|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11067 |
PRK11067 |
outer membrane protein assembly factor YaeT; Provisional |
1-804 |
0e+00 |
|
outer membrane protein assembly factor YaeT; Provisional
Pssm-ID: 236834 [Multi-domain] Cd Length: 803 Bit Score: 1546.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 1 MAIKRILFASLLATSVSANGAENFVVQDIEIDGLQRVALGAALLKMPVRVGDTIGQGDVAEIIRALYASGNFEDVRVLRD 80
Cdd:PRK11067 1 MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 81 GEVLVVQVKERPTIASISFSGNKAIKDEQLQENLNASGIREGEALDRTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPR 160
Cdd:PRK11067 81 GNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLPR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 161 NRSDLKFVFTEGVSAKIQQINFIGNEVFSDEELLSRFNLNVDVPWWNFLADEKYQKQVLAGDIEALKSFYLDRGYLKFNV 240
Cdd:PRK11067 161 NRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 241 DSTQVAISPDKKGVYITLGLEEGEVYTVKDVKFRGDLVGEQDAFESMVPFDSNETYNGSLVTSMEEGVKRVLGESGYAYP 320
Cdd:PRK11067 241 DSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 321 QVNTIPEFDDENKEVSLVVNVDPGNRIYVRDIRFTGNNATKDEVLRREMRQMEGSWLNSKSIETGKTRLNRLGYFENVEV 400
Cdd:PRK11067 321 RVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 401 QTVRVPGSDDQVDLVYSVKEANSGSVNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMMNDYQKNISLDYRDPYWNL 480
Cdd:PRK11067 401 DTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTV 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 481 DGVSLGGKIFYDEFEASEAGIVDYTNQSYGGSLTWGFPFDELNRFEFGVGYTHNKIGNLSPYLQVEQFLRAQADNID--S 558
Cdd:PRK11067 481 DGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGENPSsdS 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 559 DGSLNTNDFDINISWTRNNLNRGYFPTAGNHQRAFYKMTVPGSDVQYFKMQYDVRQYMPLTEKHEFTLLFRGRLGYGNGY 638
Cdd:PRK11067 561 DNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDGL 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 639 GETNgndnlFPFYENYYAGGFTSLRGFGSNSVGPKAVYRDY-----SGSNNGADTATDDAVGGNAVALASLELIVPTPFA 713
Cdd:PRK11067 641 GGKE-----MPFYENFYAGGSSTVRGFQSNTIGPKAVYYPGqasnyTQDGAKDLCKSDDAVGGNAMAVASLELITPTPFI 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 714 SDEVRNQIRTSIFFDMASVWDTEFDYRDSGAeygDKYYYDYSDPTNYRSSYGAALQWMSPMGPLVFSLAKPIKKYDGDDE 793
Cdd:PRK11067 716 SDKYANSVRTSFFWDMGTVWDTNWDNTAYTR---AAGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKA 792
|
810
....*....|.
gi 520915879 794 EFFTFTIGRTF 804
Cdd:PRK11067 793 EQFQFNIGKTW 803
|
|
| OM_YaeT |
TIGR03303 |
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ... |
24-804 |
0e+00 |
|
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274514 [Multi-domain] Cd Length: 741 Bit Score: 931.22 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 24 FVVQDIEIDGLQRVALGAALLKMPVRVGDTIGQGDVAEIIRALYASGNFEDVRVLRDGEVLVVQVKERPTIASISFSGNK 103
Cdd:TIGR03303 1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 104 AIKDEQLQENLNasGIREGEALDRTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPRNRSDLKFVFTEGVSAKIQQINFI 183
Cdd:TIGR03303 81 EIKKDQLKKALV--GIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 184 GNEVFSDEELLSRFNLNVDVPWWNFLADEKYQKQVLAGDIEALKSFYLDRGYLKFNVDSTQVAISPDKKGVYITLGLEEG 263
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 264 EVYTVKDVKFRGDLVGEQDAFESMVPFDSNETYNGSLVTSMEEGVKRVLGESGYAYPQVNTIPEFDDENKEVSLVVNVDP 343
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDP 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 344 GNRIYVRDIRFTGNNATKDEVLRREMRQMEGSWLNSKSIETGKTRLNRLGYFENVEVQTVRVpGSDDQVDLVYSVKEANS 423
Cdd:TIGR03303 319 GKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPV-GSPDQVDLNVKVKEQPT 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 424 GSVNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMMNDYQKNISLDYRDPYWNLDGVSLGGKIFYDEFEASEAGIVD 503
