NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|517056575|ref|WP_018245393|]
View 

DUF1236 domain-containing protein [Rhizobium leguminosarum]

Protein Classification

DUF1236 domain-containing protein( domain architecture ID 10536252)

DUF1236 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF1236 pfam06823
Protein of unknown function (DUF1236); This family contains a number of hypothetical bacterial ...
 222-291 3.43e-14

Protein of unknown function (DUF1236); This family contains a number of hypothetical bacterial proteins of unknown function. Some family members contain more than one copy of the region represented by this family.


:

Pssm-ID: 429137  Cd Length: 64  Bit Score: 66.11  E-value: 3.43e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056575  222 VVKEVHVEPVKeVDFTVSVGVKIPKKVRLEPLPPRIVkiVPQYEsyrfFILADGRIVIVDPSAFTIVYII 291
Cdd:pfam06823   1 YVREQPVPPVT-VEGEVSVGAVLPETVELYPVPDDIG--IPGYR----YVVVNDRTVIVDPRTRRVVQII 63
 
Name Accession Description Interval E-value
DUF1236 pfam06823
Protein of unknown function (DUF1236); This family contains a number of hypothetical bacterial ...
 222-291 3.43e-14

Protein of unknown function (DUF1236); This family contains a number of hypothetical bacterial proteins of unknown function. Some family members contain more than one copy of the region represented by this family.


Pssm-ID: 429137  Cd Length: 64  Bit Score: 66.11  E-value: 3.43e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056575  222 VVKEVHVEPVKeVDFTVSVGVKIPKKVRLEPLPPRIVkiVPQYEsyrfFILADGRIVIVDPSAFTIVYII 291
Cdd:pfam06823   1 YVREQPVPPVT-VEGEVSVGAVLPETVELYPVPDDIG--IPGYR----YVVVNDRTVIVDPRTRRVVQII 63
 
Name Accession Description Interval E-value
DUF1236 pfam06823
Protein of unknown function (DUF1236); This family contains a number of hypothetical bacterial ...
 222-291 3.43e-14

Protein of unknown function (DUF1236); This family contains a number of hypothetical bacterial proteins of unknown function. Some family members contain more than one copy of the region represented by this family.


Pssm-ID: 429137  Cd Length: 64  Bit Score: 66.11  E-value: 3.43e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517056575  222 VVKEVHVEPVKeVDFTVSVGVKIPKKVRLEPLPPRIVkiVPQYEsyrfFILADGRIVIVDPSAFTIVYII 291
Cdd:pfam06823   1 YVREQPVPPVT-VEGEVSVGAVLPETVELYPVPDDIG--IPGYR----YVVVNDRTVIVDPRTRRVVQII 63
DUF1668 pfam07893
Protein of unknown function (DUF1668); The hypothetical proteins found in this family are ...
 231-289 3.56e-03

Protein of unknown function (DUF1668); The hypothetical proteins found in this family are expressed by Oryza sativa and are of unknown function.


Pssm-ID: 369579 [Multi-domain]  Cd Length: 330  Bit Score: 38.51  E-value: 3.56e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517056575  231 VKEVDFTVSV--GVKIPKKVRLEPLPPRIVKIVPQYESYR----FFILADGRIVIVDPSAFTIVY 289
Cdd:pfam07893  18 LRKVDSAPSGpgAGADALLMEDARLPPPILRFEASPASSGggmsFAALVGDKIVGVDGSGRTLLY 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH