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Conserved domains on  [gi|392354058|ref|XP_001059724|]
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phospholipase DDHD2 isoform X1 [Rattus norvegicus]

Protein Classification

DDHD family phospholipase( domain architecture ID 11137847)

DDHD family phospholipase similar to Homo sapiens phospholipase DDHD1 that hydrolyzes phosphatidic acid, including 1,2-dioleoyl-sn-phosphatidic acid

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DDHD pfam02862
DDHD domain; The DDHD domain is 180 residues long and contains four conserved residues that ...
 484-687 4.41e-70

DDHD domain; The DDHD domain is 180 residues long and contains four conserved residues that may form a metal binding site. The domain is named after these four residues. This pattern of conservation of metal binding residues is often seen in phosphoesterase domains. This domain is found in retinal degeneration B proteins, as well as a family of probable phospholipases. It has been shown that this domain is found in a longer C terminal region that binds to PYK2 tyrosine kinase. These proteins have been called N-terminal domain-interacting receptor (Nir1, Nir2 and Nir3). This suggests that this region is involved in functionally important interactions in other members of this family.


:

Pssm-ID: 460725  Cd Length: 241  Bit Score: 228.47  E-value: 4.41e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392354058  484 LNYKPEIFFAFGSPIGMFLTVRGLRRIDPNYK-----FPTCKGFFNIYHPFDPVAYRIEPMVVPGVE-FEPMLIPHHKGR 557
Cdd:pfam02862   1 LDFEVENFFLLGSPLGLFLALRGAQIAGRSRSdhiygSPACKQLYNIFHPYDPVAYRLEPLIDPAYSnLKPVLIPYYKKR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392354058  558 KRMHLELREGLTRMSMDLKNN---LLGSLRMAWK-----SFTRAPYPALQASEMAEDTEAESEPSSEKPSDANTEEPPVE 629
Cdd:pfam02862  81 GLRHLELGEGLTRIGAAVGQSvsgLWSSLSSGASlnrslGLSDESSASSADSEQSHERSSEASSASESSLQAQSSSAPSS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392354058  630 VKEEAPIN-------------------------VGMLNGGQRIDYVLQEKPIESfnEYLFALQSHLCYWESEDTVLLVLK 684
Cdd:pfam02862 161 TSSSNGIKeieeteldwseserkadklereeakVRALNPNGRIDYVLQEGALES--QYLSALTSHLSYWESEDVALFLLR 238


                  ...
gi 392354058  685 EIY 687
Cdd:pfam02862 239 QLL 241
SAM_superfamily super family cl15755
SAM (Sterile alpha motif ); SAM (Sterile Alpha Motif) domain is a module consisting of ...
 379-447 1.34e-26

SAM (Sterile alpha motif ); SAM (Sterile Alpha Motif) domain is a module consisting of approximately 70 amino acids. This domain is found in the Fungi/Metazoa group and in a restricted number of bacteria. Proteins with SAM domains are represented by a wide variety of domain architectures and have different intracellular localization, including nucleus, cytoplasm and membranes. SAM domains have diverse functions. They can interact with proteins, RNAs and membrane lipids, contain site of phosphorylation and/or kinase docking site, and play a role in protein homo and hetero dimerization/oligomerization in processes ranging from signal transduction to regulation of transcription. Mutations in SAM domains have been linked to several diseases.


The actual alignment was detected with superfamily member cd09516:

Pssm-ID: 472832  Cd Length: 69  Bit Score: 102.88  E-value: 1.34e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 392354058 379 STAEDLGDVSTLEEELKKLQLSEFVTVFEKEKVDREALALCTDRDLQEMGIPLGPRKKILNHFSATKSS 447
Cdd:cd09516    1 NSVEEQEEPLTLEEDLEKLGLSEYFDTFEKEKIDMESLLLCSESDLKEMGIPMGPRKKLLGFLKDQKAK 69
WWE pfam02825
WWE domain; The WWE domain is named after three of its conserved residues and is predicted to ...
 43-112 1.84e-08

WWE domain; The WWE domain is named after three of its conserved residues and is predicted to mediate specific protein- protein interactions in ubiquitin and ADP ribose conjugation systems.


:

Pssm-ID: 460715 [Multi-domain]  Cd Length: 66  Bit Score: 51.53  E-value: 1.84e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392354058   43 HWFYCkviDSKELWIPFNSEDSQQLEEAHGSGKDCNERVVPTDGGRYDVHLGERMRYAVYwDELPSEVRR 112
Cdd:pfam02825   1 VWEWE---DDNGGWHPYDPEVSSLIEEAYQKGKPSVDLSITTAGFPYTIDFKSMTQTNKD-TGTTRPVRR 66
 
Name Accession Description Interval E-value
DDHD pfam02862
DDHD domain; The DDHD domain is 180 residues long and contains four conserved residues that ...
 484-687 4.41e-70

DDHD domain; The DDHD domain is 180 residues long and contains four conserved residues that may form a metal binding site. The domain is named after these four residues. This pattern of conservation of metal binding residues is often seen in phosphoesterase domains. This domain is found in retinal degeneration B proteins, as well as a family of probable phospholipases. It has been shown that this domain is found in a longer C terminal region that binds to PYK2 tyrosine kinase. These proteins have been called N-terminal domain-interacting receptor (Nir1, Nir2 and Nir3). This suggests that this region is involved in functionally important interactions in other members of this family.


Pssm-ID: 460725  Cd Length: 241  Bit Score: 228.47  E-value: 4.41e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392354058  484 LNYKPEIFFAFGSPIGMFLTVRGLRRIDPNYK-----FPTCKGFFNIYHPFDPVAYRIEPMVVPGVE-FEPMLIPHHKGR 557
Cdd:pfam02862   1 LDFEVENFFLLGSPLGLFLALRGAQIAGRSRSdhiygSPACKQLYNIFHPYDPVAYRLEPLIDPAYSnLKPVLIPYYKKR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392354058  558 KRMHLELREGLTRMSMDLKNN---LLGSLRMAWK-----SFTRAPYPALQASEMAEDTEAESEPSSEKPSDANTEEPPVE 629
Cdd:pfam02862  81 GLRHLELGEGLTRIGAAVGQSvsgLWSSLSSGASlnrslGLSDESSASSADSEQSHERSSEASSASESSLQAQSSSAPSS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392354058  630 VKEEAPIN-------------------------VGMLNGGQRIDYVLQEKPIESfnEYLFALQSHLCYWESEDTVLLVLK 684
Cdd:pfam02862 161 TSSSNGIKeieeteldwseserkadklereeakVRALNPNGRIDYVLQEGALES--QYLSALTSHLSYWESEDVALFLLR 238


                  ...
gi 392354058  685 EIY 687
Cdd:pfam02862 239 QLL 241
SAM_sec23ip-like cd09516
SAM domain of sec23ip-like subfamily; SAM (sterile alpha motif) domain of Sec23ip-like (Sec23 ...
 379-447 1.34e-26

SAM domain of sec23ip-like subfamily; SAM (sterile alpha motif) domain of Sec23ip-like (Sec23 interacting protein) subfamily is a potential protein-protein interaction domain. This group of proteins includes Sec23ip and DDHD2 proteins. All of them contain at least two domains: a SAM domain and a predicted metal-binding domain. For mammalian DDHD2 members of this group, phospholipase activity has been demonstrated. Sec23ip proteins of this group interact with Sec23 proteins via an N-terminal proline-rich region. Members of this subfamily are involved in organization of ER/Golgi intermediate compartment.


Pssm-ID: 188915  Cd Length: 69  Bit Score: 102.88  E-value: 1.34e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 392354058 379 STAEDLGDVSTLEEELKKLQLSEFVTVFEKEKVDREALALCTDRDLQEMGIPLGPRKKILNHFSATKSS 447
Cdd:cd09516    1 NSVEEQEEPLTLEEDLEKLGLSEYFDTFEKEKIDMESLLLCSESDLKEMGIPMGPRKKLLGFLKDQKAK 69
SAM_1 pfam00536
SAM domain (Sterile alpha motif); It has been suggested that SAM is an evolutionarily ...
 383-440 4.98e-09

SAM domain (Sterile alpha motif); It has been suggested that SAM is an evolutionarily conserved protein binding domain that is involved in the regulation of numerous developmental processes in diverse eukaryotes. The SAM domain can potentially function as a protein interaction module through its ability to homo- and heterooligomerise with other SAM domains.


Pssm-ID: 425739  Cd Length: 64  Bit Score: 53.04  E-value: 4.98e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 392354058  383 DLGDVSTLEEELKKLQLSEFVTVFEKEKVDREALALCTDRDLQEMGI-PLGPRKKILNH 440
Cdd:pfam00536   1 DGWSVEDVGEWLESIGLGQYIDSFRAGYIDGDALLQLTEDDLLKLGVtLLGHRKKILYA 59
WWE pfam02825
WWE domain; The WWE domain is named after three of its conserved residues and is predicted to ...
 43-112 1.84e-08

WWE domain; The WWE domain is named after three of its conserved residues and is predicted to mediate specific protein- protein interactions in ubiquitin and ADP ribose conjugation systems.


Pssm-ID: 460715 [Multi-domain]  Cd Length: 66  Bit Score: 51.53  E-value: 1.84e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392354058   43 HWFYCkviDSKELWIPFNSEDSQQLEEAHGSGKDCNERVVPTDGGRYDVHLGERMRYAVYwDELPSEVRR 112
Cdd:pfam02825   1 VWEWE---DDNGGWHPYDPEVSSLIEEAYQKGKPSVDLSITTAGFPYTIDFKSMTQTNKD-TGTTRPVRR 66
SAM smart00454
Sterile alpha motif; Widespread domain in signalling and nuclear proteins. In EPH-related ...
 386-445 3.96e-08

Sterile alpha motif; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.


Pssm-ID: 197735  Cd Length: 68  Bit Score: 50.37  E-value: 3.96e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 392354058   386 DVSTLEEELKKLQLSEFVTVFEKEKVDREALALCTDR-DLQEMGI-PLGPRKKILNHFSATK 445
Cdd:smart00454   5 SPESVADWLESIGLEQYADNFRKNGIDGALLLLLTSEeDLKELGItKLGHRKKILKAIQKLK 66
 
Name Accession Description Interval E-value
DDHD pfam02862
DDHD domain; The DDHD domain is 180 residues long and contains four conserved residues that ...
 484-687 4.41e-70

DDHD domain; The DDHD domain is 180 residues long and contains four conserved residues that may form a metal binding site. The domain is named after these four residues. This pattern of conservation of metal binding residues is often seen in phosphoesterase domains. This domain is found in retinal degeneration B proteins, as well as a family of probable phospholipases. It has been shown that this domain is found in a longer C terminal region that binds to PYK2 tyrosine kinase. These proteins have been called N-terminal domain-interacting receptor (Nir1, Nir2 and Nir3). This suggests that this region is involved in functionally important interactions in other members of this family.


Pssm-ID: 460725  Cd Length: 241  Bit Score: 228.47  E-value: 4.41e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392354058  484 LNYKPEIFFAFGSPIGMFLTVRGLRRIDPNYK-----FPTCKGFFNIYHPFDPVAYRIEPMVVPGVE-FEPMLIPHHKGR 557
Cdd:pfam02862   1 LDFEVENFFLLGSPLGLFLALRGAQIAGRSRSdhiygSPACKQLYNIFHPYDPVAYRLEPLIDPAYSnLKPVLIPYYKKR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392354058  558 KRMHLELREGLTRMSMDLKNN---LLGSLRMAWK-----SFTRAPYPALQASEMAEDTEAESEPSSEKPSDANTEEPPVE 629
Cdd:pfam02862  81 GLRHLELGEGLTRIGAAVGQSvsgLWSSLSSGASlnrslGLSDESSASSADSEQSHERSSEASSASESSLQAQSSSAPSS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392354058  630 VKEEAPIN-------------------------VGMLNGGQRIDYVLQEKPIESfnEYLFALQSHLCYWESEDTVLLVLK 684
Cdd:pfam02862 161 TSSSNGIKeieeteldwseserkadklereeakVRALNPNGRIDYVLQEGALES--QYLSALTSHLSYWESEDVALFLLR 238


