLLIKLKKVSQDLERQREITELKvKEFENIKLWL----QENHEDEVKKVKAEVEDLRYLLDQSQ 1699
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALL-KEKREYEGYEllkeKEALERQKEAIERQLASLEEELEKLT 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1700 KESQCLKSELqAQKEANSRAPTTTMRNLVE----RLKSQLALKEKQQKALSRALLELRAEMTAAAEERiisatSQKEAHL 1775
Cdd:TIGR02169 258 EEISELEKRL-EEIEQLLEELNKKIKDLGEeeqlRVKEKIGELEAEIASLERSIAEKERELEDAEERL-----AKLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1776 NVQQivdRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKDEIDQENDELKRQI 1855
Cdd:TIGR02169 332 DKLL---AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1856 KRLTSGLQGKP--LTDNKQSlIEELQRKIKKLESQLEGKVDEVDLKPMKEKNAKEELIRWEEGK-KWQAKIEGIRNKLKE 1932
Cdd:TIGR02169 409 DRLQEELQRLSeeLADLNAA-IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELyDLKEEYDRVEKELSK 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1933 KEGEVCTLTKQLNTLKDLFAKADKEKLTLQRKLKTTGMTVDQVLGVRALESEKELEELKKR--NLDLEND------ILYM 2004
Cdd:TIGR02169 488 LQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRlnNVVVEDDavakeaIELL 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2005 RAHQA-----LPRDSVvEDLHLQNRYLQEK--------LHALEKQLSKDTYSRPSISGIGSDDHCQREQELQKENLKLSS 2071
Cdd:TIGR02169 568 KRRKAgratfLPLNKM-RDERRDLSILSEDgvigfavdLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYRMVTLEG 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2072 ENIE---------------LKFQLEQANKdLPRLKNQVRDLKEMCEFLKKEKAEVERKLGHVRGS-GRSGKTIPELEKTI 2135
Cdd:TIGR02169 647 ELFEksgamtggsraprggILFSRSEPAE-LQRLRERLEGLKRELSSLQSELRRIENRLDELSQElSDASRKIGEIEKEI 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2136 GLMKKVVEKVQRENEQLKKASGILTSEKMANI-------------EQENEKLKAELEKLKAHFGHQLSMHYESKTKGTEK 2202
Cdd:TIGR02169 726 EQLEQEEEKLKERLEELEEDLSSLEQEIENVKselkelearieelEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEE 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2203 IIAENER----LRKELKKETDAAEKLRIAKNNLEILNEKMTVQLEETGKRLQFAESRGPQLEgadskswksivvtrmyeT 2278
Cdd:TIGR02169 806 EVSRIEArlreIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELE-----------------E 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2279 KLKELETDIAKKNQSITDLKQLVKEATEREQKVKKYTEDLEEQIKILKHVPEgaeteqGLRQELQVLRLANSQLDKEKAE 2358
Cdd:TIGR02169 869 ELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS------ELKAKLEALEEELSEIEDPKGE 942
|
810 820 830
....*....|....*....|....*....|....*
gi 1622846131 2359 LIHQIEAnkdqsgaestIPDADQLKEKVKDLETQL 2393
Cdd:TIGR02169 943 DEEIPEE----------ELSLEDVQAELQRVEEEI 967
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1623-1948 |
1.52e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1623 RLAEMEQTVAEQDDSLSSLLIKLKKVSQDLERQREITELKVKEFENIKLWLQENHEDEvKKVKAEVEDLRYLLDQSQKES 1702
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEE-EKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1703 QCLKSELQ--AQKEANSRAPTTTMRNLVERLKSQLALKEKQQK-ALSRALLELRAEMTAAAE--ERIISATSQKEAHLN- 1776
Cdd:TIGR02169 754 ENVKSELKelEARIEELEEDLHKLEEALNDLEARLSHSRIPEIqAELSKLEEEVSRIEARLReiEQKLNRLTLEKEYLEk 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1777 -----VQQIVDRHTR--ELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKDEIDQEND 1849
Cdd:TIGR02169 834 eiqelQEQRIDLKEQikSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIE 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1850 ELKRQIKRLTSGLQgkpltdNKQSLIEELQRKIKKLESQLEGKVDEVDLKPMKEKnaKEELIR------------WEEGK 1917
Cdd:TIGR02169 914 KKRKRLSELKAKLE------ALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQR--VEEEIRalepvnmlaiqeYEEVL 985
|
330 340 350
....*....|....*....|....*....|.
gi 1622846131 1918 KWQAKIEGIRNKLKEKEGEVCTLTKQLNTLK 1948
Cdd:TIGR02169 986 KRLDELKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
36-277 |
1.64e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 36 EVNELKSEKQENVIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFENQLKTKVMKLENELEMAQQSAGGR-----DT 110
Cdd:TIGR02169 252 ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLakleaEI 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 111 RFLRDEIRQLAKQLEQKDRELEDIEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLCQDIIDYQKQIDSQ 190
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 191 KETLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKAIVHQTDNV 270
Cdd:TIGR02169 412 QEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRE 491
|
....*..