Cdd:TIGR03303 398 GSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFSD 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 504 YTNQSYGGSLTWGFPFDELNRFEFGVGYTHNKIGNLS-PYLQVEQFLRAQADnidsdgslNTNDFDINISWTRNNLNRGY 582
Cdd:TIGR03303 478 YKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKDDSdSDSSASYFIKEQGG--------KFIDSSLSYGWSYDTLDSGY 549
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 583 FPTAGNHQRAFYKMTVPGSDVQYFKMQYDVRQYMPLTEKHEFTLLFRGRLGYGNGYGETNgndnlFPFYENYYAGGFTSL 662
Cdd:TIGR03303 550 FPTKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVLSLRGRLGYGNGYGGKD-----LPFYERFYAGGIGSV 624
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 663 RGFGSNSVGPKAVYrdysgsnngadtATDDAVGGNAVALASLELIVPTPFASDEvrNQIRTSIFFDMASVWDTEFDYRDs 742
Cdd:TIGR03303 625 RGFESNGIGPRDIN------------DSGDSIGGNAMATANVELIFPLPFLPED--NGLRGSVFFDAGNVWGTDQKKEG- 689
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 520915879 743 gaeygdkyyyDYSDPTNYRSSYGAALQWMSPMGPLVFSLAKPIKKYDGDDEEFFTFTIGRTF 804
Cdd:TIGR03303 690 ----------DYSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
26-804 |
0e+00 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 700.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 26 VQDIEIDGLQRVALGAALLKMPVRVGDTIGQGDVAEIIRALYASGNFEDVRVLRDGEVLVVQVKERPTIASISFSGNKAI 105
Cdd:COG4775 1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 106 KDEQLQENLnasGIREGEALDRTTLSNIEKGLEDFYYSVGKYNATVKavVTPlPRNRSDLKFVFTEGVSAKIQQINFIGN 185
Cdd:COG4775 81 KDEDLKKEL---GLKEGRVFDRALLERAEQELKEQYRSKGYYNAKVT--ITP-ERNRVDLTFEIDEGEKAKIKKINFVGN 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 186 EVFSDEELLSRFNLNVDVPWWNflaDEKYQKQVLAGDIEALKSFYLDRGYLKFNVDSTQVAISPDKKGVYITLGLEEGEV 265
Cdd:COG4775 155 KAFSDKELRKVLKTKESGWLTK---SDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQ 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 266 YTVKDVKFRGDLVGEqDAFESMVPFDSNETYNGSLVTSMEEGVKRVLGESGYAYPQVNTIPEFDDENKEVSLVVNVDPGN 345
Cdd:COG4775 232 YKVGDIKFEGNLVDE-EELRKLLKIKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGP 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 346 RIYVRDIRFTGNNATKDEVLRREMRQMEGSWLNSKSIETGKTRLNRLGYFENVEVQTVRVPGSDDQVDLVYSVKEANSGS 425
Cdd:COG4775 311 RVYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTGS 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 426 VNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMMNDYQKNISLDYRDPYWNLDGVSLGGKIFYDEFEASEagIVDYT 505
Cdd:COG4775 391 LSLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDASD--YSSYD 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 506 NQSYGGSLTWGFPFDELNRFEFGVGYTHNKIGNLSPYLQVEQflraqadnidsDGSLNTNDFDINISWTRNNLNRGYFPT 585
Cdd:COG4775 469 LKRTGGGLGLGYPLSEDLRLSLGYGYERTDISDVDSSPDYLP-----------DQNGSSNTSSLGLGLTYDTRDNPLFPT 537
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 586 AGNHQRAFYKMTVP--GSDVQYFKMQYDVRQYMPLTEKHefTLLFRGRLGYGNGYGETngndnlFPFYENYYAGGFTSLR 663
Cdd:COG4775 538 RGSYLSLSLEFAGPylGGDLEYYKLSADARYYFPLGKKL--VLALRAEAGYLGGYGKD------LPFFERFYLGGFGSLR 609
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 664 GFGSNSVGPKavyrdysgsnngadtatddaVGGNAVALASLELIVPTPFASDevrNQIRTSIFFDMASVWDTEFDYrdsg 743
Cdd:COG4775 610 GYEENSLGPR--------------------LGGNAYLLGSAELRFPLPLPPS---AGLRGALFVDAGNVWDSGDDF---- 662
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 520915879 744 aeygdkyyydysDPTNYRSSYGAALQWMSPMGPLVFSLAKPIKKYDGDDEEFFTFTIGRTF 804
Cdd:COG4775 663 ------------DLSDLRYSAGVGLRWDTPLGPLRLDYAYPLDKEPGDSGQRFHFSIGTRF 711
|
|
| Omp85 |
pfam01103 |
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ... |
448-800 |
6.12e-100 |
|
