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Conserved domains on  [gi|696410559|ref|WP_032981504|]
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MULTISPECIES: HD domain-containing protein [Rhizobium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SpoT super family cl33835
(p)ppGpp synthase/hydrolase, HD superfamily [Signal transduction mechanisms, Transcription];
4-66 1.16e-06

(p)ppGpp synthase/hydrolase, HD superfamily [Signal transduction mechanisms, Transcription];


The actual alignment was detected with superfamily member COG0317:

Pssm-ID: 440086 [Multi-domain]  Cd Length: 722  Bit Score: 46.30  E-value: 1.16e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 696410559   4 LDHAIQIALTAHEGKADKTGRPFFEHCQRVALLVS----GDETRTVAYLHDVVEKGsGWTLDRLREE 66
Cdd:COG0317   32 IRRAYEFAEEAHEGQKRKSGEPYITHPLAVAEILAelglDAETIAAALLHDVVEDT-DVTLEEIEEE 97
RhaD super family cl27662
Rhamnose utilisation protein RhaD, predicted bifunctional aldolase and dehydrogenase ...
 54-92 4.52e-03

Rhamnose utilisation protein RhaD, predicted bifunctional aldolase and dehydrogenase [Carbohydrate transport and metabolism];


The actual alignment was detected with superfamily member COG3347:

Pssm-ID: 442576 [Multi-domain]  Cd Length: 674  Bit Score: 36.05  E-value: 4.52e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 696410559  54 KGSGWTLDRLREEGFPPAIISAVNALTRRPDEPDDDFVR 92
Cdd:COG3347   62 KGSGGDLATIEPAGFAALRLDPLRALRELGVLSDDEMVN 100
 
Name Accession Description Interval E-value
SpoT COG0317
(p)ppGpp synthase/hydrolase, HD superfamily [Signal transduction mechanisms, Transcription];
4-66 1.16e-06

(p)ppGpp synthase/hydrolase, HD superfamily [Signal transduction mechanisms, Transcription];


Pssm-ID: 440086 [Multi-domain]  Cd Length: 722  Bit Score: 46.30  E-value: 1.16e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 696410559   4 LDHAIQIALTAHEGKADKTGRPFFEHCQRVALLVS----GDETRTVAYLHDVVEKGsGWTLDRLREE 66
Cdd:COG0317   32 IRRAYEFAEEAHEGQKRKSGEPYITHPLAVAEILAelglDAETIAAALLHDVVEDT-DVTLEEIEEE 97
RhaD COG3347
Rhamnose utilisation protein RhaD, predicted bifunctional aldolase and dehydrogenase ...
 54-92 4.52e-03

Rhamnose utilisation protein RhaD, predicted bifunctional aldolase and dehydrogenase [Carbohydrate transport and metabolism];


Pssm-ID: 442576 [Multi-domain]  Cd Length: 674  Bit Score: 36.05  E-value: 4.52e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 696410559  54 KGSGWTLDRLREEGFPPAIISAVNALTRRPDEPDDDFVR 92
Cdd:COG3347   62 KGSGGDLATIEPAGFAALRLDPLRALRELGVLSDDEMVN 100
 
Name Accession Description Interval E-value
SpoT COG0317
(p)ppGpp synthase/hydrolase, HD superfamily [Signal transduction mechanisms, Transcription];
4-66 1.16e-06

(p)ppGpp synthase/hydrolase, HD superfamily [Signal transduction mechanisms, Transcription];


Pssm-ID: 440086 [Multi-domain]  Cd Length: 722  Bit Score: 46.30  E-value: 1.16e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 696410559   4 LDHAIQIALTAHEGKADKTGRPFFEHCQRVALLVS----GDETRTVAYLHDVVEKGsGWTLDRLREE 66
Cdd:COG0317   32 IRRAYEFAEEAHEGQKRKSGEPYITHPLAVAEILAelglDAETIAAALLHDVVEDT-DVTLEEIEEE 97
RhaD COG3347
Rhamnose utilisation protein RhaD, predicted bifunctional aldolase and dehydrogenase ...
 54-92 4.52e-03

Rhamnose utilisation protein RhaD, predicted bifunctional aldolase and dehydrogenase [Carbohydrate transport and metabolism];


Pssm-ID: 442576 [Multi-domain]  Cd Length: 674  Bit Score: 36.05  E-value: 4.52e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 696410559  54 KGSGWTLDRLREEGFPPAIISAVNALTRRPDEPDDDFVR 92
Cdd:COG3347   62 KGSGGDLATIEPAGFAALRLDPLRALRELGVLSDDEMVN 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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