gi 1622846131 271 IDQLKKE 277
Cdd:TIGR02169 492 LAEAEAQ 498
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
214-854 |
1.76e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 214 ELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKAIVHQTDNVIDQLKKENDHYRLQVQELTDLLK 293
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 294 AKNEEDDpimvAVNAKVEEWKLILSSKDDEIIEYQQMLHNLREKLK--NAQLDADKSNVMALQQGIQERDSQIKMLTEQV 371
Cdd:COG1196 320 ELEEELA----ELEEELEELEEELEELEEELEEAEEELEEAEAELAeaEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 372 EQYTKEMEKNTFIIEDLKNELQRNKGAstlsqqthymkiQSTLDILKEKTKEAERTAELAEADAREKDKELVETLKRLKD 451
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEE------------LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 452 yesgvyGLEDAVVEIKNCKNQIKIRDREIEILTKEINKLELKINDFLDENEALRERVGLEPKTMIDLTEFRNSKRLKQQQ 531
Cdd:COG1196 464 ------LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYE 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 532 YRAENQILLKEIESLEEERLDLKKKIRQMAQERGKRSATSGLTTEDLN--LTENISQGDRISERKLDLLSLKNMSEAKSK 609
Cdd:COG1196 538 AALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARaaLAAALARGAIGAAVDLVASDLREADARYYV 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 610 NEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQkdpdvnggetsliipSLERLVNAIES 689
Cdd:COG1196 618 LGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL---------------AALLEAEAELE 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 690 KNAEGIFDASLHLKAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSLLRQSEGSNVVFKGIDLPDg 769
Cdd:COG1196 683 ELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD- 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 770 iapssasiinsqneylihlLQELENKEKKLKNLEDSLEDYNrkfavirhqqsLL----YKEYLSEKDTWKTESKTIKEEK 845
Cdd:COG1196 762 -------------------LEELERELERLEREIEALGPVN-----------LLaieeYEELEERYDFLSEQREDLEEAR 811
|
....*....
gi 1622846131 846 RKLEDQIQQ 854
Cdd:COG1196 812 ETLEEAIEE 820
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
153-735 |
1.86e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 46.74 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 153 EEAENENSKLRRENKRLKKKNEQLCQDIIDYQKQIDSQKETLLSRRgedsdyrsqlskknyelvqylDEIQTLTEAneki 232
Cdd:pfam10174 112 ELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQTLGARD---------------------ESIKKLLEM---- 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 233 eVQNQEMRKNLEESVQEMEKMTDEYnrmKAIVHQTDNVIDQLKKENDHYRLQvqeltdlLKAKNEeddpiMVAVNAKVEE 312
Cdd:pfam10174 167 -LQSKGLPKKSGEEDWERTRRIAEA---EMQLGHLEVLLDQKEKENIHLREE-------LHRRNQ-----LQPDPAKTKA 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 313 WKLILSSKDDEIIEYQQMLHNLREklknaQLDADKSNVMAlqqGIQERDSQIKMLtEQVEQYTKEMEKNtfiIEDLKNEL 392
Cdd:pfam10174 231 LQTVIEMKDTKISSLERNIRDLED-----EVQMLKTNGLL---HTEDREEEIKQM-EVYKSHSKFMKNK---IDQLKQEL 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 393 QRnKGASTLSQQTHYMKIQST-------LDILKEKTKEAERTAEL--AEADA-----REKDKELVETLKRLKDYESGVYG 458
Cdd:pfam10174 299 SK-KESELLALQTKLETLTNQnsdckqhIEVLKESLTAKEQRAAIlqTEVDAlrlrlEEKESFLNKKTKQLQDLTEEKST 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 459 LEDavvEIKNCKNQIKIRDREIEILTKEINKLELKINDFLDENEALRERV-GLEPKTMIDLTEF-----------RNSKR 526
Cdd:pfam10174 378 LAG---EIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVkSLQTDSSNTDTALttleealsekeRIIER 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 527 LKQQQYRaENQILLKEIESLEEERLDLKKKIRQMAQERGKRSA--------TSGLTTEDLNLTENISQGDRISERKLD-- 596
Cdd:pfam10174 455 LKEQRER-EDRERLEELESLKKENKDLKEKVSALQPELTEKESslidlkehASSLASSGLKKDSKLKSLEIAVEQKKEec 533
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 597 ------LLSLKNMSEAKSKNEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDPDVNG 670
Cdd:pfam10174 534 sklenqLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTLRQM 613
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622846131 671 GETSLIIPSLERLVNAIESKNAEGIFDASL--------HLKAQVDQLTGRNEELRQELRESRKEAINYSQQLA 735
Cdd:pfam10174 614 KEQNKKVANIKHGQQEMKKKGAQLLEEARRrednladnSQQLQLEELMGALEKTRQELDATKARLSSTQQSLA 686
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1133-1958 |
2.39e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 2.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1133 DADRQRILELEKNEMELKVEVSKLREisdiARRQVEILNAQQQSREKEVESLRMQLLDYQAQSDEKAliAKLHQHNVSLq 1212
Cdd:TIGR02169 209 KAERYQALLKEKREYEGYELLKEKEA----LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIE--QLLEELNKKI- 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1213 lsEATALGKLESITSKLQKMEAYNMRLEQKLDEKEQalyyarlEGRNRAKHLRQTIQSLRRQfsgalpLAQQEKFSKTMI 1292
Cdd:TIGR02169 282 --KDLGEEEQLRVKEKIGELEAEIASLERSIAEKER-------ELEDAEERLAKLEAEIDKL------LAEIEELEREIE 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1293 QLQNDKLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTLKDTKGAQKvinwhMKIEELRLQELKLNRELVKDKEE 1372
