|
Name |
Accession |
Description |
Interval |
E-value |
| Filament |
pfam00038 |
Intermediate filament protein; |
82-393 |
1.06e-96 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 292.98 E-value: 1.06e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 82 QEKEEMKALNDKFASLIGKVQALEQRNQLLETRWSFLQGQDSA-IFDLGHLYEEYQGRLQEELRKVSQERGQLEANLLQV 160
Cdd:pfam00038 1 NEKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKGAePSRLYSLYEKEIEDLRRQLDTLTVERARLQLELDNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 161 LEKVEEFRIRYEDEISKRTDMEFTFVQLKKDLDAECLRRTELETKLKSLQSFVELMKTIYEQELKDLAAQVKDVSVTVGM 240
Cdd:pfam00038 81 RLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSDTQVNVEM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 241 DSRCHIDLSGIVEEVKAQYDAVAARSLEEAEAYSRSQLEEQVARSAEYGSSLQSSRSEIADLNVRIQKLRSQILSVKSHC 320
Cdd:pfam00038 161 DAARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQK 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 109096743 321 LKLEENIKAAEEQGELAFQDAKTKLAQLEAALQQAKQDMARQLRKYQELMNVKLALDIEIATYRKLVEGEEGR 393
Cdd:pfam00038 241 ASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
85-375 |
2.96e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 2.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 85 EEMKALNDKFASLIGKVQALEQRNQLLETRWSFLQGQDSAIFDLGHLYEEYQGRLQEELRKVSQERGQLEANLLQVLEKV 164
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 165 EEFRIRYEDEISKRTDMEFTFVQLKKDLDAECLRRTELETKLKSLQSFVELMKTIY---EQELKDLAAQVKDVSVTVGMD 241
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAanlRERLESLERRIAATERRLEDL 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 242 SRCHIDLSGIVEEVKAQYDavaarSLEEAEAYSRSQLEEQVARSAEYGSSLQSSRSEIADLNVRIQKLRSQIL------- 314
Cdd:TIGR02168 844 EEQIEELSEDIESLAAEIE-----ELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSelrrele 918
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 109096743 315 ----SVKSHCLKLEE-------NIKAAEEQGELAFQDAKTKLAQLEAALQQAKQDMARQLRKYQELMNVKLA 375
Cdd:TIGR02168 919 elreKLAQLELRLEGlevridnLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLA 990
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
130-388 |
1.84e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 1.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 130 HLYEEYQGRLQEELRKVSQERGQLEANLLQVLEKVEEFR---IRYEDEISKRTDMEFTFV----QLKKDLDAECLRRTEL 202
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRlelEELELELEEAQAEEYELLaelaRLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 203 ETKLKSLqsfvelmktiyEQELKDLAAQvkdvsvtvgmdsrcHIDLSGIVEEVKAQYDAVAA--RSLEEAEAYSRSQLEE 280
Cdd:COG1196 315 EERLEEL-----------EEELAELEEE--------------LEELEEELEELEEELEEAEEelEEAEAELAEAEEALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 281 QVARSAEYGSSLQSSRSEIADLNVRIQKLRSQILSVKSHCLKLEENIKAAEEQGELAFQDAKTKLAQLEAALQQAKQDMA 360
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
250 260
....*....|....*....|....*...
