|
Name |
Accession |
Description |
Interval |
E-value |
| PRK00711 |
PRK00711 |
D-amino acid dehydrogenase; |
1-415 |
0e+00 |
|
D-amino acid dehydrogenase;
Pssm-ID: 234819 [Multi-domain] Cd Length: 416 Bit Score: 825.20 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQSGPALETSFANAGEVSFGYCSPWAAPGIPMKAMKWLFMKHAPLILRPK 80
Cdd:PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPALETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQRHAPLAIRPD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 81 LDMAMLSWMARMLSNCTSERYAINKSRMLRLADYSRIALAELRAETGIAYDERMQGTLQLFRTQQQLEASAKDVKALAAD 160
Cdd:PRK00711 81 GDPFQLRWMWQMLRNCTASRYAVNKSRMVRLAEYSRDCLKALRAETGIQYEGRQGGTLQLFRTQQQLDAAAKDIAVLEEA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 161 GIPYEVLDRDGCVRFEPALRHVRDKIVGGLLTPKDETGDCFKFTNALAAKAEALGVRFAYGTTIKALDVEAGRVRGVITD 240
Cdd:PRK00711 161 GVPYELLDRDELAAVEPALAGVRHKLVGGLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 241 RERMSAEAVVIALGSYSPLLLKPLGIRLPVYPVKGYSLTIPITDASRAPESTVMDETYKIAITRLGDRIRVGGMAEISGY 320
Cdd:PRK00711 241 GGVITADAYVVALGSYSTALLKPLGVDIPVYPLKGYSLTVPITDEDRAPVSTVLDETYKIAITRFDDRIRVGGMAEIVGF 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 321 TNDLGLARRSTLEHSVTDLFPG-GDISKASFWSGLRPMTPDGTPVIGPTKVAGLFLNTGHGTLGWTMSTGSARLIGDLVS 399
Cdd:PRK00711 321 DLRLDPARRETLEMVVRDLFPGgGDLSQATFWTGLRPMTPDGTPIVGATRYKNLWLNTGHGTLGWTMACGSGQLLADLIS 400
|
410
....*....|....*.
gi 517056601 400 GRQPEIDARDLAISRY 415
Cdd:PRK00711 401 GRKPAIDADDLSVARY 416
|
|
| DadA |
COG0665 |
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism]; |
1-414 |
5.72e-110 |
|
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
Pssm-ID: 440429 [Multi-domain] Cd Length: 364 Bit Score: 327.63 E-value: 5.72e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQsGPALETSFANAGEVSFGycspWAAPGIPmkamkwlfmkhaplilrpk 80
Cdd:COG0665 3 ADVVVIGGGIAGLSTAYHLARRGLDVTVLERG-RPGSGASGRNAGQLRPG----LAALADR------------------- 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 81 ldmamlswmarmlsnctseryainksRMLRLADYSRIALAELRAETGIAYDERMQGTLQLFRTQQQLEASAKDVKALAAD 160
Cdd:COG0665 59 --------------------------ALVRLAREALDLWRELAAELGIDCDFRRTGVLYLARTEAELAALRAEAEALRAL 112
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 161 GIPYEVLDRDGCVRFEPALRhvRDKIVGGLLTPKDETGDCFKFTNALAAKAEALGVRFAYGTTIKALDVEAGRVRGVITD 240
Cdd:COG0665 113 GLPVELLDAAELREREPGLG--SPDYAGGLYDPDDGHVDPAKLVRALARAARAAGVRIREGTPVTGLEREGGRVTGVRTE 190
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 241 RERMSAEAVVIALGSYSPLLLKPLGIRLPVYPVKGYSLTIPITDAsrAPESTVMDETyKIAITRLGD-RIRVGGMAEISG 319
Cdd:COG0665 191 RGTVRADAVVLAAGAWSARLLPMLGLRLPLRPVRGYVLVTEPLPD--LPLRPVLDDT-GVYLRPTADgRLLVGGTAEPAG 267
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 320 YTNDLGLARRSTLEHSVTDLFPG-GDISKASFWSGLRPMTPDGTPVIGPT-KVAGLFLNTGHGTLGWTMSTGSARLIGDL 397
Cdd:COG0665 268 FDRAPTPERLEALLRRLRRLFPAlADAEIVRAWAGLRPMTPDGLPIIGRLpGAPGLYVATGHGGHGVTLAPAAGRLLADL 347
|
410
....*....|....*..
gi 517056601 398 VSGRQPEIDARDLAISR 414
Cdd:COG0665 348 ILGGEPPLDLAPFSPDR 364
|
|
| PRK12409 |
PRK12409 |
D-amino acid dehydrogenase small subunit; Provisional |
2-398 |
8.22e-105 |
|
D-amino acid dehydrogenase small subunit; Provisional
Pssm-ID: 237093 [Multi-domain] Cd Length: 410 Bit Score: 316.19 E-value: 8.22e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 2 KVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQSGPALETSFANAGEVSFGYCSPWAAPGIPMKAMKWLFMKHAPLILRPKL 81
Cdd:PRK12409 3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETSFANGGQLSASNAEVWNHWATVLKGLKWMLRKDAPLLLNPKP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 82 DMAMLSWMARMLSNCtsERYAINKSRMLRLADYSRIALAELRAETGIAYDERMQGTLQLFRTQQQLEASAKDVKALAADG 161
Cdd:PRK12409 83 SWHKYSWLAEFLAHI--PNYRANTIETVRLAIAARKHLFDIAEREGIDFDLERRGILHIYHDKAGFDHAKRVNALLAEGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 162 IPYEVLDRDGCVRFEPALRhvrDKIVGGLLTPKDETGDCFKFTNALAAKAEALGVRFAYGTTIKALDVEAGRVRGVITD- 240
Cdd:PRK12409 161 LERRAVTPEEMRAIEPTLT---GEYYGGYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPs 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 241 ----RERMSAEAVVIALGSYSPLLLKPLGIRLPVYPVKGYSLTIPITD-ASR--APESTVMDETYKIAITRLG-DRIRVG 312
Cdd:PRK12409 238 aehpSRTLEFDGVVVCAGVGSRALAAMLGDRVNVYPVKGYSITVNLDDeASRaaAPWVSLLDDSAKIVTSRLGaDRFRVA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 313 GMAEISGYTNDLGLARRSTLEHSVTDLFPGGDISKASFWSGLRPMTPDGTPVIGPTKVAGLFLNTGHGTLGWTMSTGSAR 392
Cdd:PRK12409 318 GTAEFNGYNRDIRADRIRPLVDWVRRNFPDVSTRRVVPWAGLRPMMPNMMPRVGRGRRPGVFYNTGHGHLGWTLSAATAD 397
|
....*.