Cdd:TIGR02169 347 EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK-----REINELKRELDRLQEELQRLSEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1373 IKYLNNIISEYERTISSLEEEIvqqnkfhEERQLAWDQREVDLERQLDIFDRQQNEIlnaaqkfeeatgsipdpslplpn 1452
Cdd:TIGR02169 422 LADLNAAIAGIEAKINELEEEK-------EDKALEIKKQEWKLEQLAADLSKYEQEL----------------------- 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1453 qlemalRKIKENIRIILETRatcRSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATAereKLIAELGRKEMEpks 1532
Cdd:TIGR02169 472 ------YDLKEEYDRVEKEL---SKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVH---GTVAQLGSVGER--- 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1533 hHTLKIAHQTIANMQARLNQKEEVLKKYQHLLekareEQREIVKKHEEDLHILHHKLELQADSSLNKFKQTAWDLMKQSP 1612
Cdd:TIGR02169 537 -YATAIEVAAGNRLNNVVVEDDAVAKEAIELL-----KRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDP 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1613 TPVPTNKHFIRlaemEQTVAEQDDSLSSLLIKLKKVSQD---LERQREITELKVKEFENIKLWLQEnhEDEVKKVKAEVE 1689
Cdd:TIGR02169 611 KYEPAFKYVFG----DTLVVEDIEAARRLMGKYRMVTLEgelFEKSGAMTGGSRAPRGGILFSRSE--PAELQRLRERLE 684
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1690 DLRYLLDQSQKESQCLKSELQAQKEANSRAP--TTTMRNLVERL-------KSQLALKEKQQKALSRALLELRAEMTAAA 1760
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENRLDELSQELSDASrkIGEIEKEIEQLeqeeeklKERLEELEEDLSSLEQEIENVKSELKELE 764
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1761 EERiisATSQKEAHLNVQQIVDRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILRE 1840
Cdd:TIGR02169 765 ARI---EELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQ 841
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1841 KDEIDQENDELKRQIkrltsglqgkpltDNKQSLIEELQRKIKKLESQLEgkvdevDLKPMKEKNAKEELIRWEEGKKWQ 1920
Cdd:TIGR02169 842 RIDLKEQIKSIEKEI-------------ENLNGKKEELEEELEELEAALR------DLESRLGDLKKERDELEAQLRELE 902
|
810 820 830
....*....|....*....|....*....|....*...
gi 1622846131 1921 AKIEGIRNKLKEKEGEVCTLTKQLNTLKDLFAKADKEK 1958
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPK 940
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
518-1326 |
3.01e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 3.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 518 LTEFRNSKRLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQERGKRSatsgltteDLNLTENISQGDRISERKLDL 597
Cdd:pfam15921 80 LEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMA--------DIRRRESQSQEDLRNQLQNTV 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 598 LSLKN--------MSEAKSKNEFLSRELIEKERDLERSRTVIAKFQNKL-KELVEENKQLEEGMKEILQAIKEMQKDPDV 668
Cdd:pfam15921 152 HELEAakclkedmLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASgKKIYEHDSMSTMHFRSLGSAISKILRELDT 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 669 nggETSLIIPSLERLVNAIESKNAEGIFDASLHLKAQVDQltgrneeLRQELRESRKEAINYSQQLAKANLKIDHLEKET 748
Cdd:pfam15921 232 ---EISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDR-------IEQLISEHEVEITGLTEKASSARSQANSIQSQL 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 749 SLLRQSEGSNVVFKGIDLPDgiAPSSASIINSQneylihLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLYKE-- 826
Cdd:pfam15921 302 EIIQEQARNQNSMYMRQLSD--LESTVSQLRSE------LREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQEsg 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 827 --------YLSEKDTWKTESKTIKEEKRKLEDQIQQDAIKVKEYNNLLNALQMDSDEMKKIL--------AENSRKITVL 890
Cdd:pfam15921 374 nlddqlqkLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLkamksecqGQMERQMAAI 453
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 891 QVNEKSLIRQYTILVELE------RQLRKENEKQKNELLSMEAEVCEKLGCLQRfKEMAIfkiaalqkvvdnsvclselE 964
Cdd:pfam15921 454 QGKNESLEKVSSLTAQLEstkemlRKVVEELTAKKMTLESSERTVSDLTASLQE-KERAI-------------------E 513
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 965 LANKQYNELTSKYRDILQKDNMLVQRTSNLEHLECENASLKEQVESINKELEITKEKLHTIEQAWEQETRLGNESSMDKA 1044
Cdd:pfam15921 514 ATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKA 593
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1045 KKSITNSDivsisKKITMLEMKELNERQRAEhcqkmyehlrtsLKQMEERNFELetkfaELTKINLDAQKVEQMlrdela 1124
Cdd:pfam15921 594 QLEKEIND-----RRLELQEFKILKDKKDAK------------IRELEARVSDL-----ELEKVKLVNAGSERL------ 645
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1125 gsvsKAVSDADRQRILELekNEMEL-KVEVSKLREISDIARRqveilNAQQQSREKEVESLRMQLLDYQAQSDEKALIAK 1203
Cdd:pfam15921 646 ----RAVKDIKQERDQLL--NEVKTsRNELNSLSEDYEVLKR-----NFRNKSEEMETTTNKLKMQLKSAQSELEQTRNT 714
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1204 LHQHNVSLQLSEATALGKLESITSKLQKMEAynmrLEQKLDEKEQALYYArlegrNRAKHLRQtiqslrrqfsgalplAQ 1283