gi 109096743 361 RQLRKYQELMNVKLALDIEIATYRKLVE 388
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEA 477
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
199-395 |
5.54e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 5.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 199 RTELETKLKSLQSFVELMktiyeQELKDLAAQVKDVSVTVgmdsrchidLSGIVEEVKAQYDAvaarsLEEAEAYSRSQL 278
Cdd:TIGR02168 195 LNELERQLKSLERQAEKA-----ERYKELKAELRELELAL---------LVLRLEELREELEE-----LQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 279 EEQVARSAEYGSSLQSSRSEIADLNVRIQKLRSQILSVKSHCLKLEENIKAAEEQGELAFQDAK---TKLAQLEAALQQA 355
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEeleAQLEELESKLDEL 335
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 109096743 356 KQDMARQLRKYQELMNVKLALDIEIATYRKLVEGEEGRMD 395
Cdd:TIGR02168 336 AEELAELEEKLEELKEELESLEAELEELEAELEELESRLE 375
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
75-391 |
1.01e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.97 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 75 AVQQQKNQEKEEMKALNDKFASLIGKVQALEQRNQLLETRWSFLQGQ-----------DSAIFDLGHLYEEYQGRLQEEL 143
Cdd:PRK01156 406 AIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQsvcpvcgttlgEEKSNHIINHYNEKKSRLEEKI 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 144 RKVSQERGQLE---ANLLQVLEKVEEFRI-RYEDEISKRTDMEftfVQLKKDLDAEClRRTELETKLKSLQSFVELMKti 219
Cdd:PRK01156 486 REIEIEVKDIDekiVDLKKRKEYLESEEInKSINEYNKIESAR---ADLEDIKIKIN-ELKDKHDKYEEIKNRYKSLK-- 559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 220 yeqeLKDLAAqvKDVSVTVGMDSRCHIDLSGI---VEEVKAQYDAVAARSLEEAEAYS--RSQLEEQVARSAEYGSSLQS 294
Cdd:PRK01156 560 ----LEDLDS--KRTSWLNALAVISLIDIETNrsrSNEIKKQLNDLESRLQEIEIGFPddKSYIDKSIREIENEANNLNN 633
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 295 SRSEIADLNVRIQKLRSQILSVKSHCLKLEENIKaaeEQGELAFQ--DAKTKLAQLEAALQQAKQDMARQLRKYQELMNV 372
Cdd:PRK01156 634 KYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIP---DLKEITSRinDIEDNLKKSRKALDDAKANRARLESTIEILRTR 710
|
330
....*....|....*....
gi 109096743 373 KLALDIEIATYRKLVEGEE 391
Cdd:PRK01156 711 INELSDRINDINETLESMK 729
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
73-357 |
1.57e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 1.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 73 DPAVQQQKNQEKEEMKALndkFASLIGKVQALEQRNQLLETRWSFLQGQDSAIFDLGHLYEEYQGRLQEELRkvsqergQ 152
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRE---LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE-------E 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 153 LEANLLQVLEKVEEFRIRYEDEISKRTDMEFTFVQLKKDLDAecLRRTELETKLKSLQsfvELMKTIyEQELKDLAAQVK 232
Cdd:TIGR02169 742 LEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALND--LEARLSHSRIPEIQ---AELSKL-EEEVSRIEARLR 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 233 DVSVTVGMDSRCHIDLSGIVEEVKAQYDAvaarsLEEAEAYSRSQLEEQVARSAEYGSSLQSSRSEIADLNVRIQKLRSQ 312
Cdd:TIGR02169 816 EIEQKLNRLTLEKEYLEKEIQELQEQRID-----LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE 890
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 109096743 313 ILSVKSHCLKLEENIKAAEEQGELAFQDAKTKLAQLEAALQQAKQ 357
Cdd:TIGR02169 891 RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
252-393 |
4.01e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.08 E-value: 4.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 252 VEEVKAQYDAVAARSLEEAEAYSRSQLEEQ--VARSAEYGSSLQSSRSEIADLNVRIQKLRSQILSVKSHCLKLEENIKA 329
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEEYelLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEE 341
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 109096743 330 AEEQGELA---FQDAKTKLAQLEAALQQAKQDMARQLRKYQELMNVKLALDIEIATYRKLVEGEEGR 393
Cdd:COG1196 342 LEEELEEAeeeLEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA 408
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
79-312 |
1.07e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 79 QKNQEKEEMKALNDKFASLIGKVQALEQRNQLLETRWSFLQGQDSAIFDLGHLYEEYQGRLQEELRKVSQERGQLEANLL 158
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 159 QVLEKVEEFRIRYEDEISKRTDMEF-------TFVQLKKDLDAECLRRTELETKLKSLQSFVELMKTIYEQELKDLAAQV 231
Cdd:TIGR02168 355 SLEAELEELEAELEELESRLEELEEqletlrsKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 232 KDvsvtvgmdsrchiDLSGIVEEVKAQYDavaarSLEEAEAYSRSQLEEQVARSAEYGSSLQSSRSEIADLNVRIQKLRS 311
Cdd:TIGR02168 435 LK-------------ELQAELEELEEELE-----ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
.