gi 517056601 393 LIGDLV 398
Cdd:PRK12409 398 LVAQVV 403
|
|
| DAO |
pfam01266 |
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ... |
2-397 |
2.06e-74 |
|
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Pssm-ID: 426168 [Multi-domain] Cd Length: 339 Bit Score: 235.76 E-value: 2.06e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 2 KVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQSGPALETSFANAGEVSFGYcspwaapgipmkamkwlfmkhaplilrpkl 81
Cdd:pfam01266 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGSGASGRNAGLIHPGL------------------------------ 50
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 82 dmamlswmarmlsnctserYAINKSRMLRLADYSRIALAELRAETGIAYDERMQGTLQLFRTQQQlEASAKDVKALAADG 161
Cdd:pfam01266 51 -------------------RYLEPSELARLALEALDLWEELEEELGIDCGFRRCGVLVLARDEEE-EALEKLLAALRRLG 110
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 162 IPYEVLDRDGCVRFEPALrhvrDKIVGGLLTPKDETGDCFKFTNALAAKAEALGVRFAYGTTIKALDVEAGrVRGVITDR 241
Cdd:pfam01266 111 VPAELLDAEELRELEPLL----PGLRGGLFYPDGGHVDPARLLRALARAAEALGVRIIEGTEVTGIEEEGG-VWGVVTTG 185
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 242 ErmsAEAVVIALGSYSPLLLKPlGIRLPVYPVKGYSLTI-PITDASRAPE--STVMDETYKIAITRLGDRIRVGGMAEIS 318
Cdd:pfam01266 186 E---ADAVVNAAGAWADLLALP-GLRLPVRPVRGQVLVLePLPEALLILPvpITVDPGRGVYLRPRADGRLLLGGTDEED 261
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 319 GY-TNDLGLARRSTLEHSVTDLFPG-GDIskASFWSGLRPMtPDGTPVIGPTKVAGLFLNTGHGTLGWTMSTGSARLIGD 396
Cdd:pfam01266 262 GFdDPTPDPEEIEELLEAARRLFPAlADI--ERAWAGLRPL-PDGLPIIGRPGSPGLYLATGHGGHGLTLAPGIGKLLAE 338
|
.
gi 517056601 397 L 397
Cdd:pfam01266 339 L 339
|
|
| thiamin_ThiO |
TIGR02352 |
glycine oxidase ThiO; This family consists of the homotetrameric, FAD-dependent glycine ... |
17-402 |
1.68e-31 |
|
glycine oxidase ThiO; This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]
Pssm-ID: 274092 [Multi-domain] Cd Length: 337 Bit Score: 122.47 E-value: 1.68e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 17 YQLAKAGHDVTVVDRQSgpaletsfaNAGEVSfgycspWAAPGipmkamkwlfmkhaplilrpkldmaMLSwmarMLSNC 96
Cdd:TIGR02352 1 WELAKRGHSVTLFDRDP---------MGGGAS------WAAAG-------------------------MLA----PHAEC 36
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 97 TSERyainkSRMLRLADYSR----IALAELRAETGIAYDERMQGTLQLFRTQQQLEASAKDVKALAADGIPYEVLDRDGC 172
Cdd:TIGR02352 37 EYAE-----DPLFDLALESLrlypEWLEALKELTGLDTGYHQCGTLVVAFDEDDVEHLRQLADLQSATGMEVEWLSGRAL 111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 173 VRFEPALRhvrDKIVGGLLTPKDETGDCFKFTNALAAKAEALGVRFAYGTTIKALDVEAGRVRGVITDRERMSAEAVVIA 252
Cdd:TIGR02352 112 RRLEPYLS---GGIRGAVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSGDVQADQVVLA 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 253 LGSYSPLLLKplgirLPVYPVKGYSLTIPITDASRAP---ESTVMDETYKIaITRLGDRIRVGGMAEISGY--TNDLGLA 327
Cdd:TIGR02352 189 AGAWAGELLP-----LPLRPVRGQPLRLEAPAVPLLNrplRAVVYGRRVYI-VPRRDGRLVVGATMEESGFdtTPTLGGI 262
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517056601 328 RRstLEHSVTDLFPG-GDISKASFWSGLRPMTPDGTPVIGPTKVA-GLFLNTGHGTLGWTMSTGSARLIGDLVSGRQ 402
Cdd:TIGR02352 263 KE--LLRDAYTILPAlKEARLLETWAGLRPGTPDNLPYIGEHPEDrRLLIATGHYRNGILLAPATAEVIADLILGKE 337
|
|
| LhgO |
COG0579 |
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism]; |
3-275 |
9.31e-25 |
|
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
Pssm-ID: 440344 [Multi-domain] Cd Length: 418 Bit Score: 105.23 E-value: 9.31e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 3 VIVLGAGIVGVTSAYQLAKA-GHDVTVVDRQSGPALETSFANAGEVsfgycspwaapgipmkamkwlfmkHAPLILRPKl 81
Cdd:COG0579 7 VVIIGAGIVGLALARELSRYeDLKVLVLEKEDDVAQESSGNNSGVI------------------------HAGLYYTPG- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 82 dmamlSWMARMlsnCTseryAINKsrmlRLADYSRialaelraETGIAYDERmqGTLQLFRTQQQLEASAKDVKALAADG 161
Cdd:COG0579 62 -----SLKARL---CV----EGNE----LFYELCR--------ELGIPFKRC--GKLVVATGEEEVAFLEKLYERGKANG 115
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 162 IPY-EVLDRDGCVRFEPalrHVRDKIVGGLLTPkdETGDC--FKFTNALAAKAEALGVRFAYGTTIKALDVEAGRVRgVI 238
Cdd:COG0579 116 VPGlEILDREELRELEP---LLSDEGVAALYSP--STGIVdpGALTRALAENAEANGVELLLNTEVTGIEREGDGWE-VT 189
|
250 260 270
....*....|....*....|....*....|....*....