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Pssm-ID: 460065 [Multi-domain] Cd Length: 319 Bit Score: 312.37 E-value: 6.12e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 448 NFLGSGNRVGVNAMMNDYQKNISLDYRDPYWNLDGVSLGGKIFYDEFEASEAGIVDYTNQSYGGSLTWGFPFDELNRFEF 527
Cdd:pfam01103 1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDRDSSDSYRITTYGFSVSLGRPITENWSLSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 528 GVGYTHNKIGNLSPYLQVEQFLraqadnIDSDGSLNTNDFDINISWTRNNLNRGYFPTAGNHQRAFYKMTV--PGSDVQY 605
Cdd:pfam01103 81 GLGYQHNKILDESGSPNIRNYY------PSASGTGKSLTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGpfLGGDVSY 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 606 FKMQYDVRQYMPLTEKHEFTLLFRGRLGYGNGYGETNgndnlFPFYENYYAGGFTSLRGFGSNSVGPKAvyrdysgsnng 685
Cdd:pfam01103 155 YKLTADGSYYYPLGKDDSFVLSARVALGYLDGYGTKD-----LPFYERFYAGGSNSVRGFEYGGIGPRD----------- 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 686 adtATDDAVGGNAVALASLELIVPTPFASDevrNQIRTSIFFDMASVWDTEFDYRDSgaeygdkyYYDYSDPTNYRSSYG 765
Cdd:pfam01103 219 ---EDGDALGGNSYVVASLELRFPLPFVPK---QSVRGVLFFDAGNVWNTGSTDPGS--------SRGARSKAGIRASVG 284
|
330 340 350
....*....|....*....|....*....|....*
gi 520915879 766 AALQWMSPMGPLVFSLAKPIKKYDGDDEEFFTFTI 800
Cdd:pfam01103 285 VGLRWLSPLGPLRFDYAFPLKKPDGDETQRFQFGI 319
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11067 |
PRK11067 |
outer membrane protein assembly factor YaeT; Provisional |
1-804 |
0e+00 |
|
outer membrane protein assembly factor YaeT; Provisional
Pssm-ID: 236834 [Multi-domain] Cd Length: 803 Bit Score: 1546.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 1 MAIKRILFASLLATSVSANGAENFVVQDIEIDGLQRVALGAALLKMPVRVGDTIGQGDVAEIIRALYASGNFEDVRVLRD 80
Cdd:PRK11067 1 MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 81 GEVLVVQVKERPTIASISFSGNKAIKDEQLQENLNASGIREGEALDRTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPR 160
Cdd:PRK11067 81 GNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLPR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 161 NRSDLKFVFTEGVSAKIQQINFIGNEVFSDEELLSRFNLNVDVPWWNFLADEKYQKQVLAGDIEALKSFYLDRGYLKFNV 240
Cdd:PRK11067 161 NRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 241 DSTQVAISPDKKGVYITLGLEEGEVYTVKDVKFRGDLVGEQDAFESMVPFDSNETYNGSLVTSMEEGVKRVLGESGYAYP 320
Cdd:PRK11067 241 DSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 321 QVNTIPEFDDENKEVSLVVNVDPGNRIYVRDIRFTGNNATKDEVLRREMRQMEGSWLNSKSIETGKTRLNRLGYFENVEV 400
Cdd:PRK11067 321 RVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 401 QTVRVPGSDDQVDLVYSVKEANSGSVNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMMNDYQKNISLDYRDPYWNL 480
Cdd:PRK11067 401 DTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTV 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 481 DGVSLGGKIFYDEFEASEAGIVDYTNQSYGGSLTWGFPFDELNRFEFGVGYTHNKIGNLSPYLQVEQFLRAQADNID--S 558
Cdd:PRK11067 481 DGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGENPSsdS 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 559 DGSLNTNDFDINISWTRNNLNRGYFPTAGNHQRAFYKMTVPGSDVQYFKMQYDVRQYMPLTEKHEFTLLFRGRLGYGNGY 638
Cdd:PRK11067 561 DNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDGL 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 639 GETNgndnlFPFYENYYAGGFTSLRGFGSNSVGPKAVYRDY-----SGSNNGADTATDDAVGGNAVALASLELIVPTPFA 713
Cdd:PRK11067 641 GGKE-----MPFYENFYAGGSSTVRGFQSNTIGPKAVYYPGqasnyTQDGAKDLCKSDDAVGGNAMAVASLELITPTPFI 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 714 SDEVRNQIRTSIFFDMASVWDTEFDYRDSGAeygDKYYYDYSDPTNYRSSYGAALQWMSPMGPLVFSLAKPIKKYDGDDE 793
Cdd:PRK11067 716 SDKYANSVRTSFFWDMGTVWDTNWDNTAYTR---AAGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKA 792
|
810
....*....|.