                  ...
gi 392354058  685 EIY 687
Cdd:pfam02862 239 QLL 241
SAM_sec23ip-like cd09516
SAM domain of sec23ip-like subfamily; SAM (sterile alpha motif) domain of Sec23ip-like (Sec23 ...
 379-447 1.34e-26

SAM domain of sec23ip-like subfamily; SAM (sterile alpha motif) domain of Sec23ip-like (Sec23 interacting protein) subfamily is a potential protein-protein interaction domain. This group of proteins includes Sec23ip and DDHD2 proteins. All of them contain at least two domains: a SAM domain and a predicted metal-binding domain. For mammalian DDHD2 members of this group, phospholipase activity has been demonstrated. Sec23ip proteins of this group interact with Sec23 proteins via an N-terminal proline-rich region. Members of this subfamily are involved in organization of ER/Golgi intermediate compartment.


Pssm-ID: 188915  Cd Length: 69  Bit Score: 102.88  E-value: 1.34e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 392354058 379 STAEDLGDVSTLEEELKKLQLSEFVTVFEKEKVDREALALCTDRDLQEMGIPLGPRKKILNHFSATKSS 447
Cdd:cd09516    1 NSVEEQEEPLTLEEDLEKLGLSEYFDTFEKEKIDMESLLLCSESDLKEMGIPMGPRKKLLGFLKDQKAK 69
SAM_DDHD2 cd09585
SAM domain of DDHD2; SAM (sterile alpha motif) domain of DDHD2 group is a potential ...
 385-442 1.56e-26

SAM domain of DDHD2; SAM (sterile alpha motif) domain of DDHD2 group is a potential protein-protein interaction domain. DDHD2 proteins contain at least two domains:a SAM domain and a predicted metal-binding domain. Phospholipase A1 activity was demonstrated for the mammalian DDHD2 protein. Mutation of the putative catalytic serine resulted in elimination of activity. Unlike SEC23IP, DDHD2 proteins do not have an N-terminal proline-rich region and correspondingly they are not able to interact with Sec23p/Sec24p complex. Overexpression of DDHD2 is the cause of dispersion of ER/Golgi intermediate compartment and dispersion of tethering proteins located in the Golgi region, leading to aggregation in the endoplasmic reticulum.


Pssm-ID: 188984  Cd Length: 69  Bit Score: 102.91  E-value: 1.56e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 392354058 385 GDVSTLEEELKKLQLSEFVTVFEKEKVDREALALCTDRDLQEMGIPLGPRKKILNHFS 442
Cdd:cd09585    7 GDTPTLEETLKKLGLSEYCDVFEKEKIDLEALALCQERDLKDLGIPLGPRKKILNYIR 64
SAM_sec23ip cd09584
SAM domain of sec23ip; SAM (sterile alpha motif) domain of Sec23ip (Sec23 interacting protein) ...
 379-447 2.88e-19

SAM domain of sec23ip; SAM (sterile alpha motif) domain of Sec23ip (Sec23 interacting protein) group is a potential protein-protein interaction domain. Sec23ip proteins (also known as p125) contain an N-terminal proline-rich region, a central region containing a SAM domain and a C-terminal region with a predicted metal-binding domain. Sec23ip interacts with Sec23p/Sec24p part of COPII-coated vesicles complex involved in protein transport from the ER to the Golgi apparatus. The proline-rich region plays an essential role in this interaction. Overexpression of Sec23ip leads to disorganization of ER/Golgi intermediate compartment.