gi 517056601 239 TDRERMSAEAVVIALGSYSPLLLKPLGIRLPV--YPVKG 275
Cdd:COG0579 190 TNGGTIRARFVINAAGLYADRLAQMAGIGKDFgiFPVKG 228
|
|
| mnmC |
PRK01747 |
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ... |
2-401 |
1.95e-09 |
|
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;
Pssm-ID: 234978 [Multi-domain] Cd Length: 662 Bit Score: 59.47 E-value: 1.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 2 KVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQSGPALETSFANAGEVSfgycspwaapgipmkamkwlfmkhaPLILRPkl 81
Cdd:PRK01747 262 DAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALY-------------------------PLLSKD-- 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 82 DMAMlswmarmlsnctseryainkSRMLRLA-DYSRIALAELRAE-----------TGIAYDERMQGTLQ---------- 139
Cdd:PRK01747 315 DNAL--------------------SRFFRAAfLFARRFYDALPAAgvafdhdwcgvLQLAWDEKSAEKIAkmlalglpae 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 140 LFRTQQQLEASAKDVKALAADGIPYevldrdgcvrfePAlrhvrdkivGGLLTPKDetgdcfkFTNALAAKAEAlGVRFA 219
Cdd:PRK01747 375 LARALDAEEAEELAGLPVPCGGIFY------------PQ---------GGWLCPAE-------LCRALLALAGQ-QLTIH 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 220 YGTTIKALDVEAGRVRGVITDRERMSAEAVVIALGSYSPLLlkPLGIRLPVYPVKGYSLTIPITDASRAPESTVMDETYK 299
Cdd:PRK01747 426 FGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAARF--AQTAHLPLYSVRGQVSHLPTTPALSALKQVLCYDGYL 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 300 IAITRLG--------DRirvggmaeisgytNDLGLARRSTlEH-----SVTDLFPGG------DISKASFWSGLRPMTPD 360
Cdd:PRK01747 504 TPQPANGthcigasyDR-------------DDTDTAFREA-DHqenleRLAECLPQAlwakevDVSALQGRVGFRCASRD 569
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517056601 361 GTPVIGP------TKVA-----------------GLFLNTGHGTLGWTMSTGSARLIGDLVSGR 401
Cdd:PRK01747 570 RLPMVGNvpdeaaTLAEyaalanqqpardaprlpGLYVAGALGSRGLCSAPLGAELLASQIEGE 633
|
|
| MnmC_Cterm |
TIGR03197 |
tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain; In ... |
16-400 |
2.27e-09 |
|
tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain; In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 274478 [Multi-domain] Cd Length: 381 Bit Score: 58.82 E-value: 2.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 16 AYQLAKAGHDVTVVDRQSGPALETSfanagevsfgycspwaapGIPMKAMKwlfmkhaPLILRPKLDMAMLSwmarMLSN 95
Cdd:TIGR03197 2 AYSLARRGWQVTLYEQDEAPAQGAS------------------GNPQGALY-------PLLSADDNPLSRFF----LAAF 52
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 96 ctseRYAinKSRMLRLADYSRIALAELRAETGIAYDERMQGTLQLFRTQQQLEA------SAKDVKALAADGIPYEVLdr 169
Cdd:TIGR03197 53 ----LYA--RRFYRQLAEAGFPFDHEWCGVLQLAYDEKEAERLQKLLEQLGFPEelarwvDAEQASQLAGIPLPYGGL-- 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 170 dgcvrFEPAlrhvrdkivGGLLTPKDetgdcfkFTNALAAKAEAlGVRFAYGTTIKALDVEAGRVRGVITDRERMSAEAV 249
Cdd:TIGR03197 125 -----FFPQ---------GGWLSPPQ-------LCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVV 182
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 250 VIALGSYSPLLLKPLgiRLPVYPVKGYSLTIPITDASRAPESTVMDETYkiaITRLGDRIRVGGmaeiSGYT-NDLGLAR 328
Cdd:TIGR03197 183 VLANGAQAPQLAQTA--HLPLRPVRGQVSHLPATEALSALKTVLCYDGY---LTPANNGEHCIG----ASYDrNDDDLAL 253
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 329 RsTLEHS-----VTDLFP------GGDISKASFWSGLRPMTPDGTPVIGP--------------------------TKVA 371
Cdd:TIGR03197 254 R-EADHAenlerLAECLPalawasEVDISALQGRVGVRCASPDHLPLVGAvpdfeaikeayaelakdknrpiaepaPYYP 332
|
410 420
....*....|....*....|....*....