gi 520915879 794 EFFTFTIGRTF 804
Cdd:PRK11067 793 EQFQFNIGKTW 803
|
|
| OM_YaeT |
TIGR03303 |
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ... |
24-804 |
0e+00 |
|
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274514 [Multi-domain] Cd Length: 741 Bit Score: 931.22 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 24 FVVQDIEIDGLQRVALGAALLKMPVRVGDTIGQGDVAEIIRALYASGNFEDVRVLRDGEVLVVQVKERPTIASISFSGNK 103
Cdd:TIGR03303 1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 104 AIKDEQLQENLNasGIREGEALDRTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPRNRSDLKFVFTEGVSAKIQQINFI 183
Cdd:TIGR03303 81 EIKKDQLKKALV--GIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 184 GNEVFSDEELLSRFNLNVDVPWWNFLADEKYQKQVLAGDIEALKSFYLDRGYLKFNVDSTQVAISPDKKGVYITLGLEEG 263
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 264 EVYTVKDVKFRGDLVGEQDAFESMVPFDSNETYNGSLVTSMEEGVKRVLGESGYAYPQVNTIPEFDDENKEVSLVVNVDP 343
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDP 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 344 GNRIYVRDIRFTGNNATKDEVLRREMRQMEGSWLNSKSIETGKTRLNRLGYFENVEVQTVRVpGSDDQVDLVYSVKEANS 423
Cdd:TIGR03303 319 GKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPV-GSPDQVDLNVKVKEQPT 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 424 GSVNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMMNDYQKNISLDYRDPYWNLDGVSLGGKIFYDEFEASEAGIVD 503
Cdd:TIGR03303 398 GSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFSD 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 504 YTNQSYGGSLTWGFPFDELNRFEFGVGYTHNKIGNLS-PYLQVEQFLRAQADnidsdgslNTNDFDINISWTRNNLNRGY 582
Cdd:TIGR03303 478 YKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKDDSdSDSSASYFIKEQGG--------KFIDSSLSYGWSYDTLDSGY 549
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 583 FPTAGNHQRAFYKMTVPGSDVQYFKMQYDVRQYMPLTEKHEFTLLFRGRLGYGNGYGETNgndnlFPFYENYYAGGFTSL 662
Cdd:TIGR03303 550 FPTKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVLSLRGRLGYGNGYGGKD-----LPFYERFYAGGIGSV 624
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 663 RGFGSNSVGPKAVYrdysgsnngadtATDDAVGGNAVALASLELIVPTPFASDEvrNQIRTSIFFDMASVWDTEFDYRDs 742
Cdd:TIGR03303 625 RGFESNGIGPRDIN------------DSGDSIGGNAMATANVELIFPLPFLPED--NGLRGSVFFDAGNVWGTDQKKEG- 689
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 520915879 743 gaeygdkyyyDYSDPTNYRSSYGAALQWMSPMGPLVFSLAKPIKKYDGDDEEFFTFTIGRTF 804
Cdd:TIGR03303 690 ----------DYSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
26-804 |
0e+00 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 700.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 26 VQDIEIDGLQRVALGAALLKMPVRVGDTIGQGDVAEIIRALYASGNFEDVRVLRDGEVLVVQVKERPTIASISFSGNKAI 105
Cdd:COG4775 1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 106 KDEQLQENLnasGIREGEALDRTTLSNIEKGLEDFYYSVGKYNATVKavVTPlPRNRSDLKFVFTEGVSAKIQQINFIGN 185
Cdd:COG4775 81 KDEDLKKEL---GLKEGRVFDRALLERAEQELKEQYRSKGYYNAKVT--ITP-ERNRVDLTFEIDEGEKAKIKKINFVGN 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 186 EVFSDEELLSRFNLNVDVPWWNflaDEKYQKQVLAGDIEALKSFYLDRGYLKFNVDSTQVAISPDKKGVYITLGLEEGEV 265
