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Conserved domains on  [gi|644966502|ref|WP_025387257|]
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PepSY domain-containing protein [Corynebacterium casei]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PiuB super family cl43805
PepSY-associated TM region [Function unknown];
16-81 2.14e-15

PepSY-associated TM region [Function unknown];


The actual alignment was detected with superfamily member COG3182:

Pssm-ID: 442415 [Multi-domain]  Cd Length: 379  Bit Score: 68.84  E-value: 2.14e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 644966502  16 VIYRLHSVAGVFVAPLLVIAALSGFLYTFAPSLENFVYRDAITASSTEAAQPLEEQIEAAQAVHPD 81
Cdd:COG3182    6 LLRRLHLWLGLLAGLFLLILALTGALLVFKPEIDRWLNPELLAVAPGGPPLSLDELLAAARAAYPG 71
 
Name Accession Description Interval E-value
PiuB COG3182
PepSY-associated TM region [Function unknown];
16-81 2.14e-15

PepSY-associated TM region [Function unknown];


Pssm-ID: 442415 [Multi-domain]  Cd Length: 379  Bit Score: 68.84  E-value: 2.14e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 644966502  16 VIYRLHSVAGVFVAPLLVIAALSGFLYTFAPSLENFVYRDAITASSTEAAQPLEEQIEAAQAVHPD 81
Cdd:COG3182    6 LLRRLHLWLGLLAGLFLLILALTGALLVFKPEIDRWLNPELLAVAPGGPPLSLDELLAAARAAYPG 71
PepSY_TM pfam03929
PepSY-associated TM region; The PepSY_TM family is so named because it is an alignment of up ...
 19-79 1.42e-09

PepSY-associated TM region; The PepSY_TM family is so named because it is an alignment of up to five transmembranes helices found in bacterial species some of which carry a nested PepSY domain, pfam03413.


Pssm-ID: 427595 [Multi-domain]  Cd Length: 355  Bit Score: 52.57  E-value: 1.42e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 644966502   19 RLHSVAGVFVAPLLVIAALSGFLYTFAPSLENFVYRDAITASSTEAAQPLEEQIEAAQAVH 79
Cdd:pfam03929   2 RLHFWAGLLVGPFLLILALTGALLVFRPEIDRWLNPELLTVPPPGAPAPLAALRAPAAAAA 62
 
Name Accession Description Interval E-value
PiuB COG3182
PepSY-associated TM region [Function unknown];
16-81 2.14e-15

PepSY-associated TM region [Function unknown];


Pssm-ID: 442415 [Multi-domain]  Cd Length: 379  Bit Score: 68.84  E-value: 2.14e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 644966502  16 VIYRLHSVAGVFVAPLLVIAALSGFLYTFAPSLENFVYRDAITASSTEAAQPLEEQIEAAQAVHPD 81
Cdd:COG3182    6 LLRRLHLWLGLLAGLFLLILALTGALLVFKPEIDRWLNPELLAVAPGGPPLSLDELLAAARAAYPG 71
PepSY_TM pfam03929
PepSY-associated TM region; The PepSY_TM family is so named because it is an alignment of up ...
 19-79 1.42e-09

PepSY-associated TM region; The PepSY_TM family is so named because it is an alignment of up to five transmembranes helices found in bacterial species some of which carry a nested PepSY domain, pfam03413.


Pssm-ID: 427595 [Multi-domain]  Cd Length: 355  Bit Score: 52.57  E-value: 1.42e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 644966502   19 RLHSVAGVFVAPLLVIAALSGFLYTFAPSLENFVYRDAITASSTEAAQPLEEQIEAAQAVH 79
Cdd:pfam03929   2 RLHFWAGLLVGPFLLILALTGALLVFRPEIDRWLNPELLTVPPPGAPAPLAALRAPAAAAA 62
PiuB COG3182
PepSY-associated TM region [Function unknown];
8-81 5.19e-05

PepSY-associated TM region [Function unknown];


Pssm-ID: 442415 [Multi-domain]  Cd Length: 379  Bit Score: 39.56  E-value: 5.19e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644966502   8 KKSGGAYGVIYRLHSVAGVFVAPLLVIAALSGFLYTFAPSLENFVYR-------------DAITASSTEAAQPLEEQIEA 74
Cdd:COG3182  173 RWGAGGRRFWLDLHNVLGVWALPFLLVIALTGLVWSLADWLRAALAAlgggtpaaeaeppASASAPAGAPPLSLDAALAA 252


                 ....*..
gi 644966502  75 AQAVHPD 81
Cdd:COG3182  253 ARAALPD 259
PepSY_TM pfam03929
PepSY-associated TM region; The PepSY_TM family is so named because it is an alignment of up ...
 6-81 4.69e-04

PepSY-associated TM region; The PepSY_TM family is so named because it is an alignment of up to five transmembranes helices found in bacterial species some of which carry a nested PepSY domain, pfam03413.


Pssm-ID: 427595 [Multi-domain]  Cd Length: 355  Bit Score: 36.78  E-value: 4.69e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 644966502    6 PTKKSGGAYGVIYRLHSVAGVFVAPLLVIAALSGFLYTF-APSLENFVYRDAITASSTEAAQPLEEQIEAAQAVHPD 81
Cdd:pfam03929 164 FRFRPGGGRRFWLDLHNVLGVWALPFLLVLALTGLTWSLaAVWGAAVTALFSAGAAAPAAPAAPAPPAAAAAAPASA 240
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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