Pssm-ID: 188983  Cd Length: 69  Bit Score: 82.17  E-value: 2.88e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 392354058 379 STAEDLGDVSTLEEELKKLQLSEFVTVFEKEKVDREALALCTDRDLQEMGIPLGPRKKILNhFSATKSS 447
Cdd:cd09584    1 RLNEEEEDVPSLQSVLEALSLSEYKSTFEKEKIDMESLLMCTVDDLKEMGIPLGPRKKIAN-FVKEKAA 68
SAM_USH1G cd09586
SAM domain of USH1G; SAM (sterile alpha motif) domain of USH1G (Usher syndrome type-1G protein) ...
 386-439 1.12e-15

SAM domain of USH1G; SAM (sterile alpha motif) domain of USH1G (Usher syndrome type-1G protein) proteins (also known as SANS) is a putative protein-protein interaction domain. Members of this group have an N-terminal ankyrin repeat region and C-terminal SAM domain. USH1G is expressed in the hair bundles of the inner ear sensory cells. It can form a functional network with USH1B (myosin VIIa), USH1C (harmonin b), USH1F (protocadherin-related 15), and USH1D (cadherin 23). The SAM domain of the USH1G protein is involved in synergetic interactions with the PDZ domain of harmonin. Such interactions contribute to the stability of harmonin. The network is required for the correct cohesion of the hair bundle. Mutations in the ush1g gene lead to Usher syndrome type 1G. This syndrome is the cause of deaf-blindness in humans.


Pssm-ID: 188985  Cd Length: 66  Bit Score: 71.75  E-value: 1.12e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 392354058 386 DVSTLEEELKKLQLSEFVTVFEKEKVDREALALCTDRDLQEMGIPLGPRKKILN 439
Cdd:cd09586    1 DTSPLEVFLASLSMEEFIAILKREKIDLDALLLCSDNDLKSIHIPLGPRKKILD 54
SAM_USH1G_HARP cd09517
SAM domain of USH1G_HARP family; SAM (sterile alpha motif) domain of USH1G/HARP (Usher ...
 386-439 1.23e-13

SAM domain of USH1G_HARP family; SAM (sterile alpha motif) domain of USH1G/HARP (Usher syndrome type-1G/ Harmonin-interacting Ankyrin Repeat-containing protein) family is a protein-protein interaction domain. Members of this family have an N-terminal ankyrin repeat region and a C-terminal SAM domain. In mammals these proteins can interact via the SAM domain with the PDZ domain of harmonin to form a scaffolding complex that facilitates signal transduction in epithelial and inner ear sensory cells. It was suggested that USH1G and HARP can be tissue specific partners of harmonin. Mutations in ush1g genes lead to Usher syndrome type 1G. This syndrome is the cause of deaf-blindness in humans.


Pssm-ID: 188916  Cd Length: 66  Bit Score: 66.21  E-value: 1.23e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 392354058 386 DVSTLEEELKKLQLSEFVTVFEKEKVDREALALCTDRDLQEMGIPLGPRKKILN 439
Cdd:cd09517    1 ETSPLERFLTSNHLEEYLPVFEREKIDLEALMLLTDEDLQSLKLPLGPRRKLLN 54
SAM_HARP cd09587
SAM domain of HARP subfamily; SAM (sterile alpha motif) domain of HARP (Harmonin-interacting ...
 386-445 1.04e-12

SAM domain of HARP subfamily; SAM (sterile alpha motif) domain of HARP (Harmonin-interacting Ankyrin Repeat-containing) proteins, also known as ANKS4B, is a protein-protein interaction domain. Proteins of this subfamily have an N-terminal ankyrin repeat region and C-terminal SAM. In mouse epithelial tissues, HARP protein interacts with the PDZ domain of harmonin. This scaffolding complex facilitates signal transduction in epithelia. HARP was found co-expressed with harmonin in a number of epithelial cells including pancreatic ductal epithelium, embryonic epithelia of the lung, kidney, salivary glands, and cochlea.