Cdd:pfam15921 715 LKSMEGSDGHAMKVAMGMQKQITAKRGQIDA----LQSKIQFLEEAMTNA-----NKEKHFLK---------------EE 770
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 1622846131 1284 QEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNMENKTLEMELKL 1326
Cdd:pfam15921 771 KNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVAL 813
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
106-394 |
4.10e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 4.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 106 GGRDTRFLRDEIRQLAKQLEQKDRELEDIEKELEK-EKKVNEQLALRNE------EAENENSKLRRENKRLKKKNEQLCQ 178
Cdd:TIGR02169 658 GSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSlQSELRRIENRLDElsqelsDASRKIGEIEKEIEQLEQEEEKLKE 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 179 DIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTL--TEANEKIEVQNQEMRKnLEESVQEMEKMTDE 256
Cdd:TIGR02169 738 RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLeaRLSHSRIPEIQAELSK-LEEEVSRIEARLRE 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 257 YNRMKAIVHQTDNVIDQLKKENDHYRLQVQELTDLLKAKNEEDDPIMVAVNAKVEEWKLILSSKDDEIIEYQQMLHNLRE 336
Cdd:TIGR02169 817 IEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622846131 337 KLK---------NAQLDADKSNVMALQQGIQERDSQIKMLTEQVEQyTKEMEKNTFIIEDLKNELQR 394
Cdd:TIGR02169 897 QLRelerkieelEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE-DEEIPEEELSLEDVQAELQR 962
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
34-429 |
4.37e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.90 E-value: 4.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 34 KVEVNELKSEKQENVIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFENQLKTKVMKLENELEMaqqsaggrdtrfl 113
Cdd:PTZ00121 1565 KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEE------------- 1631
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 114 RDEIRQLAKQLEQKDRELEDIEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLCQDIIDYQKqidsqKET 193
Cdd:PTZ00121 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK-----AEE 1706
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 194 LLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKievQNQEMRKNLEESVQEMEKMTDEYNRMKAIVHQTDNVIDQ 273
Cdd:PTZ00121 1707 LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK---KAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 274 -LKKENDHYRLQVQELTDLLKAKNEEDDPIMVAVNAKVEEWKLILSSKDDEIIEYQQMlhnLREKLKNAQLDADKSNVMA 352
Cdd:PTZ00121 1784 eLDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNM---QLEEADAFEKHKFNKNNEN 1860
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622846131 353 LQQGIQERDSQIKmlTEQVEQYTKEMEKNTFIIEDLKNELQRNKGASTLSQQtHYMKIQSTLDILKEKTKEAERTAE 429
Cdd:PTZ00121 1861 GEDGNKEADFNKE--KDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGK-NNDIIDDKLDKDEYIKRDAEETRE 1934
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
459-1286 |
6.47e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 6.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 459 LEDAVVEIKNCKNQIKIRDREIEILTKEINKLELkindflDENEALRERVGLEPKTMIDLTEFRNSKrlkqQQYRAENQI 538
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLRR------EREKAERYQALLKEKREYEGYELLKEK----EALERQKEA 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 539 LLKEIESLEEERLDLKKKIrqmaQERGKRSATSGLTTEDLNLTENISQGDRISERKLDLLSLKnmseakSKNEFLSRELI 618
Cdd:TIGR02169 242 IERQLASLEEELEKLTEEI----SELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELE------AEIASLERSIA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 619 EKERDLERSrtviakfQNKLKELVEENKQLEEGMKEILQAIKEMQKDPDVNGGETSLIIPSLERLVNAIESKNAEG--IF 696
Cdd:TIGR02169 312 EKERELEDA-------EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFaeTR 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 697 DASLHLKAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSLLrqsegsnvvfkgidlpDGIAPSSAS 776
Cdd:TIGR02169 385 DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINEL----------------EEEKEDKAL 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 777 IINSQNEYLIHLLQELENKEKKLKNLEDSLEDYNRKfaviRHQQSLLYKEYLSEKDTWKTESKTIKEEKRKLEDQIQ--- 853
Cdd:TIGR02169 449 EIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE----LSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQgvh 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 854 ---QDAIKVKEY---------NNLLNALQMDSDEMKKilaensRKITVLQvnEKSLIRQYTIlvelerQLRKENEKQKNE 921
Cdd:TIGR02169 525 gtvAQLGSVGERyataievaaGNRLNNVVVEDDAVAK------EAIELLK--RRKAGRATFL------PLNKMRDERRDL 590
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 922 LLSMEAEVCEKLGCLQRFKEmaifKIA-ALQKVVDNSVCLSELELANkqynELTSKYR------DILQKD-------NML 987
Cdd:TIGR02169 591 SILSEDGVIGFAVDLVEFDP----KYEpAFKYVFGDTLVVEDIEAAR----RLMGKYRmvtlegELFEKSgamtggsRAP 662
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 988 VQRTSNLEHLECENASLKEQVESINKELEITKEKLHTIEQAWEQETrlgneSSMDKAKKSitnsdIVSISKKITMLEMKE 1067