gi 109096743 312 Q 312
Cdd:TIGR02168 497 L 497
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
221-361 |
1.10e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.19 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 221 EQELKDLAAQVKDVSVTVGMDSRCHIDLSGIVEEVKAQYDAVAA-----RSLEEAEAYSRSQLEEQVARSAEYGSSLQ-- 293
Cdd:PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAersrlQALLAELAGAGAAAEGRAGELAQELDSEKqv 131
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 109096743 294 --SSRSEIADLNVRIQKLRSQILSvkshclkLEENIKAAEEQGelafQDAKTKLA----QLEAALQQAKQDMAR 361
Cdd:PRK09039 132 saRALAQVELLNQQIAALRRQLAA-------LEAALDASEKRD----RESQAKIAdlgrRLNVALAQRVQELNR 194
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
221-404 |
5.16e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 5.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 221 EQELKDLAAQVKDVSVTVGMDSrchidLSGIVEEVKAQYDAVAARsLEEAEAySRSQLEEQVARSAEYGSSLQSS----- 295
Cdd:COG3206 195 EAALEEFRQKNGLVDLSEEAKL-----LLQQLSELESQLAEARAE-LAEAEA-RLAALRAQLGSGPDALPELLQSpviqq 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 296 -RSEIADLNVR--------------IQKLRSQILSVKShclKLEENIKAAEEQGELAFQDAKTKLAQLEAALQQAKQDMA 360
Cdd:COG3206 268 lRAQLAELEAElaelsarytpnhpdVIALRAQIAALRA---QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLA 344
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 109096743 361 RQLRKYQELMNVKLALDIEIATYRKLVE-----GEEGRMDLPSATVVSA 404
Cdd:COG3206 345 ELPELEAELRRLEREVEVARELYESLLQrleeaRLAEALTVGNVRVIDP 393
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
133-363 |
6.18e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.22 E-value: 6.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 133 EEYQGRLQ-EELRKVSQERGQLEANLLQV--------LEKVEEFRIRYEDEISKRTDMEFTFVQLKKDLDAECLRRTELE 203
Cdd:PRK05771 34 EDLKEELSnERLRKLRSLLTKLSEALDKLrsylpklnPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 204 TKLKSLQ---SFVELMKT-----IYEQELKDLAAQVKDVSVTVGMDSRCHIDLSGIVEEVKA-QYDAVAARSLEEAEAYS 274
Cdd:PRK05771 114 NEIKELEqeiERLEPWGNfdldlSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDkGYVYVVVVVLKELSDEV 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 275 RSQLEEQVARSAEYGSS------LQSSRSEIADLNVRIQKLRSQILSVKShclKLEENIKAAEEQGElafqdakTKLAQL 348
Cdd:PRK05771 194 EEELKKLGFERLELEEEgtpselIREIKEELEEIEKERESLLEELKELAK---KYLEELLALYEYLE-------IELERA 263
|
250
....*....|....*
gi 109096743 349 EAALQQAKQDMARQL 363
Cdd:PRK05771 264 EALSKFLKTDKTFAI 278
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
68-382 |
8.53e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 8.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 68 LDLKLDPAVQQQKNQEKEEMKALndKFASLIGKVQALEQrnQLLETRWSFLQGQDSAIfdlghlyEEYQGRLQEELRKVS 147
Cdd:TIGR02169 189 LDLIIDEKRQQLERLRREREKAE--RYQALLKEKREYEG--YELLKEKEALERQKEAI-------ERQLASLEEELEKLT 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 148 QERGQLEANLLQVLEKVEEFriryEDEISKRTDMEFtfVQLKKDLDaeclrrtELETKLKSLQSFVELmktiYEQELKDL 227
Cdd:TIGR02169 258 EEISELEKRLEEIEQLLEEL----NKKIKDLGEEEQ--LRVKEKIG-------ELEAEIASLERSIAE----KERELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 228 AAQVkdvsvtvgmdsrchidlsgiveevkAQYDAVAARSLEEAEAYSRsQLEEQVARSAEYGSSLQSSRSEIADLNVRIQ 307
Cdd:TIGR02169 321 EERL-------------------------AKLEAEIDKLLAEIEELER-EIEEERKRRDKLTEEYAELKEELEDLRAELE 374
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 109096743 308 KL--RSQILSVKSHCLKlEENIKAAEEQGELAFQDAK--TKLAQLEAALQQAKQDMARQLRKYQELMNVKLALDIEIAT 382