Cdd:COG4775 155 KAFSDKELRKVLKTKESGWLTK---SDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQ 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 266 YTVKDVKFRGDLVGEqDAFESMVPFDSNETYNGSLVTSMEEGVKRVLGESGYAYPQVNTIPEFDDENKEVSLVVNVDPGN 345
Cdd:COG4775 232 YKVGDIKFEGNLVDE-EELRKLLKIKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGP 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 346 RIYVRDIRFTGNNATKDEVLRREMRQMEGSWLNSKSIETGKTRLNRLGYFENVEVQTVRVPGSDDQVDLVYSVKEANSGS 425
Cdd:COG4775 311 RVYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTGS 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 426 VNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMMNDYQKNISLDYRDPYWNLDGVSLGGKIFYDEFEASEagIVDYT 505
Cdd:COG4775 391 LSLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDASD--YSSYD 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 506 NQSYGGSLTWGFPFDELNRFEFGVGYTHNKIGNLSPYLQVEQflraqadnidsDGSLNTNDFDINISWTRNNLNRGYFPT 585
Cdd:COG4775 469 LKRTGGGLGLGYPLSEDLRLSLGYGYERTDISDVDSSPDYLP-----------DQNGSSNTSSLGLGLTYDTRDNPLFPT 537
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 586 AGNHQRAFYKMTVP--GSDVQYFKMQYDVRQYMPLTEKHefTLLFRGRLGYGNGYGETngndnlFPFYENYYAGGFTSLR 663
Cdd:COG4775 538 RGSYLSLSLEFAGPylGGDLEYYKLSADARYYFPLGKKL--VLALRAEAGYLGGYGKD------LPFFERFYLGGFGSLR 609
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 664 GFGSNSVGPKavyrdysgsnngadtatddaVGGNAVALASLELIVPTPFASDevrNQIRTSIFFDMASVWDTEFDYrdsg 743
Cdd:COG4775 610 GYEENSLGPR--------------------LGGNAYLLGSAELRFPLPLPPS---AGLRGALFVDAGNVWDSGDDF---- 662
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 520915879 744 aeygdkyyydysDPTNYRSSYGAALQWMSPMGPLVFSLAKPIKKYDGDDEEFFTFTIGRTF 804
Cdd:COG4775 663 ------------DLSDLRYSAGVGLRWDTPLGPLRLDYAYPLDKEPGDSGQRFHFSIGTRF 711
|
|
| Omp85 |
pfam01103 |
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ... |
448-800 |
6.12e-100 |
|
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Pssm-ID: 460065 [Multi-domain] Cd Length: 319 Bit Score: 312.37 E-value: 6.12e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 448 NFLGSGNRVGVNAMMNDYQKNISLDYRDPYWNLDGVSLGGKIFYDEFEASEAGIVDYTNQSYGGSLTWGFPFDELNRFEF 527
Cdd:pfam01103 1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDRDSSDSYRITTYGFSVSLGRPITENWSLSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 528 GVGYTHNKIGNLSPYLQVEQFLraqadnIDSDGSLNTNDFDINISWTRNNLNRGYFPTAGNHQRAFYKMTV--PGSDVQY 605
Cdd:pfam01103 81 GLGYQHNKILDESGSPNIRNYY------PSASGTGKSLTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGpfLGGDVSY 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 606 FKMQYDVRQYMPLTEKHEFTLLFRGRLGYGNGYGETNgndnlFPFYENYYAGGFTSLRGFGSNSVGPKAvyrdysgsnng 685
Cdd:pfam01103 155 YKLTADGSYYYPLGKDDSFVLSARVALGYLDGYGTKD-----LPFYERFYAGGSNSVRGFEYGGIGPRD----------- 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 686 adtATDDAVGGNAVALASLELIVPTPFASDevrNQIRTSIFFDMASVWDTEFDYRDSgaeygdkyYYDYSDPTNYRSSYG 765
Cdd:pfam01103 219 ---EDGDALGGNSYVVASLELRFPLPFVPK---QSVRGVLFFDAGNVWNTGSTDPGS--------SRGARSKAGIRASVG 284