Cdd:TIGR02169 663 RGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELS-----QELSDASRK-----IGEIEKEIEQLEQEE 732
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1068 LNERQRAehcqkmyEHLRTSLKQMEERNFELETKFAELTKINLDAQKVEQMLRDELAgsvsKAVSDADRQRILELEKNEM 1147
Cdd:TIGR02169 733 EKLKERL-------EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALN----DLEARLSHSRIPEIQAELS 801
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1148 ELKVEVSKLREISDIARRQVEILNAQQQSREKEVESLRMQLLDYQAQSDE--------KALIAKLHQHNVSLQLSEATAL 1219
Cdd:TIGR02169 802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSiekeienlNGKKEELEEELEELEAALRDLE 881
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622846131 1220 GKLESITSKLQKMEAYNMRLEQKLDEKEQALYYARLegrnRAKHLRQTIQSLRRQFSGALPLAQQEK 1286
Cdd:TIGR02169 882 SRLGDLKKERDELEAQLRELERKIEELEAQIEKKRK----RLSELKAKLEALEEELSEIEDPKGEDE 944
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1674-1864 |
8.74e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 8.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1674 QENHEDEVKKVKAEVEDLRYLLDQSQKESQCLKSELQAQKEANSRApTTTMRNL---VERLKSQLALKEKQQKALSRALL 1750
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAAL-ARRIRALeqeLAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1751 ELR---AEMTAAAEER--------IISATSQKEAhLNVQQIVDRHTRELKTQVEDLNEN---LLKLKEALKTSKNRENSL 1816
Cdd:COG4942 101 AQKeelAELLRALYRLgrqpplalLLSPEDFLDA-VRRLQYLKYLAPARREQAEELRADlaeLAALRAELEAERAELEAL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1622846131 1817 TDNLNDLNNELQKKQKAYNKIL----REKDEIDQENDELKRQIKRLTSGLQG 1864
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLarleKELAELAAELAELQQEAEELEALIAR 231
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1781-2408 |
8.93e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 8.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1781 VDRHTRELKTQVEDLNEnllKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKDEIDQENDELKRQIKRLTS 1860
Cdd:pfam15921 76 IERVLEEYSHQVKDLQR---RLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1861 GLQG-----KPLTDNKQSLIEELQRKIKKLESQLEG------KVDEVDLKPMKEKNAKEELIRWEEGKKWQAKIEGIRNK 1929
Cdd:pfam15921 153 ELEAakclkEDMLEDSNTQIEQLRKMMLSHEGVLQEirsilvDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1930 LKEKEGEVCTLTKQLNTLKD---------LFAKADK-EKLTLQRKLKTTGMTvDQVLGVRALESEKELEELKKRNLDLEN 1999
Cdd:pfam15921 233 ISYLKGRIFPVEDQLEALKSesqnkiellLQQHQDRiEQLISEHEVEITGLT-EKASSARSQANSIQSQLEIIQEQARNQ 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2000 DILYMRAHQALPR--DSVVEDLHLQNRYLQEKLHALEKQL------------SKDTYSRPS------ISGIGSDDHcQRE 2059
Cdd:pfam15921 312 NSMYMRQLSDLEStvSQLRSELREAKRMYEDKIEELEKQLvlanselteartERDQFSQESgnlddqLQKLLADLH-KRE 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2060 QEL---QKENLKLSSENIELKFQLEQANKDLPRLKNQVRDLKEMCEFLKKE-KAEVERKLGHVRGSGRSGKTIP----EL 2131
Cdd:pfam15921 391 KELsleKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSEcQGQMERQMAAIQGKNESLEKVSsltaQL 470
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2132 EKTIGLMKKVVEKVQRENEQLKKASGILTSEKMANIEQEN--EKLKAELEKLKAHFGHQLS--MHYESKTKGTEKIIAEN 2207
Cdd:pfam15921 471 ESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERaiEATNAEITKLRSRVDLKLQelQHLKNEGDHLRNVQTEC 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2208 ERLRKELKKETDAAEKLRIAKNNL------------EILNEKMTVQLEETGKRLQFAESRGPQlegaDSKSWKsivvTRM 2275
Cdd:pfam15921 551 EALKLQMAEKDKVIEILRQQIENMtqlvgqhgrtagAMQVEKAQLEKEINDRRLELQEFKILK----DKKDAK----IRE 622
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 2276 YETKLKELETDIAK-------KNQSITDLKQ----LVKEATEREQKVKKYTEDLEEQIKILKHVPEGAETEQGlRQELQv 2344
Cdd:pfam15921 623 LEARVSDLELEKVKlvnagseRLRAVKDIKQerdqLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTN-KLKMQ- 700
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622846131 2345 LRLANSQLDKEKAELIHQI----EANKDQSGAESTIP----DADQLKEKVKDLETQLKMSDLEKQHLKEEIK 2408
Cdd:pfam15921 701 LKSAQSELEQTRNTLKSMEgsdgHAMKVAMGMQKQITakrgQIDALQSKIQFLEEAMTNANKEKHFLKEEKN 772
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
373-869 |
9.56e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.68 E-value: 9.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 373 QYTKEMEKNTFIIEDLKNELQRNKGASTLSQQTHYMKIqstlDILKEKtkeAERTAELAEADAREKDKEL-VETLKRLKD 451
Cdd:COG5022 807 GSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKA----EVLIQK---FGRSLKAKKRFSLLKKETIyLQSAQRVEL 879
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 452 YESGVYGLEDAVVEIKNCKNQIKIRDREIEILTKEINKLELKINDFLDENEAlrervglEPKTMIDLTEFRNSKRLKQQQ 531
Cdd:COG5022 880 AERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIA-------RLKKLLNNIDLEEGPSIEYVK 952
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 532 YRAENQILLKEiesleeerldlkKKIRQMAQERGKRSATSGLTTEDLN-LTENISQGDRISERKLDLlsLKNMSEAKSKN 610
Cdd:COG5022 953 LPELNKLHEVE------------SKLKETSEEYEDLLKKSTILVREGNkANSELKNFKKELAELSKQ--YGALQESTKQL 1018
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 611 EFLSRELIEKERDLERSRTVIAKFQNKLKE------LVEENKQLEEGMKEILQAiKEMQKDPDVNgGETSLIIPSLERLV 684
Cdd:COG5022 1019 KELPVEVAELQSASKIISSESTELSILKPLqklkglLLLENNQLQARYKALKLR-RENSLLDDKQ-LYQLESTENLLKTI 1096
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 685 NA--IESKNAEGIFDASLhLKAQVDQltGRNEELRQELRESRKEAINYS----QQLAKANLKIDHLEKETSLlrQSEGSN 758
Cdd:COG5022 1097 NVkdLEVTNRNLVKPANV-LQFIVAQ--MIKLNLLQEISKFLSQLVNTLepvfQKLSVLQLELDGLFWEANL--EALPSP 1171
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 759 VVFKGIDLPDGIAPSSASIINSQNEYLIHLLQ-ELENKEKKLKNlEDSLEDYNRKFAV---IRHQQSLLYKEYLSEKDTW 834
Cdd:COG5022 1172 PPFAALSEKRLYQSALYDEKSKLSSSEVNDLKnELIALFSKIFS-GWPRGDKLKKLISegwVPTEYSTSLKGFNNLNKKF 1250
|
490 500 510
....*....|....*....|....*....|....*
gi 1622846131 835 KTESKTIKEEKRKLEDQIQQDAIKVKEYNNLLNAL 869
Cdd:COG5022 1251 DTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPAT 1285
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1623-2112 |
1.39e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1623 RLAEMEQTVAEQDDSLSSLLIKLKKVSQDLERQREitelKVKEFENIKLWLqENHEDEVKKVKAEVEDLRYLLDQSQKES 1702
Cdd:PRK03918 194 LIKEKEKELEEVLREINEISSELPELREELEKLEK----EVKELEELKEEI-EELEKELESLEGSKRKLEEKIRELEERI 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1703 QCLKSELQAQKEANSRAPTttMRNLVERLKSQLALKEKQQKALSRALLEL-RAEMTAAAEERIISATSQKEAHLN----V 1777
Cdd:PRK03918 269 EELKKEIEELEEKVKELKE--LKEKAEEYIKLSEFYEEYLDELREIEKRLsRLEEEINGIEERIKELEEKEERLEelkkK 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1778 QQIVDRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKK----QKAYNKILREKDEIDQENDELKR 1853
Cdd:PRK03918 347 LKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAkeeiEEEISKITARIGELKKEIKELKK 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1854 QIKRLTSG-----LQGKPLT-DNKQSLIEELQRKIKKL----------ESQLEGKVDEVDLKPMKE-------------K 1904
Cdd:PRK03918 427 AIEELKKAkgkcpVCGRELTeEHRKELLEEYTAELKRIekelkeieekERKLRKELRELEKVLKKEseliklkelaeqlK 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1905 NAKEEL--IRWEEGKKWQAKIEGIRNKLKEKEGEVCTLTKQLNTLKDLfakaDKEKLTLQRKLKTTGMTVDQVLGVRALE 1982
Cdd:PRK03918 507 ELEEKLkkYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL----KKKLAELEKKLDELEEELAELLKELEEL 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1983 SEKELEELKKRNLDLENdiLYMRAHQALPRDSVVEDLHLQNRYLQEKLHALEKQLSKDTYS----RPSISGIGSDDHCQR 2058
Cdd:PRK03918 583 GFESVEELEERLKELEP--FYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRleelRKELEELEKKYSEEE 660
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 1622846131 2059 EQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVRDLKEMCEFLKKEKAEVE 2112
Cdd:PRK03918 661 YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| PRK03992 |
PRK03992 |
proteasome-activating nucleotidase; Provisional |
130-176 |
1.48e-03 |
|
proteasome-activating nucleotidase; Provisional
Pssm-ID: 179699 [Multi-domain] Cd Length: 389 Bit Score: 43.67 E-value: 1.48e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1622846131 130 ELEDIEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQL 176
Cdd:PRK03992 2 RLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKL 48
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
38-298 |
1.52e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 38 NELKSEKQENVIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFENQLKTKVMKLENELEMAQQsaggrDTRFLRDEI 117
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE-----RIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 118 RQLAKQLEQKDRELEDIEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLkkkneqlcqdiidyQKQIDSQKETLLSR 197
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDEL--------------RAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 198 RGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKAIVHQTDNVIDQLKKE 277
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
|
250 260
....*....|....*....|.
gi 1622846131 278 NDHYRLQVQELTDLLKAKNEE 298
Cdd:TIGR02168 903 LRELESKRSELRRELEELREK 923
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1732-1896 |
1.56e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1732 KSQLALKEKQQKALSRALLELRAEMTAAAEERiISATSQKEAHLNVQQI---------VDRHTRELKTQVEDLNEN---L 1799
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAEL-DALQERREALQRLAEYswdeidvasAEREIAELEAELERLDASsddL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1800 LKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKDEIDQENDEL-KRQIKRLTSGLQGK----PLTDNKQSL 1874
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAeDLARLELRALLEERfaaaLGDAVEREL 767
|
170 180
....*....|....*....|..