Cdd:TIGR02169 375 EVdkEFAETRDELKDYR-EKLEKLKREINELKRELDRlqEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK 452
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
75-313 |
1.23e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 75 AVQQQKNQEK--EEMKALNDKFASLIGKVQALEQrnqLLETRWSFLQGQDSAifdlghLYEEYQGRLQEELRKVSQERGQ 152
Cdd:COG4913 243 ALEDAREQIEllEPIRELAERYAAARERLAELEY---LRAALRLWFAQRRLE------LLEAELEELRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 153 LEANLLQVLEKVEEFRIRYEDEISKRTDmeftfvQLKKDLDAECLRRTELETKLKSLQSFVELMKTIYEQELKDLAAQVK 232
Cdd:COG4913 314 LEARLDALREELDELEAQIRGNGGDRLE------QLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRA 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 233 DVSVTVGmdsrchiDLSGIVEEVKAQYDAvAARSLEEAEAySRSQLEEQVArsaeygsSLQSSRSEIADlnvRIQKLRSQ 312
Cdd:COG4913 388 EAAALLE-------ALEEELEALEEALAE-AEAALRDLRR-ELRELEAEIA-------SLERRKSNIPA---RLLALRDA 448
|
.
gi 109096743 313 I 313
Cdd:COG4913 449 L 449
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
261-367 |
1.34e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 261 AVAARSLEEAEAYSRSQLEEQVARSAEYGSSLQSSRSEIADLNVRIQKLRSQILSVKSHCLKLEENIKAAEEQgelaFQD 340
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAE----LAE 87
|
90 100
....*....|....*....|....*..
gi 109096743 341 AKTKLAQLEAALQQAKQDMARQLRKYQ 367
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRALY 114
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
78-344 |
1.36e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 78 QQKNQEKEEMKALNDKFASLIGKVQ----ALEQRNQLLETRWSFLQGQDSAIFDLGHLYEEYQGRLQEELRKVSQERGQL 153
Cdd:PTZ00121 1543 EEKKKADELKKAEELKKAEEKKKAEeakkAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA 1622
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 154 EAnllqvLEKVEEFRIRYEDEISKRTDMEFTFVQLKKDLDAECLRRTELETKLKSLQSFVELMKTIYEQELKDLAAQVKD 233
Cdd:PTZ00121 1623 EE-----LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE 1697
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 234 VSvtvgmDSRCHIDLSGIVEEVKAQYDAVaaRSLEEAEAYSRSQL---EEQVARSAEYGSSLQSSRSEIADLNVRIQKLR 310
Cdd:PTZ00121 1698 AE-----EAKKAEELKKKEAEEKKKAEEL--KKAEEENKIKAEEAkkeAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKA 1770
|
250 260 270
....*....|....*....|....*....|....
gi 109096743 311 SQILSVKSHClkLEENIKAAEEQGELAFqDAKTK 344
Cdd:PTZ00121 1771 EEIRKEKEAV--IEEELDEEDEKRRMEV-DKKIK 1801
|
|
| PRK11556 |
PRK11556 |
MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit; |
333-404 |
2.46e-03 |
|
MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit;
Pssm-ID: 183194 [Multi-domain] Cd Length: 415 Bit Score: 40.16 E-value: 2.46e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 109096743 333 QGELAFQDAKTKLAQLEAALQQAKQDMARqlrkYQELMNVKLALDIEIATYRKLVEGEEGRMDLPSATVVSA 404
Cdd:PRK11556 122 PFKVALAQAQGQLAKDQATLANARRDLAR----YQQLAKTNLVSRQELDAQQALVSETEGTIKADEASVASA 189
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
99-357 |
3.70e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 39.82 E-value: 3.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 99 GKVQALEQRNQLLETRWSFLQGQDSAIFDLGHLYEEYQGRLQEELRKVSQERGQLEAnllQVLEKVEEFRIRY----EDE 174
Cdd:pfam12128 241 PEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDD---QWKEKRDELNGELsaadAAV 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 175 ISKRTDMEFTFVQLKKDLDAECLRRTELETKLKSLQSFVELMktiyEQELKDLAAQVKDVS-----VTVGMDSRCHIDLS 249