Pssm-ID: 188986  Cd Length: 67  Bit Score: 63.31  E-value: 1.04e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 392354058 386 DVSTLEEELKKLQLSEFVTVFEKEKVDREALALCTDRDLQEMGIPLGPRKKILNHFSATK 445
Cdd:cd09587    1 DATPLEVFLSSQHLEEFLPIFMREQIDLEALMLCSDEDLQNIQMQLGPRKKILSAVARRK 60
SAM_superfamily cd09487
SAM (Sterile alpha motif ); SAM (Sterile Alpha Motif) domain is a module consisting of ...
 394-441 6.02e-10

SAM (Sterile alpha motif ); SAM (Sterile Alpha Motif) domain is a module consisting of approximately 70 amino acids. This domain is found in the Fungi/Metazoa group and in a restricted number of bacteria. Proteins with SAM domains are represented by a wide variety of domain architectures and have different intracellular localization, including nucleus, cytoplasm and membranes. SAM domains have diverse functions. They can interact with proteins, RNAs and membrane lipids, contain site of phosphorylation and/or kinase docking site, and play a role in protein homo and hetero dimerization/oligomerization in processes ranging from signal transduction to regulation of transcription. Mutations in SAM domains have been linked to several diseases.


Pssm-ID: 188886 [Multi-domain]  Cd Length: 56  Bit Score: 55.32  E-value: 6.02e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 392354058 394 LKKLQLSEFVTVFEKEKVDREALALCTDRDLQEMGI-PLGPRKKILNHF 441
Cdd:cd09487    6 LESLGLEQYADLFRKNEIDGDALLLLTDEDLKELGItSPGHRKKILRAI 54
SAM_1 pfam00536
SAM domain (Sterile alpha motif); It has been suggested that SAM is an evolutionarily ...
 383-440 4.98e-09

SAM domain (Sterile alpha motif); It has been suggested that SAM is an evolutionarily conserved protein binding domain that is involved in the regulation of numerous developmental processes in diverse eukaryotes. The SAM domain can potentially function as a protein interaction module through its ability to homo- and heterooligomerise with other SAM domains.


Pssm-ID: 425739  Cd Length: 64  Bit Score: 53.04  E-value: 4.98e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 392354058  383 DLGDVSTLEEELKKLQLSEFVTVFEKEKVDREALALCTDRDLQEMGI-PLGPRKKILNH 440
Cdd:pfam00536   1 DGWSVEDVGEWLESIGLGQYIDSFRAGYIDGDALLQLTEDDLLKLGVtLLGHRKKILYA 59
WWE pfam02825
WWE domain; The WWE domain is named after three of its conserved residues and is predicted to ...
 43-112 1.84e-08

WWE domain; The WWE domain is named after three of its conserved residues and is predicted to mediate specific protein- protein interactions in ubiquitin and ADP ribose conjugation systems.


Pssm-ID: 460715 [Multi-domain]  Cd Length: 66  Bit Score: 51.53  E-value: 1.84e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392354058   43 HWFYCkviDSKELWIPFNSEDSQQLEEAHGSGKDCNERVVPTDGGRYDVHLGERMRYAVYwDELPSEVRR 112
Cdd:pfam02825   1 VWEWE---DDNGGWHPYDPEVSSLIEEAYQKGKPSVDLSITTAGFPYTIDFKSMTQTNKD-TGTTRPVRR 66
SAM smart00454
Sterile alpha motif; Widespread domain in signalling and nuclear proteins. In EPH-related ...
 386-445 3.96e-08

Sterile alpha motif; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.


Pssm-ID: 197735  Cd Length: 68  Bit Score: 50.37  E-value: 3.96e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 392354058   386 DVSTLEEELKKLQLSEFVTVFEKEKVDREALALCTDR-DLQEMGI-PLGPRKKILNHFSATK 445
Cdd:smart00454   5 SPESVADWLESIGLEQYADNFRKNGIDGALLLLLTSEeDLKELGItKLGHRKKILKAIQKLK 66
SAM_ANKS6 cd09518
SAM domain of ANKS6 (or SamCystin) subfamily; SAM (sterile alpha motif) domain of ANKS6 (or ...
 394-438 3.44e-07