|
330 340 350
....*....|....*....|....*....|....*
gi 520915879 766 AALQWMSPMGPLVFSLAKPIKKYDGDDEEFFTFTI 800
Cdd:pfam01103 285 VGLRWLSPLGPLRFDYAFPLKKPDGDETQRFQFGI 319
|
|
| TamA |
COG0729 |
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; ... |
223-804 |
9.64e-54 |
|
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440493 [Multi-domain] Cd Length: 574 Bit Score: 195.89 E-value: 9.64e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 223 IEALKSFyldrGYlkFNVdSTQVAISPDKKGVYITLGLEEGEVYTVKDVKFRGDLVGEQDAFESMV----PFDSNETYNG 298
Cdd:COG0729 65 RAALRAE----GY--YSP-TVTIRLDGRDGPWTVTITVDPGPPVRIGKVDIELLGEAAQDPARRKLlaawPLKPGDPLRH 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 299 SLVTSMEEGVKRVLGESGYAYPQV-NTIPEFDDENKEVSLVVNVDPGNRIYVRDIRFTGNNATKDEVLRREMRQMEGSWL 377
Cdd:COG0729 138 GAYEAAKSALLDALRERGYPDARFtQSRAEVDPATNTADVTLTVDSGPRYRFGEITVEGLSRVPEDFLRRLAPFKPGEPY 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 378 NSKSIETGKTRLNRLGYFENVEVQTVRVPGSDDQVDLVYSVKEANSGSVNFGVGYGTESGVSFQVGLQQDNFLGSGNRVG 457
Cdd:COG0729 218 SPDKLLELQQRLQSTGYFSSVRVTPDEDPAPDGTVPVTVTLTERKRRRIGFGLGYSTDTGPRLSAGWEHRNLFGRGHRLR 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 458 VNAMMNDYQKNISLDYRDPYW--NLDGVSLGGKIFYDEFEASEAgivdytnqsyggsltwgfpfdelNRFEFGVGYTHnk 535
Cdd:COG0729 298 LELELSQPEQSLSADYRIPPLfpLGQYLSLGAGLEREDTDDYDS-----------------------RSLTLGAGRTR-- 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 536 igNLSPYLQVEQFLRAQADNI-DSDGSLNTNDFDINISWTRNNLNRGYFPTAGNHQRAFYKMTVP--GSDVQYFKMQYDV 612
Cdd:COG0729 353 --RLSDGWTRSLGLRLLYERFtDGDDDRTYTLLSPGLSWTRDRRDDPLDPTRGYRLSLELGPGSKllGSDTSFLRLYARG 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 613 RQYMPLTEKHefTLLFRGRLGYgngygeTNGND-NLFPFYENYYAGGFTSLRGFGSNSVGPKavyrdysgsnngadTATD 691
Cdd:COG0729 431 SWYRPLGERH--RLAGRAELGA------ILGADfDDVPPSLRFFAGGDGSVRGYGYQSLGPR--------------DGDG 488
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 692 DAVGGNAVALASLELIVPtpfasdeVRNQIRTSIFFDMASVWDTEFDYrdsgaeygdkyyydysdptNYRSSYGAALQWM 771
Cdd:COG0729 489 DVIGGRSLAVGSLEYRYR-------VTENWGLAVFVDAGNAFNDFPFS-------------------DLKVGAGLGLRWY 542
|
570 580 590
....*....|....*....|....*....|...
gi 520915879 772 SPMGPLVFSLAKPIKKYDGDDEEFFtFTIGRTF 804
Cdd:COG0729 543 SPVGPIRLDLAYPLNDRDDSSFRLY-ISLGQAF 574
|
|
| FhaC |
COG2831 |
Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular ... |
261-804 |
6.60e-21 |
|
Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442079 [Multi-domain] Cd Length: 547 Bit Score: 97.33 E-value: 6.60e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 261 EEGEVYTVKDVKFRGDLVGEQDAFESMVPFDSNETYNGSLVTSMEEGVKRVLGESGYAYPQVnTIPEFDDENKEVSLVVN 340
Cdd:COG2831 59 AEGPCFTIKRIRVEGNTVLPEEELQALLAPYLGRCLTLADLNALADAITNLYRDRGYITSRA-YLPPQDLSDGVLRIQVV 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 341 vdPGnriYVRDIRFTGNNATKDEVLRREMRQMEGSWLNSKSIETGKTRLNRLGyfeNVEVQTVRVPGS-DDQVDLVYSVK 419