gi 1622846131 1875 IEELQRKIKKLESQLEGKVDEV 1896
Cdd:COG4913 768 RENLEERIDALRARLNRAEEEL 789
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
113-926 |
1.84e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.81 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 113 LRDEIRQLAKQLEQKDRELEdiekelEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLCQDIIDYQKQIDSQKE 192
Cdd:pfam02463 192 LEELKLQELKLKEQAKKALE------YYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 193 TLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKAIVHQTDNVID 272
Cdd:pfam02463 266 KLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 273 QLKKENDHYRLQVQELTDLLKAKNEEDDPIMVAVNAKVEEWKLILSSKDDEIIEYQQMLHNLREKLKNAQLDAD----KS 348
Cdd:pfam02463 346 ELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDllkeEK 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 349 NVMALQQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQRNKGASTLSQQTHYMKIQSTLDILKEKTKEAERTA 428
Cdd:pfam02463 426 KEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKA 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 429 ELAEADAREKDKELVETLKRLKDYESGVYGLEDAVVEIKNCKNQIKIRDREI-EILTKEINKLELKINDFLDENEALRER 507
Cdd:pfam02463 506 RSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATAdEVEERQKLVRALTELPLGARKLRLLIP 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 508 VGLEPKTMIDLTEFRNSKRLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQERGKRSATSGLTTEDLNLTENISQG 587
Cdd:pfam02463 586 KLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVK 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 588 DRISERKLDLLSLKNMSEAKSKNEFLSRELIEKERDLERSRTVIAKFQNKLKELVE-ENKQLEEGMKEILQAIKEMQKDP 666
Cdd:pfam02463 666 ASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEElLADRVQEAQDKINEELKLLKQKI 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 667 DVNGGETSLIIPSLERLVNAIESKNAEGIFDASLHLKAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEK 746
Cdd:pfam02463 746 DEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIE 825
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 747 ETSLLRQSEGSNVVFKGIDLPDGIAPSSASIINSQNEYLIHlLQELENKEKKLKNLEDSLEDYNRKfAVIRHQQSLLYKE 826
Cdd:pfam02463 826 QEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKE-ELLQELLLKEEELEEQKLKDELES-KEEKEKEEKKELE 903
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 827 YLSEKDTWKTESKTIKEEKRKLEDQIQQDAIKVKEYNNLLNALQMDSDEMKKILAENSRKITVLQVNEKSLIRQYTILVE 906
Cdd:pfam02463 904 EESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEF 983
|
810 820
....*....|....*....|
gi 1622846131 907 LERQLRKENEKQKNELLSME 926
Cdd:pfam02463 984 EEKEERYNKDELEKERLEEE 1003
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1003-1570 |
2.51e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 2.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1003 SLKEQVE------SINKELEITK--EKLHTIEQAWEQETRLGNESSMDKAKKSITNSDIVSISKKITMLEMKELNERQRA 1074
Cdd:COG1196 204 PLERQAEkaeryrELKEELKELEaeLLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1075 EHCQKMYEHLRTSLKQMEERNFELETKFAELTKINLDAQKVEQMLRDELAgsvskavsdADRQRILELEKNEMELKVEVS 1154
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELE---------ELEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1155 KLREISDIARRQVEILNAQQQSREKEVESLRMQLLDY-QAQSDEKALIAKLHQHNVSLQLSEATALGKLESITSKLQKME 1233
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAlRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1234 -AYNMRLEQKLDEKEqalyyARLEGRNRAKHLRQTIQSLRRQFSGALPLAQQEKFSKTMIQLQNDKLKIMQEmknsQQEH 1312
Cdd:COG1196 435 eEEEEEEEALEEAAE-----EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA----DYEG 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1313 RNMENKTLEMELKLKGLEELISTL------------------------KDTKGAQKVINWHMKIEELRLQELKLNRElvk 1368
Cdd:COG1196 506 FLEGVKAALLLAGLRGLAGAVAVLigveaayeaaleaalaaalqnivvEDDEVAAAAIEYLKAAKAGRATFLPLDKI--- 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1369 DKEEIKYLNNIISEYERTISSLEEEIVQQNKFHEERQLAWDQREVDLERQLDIFDRQQNEILNAAQKFEEATGSIPDPSl 1448
Cdd:COG1196 583 RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS- 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1449 plpnqleMALRKIKENIRIILETRATCRSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATAEREKLIAELGRKEM 1528
Cdd:COG1196 662 -------LTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 1622846131 1529 EPKSHHTLKIAHQTIANMQARL--NQKEEVLKKYQHLLEKAREE 1570
Cdd:COG1196 735 EELLEELLEEEELLEEEALEELpePPDLEELERELERLEREIEA 778
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
149-394 |
2.64e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 2.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 149 ALRNEEAENENSKLRRENKRLKKKNEQLCQDIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNyelvqylDEIQTLTEA 228
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE-------AELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 229 NEKIEVQNQEMRKNLEESVQEMEKMtDEYNRMKAIVHQTDNvidqlkkendhyrLQVQELTDLLKAKNEEDDPIMVAVNA 308
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRL-GRQPPLALLLSPEDF-------------LDAVRRLQYLKYLAPARREQAEELRA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 309 KVEEwkliLSSKDDEIIEYQQMLHNLREKLKNAQLdadksnvmALQQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDL 388
Cdd:COG4942 158 DLAE----LAALRAELEAERAELEALLAELEEERA--------ALEALKAERQKLLARLEKELAELAAELAELQQEAEEL 225
|
....*.
gi 1622846131 389 KNELQR 394
Cdd:COG4942 226 EALIAR 231
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
151-602 |
2.65e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 151 RNEEAENENSKLRRENKRLKKKNEQLCQDIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEA-- 228
Cdd:TIGR04523 212 KNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQln 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 229 ----------NEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKAIVHQTDNVIDQLKKENDHYRLQVQELTDLLKAKNEE 298
Cdd:TIGR04523 292 qlkseisdlnNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 299 ddpimvavnakVEEWKLILSSKDDEIIEYQQMLHNLREKLKNAQLDADKsnvmaLQQGIQERDSQIKMLTEQVEQYTKEM 378
Cdd:TIGR04523 372 -----------IEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQ-----KDEQIKKLQQEKELLEKEIERLKETI 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 379 EKNTFIIEDLKNELQrnkgastlSQQTHYMKIQSTLDILKEKTKEAERTAELAEADAREKDKELVETLKRLKDYESGVYG 458
Cdd:TIGR04523 436 IKNNSEIKDLTNQDS--------VKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKE 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 459 LEDavvEIKNCKNQIKIRDREIEILTKEINKLELKINDFLDENEALRERvglepKTMIDLTEFRNSKRLKQQQYRAENQI 538
Cdd:TIGR04523 508 LEE---KVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFE-----LKKENLEKEIDEKNKEIEELKQTQKS 579
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622846131 539 LLKEIESLEEERLDLKKKIRQMAQERGKRSATSGLTTEDLNLTEniSQGDRISERKLDLLSLKN 602
Cdd:TIGR04523 580 LKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAK--KENEKLSSIIKNIKSKKN 641
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1757-1957 |
4.15e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 4.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1757 TAAAEERIISATSQKEAHLNVQQIVDRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNK 1836
Cdd:COG3883 11 PAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1837 ILREKDEIDQENDELK-----RQIKRLTSGLQG-KPLTDNKQSLIEELQRKIKKLE---SQLEGKVDEVDLKPMKEKNAK 1907
Cdd:COG3883 91 RARALYRSGGSVSYLDvllgsESFSDFLDRLSAlSKIADADADLLEELKADKAELEakkAELEAKLAELEALKAELEAAK 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1908 EELirweegkkwQAKIEGIRNKLKEKEGEVCTLTKQLNTLKDLFAKADKE 1957
Cdd:COG3883 171 AEL---------EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1623-1866 |
6.42e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 6.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1623 RLAEMEQTVAEQDDSLSSLLIKLKKVSQDL----ERQREITELKVKEFENIKLWLQENHEDEVKKVKAEVEDLRYLLDQS 1698
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELdalqERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAAL 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1699 QKESQCLKSELQAQKEANSRApTTTMRNLVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIiSATSQKEAHLNVQ 1778
Cdd:COG4913 691 EEQLEELEAELEELEEELDEL-KGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF-AAALGDAVERELR 768
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1779 QIVDRHTRELKTQVEDLNENLLKL-KEALKTSKNRENSLTDNLNDL-----------NNELQKKQKAYNKILRE------ 1840
Cdd:COG4913 769 ENLEERIDALRARLNRAEEELERAmRAFNREWPAETADLDADLESLpeylalldrleEDGLPEYEERFKELLNEnsiefv 848
|
250 260
....*....|....*....|....*....