SAM domain of ANKS6 (or SamCystin) subfamily; SAM (sterile alpha motif) domain of ANKS6 (or SamCystin) subfamily is a potential protein-protein interaction domain. Proteins of this subfamily have N-terminal ankyrin repeats and a C-terminal SAM domain. They are able to form self-associated complexes and both (SAM and ANK) domains play a role in such interactions. Mutations in Anks6 gene are associated with polycystic kidney disease. They cause formation of renal cysts in rodent models. It was suggested that the ANKS6 protein can interact indirectly (through RNA and protein intermediates) with BICC1, another polycystic kidney disease-associated protein.


Pssm-ID: 188917  Cd Length: 65  Bit Score: 47.95  E-value: 3.44e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 392354058 394 LKKLQLSEFVTVFEKEKVDREALALCTDRDLQEMGIPL-GPRKKIL 438
Cdd:cd09518   12 LRKLSLEKYQPIFEEQEVDMEAFLTLTDGDLKELGIKTdGPRQQIL 57
SAM_ANKS3 cd09519
SAM domain of ANKS3 subfamily; SAM (sterile alpha motif) domain of ANKS3 subfamily is a ...
 388-439 4.03e-05

SAM domain of ANKS3 subfamily; SAM (sterile alpha motif) domain of ANKS3 subfamily is a potential protein-protein interaction domain. Proteins of this subfamily have N-terminal ankyrin repeats and a C-terminal SAM domain. SAM is a widespread domain in signaling proteins. In many cases it mediates homo-dimerization/oligomerization.


Pssm-ID: 188918  Cd Length: 64  Bit Score: 41.71  E-value: 4.03e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 392354058 388 STLEEELKKLQLSEFVTVFEKEKVDREALALCTDRDLQEMGIPL-GPRKKILN 439
Cdd:cd09519    5 KDLSELLEQIGCSKYLPIFEEQDIDLRIFLTLTESDLKEIGITLfGPKRKMTS 57
SAM_BICC1 cd09520
SAM domain of BICC1 (bicaudal) subfamily; SAM (sterile alpha motif) domain of BICC1 (bicaudal) ...
 388-438 8.23e-05

SAM domain of BICC1 (bicaudal) subfamily; SAM (sterile alpha motif) domain of BICC1 (bicaudal) subfamily is a protein-protein interaction domain. Proteins of this group have N-terminal K homology RNA-binding vigilin-like repeats and a C-terminal SAM domain. BICC1 is involved in the regulation of embryonic differentiation. It plays a role in the regulation of Dvl (Dishevelled) signaling, particularly in the correct cilia orientation and nodal flow generation. In Drosophila, disruption of BICC1 can disturb the normal migration direction of the anterior follicle cell of oocytes; the specific function of SAM is to recruit whole protein to the periphery of P-bodies. In mammals, mutations in this gene are associated with polycystic kidney disease and it was suggested that the BICC1 protein can indirectly interact with ANKS6 protein (ANKS6 is also associated with polycystic kidney disease) through some protein and RNA intermediates.


Pssm-ID: 188919  Cd Length: 65  Bit Score: 41.13  E-value: 8.23e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 392354058 388 STLEEELKKLQLSEFVTVFEKEKVDREALALCTDRDLQEMGI-PLGPRKKIL 438
Cdd:cd09520    5 SDLPELLAKLGLEKYIDLFAQQEIDLQTFLTLTDQDLKELGItAFGARRKML 56
SAM_2 pfam07647
SAM domain (Sterile alpha motif);
386-441 1.47e-03

SAM domain (Sterile alpha motif);


Pssm-ID: 429573  Cd Length: 66  Bit Score: 37.63  E-value: 1.47e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 392354058  386 DVSTLEEELKKLQLSEFVTVFEKEKVD-REALALCTDRDLQEMGIPL-GPRKKILNHF 441
Cdd:pfam07647   5 SLESVADWLRSIGLEQYTDNFRDQGITgAELLLRLTLEDLKRLGITSvGHRRKILKKI 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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