gi 517056601 372 GLFLNTGHGTLGWTMSTGSARLIGDLVSG 400
Cdd:TIGR03197 333 GLYVLGGLGSRGLTSAPLAAEILAAQICG 361
|
|
| COG1233 |
COG1233 |
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ... |
1-250 |
8.69e-08 |
|
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 440846 [Multi-domain] Cd Length: 491 Bit Score: 54.09 E-value: 8.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQSGPaletsfanaGevsfGYCSPWAAPG---------IPM-KAMKWLF- 69
Cdd:COG1233 4 YDVVVIGAGIGGLAAAALLARAGYRVTVLEKNDTP---------G----GRARTFERPGfrfdvgpsvLTMpGVLERLFr 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 70 ----MKHAPLIlrpKLDMAMlswmarmlsnctseRYAINKSRMLRL-ADYSRIA--LAELRAETGIAYDERMQGTLQLFr 142
Cdd:COG1233 71 elglEDYLELV---PLDPAY--------------RVPFPDGRALDLpRDLERTAaeLERLFPGDAEAYRRFLAELRRLY- 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 143 tqqqlEASAKDVKALAADGIPyEVLDRDGCVRFEPAL---------RHVRDKIVGGLLT--------PKDET-------- 197
Cdd:COG1233 133 -----DALLEDLLYRPLLSLR-DLLRPLALARLLRLLlrslrdllrRYFKDPRLRALLAgqalylglSPDRTpalyalia 206
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517056601 198 ------------GDCFKFTNALAAKAEALGVRFAYGTTIKALDVEAGRVRGVIT-DRERMSAEAVV 250
Cdd:COG1233 207 yleyaggvwypkGGMGALADALARLAEELGGEIRTGAEVERILVEGGRATGVRLaDGEEIRADAVV 272
|
|
| PRK08274 |
PRK08274 |
FAD-dependent tricarballylate dehydrogenase TcuA; |
173-256 |
1.20e-07 |
|
FAD-dependent tricarballylate dehydrogenase TcuA;
Pssm-ID: 236214 [Multi-domain] Cd Length: 466 Bit Score: 53.73 E-value: 1.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 173 VRFEPALrhvrdkivGGLLTPKDET----GDCFKFTNALAAKAEALGVRFAYGTTIKALDVEAGRVRGVIT-----DRER 243
Cdd:PRK08274 107 VRFQPPL--------SGALHVARTNaffwGGGKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAgsaagGAER 178
|
90
....*....|...
gi 517056601 244 MSAEAVVIALGSY 256
Cdd:PRK08274 179 IRAKAVVLAAGGF 191
|
|
| FixC |
COG0644 |
Dehydrogenase (flavoprotein) [Energy production and conversion]; |
202-280 |
6.57e-07 |
|
Dehydrogenase (flavoprotein) [Energy production and conversion];
Pssm-ID: 440409 [Multi-domain] Cd Length: 281 Bit Score: 50.35 E-value: 6.57e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517056601 202 KFTNALAAKAEALGVRFAYGTTIKALDVEAGRVRGVITDRERMSAEAVVIALGSYSPlLLKPLGIRLPVYPVKGYSLTI 280
Cdd:COG0644 87 RFDRWLAEQAEEAGAEVRTGTRVTDVLRDDGRVVVRTGDGEEIRADYVVDADGARSL-LARKLGLKRRSDEPQDYALAI 164
|
|
| UbiH |
COG0654 |
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ... |
1-36 |
8.05e-07 |
|
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 440419 [Multi-domain] Cd Length: 326 Bit Score: 50.71 E-value: 8.05e-07
10 20 30
....*....|....*....|....*....|....*.
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQSGPA 36
Cdd:COG0654 4 TDVLIVGGGPAGLALALALARAGIRVTVVERAPPPR 39
|
|
| PRK11728 |
PRK11728 |
L-2-hydroxyglutarate oxidase; |
3-266 |
1.33e-06 |
|
L-2-hydroxyglutarate oxidase;
Pssm-ID: 183292 [Multi-domain] Cd Length: 393 Bit Score: 50.21 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 3 VIVLGAGIVGVTSAYQLAKAGHD--VTVVDRQSGPALETSFANAGEVSFG--YcspwaAPGiPMKAmkwlfmkhaplilr 78
Cdd:PRK11728 5 FVIIGGGIVGLSTAMQLQERYPGarIAVLEKESGPARHQTGHNSGVIHAGvyY-----TPG-SLKA-------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 79 pkldmamlswmarmlsnctseryainksrmlRLADYSRIALAELRAETGIAYDErmQGTLQLFRTQQQLEASAKDVKALA 158
Cdd:PRK11728 65 -------------------------------RFCRRGNEATKAFCDQHGIPYEE--CGKLLVATSELELERMEALYERAR 111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 159 ADGIPYEVLDRDGCVRFEPalrHVRDkiVGGLLTPkdETG--DCFKFTNALAAKAEALGVRFAYGTTIKALDVEAGRVRg 236
Cdd:PRK11728 112 ANGIEVERLDAEELREREP---NIRG--LGAIFVP--STGivDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVV- 183
|
250 260 270
....*....|....*....|....*....|
gi 517056601 237 VITDRERMSAEAVVIALGSYSPLLLKPLGI 266
Cdd:PRK11728 184 VRTTQGEYEARTLINCAGLMSDRLAKMAGL 213
|
|
| COG3349 |
COG3349 |
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ... |
1-253 |
3.04e-06 |
|
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];
Pssm-ID: 442577 [Multi-domain] Cd Length: 445 Bit Score: 49.08 E-value: 3.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTV--------------VDRQSGPALETSFanagEVSFGYCSpwAAPGipmkamk 66
Cdd:COG3349 4 PRVVVVGGGLAGLAAAVELAEAGFRVTLlearprlggrarsfPDPDTGLPIDNGQ----HVLLGCYR--NTLD------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 67 wlFMKHAP----LILRPKLDMAM---LSWMARM---------LSnctseryAINKSRMLRLADYSRIALAeLRAETGIAY 130
Cdd:COG3349 71 --LLRRIGaadnLVGPEPLQFPLpggRRWTLRAprlpaplhlLR-------ALLRAPGLSLADRLALLRL-LTACRERRW 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 131 DERMQGTL-QLFRTQQQLEASAKD------VKALAADGipyevldRDGCVRfePALRHVRDKIVGG-----LLTPKDETG 198
Cdd:COG3349 141 RELDDISVaDWLRRHGQSPRLIRRlwepllLAALNTPP-------EQASAR--LALTVLRETLLAGpaasdLLVPRGPLS 211
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 517056601 199 DCfkFTNALAAKAEALGVRFAYGTTIKALDVEAGRVRGVIT-DRERMSAEAVVIAL 253