Cdd:pfam12128 318 AKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENL----EERLKALTGKHQDVTakynrRRSKIKEQNNRDIA 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 250 GIVEEVKAQYD------AVAARSLEEAEAYSRSQLEEQVARSAEYGSSLQSSRSE-----------------IADLNVRI 306
Cdd:pfam12128 394 GIKDKLAKIREardrqlAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGElklrlnqatatpelllqLENFDERI 473
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 109096743 307 QKLRSQILSVKSHCLKL---EENIKAAEEQGELAFQDAKTKLAQLEAALQQAKQ 357
Cdd:pfam12128 474 ERAREEQEAANAEVERLqseLRQARKRRDQASEALRQASRRLEERQSALDELEL 527
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
140-397 |
3.84e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 3.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 140 QEELRKVSQERGQLEANLLQVLEKVEEFRIRYEDEISKRTDMEFTFVQLKKDLDAECLRRTELETKLKSLQSFVELMKTI 219
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 220 YEQELKDLAAQvkdvsvtvgmdsrchidLSGIVEEVKAQYDAVAARSLEEAEAYSRSQLEEQVARS-AEYGSSLQSSRSE 298
Cdd:COG4942 99 LEAQKEELAEL-----------------LRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPArREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 299 IADLNVRIQKLRSQILsvkshclKLEENIKAAEEQGELAFQDAKTKLAQLEAALQQAKQDMARQLRKYQELMNVKLALDI 378
Cdd:COG4942 162 LAALRAELEAERAELE-------ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
250 260
....*....|....*....|....
gi 109096743 379 EIATYRKLVEGEE-----GRMDLP 397
Cdd:COG4942 235 EAAAAAERTPAAGfaalkGKLPWP 258
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
71-215 |
4.23e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 39.46 E-value: 4.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 71 KLDPAVQQQKNQEKEEMKALNDKFASLIGKVQALEQRNQLLETRwsfLQGQDSAIFdlghlyeeyqgRLQEELRKVSQER 150
Cdd:COG2433 392 EEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAE---LEEKDERIE-----------RLERELSEARSEE 457
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 109096743 151 GQleanllqvlekveefRIRYEDEISKRtdmEFTFVQLKKDLDAECLRRTELETKLKSLQSFVEL 215
Cdd:COG2433 458 RR---------------EIRKDREISRL---DREIERLERELEEERERIEELKRKLERLKELWKL 504
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
75-317 |
7.46e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 38.74 E-value: 7.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 75 AVQQQKNQEKEEMKALNDKFASLIGKVQALEQRNQLLETrwsfLQGQDSAIFDLGHLYEEYQgRLQEELRKVSQERG--- 151
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQERREALQR----LAEYSWDEIDVASAEREIA-ELEAELERLDASSDdla 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 152 QLEANLLQVLEKVEEFRIRYEDEISKRTDMEFTFVQLKKDLDaECLRRTELETKLKSLQSFVELMKTIYEQELKDLAAQV 231
Cdd:COG4913 689 ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELD-ELQDRLEAAEDLARLELRALLEERFAAALGDAVEREL 767
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 232 -----KDVSVTVGMDSRCHIDLSGIVEEVKAQYDAVAA---RSLEEAEAYSR-------SQLEEQVARSAEYGssLQSSR 296
Cdd:COG4913 768 renleERIDALRARLNRAEEELERAMRAFNREWPAETAdldADLESLPEYLAlldrleeDGLPEYEERFKELL--NENSI 845
|
250 260
....*....|....*....|.
gi 109096743 297 SEIADLNvriQKLRSQILSVK 317
Cdd:COG4913 846 EFVADLL---SKLRRAIREIK 863
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
268-351 |
7.53e-03 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 38.61 E-value: 7.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 268 EEAEAYSRSQLEEQVARSAEYGSSLQSSRSEIADLNVRIQKLRSQILSVK-----------------SHCLKLEENIKAA 330
Cdd:PRK10636 534 KENNANSAQARKDQKRREAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEeklgdselydqsrkaelTACLQQQASAKSG 613
|
90 100
....*....|....*....|.