gi 1622846131 1841 ---KDEIDQENDELKRQIKRLTSGLQGKP 1866
Cdd:COG4913 849 adlLSKLRRAIREIKERIDPLNDSLKRIP 877
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
111-258 |
6.67e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 41.62 E-value: 6.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 111 RFLRDEIRQLAKQLEQKDRELEDIEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLCQDIIDyqkqIDSQ 190
Cdd:PRK12705 28 RQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEK----LDNL 103
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622846131 191 KETLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYN 258
Cdd:PRK12705 104 ENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEAD 171
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
35-200 |
7.03e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 7.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 35 VEVNELKSEkqenVIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFENQLKTKVMKLENELEMaqqsaggrdtrfLR 114
Cdd:COG2433 363 VDRDEVKAR----VIRGLSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVER------------LE 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 115 DEIRQLAKQLEQKDRELEDIEKELEKEKKVNEQLALRNEEAenenSKLRRENKRLKKKNEQLCQDIIDYQKQIDSQKETL 194
Cdd:COG2433 427 AEVEELEAELEEKDERIERLERELSEARSEERREIRKDREI----SRLDREIERLERELEEERERIEELKRKLERLKELW 502
|
....*..
gi 1622846131 195 -LSRRGE 200
Cdd:COG2433 503 kLEHSGE 509
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
417-641 |
7.39e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 7.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 417 LKEKTKEAERTAELAEADAREKDKELVETLKRLKDY--ESGVYGLEDavveikncknQIKIRDREIEILTKEINKLELKI 494
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFrqKNGLVDLSE----------EAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 495 NDFLDENEALRERVGLEPKTMIDLTEFRNSKRLKQQQYRAENQI--LLK-------EIESLEEERLDLKKKIRQMAQE-- 563
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELaeLSArytpnhpDVIALRAQIAALRAQLQQEAQRil 315
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622846131 564 RGKRSATSGLTTEDLNLTENISQgdrISERkldllsLKNMSEaksknefLSRELIEKERDLERSRTVIAKFQNKLKEL 641
Cdd:COG3206 316 ASLEAELEALQAREASLQAQLAQ---LEAR------LAELPE-------LEAELRRLEREVEVARELYESLLQRLEEA 377
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1097-1193 |
7.74e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.10 E-value: 7.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1097 ELETKFAELT-KINLDAQKVEQM------LRDELAGSVS-----KAVSDADRQRILELEKNEMELKVEVSKLREISDIAR 1164
Cdd:PRK09039 57 RLNSQIAELAdLLSLERQGNQDLqdsvanLRASLSAAEAersrlQALLAELAGAGAAAEGRAGELAQELDSEKQVSARAL 136
|
90 100
....*....|....*....|....*....
gi 1622846131 1165 RQVEILNAQqqsrekeVESLRMQLLDYQA 1193
Cdd:PRK09039 137 AQVELLNQQ-------IAALRRQLAALEA 158
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1629-1897 |
8.08e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.54 E-value: 8.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1629 QTVAEQDDSLSSLLIKLKKVSQDLERQREITELKVKefeniklwLQENHEDEVKKV-KAEVEDLRYLLDQSQKESQCLKS 1707
Cdd:PHA02562 163 SVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIK--------TYNKNIEEQRKKnGENIARKQNKYDELVEEAKTIKA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1708 ELqaqkeansraptttmrnlvERLKSQLALKEKQQKALSRALLELRAEMTAAAEERiisATSQKEAHLN---------VQ 1778
Cdd:PHA02562 235 EI-------------------EELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKI---EQFQKVIKMYekggvcptcTQ 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622846131 1779 QIVDRHTR--ELKTQVEDLNENLLKLKEALKTSKNRENSLTDN---LNDLNNELQKKQKAYNKILREkdeidqeNDELKR 1853
Cdd:PHA02562 293 QISEGPDRitKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQskkLLELKNKISTNKQSLITLVDK-------AKKVKA 365
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1622846131 1854 QIKRLTSGlqgkplTDNKQSLIEELQRKIKKLESQLEGKVDEVD 1897
Cdd:PHA02562 366 AIEELQAE------FVDNAEELAKLQDELDKIVKTKSELVKEKY 403
|
|
| |