Cdd:COG3349 212 EL--FVDPALAYLEARGGEVRLGTRVRALEFDGGRVTGLVLaDGETVPADAVVLAV 265
|
|
| NAD_binding_8 |
pfam13450 |
NAD(P)-binding Rossmann-like domain; |
5-68 |
3.48e-06 |
|
NAD(P)-binding Rossmann-like domain;
Pssm-ID: 433218 [Multi-domain] Cd Length: 67 Bit Score: 44.44 E-value: 3.48e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517056601 5 VLGAGIVGVTSAYQLAKAGHDVTVVDRQSGPALETSFANAGEVSFGYCSPWAAPGIPMKAMKWL 68
Cdd:pfam13450 1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDRLGGNAYSYRVPGYVFDYGAHIFHGSDEPNVRDLL 64
|
|
| soxA_mon |
TIGR01377 |
sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of ... |
3-274 |
4.57e-06 |
|
sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]
Pssm-ID: 130444 [Multi-domain] Cd Length: 380 Bit Score: 48.29 E-value: 4.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 3 VIVLGAGIVGVTSAYQLAKAGHDVTVVDRqsgpaletsfanagevsfgycspwaapgipmkamkwLFMKHaplilrpkld 82
Cdd:TIGR01377 3 VIVVGAGIMGCFAAYHLAKHGKKTLLLEQ------------------------------------FDLPH---------- 36
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 83 mamlswmarmlSNCTSEryaiNKSRMLRLA----DYSRIAL------AELRAETGIaydermqgtlQLFRTQQQLEASAK 152
Cdd:TIGR01377 37 -----------SRGSSH----GQSRIIRKAypedFYTPMMLecyqlwAQLEKEAGT----------KLHRQTGLLLLGPK 91
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 153 D-------VKALAADGIPYEVLDRDGCVRFEPALRHVRDKIvgGLLtpkDETGDCFKFTNALAA---KAEALGVRFAYGT 222
Cdd:TIGR01377 92 EnqflktiQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEV--GLL---DPNGGVLYAEKALRAlqeLAEAHGATVRDGT 166
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 517056601 223 TIKALDVEAGRVRgVITDRERMSAEAVVIALGSYSPLLLKPLGIRLPVYPVK 274
Cdd:TIGR01377 167 KVVEIEPTELLVT-VKTTKGSYQANKLVVTAGAWTSKLLSPLGIEIPLQPLR 217
|
|
| COG3380 |
COG3380 |
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]; |
1-35 |
5.78e-06 |
|
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];
Pssm-ID: 442607 [Multi-domain] Cd Length: 331 Bit Score: 47.95 E-value: 5.78e-06
10 20 30
....*....|....*....|....*....|....*
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQSGP 35
Cdd:COG3380 4 PDIAIIGAGIAGLAAARALQDAGHEVTVFEKSRGV 38
|
|
| HemY |
COG1232 |
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ... |
1-33 |
6.92e-06 |
|
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis
Pssm-ID: 440845 [Multi-domain] Cd Length: 443 Bit Score: 47.90 E-value: 6.92e-06
10 20 30
....*....|....*....|....*....|...
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQS 33
Cdd:COG1232 2 KRVAVIGGGIAGLTAAYRLAKAGHEVTVLEASD 34
|
|
| YobN |
COG1231 |
Monoamine oxidase [Amino acid transport and metabolism]; |
2-28 |
7.26e-06 |
|
Monoamine oxidase [Amino acid transport and metabolism];
Pssm-ID: 440844 [Multi-domain] Cd Length: 440 Bit Score: 47.99 E-value: 7.26e-06
10 20
....*....|....*....|....*..
gi 517056601 2 KVIVLGAGIVGVTSAYQLAKAGHDVTV 28
Cdd:COG1231 9 DVVIVGAGLAGLAAARELRKAGLDVTV 35
|
|
| PRK06522 |
PRK06522 |
2-dehydropantoate 2-reductase; Reviewed |
1-36 |
1.77e-05 |
|
2-dehydropantoate 2-reductase; Reviewed
Pssm-ID: 235821 [Multi-domain] Cd Length: 304 Bit Score: 46.38 E-value: 1.77e-05
10 20 30
....*....|....*....|....*....|....*.
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQSGPA 36
Cdd:PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHL 36
|
|
| SdhA |
COG1053 |
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ... |
3-257 |
1.83e-05 |
|
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle
Pssm-ID: 440673 [Multi-domain] Cd Length: 443 Bit Score: 46.75 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 3 VIVLGAGIVGVTSAYQLAKAGHDVTVVDRQS---GpaleTSFANAGEVsfgycspwAAPGIPMkamkwlfmkhaplilrp 79
Cdd:COG1053 6 VVVVGSGGAGLRAALEAAEAGLKVLVLEKVPprgG----HTAAAQGGI--------NAAGTNV----------------- 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 80 kldmamlswmarmlsnctseryainksrMLRLADYSR-IALAELRAETGIAYDERMQGTLqlfrtqqqLEASAKDVKALA 158
Cdd:COG1053 57 ----------------------------QKAAGEDSPeEHFYDTVKGGDGLADQDLVEAL--------AEEAPEAIDWLE 100
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 159 ADGIPYEVLDrdgcvrfEPALRHVRDKIVGGLLTPKDETGdcFKFTNALAAKAEALGVRFAYGTTIKALDVEAGRVRGVI 238
Cdd:COG1053 101 AQGVPFSRTP-------DGRLPQFGGHSVGRTCYAGDGTG--HALLATLYQAALRLGVEIFTETEVLDLIVDDGRVVGVV 171
|
250 260
....*....|....*....|....
gi 517056601 239 T-----DRERMSAEAVVIALGSYS 257
Cdd:COG1053 172 ArdrtgEIVRIRAKAVVLATGGFG 195
|
|
| PanE |
COG1893 |
Ketopantoate reductase [Coenzyme transport and metabolism]; Ketopantoate reductase is part of ... |
1-31 |
2.06e-05 |
|
Ketopantoate reductase [Coenzyme transport and metabolism]; Ketopantoate reductase is part of the Pathway/BioSystem: Pantothenate/CoA biosynthesis
Pssm-ID: 441497 [Multi-domain] Cd Length: 305 Bit Score: 46.00 E-value: 2.06e-05
10 20 30
....*....|....*....|....*....|.