Cdd:COG2831 138 --EG---RVGRIRVEGNSRLSRAYLRSALPLAEGKPLNLRDLEQGLLLLNRLP---GVQVTAELRPGTePGTSDLVVTVE 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 420 EANSGSVNFGV-GYGTESGVSFQ--VGLQQDNFLGSGNRVGVNAM---MNDYQKNISLDYRDPYWNlDGVSLGGKIFYDE 493
Cdd:COG2831 210 EAKPFRGSLGLdNSGSPSTGRYRlgASLSLDNLLGLGDQLSLSYSrslDGDGSRSYSLSYSVPLGY-WGLTLGLSYSRYR 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 494 FE-ASEAGIVDYTNQSYGGSLTWGFPFDELNRFEFGVGYTHNkignlspYLQVEQFLRAQADNIDSDgslNTNDFDINIS 572
Cdd:COG2831 289 SRvGGPFGTLDISGKSQTYGLRLSYPLIRSRDQKLSLSLGLD-------YKDSRNYLLGTEIEVQRR---RLSVLRLGLS 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 573 WTRN----------NLNRGyFPTAGNHQRAFYKmtvPGSDVQYFKMQYDVRQYMPLTEKHEFTLLFRGRLgygngygetn 642
Cdd:COG2831 359 YTRRlgggvlslslSFSQG-LDWLGATPAPDAS---RGPDGRFTKLRLSASRVQPLPQDFSLLLRLDGQY---------- 424
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 643 GNDNLFPfYENYYAGGFTSLRGFGSNSVgpkavyrdySGsNNGadtatddavggnavALASLELIvpTPFASDEVRNQIR 722
Cdd:COG2831 425 SSDPLLS-SEQFSLGGRYSVRGYDEGEL---------SG-DNG--------------WYLSNELR--WPLPRLSLLGGLQ 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 723 TSIFFDMASVWdtefdyrdsgaeyGDKYYYDYSDPTNyRSSYGAALQWmSPMGPLVFSL--AKPIKKYDGD-DEEFFTFT 799
Cdd:COG2831 478 LYAFLDAGRVW-------------NNSALPGQLNGRT-LAGAGLGLRL-SLGKNLSLDLdyARPLGDPDGDtDNRRLYFS 542
|
....*
gi 520915879 800 IGRTF 804
Cdd:COG2831 543 LSYSF 547
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
348-420 |
2.21e-14 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 68.91 E-value: 2.21e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 520915879 348 YVRDIRFTGNNATKDEVLRREMRQMEGSWLNS----KSIETGKTRLNRLGYFENVEVQTVRVPGSDDQVDLVYSVKE 420
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLLGLKEGDVYNRekleEDKEALKDRYGRLGYFDASVSTNVEIDDEVNTVDLTFNVDE 77
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
176-263 |
1.04e-13 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 66.98 E-value: 1.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 176 KIQQINFIGNEVFSDEELLSRFNLNVdvpwwnflaDEKYQKQVLAGDIEALKSFYLDRGYLKFNVdSTQVAISPDKKGVY 255
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLLGLKE---------GDVYNREKLEEDKEALKDRYGRLGYFDASV-STNVEIDDEVNTVD 70
|
....*...
gi 520915879 256 ITLGLEEG 263
Cdd:pfam07244 71 LTFNVDEG 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
267-344 |
7.69e-13 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 64.29 E-value: 7.69e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 520915879 267 TVKDVKFRGDLVGEQDAFESMVPFDSNETYNGSLVTSMEEGVKRVLGESGYAYPQVNTIPEFDDENKEVSLVVNVDPG 344
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLLGLKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVEIDDEVNTVDLTFNVDEG 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
93-172 |
3.07e-12 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 62.74 E-value: 3.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 93 TIASISFSGNKAIKDEQLQENLnasGIREGEALDRTTLSNIEKGLEDFYYSVGKYNATVKAVVT-PLPRNRSDLKFVFTE 171
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLL---GLKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVEiDDEVNTVDLTFNVDE 77
|
.