gi 109096743 331 EEQGELAFQDAKTKLAQLEAA 351
Cdd:PRK10636 614 LEECEMAWLEAQEQLEQMLLE 634
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
77-287 |
7.62e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 38.76 E-value: 7.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 77 QQQKNQEKEEMKALNDKFASLIGKVQALEQRNQLLETRwsfLQGQDSAIFDLghlyEEYQGRLQEELRKVSQERGQLEAN 156
Cdd:COG1196 301 EQDIARLEERRRELEERLEELEEELAELEEELEELEEE---LEELEEELEEA----EEELEEAEAELAEAEEALLEAEAE 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 157 LLQVLEKVEEFRIRYEDEISKRTDMEFTFVQLKKDLDAECLRRTELETKLKSLQSFVELMKTIYEQELKDLAAQVKDVSV 236
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 109096743 237 TVGMDSRCHIDLSGIVEEVKAQYDAVAARSLEEAEAYSRSQLEEQVARSAE 287
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
68-211 |
8.45e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 37.60 E-value: 8.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 68 LDLKLDpAVQQQKNQEKEEMKALNDKFASLIGKVQALEQRNQLLETRwsfLQGQDSAIFDLGHLYEEYQGR--------- 138
Cdd:COG1579 15 LDSELD-RLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKE---IKRLELEIEEVEARIKKYEEQlgnvrnnke 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 109096743 139 ---LQEELRKVSQERGQLEANLLQVLEKVEEFRIRYEDEISKRTDMEFTFVQLKKDLDAEclrRTELETKLKSLQS 211
Cdd:COG1579 91 yeaLQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEE---LAELEAELEELEA 163
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
80-356 |
8.94e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 38.51 E-value: 8.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 80 KNQEKE------EMKALNDKFASLIGKVQALEQRNQLLETRWSFLQGqdsaifdlghlyeeyqgrLQEELRKVSQERGQL 153
Cdd:PRK03918 196 KEKEKEleevlrEINEISSELPELREELEKLEKEVKELEELKEEIEE------------------LEKELESLEGSKRKL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 154 EANLLQVLEKVEEFRIRYEDEISKRTDMEftfvQLKKDLDaECLRRTELETKLKSLQSFVELMKTIYEQELKDLAAQVKD 233
Cdd:PRK03918 258 EEKIRELEERIEELKKEIEELEEKVKELK----ELKEKAE-EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 234 VSvtvGMDSRCHiDLSGIVEEVKaqydavaaRSLEEAEAYSRsQLEEQVARSAEygssLQSSRSEIADLNvrIQKLRSQI 313
Cdd:PRK03918 333 LE---EKEERLE-ELKKKLKELE--------KRLEELEERHE-LYEEAKAKKEE----LERLKKRLTGLT--PEKLEKEL 393
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 109096743 314 LSVKSHCLKLEENI-KAAEEQGELafqdaKTKLAQLEAALQQAK 356
Cdd:PRK03918 394 EELEKAKEEIEEEIsKITARIGEL-----KKEIKELKKAIEELK 432
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
252-391 |
9.94e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 38.38 E-value: 9.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 252 VEEVKAQYDAVAAR--SLEEAEAYSRSQLEEQVARSAEYGSSLQSSRSEIADLNVRIQKLRSQILSVKSHCLKLEENIKA 329
Cdd:COG1196 283 LEEAQAEEYELLAElaRLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE 362
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 109096743 330 AEEQG---ELAFQDAKTKLAQLEAALQQAKQDMARQLRKYQELMNVKLALDIEIATYRKLVEGEE 391
Cdd:COG1196 363 AEEALleaEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
254-388 |
9.97e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 38.51 E-value: 9.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 254 EVKAQYDAVAARsLEEAEAYSR-SQLEEQVARSAEYGSSLQSSRSEIADLNVRIQKLRSQILSVKSHCLKLEENIKAAEE 332
Cdd:TIGR02169 208 EKAERYQALLKE-KREYEGYELlKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE 286
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109096743 333 QGELAFQdakTKLAQLEAALQQAK----------QDMARQLRKYQELMNVKLA----LDIEIATYRKLVE 388
Cdd:TIGR02169 287 EEQLRVK---EKIGELEAEIASLErsiaekerelEDAEERLAKLEAEIDKLLAeieeLEREIEEERKRRD 353
|
|
| |