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVDR 31
Cdd:COG1893 1 MKIAILGAGAIGGLLGARLARAGHDVTLVAR 31
|
|
| PRK07233 |
PRK07233 |
hypothetical protein; Provisional |
2-31 |
2.13e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 235977 [Multi-domain] Cd Length: 434 Bit Score: 46.42 E-value: 2.13e-05
10 20 30
....*....|....*....|....*....|
gi 517056601 2 KVIVLGAGIVGVTSAYQLAKAGHDVTVVDR 31
Cdd:PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEA 30
|
|
| trkA |
PRK09496 |
Trk system potassium transporter TrkA; |
1-31 |
2.70e-05 |
|
Trk system potassium transporter TrkA;
Pssm-ID: 236541 [Multi-domain] Cd Length: 453 Bit Score: 46.27 E-value: 2.70e-05
10 20 30
....*....|....*....|....*....|.
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVDR 31
Cdd:PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDT 31
|
|
| PRK06753 |
PRK06753 |
hypothetical protein; Provisional |
1-45 |
3.50e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 168661 [Multi-domain] Cd Length: 373 Bit Score: 45.45 E-value: 3.50e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQSgpalETSFANAG 45
Cdd:PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE----SVKEVGAG 41
|
|
| PRK12921 |
PRK12921 |
oxidoreductase; |
1-32 |
4.36e-05 |
|
oxidoreductase;
Pssm-ID: 183829 [Multi-domain] Cd Length: 305 Bit Score: 45.23 E-value: 4.36e-05
10 20 30
....*....|....*....|....*....|..
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQ 32
Cdd:PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVRP 32
|
|
| solA |
PRK11259 |
N-methyl-L-tryptophan oxidase; |
161-270 |
8.06e-05 |
|
N-methyl-L-tryptophan oxidase;
Pssm-ID: 236887 [Multi-domain] Cd Length: 376 Bit Score: 44.44 E-value: 8.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056601 161 GIPYEVLDRDGCVRFEPALRhVRDKIVG------GLLTPKDetgdCFKftnALAAKAEALGVRFAYGTTIKALDVEAGRV 234
Cdd:PRK11259 111 GLPHEVLDAAEIRRRFPQFR-LPDGYIAlfepdgGFLRPEL----AIK---AHLRLAREAGAELLFNEPVTAIEADGDGV 182
|
90 100 110
....*....|....*....|....*....|....*.
gi 517056601 235 RgVITDRERMSAEAVVIALGSYSPLLLKPLGIRLPV 270
Cdd:PRK11259 183 T-VTTADGTYEAKKLVVSAGAWVKDLLPPLELPLTP 217
|
|
| GltD |
COG0493 |
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ... |
2-32 |
1.53e-04 |
|
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis
Pssm-ID: 440259 [Multi-domain] Cd Length: 434 Bit Score: 43.59 E-value: 1.53e-04
10 20 30
....*....|....*....|....*....|.
gi 517056601 2 KVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQ 32
Cdd:COG0493 123 KVAVVGSGPAGLAAAYQLARAGHEVTVFEAL 153
|
|
| gltD |
PRK12810 |
glutamate synthase subunit beta; Reviewed |
2-31 |
2.13e-04 |
|
glutamate synthase subunit beta; Reviewed
Pssm-ID: 237213 [Multi-domain] Cd Length: 471 Bit Score: 43.23 E-value: 2.13e-04
10 20 30
....*....|....*....|....*....|
gi 517056601 2 KVIVLGAGIVGVTSAYQLAKAGHDVTVVDR 31
Cdd:PRK12810 145 KVAVVGSGPAGLAAADQLARAGHKVTVFER 174
|
|
| ApbA |
pfam02558 |
Ketopantoate reductase PanE/ApbA; This is a family of 2-dehydropantoate 2-reductases also ... |
3-31 |
2.97e-04 |
|
Ketopantoate reductase PanE/ApbA; This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalyzed by this enzyme is: (R)-pantoate + NADP(+) <=> 2-dehydropantoate + NADPH. AbpA catalyzes the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Pssm-ID: 426831 [Multi-domain] Cd Length: 147 Bit Score: 40.68 E-value: 2.97e-04
10 20
....*....|....*....|....*....
gi 517056601 3 VIVLGAGIVGVTSAYQLAKAGHDVTVVDR 31
Cdd:pfam02558 1 IAILGAGAIGSLLGARLAKAGHDVTLILR 29
|
|
| CzcO |
COG2072 |
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ... |
3-36 |
3.35e-04 |
|
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];
Pssm-ID: 441675 [Multi-domain] Cd Length: 414 Bit Score: 42.54 E-value: 3.35e-04
10 20 30
....*....|....*....|....*....|....
gi 517056601 3 VIVLGAGIVGVTSAYQLAKAGHDVTVVDRQSGPA 36
Cdd:COG2072 9 VVVIGAGQAGLAAAYHLRRAGIDFVVLEKADDVG 42
|
|
| Pyr_redox |
pfam00070 |
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ... |
2-33 |
3.46e-04 |
|
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Pssm-ID: 425450 [Multi-domain] Cd Length: 80 Bit Score: 39.11 E-value: 3.46e-04
10 20 30
....*....|....*....|....*....|..
gi 517056601 2 KVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQS 33
Cdd:pfam00070 1 RVVVVGGGYIGLELAGALARLGSKVTVVERRD 32
|
|
| PRK07208 |
PRK07208 |
hypothetical protein; Provisional |
2-31 |
3.58e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 235967 [Multi-domain] Cd Length: 479 Bit Score: 42.57 E-value: 3.58e-04
10 20 30
....*....|....*....|....*....|
gi 517056601 2 KVIVLGAGIVGVTSAYQLAKAGHDVTVVDR 31
Cdd:PRK07208 6 SVVIIGAGPAGLTAAYELLKRGYPVTVLEA 35
|
|
| PRK12771 |
PRK12771 |
putative glutamate synthase (NADPH) small subunit; Provisional |
2-35 |
3.61e-04 |
|
putative glutamate synthase (NADPH) small subunit; Provisional
Pssm-ID: 237198 [Multi-domain] Cd Length: 564 Bit Score: 42.55 E-value: 3.61e-04
10 20 30
....*....|....*....|....*....|....
gi 517056601 2 KVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQSGP 35
Cdd:PRK12771 139 RVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172
|
|
| TrkA |
COG0569 |
Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion ... |
1-31 |
4.11e-04 |
|
Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion transport and metabolism, Signal transduction mechanisms];
Pssm-ID: 440335 [Multi-domain] Cd Length: 296 Bit Score: 41.98 E-value: 4.11e-04
10 20 30
....*....|....*....|....*....|.