gi 520915879 172 G 172
Cdd:pfam07244 78 G 78
|
|
| 3a0901s03IAP75 |
TIGR00992 |
chloroplast envelope protein translocase, IAP75 family; Two families of proteins are involved ... |
304-671 |
2.60e-08 |
|
chloroplast envelope protein translocase, IAP75 family; Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130065 [Multi-domain] Cd Length: 718 Bit Score: 57.66 E-value: 2.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 304 MEEGVKRV---LGESGYAYPQVNTIPEFDdeNKEVSLVVNVDPGNRIYVRDIRFTGN---NATKDEVLRREMRQ--MEGS 375
Cdd:TIGR00992 225 LQEIRDRVqewYHNEGYACAQVVNFGNLN--TDEVVCEVVEGDITNLQIQFFDKLGNvveGNTRDPVVTRELPKqlKPGD 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 376 WLNSKSIETGKTRLNRLGYFENVEVQTvrVPGSDDQVDLVYSVK--EANSGSVNFGVGYGTESG-------VSFQVG--- 443
Cdd:TIGR00992 303 VFNIEAGKTALQNINSLGLFSNIEVNP--RPDEMNEGEIIVEIKlkELEQKSAEVSTEWSIVPGrggrptlASSQPGgti 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 444 -LQQDNFLGSGNRVGVNAMMNDY---QKNISLD--YRDPYwnLDGVSlggKIFYDEFEASEAGIVDYTNQSYGGSLTWGF 517
Cdd:TIGR00992 381 tFEHRNLQGLNRSLGGSVTTSNFlnpQDDLLFKveYTHPY--LDGVD---NPRNRTYTASCFNSRKLSPVFTGGPGVNEV 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 518 PFDELNRFEFGVGYTHN--KIGNLSPYLQVEQ-FLRAQADNIDSDGS-------LNTND-------------FDINISWT 574
Cdd:TIGR00992 456 PSIWVDRAGVKANITENfaRQSKFTYGLVMEEiFTRDESRHINANGQrslpsgpISADGppttlsgtgvdrmAFLQANIT 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 575 RNNLNRGYFPTAGNHQRAFYKMTVP-GSDVQYF-KMQYDVRQYMPLTEKHEF-------TLLFRGRlgYGNGYGEtngnd 645
Cdd:TIGR00992 536 RDNTNFVNGPTVGSRVRFQVDQGLGvGSGFPFFnRHQLTYTKFIQLNWVELGagkspppVLVLHGH--YGGCVGD----- 608
|
410 420
....*....|....*....|....*.
gi 520915879 646 nlFPFYENYYAGGFTSLRGFGSNSVG 671
Cdd:TIGR00992 609 --LPSYDAFILGGPYSVRGYNMGELG 632
|
|
| FepA |
COG4771 |
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ... |
419-651 |
4.66e-03 |
|
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];
Pssm-ID: 443803 [Multi-domain] Cd Length: 612 Bit Score: 40.61 E-value: 4.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 419 KEANSGSVNFGVGYGTESGVSFQVGLqqdNFLGSGNRVGVNammndyqknISLDYRDpywnldgvslgGKIFYDEFEASE 498
Cdd:COG4771 155 KPTDELEGSVSLGYGSNGNGTYSGSL---SLGGPGDKLSFL---------LSGSYRD-----------RDGYLDYRNGGF 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 499 AGIVDYTNQSYGGSLTWgfPFDELNRFEFGVGYTHNKIGNLSPYLQVEQFLRAQADNIDS-----DGSLN-----TNDFD 568
Cdd:COG4771 212 VGNSGYERYNLNAKLGY--RLSDNHRLSLSGGYSRQDRDGGPPTLGDTEISSDNAGDRDTttdrgNYSLRyngdlGDNLD 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 569 INISWTRNNLNRGYFPTAGNhqrafykmTVPGSDVQYFKMQYDVRQYMPLTEKHEFTL---LFRGRLGYGNGYGETNGND 645
Cdd:COG4771 290 LSLYYSRTDRDSTNGSLGGS--------TGSFSDSDDTTYGLELDLTYPLGGNHTLTLgaeYRYDDLDSSSFLGGADASR 361
|
....*.
gi 520915879 646 NLFPFY 651
Cdd:COG4771 362 DTYGLF 367
|
|
| FtsQ |
COG1589 |
Cell division septal protein FtsQ [Cell cycle control, cell division, chromosome partitioning]; ... |
6-109 |
7.40e-03 |
|
Cell division septal protein FtsQ [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441197 [Multi-domain] Cd Length: 241 Bit Score: 38.86 E-value: 7.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520915879 6 ILFASLLATSVSANGAENFVVQDIEIDGLQRVALGAALLKMPVRVGDTIGQGDVAEIIRALYASGNFEDVRVLRD-GEVL 84
Cdd:COG1589 22 LLLLLLALLVWLLLFSPLFPVREVEVEGNSHVSAEEIRAALGILLGGNLFTLDLDAIRERLEALPWVKSASVRRRwPDTL 101
|
90 100
....*....|....*....|....*
gi 520915879 85 VVQVKERPTIASISFSGNKAIKDEQ 109
Cdd:COG1589 102 VIEVTEREPVARWNTGGGYYLVDAD 126
|
|
| |