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVDR 31
Cdd:COG0569 96 MHVIIIGAGRVGRSLARELEEEGHDVVVIDK 126
|
|
| COG3573 |
COG3573 |
Predicted oxidoreductase [General function prediction only]; |
3-33 |
4.74e-04 |
|
Predicted oxidoreductase [General function prediction only];
Pssm-ID: 442794 [Multi-domain] Cd Length: 551 Bit Score: 42.47 E-value: 4.74e-04
10 20 30
....*....|....*....|....*....|.
gi 517056601 3 VIVLGAGIVGVTSAYQLAKAGHDVTVVDRQS 33
Cdd:COG3573 8 VIVVGAGLAGLVAAAELADAGRRVLLLDQEP 38
|
|
| PRK07588 |
PRK07588 |
FAD-binding domain; |
1-31 |
8.26e-04 |
|
FAD-binding domain;
Pssm-ID: 169028 [Multi-domain] Cd Length: 391 Bit Score: 41.26 E-value: 8.26e-04
10 20 30
....*....|....*....|....*....|.
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVDR 31
Cdd:PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIER 31
|
|
| PRK11749 |
PRK11749 |
dihydropyrimidine dehydrogenase subunit A; Provisional |
1-31 |
8.28e-04 |
|
dihydropyrimidine dehydrogenase subunit A; Provisional
Pssm-ID: 236967 [Multi-domain] Cd Length: 457 Bit Score: 41.32 E-value: 8.28e-04
10 20 30
....*....|....*....|....*....|.
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVDR 31
Cdd:PRK11749 141 KKVAVIGAGPAGLTAAHRLARKGYDVTIFEA 171
|
|
| Ndh |
COG1252 |
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]; |
1-33 |
8.30e-04 |
|
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
Pssm-ID: 440864 [Multi-domain] Cd Length: 386 Bit Score: 41.27 E-value: 8.30e-04
10 20 30
....*....|....*....|....*....|....*.
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAK---AGHDVTVVDRQS 33
Cdd:COG1252 2 KRIVIVGGGFAGLEAARRLRKklgGDAEVTLIDPNP 37
|
|
| UDPG_MGDP_dh_N |
pfam03721 |
UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; The UDP-glucose/GDP-mannose ... |
1-30 |
8.68e-04 |
|
UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Pssm-ID: 397677 [Multi-domain] Cd Length: 186 Bit Score: 39.92 E-value: 8.68e-04
10 20 30
....*....|....*....|....*....|
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVD 30
Cdd:pfam03721 1 MKISVIGLGYVGLPTAACLAEIGHDVIGVD 30
|
|
| 3HCDH_N |
pfam02737 |
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; This family also includes lambda ... |
2-31 |
1.01e-03 |
|
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; This family also includes lambda crystallin.
Pssm-ID: 397037 [Multi-domain] Cd Length: 180 Bit Score: 39.83 E-value: 1.01e-03
10 20 30
....*....|....*....|....*....|
gi 517056601 2 KVIVLGAGIVGVTSAYQLAKAGHDVTVVDR 31
Cdd:pfam02737 1 KVAVIGAGTMGAGIAQVFALAGLEVVLVDI 30
|
|
| Ugd |
COG1004 |
UDP-glucose 6-dehydrogenase [Cell wall/membrane/envelope biogenesis]; |
1-30 |
1.19e-03 |
|
UDP-glucose 6-dehydrogenase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440628 [Multi-domain] Cd Length: 436 Bit Score: 40.78 E-value: 1.19e-03
10 20 30
....*....|....*....|....*....|
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVD 30
Cdd:COG1004 1 MKIAVIGTGYVGLVTAACLAELGHEVTCVD 30
|
|
| PRK05868 |
PRK05868 |
FAD-binding protein; |
2-35 |
1.27e-03 |
|
FAD-binding protein;
Pssm-ID: 180297 [Multi-domain] Cd Length: 372 Bit Score: 40.74 E-value: 1.27e-03
10 20 30
....*....|....*....|....*....|....
gi 517056601 2 KVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQSGP 35
Cdd:PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36
|
|
| FadB |
COG1250 |
3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]; 3-hydroxyacyl-CoA ... |
1-31 |
1.77e-03 |
|
3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]; 3-hydroxyacyl-CoA dehydrogenase is part of the Pathway/BioSystem: Fatty acid biosynthesis
Pssm-ID: 440862 [Multi-domain] Cd Length: 281 Bit Score: 40.09 E-value: 1.77e-03
10 20 30
....*....|....*....|....*....|.
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVDR 31
Cdd:COG1250 3 KKVAVIGAGTMGAGIAAVFANAGYEVVLLDI 33
|
|
| NDP-sugDHase |
TIGR03026 |
nucleotide sugar dehydrogenase; Enzymes in this family catalyze the NAD-dependent ... |
1-30 |
1.80e-03 |
|
nucleotide sugar dehydrogenase; Enzymes in this family catalyze the NAD-dependent alcohol-to-acid oxidation of nucleotide-linked sugars. Examples include UDP-glucose 6-dehydrogenase (1.1.1.22), GDP-mannose 6-dehydrogenase (1.1.1.132), UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136), UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase, and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. These enzymes are most often involved in the biosynthesis of polysaccharides and are often found in operons devoted to that purpose. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Pssm-ID: 274399 [Multi-domain] Cd Length: 409 Bit Score: 40.29 E-value: 1.80e-03
10 20 30
....*....|....*....|....*....|
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVD 30
Cdd:TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHDVTGVD 30
|
|
| FadH2 |
COG0446 |
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ... |
2-35 |
2.39e-03 |
|
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];
Pssm-ID: 440215 [Multi-domain] Cd Length: 322 Bit Score: 39.79 E-value: 2.39e-03
10 20 30
....*....|....*....|....*....|....
gi 517056601 2 KVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQSGP 35
Cdd:COG0446 126 RAVVIGGGPIGLELAEALRKRGLKVTLVERAPRL 159
|
|
| PRK14619 |
PRK14619 |
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional |
1-44 |
2.69e-03 |
|
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Pssm-ID: 237771 [Multi-domain] Cd Length: 308 Bit Score: 39.59 E-value: 2.69e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQSGPALETSFANA 44
Cdd:PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGLSLAAVLADA 48
|
|
| Pyr_redox_2 |
pfam07992 |
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ... |
1-47 |
2.76e-03 |
|
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Pssm-ID: 400379 [Multi-domain] Cd Length: 301 Bit Score: 39.61 E-value: 2.76e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQS-----GPALETSFANAGEV 47
Cdd:pfam07992 1 YDVVVIGGGPAGLAAALTLAQLGGKVTLIEDEGtcpygGCVLSKALLGAAEA 52
|
|
| PRK06129 |
PRK06129 |
3-hydroxyacyl-CoA dehydrogenase; Validated |
1-34 |
4.21e-03 |
|
3-hydroxyacyl-CoA dehydrogenase; Validated
Pssm-ID: 235706 [Multi-domain] Cd Length: 308 Bit Score: 38.87 E-value: 4.21e-03
10 20 30
....*....|....*....|....*....|....
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQSG 34
Cdd:PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36
|
|
| Pyr_redox_3 |
pfam13738 |
Pyridine nucleotide-disulphide oxidoreductase; |
2-34 |
4.22e-03 |
|
Pyridine nucleotide-disulphide oxidoreductase;
Pssm-ID: 404603 [Multi-domain] Cd Length: 296 Bit Score: 38.74 E-value: 4.22e-03
10 20 30
....*....|....*....|....*....|...
gi 517056601 2 KVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQSG 34
Cdd:pfam13738 157 KVVVIGGYNSAVDAALELVRKGARVTVLYRGSE 189
|
|
| PRK05335 |
PRK05335 |
tRNA (uracil-5-)-methyltransferase Gid; Reviewed |
1-27 |
4.80e-03 |
|
tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Pssm-ID: 235416 Cd Length: 436 Bit Score: 38.97 E-value: 4.80e-03
10 20
....*....|....*....|....*..
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVT 27
Cdd:PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVE 29
|
|
| PRK12814 |
PRK12814 |
putative NADPH-dependent glutamate synthase small subunit; Provisional |
2-30 |
4.97e-03 |
|
putative NADPH-dependent glutamate synthase small subunit; Provisional
Pssm-ID: 139246 [Multi-domain] Cd Length: 652 Bit Score: 39.33 E-value: 4.97e-03
10 20
....*....|....*....|....*....
gi 517056601 2 KVIVLGAGIVGVTSAYQLAKAGHDVTVVD 30
Cdd:PRK12814 195 KVAIIGAGPAGLTAAYYLLRKGHDVTIFD 223
|
|
| PRK08401 |
PRK08401 |
L-aspartate oxidase; Provisional |
1-45 |
6.54e-03 |
|
L-aspartate oxidase; Provisional
Pssm-ID: 236259 [Multi-domain] Cd Length: 466 Bit Score: 38.63 E-value: 6.54e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVdrqsGPALETS---FANAG 45
Cdd:PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTII----GPGIKKSnsyLAQAG 45
|
|
| NirB |
COG1251 |
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion]; |
2-35 |
6.58e-03 |
|
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
Pssm-ID: 440863 [Multi-domain] Cd Length: 402 Bit Score: 38.58 E-value: 6.58e-03
10 20 30
....*....|....*....|....*....|....
gi 517056601 2 KVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQSGP 35
Cdd:COG1251 144 RVVVIGGGLIGLEAAAALRKRGLEVTVVERAPRL 177
|
|
| MurD |
COG0771 |
UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; ... |
1-61 |
6.77e-03 |
|
UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramoylalanine-D-glutamate ligase is part of the Pathway/BioSystem: Mureine biosynthesis
Pssm-ID: 440534 [Multi-domain] Cd Length: 445 Bit Score: 38.52 E-value: 6.77e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517056601 1 MKVIVLGAGIVGVTSAYQLAKAGHDVTVVD-RQSGPALETSFANAG-EVSFG--YCSPWAA-------PGIP 61
Cdd:COG0771 5 KKVLVLGLGKSGLAAARLLAKLGAEVTVSDdRPAPELAAAELEAPGvEVVLGehPEELLDGadlvvksPGIP 76
|
|
| PRK04965 |
PRK04965 |
NADH:flavorubredoxin reductase NorW; |
2-35 |
8.90e-03 |
|
NADH:flavorubredoxin reductase NorW;
Pssm-ID: 179902 [Multi-domain] Cd Length: 377 Bit Score: 37.97 E-value: 8.90e-03
10 20 30
....*....|....*....|....*....|....
gi 517056601 2 KVIVLGAGIVGVTSAYQLAKAGHDVTVVDRQSGP 35
Cdd:PRK04965 143 RVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL 176
|
|
| mhpA |
PRK06183 |
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase; |
3-35 |
9.14e-03 |
|
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;
Pssm-ID: 235727 [Multi-domain] Cd Length: 500 Bit Score: 38.35 E-value: 9.14e-03
10 20 30
....*....|....*....|....*....|...
gi 517056601 3 VIVLGAGIVGVTSAYQLAKAGHDVTVVDRQSGP 35
Cdd:PRK06183 13 VVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL 45
|
|
| |
