|
Name |
Accession |
Description |
Interval |
E-value |
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
4-249 |
1.67e-90 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 276.13 E-value: 1.67e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGI 83
Cdd:COG1129 2 EPLLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDAQAAGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 ETVYQNLALSPALSIADNMFLGREIRKPGvlgsmfrMLDRPAMEKLARNKLSELGLmtiqNIN--QAVETLSGGQRQGVA 161
Cdd:COG1129 82 AIIHQELNLVPNLSVAENIFLGREPRRGG-------LIDWRAMRRRARELLARLGL----DIDpdTPVGDLSVAQQQLVE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 162 VARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKEYTMS 241
Cdd:COG1129 151 IARALSRDARVLILDEPTASLTEREVERLFRIIRRLKAQGVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAELTED 230
|
....*...
gi 517055771 242 DAVAFMTG 249
Cdd:COG1129 231 ELVRLMVG 238
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
7-228 |
4.87e-71 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 214.99 E-value: 4.87e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGIETV 86
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YQnlalspalsiadnmflgreirkpgvlgsmfrmldrpameklarnklselglmtiqninqavetLSGGQRQGVAVARAA 166
Cdd:cd03216 81 YQ---------------------------------------------------------------LSVGERQMVEIARAL 97
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517055771 167 AFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGR 159
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
2-260 |
5.46e-62 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 202.56 E-value: 5.46e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 2 AREPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREA 81
Cdd:COG3845 1 MMPPALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRIRSPRDAIAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 82 GIETVYQNLALSPALSIADNMFLGREIRKPGVlgsmfrmLDRPAMEKLARNKLSELGLmtiqNIN--QAVETLSGGQRQG 159
Cdd:COG3845 81 GIGMVHQHFMLVPNLTVAENIVLGLEPTKGGR-------LDRKAARARIRELSERYGL----DVDpdAKVEDLSVGEQQR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 160 VAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKEYT 239
Cdd:COG3845 150 VEILKALYRGARILILDEPTAVLTPQEADELFEILRRLAAEGKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDTAETS 229
|
250 260
....*....|....*....|.
gi 517055771 240 MSDAVAFMTGAKAVPTEPVAA 260
Cdd:COG3845 230 EEELAELMVGREVLLRVEKAP 250
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
7-222 |
1.28e-56 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 181.10 E-value: 1.28e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGIETV 86
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YQNLALSPALSIADNMFLGREIRKPGVLGSMFRMLDRPAMEKLARNKLSELGLMTIQniNQAVETLSGGQRQGVAVARAA 166
Cdd:cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLA--DRPAGELSYGQQRRLEIARAL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 167 AFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIH 222
Cdd:cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVT 214
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
4-221 |
4.60e-55 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 177.54 E-value: 4.60e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGI 83
Cdd:COG0411 2 DPLLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARLGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 ETVYQNLALSPALSIADNMFLGREIR-KPGVLGSMFRMLDRPAMEKLARNK----LSELGLMTIQniNQAVETLSGGQRQ 158
Cdd:COG0411 82 ARTFQNPRLFPELTVLENVLVAAHARlGRGLLAALLRLPRARREEREARERaeelLERVGLADRA--DEPAGNLSYGQQR 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517055771 159 GVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRA-RGLPIVLISHNMPHVFEVADRI 221
Cdd:COG0411 160 RLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDeRGITILLIEHDMDLVMGLADRI 223
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
4-249 |
5.31e-54 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 181.67 E-value: 5.31e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGaVTPD---EGVITLEGRQVQFRSPMEARE 80
Cdd:PRK13549 3 EYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHgtyEGEIIFEGEELQASNIRDTER 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 81 AGIETVYQNLALSPALSIADNMFLGREIRKPGVLgsmfrmlDRPAMEKLARNKLSELGLMTiqNINQAVETLSGGQRQGV 160
Cdd:PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIM-------DYDAMYLRAQKLLAQLKLDI--NPATPVGNLGLGQQQLV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 161 AVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKEYTM 240
Cdd:PRK13549 153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE 232
|
....*....
gi 517055771 241 SDAVAFMTG 249
Cdd:PRK13549 233 DDIITMMVG 241
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
4-227 |
3.12e-52 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 177.12 E-value: 3.12e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGI 83
Cdd:PRK10762 2 QALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 ETVYQNLALSPALSIADNMFLGREIRKPgvlgsmFRMLDRPAMEKLARNKLSELGLMtiQNINQAVETLSGGQRQGVAVA 163
Cdd:PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNR------FGRIDWKKMYAEADKLLARLNLR--FSSDKLVGELSIGEQQMVEIA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517055771 164 RAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLG 227
Cdd:PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDG 217
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
4-229 |
1.51e-51 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 175.10 E-value: 1.51e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGI 83
Cdd:PRK11288 2 SPYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 ETVYQNLALSPALSIADNMFLGReirkpgvLGSMFRMLDRPAMEKLARNKLSELGLmtiqNI--NQAVETLSGGQRQGVA 161
Cdd:PRK11288 82 AIIYQELHLVPEMTVAENLYLGQ-------LPHKGGIVNRRLLNYEAREQLEHLGV----DIdpDTPLKYLSIGQRQMVE 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517055771 162 VARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRR 229
Cdd:PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRY 218
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
7-237 |
7.52e-48 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 158.30 E-value: 7.52e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfRSPMEAREA-GIet 85
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVA-RDPAEVRRRiGY-- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 86 VYQNLALSPALSIADNM-FLGReirkpgvlgsmFRMLDRPAMEKLARNKLSELGLMTIQniNQAVETLSGGQRQGVAVAR 164
Cdd:COG1131 78 VPQEPALYPDLTVRENLrFFAR-----------LYGLPRKEARERIDELLELFGLTDAA--DRKVGTLSGGMKQRLGLAL 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517055771 165 AAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKE 237
Cdd:COG1131 145 ALLHDPELLILDEPTSGLDPEARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDE 217
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
6-257 |
2.88e-47 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 163.84 E-value: 2.88e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 6 LLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGaVTPD---EGVITLEGRQVQFRSPMEAREAG 82
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHgtwDGEIYWSGSPLKASNIRDTERAG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 83 IETVYQNLALSPALSIADNMFLGREIRKPGVLgsmfrmLDRPAMEKLARNKLSELGLmTIQNINQAVETLSGGQRQGVAV 162
Cdd:TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGR------MAYNAMYLRAKNLLRELQL-DADNVTRPVGDYGGGQQQLVEI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 163 ARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKEYTMSD 242
Cdd:TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSEDD 232
|
250
....*....|....*...
gi 517055771 243 AVAFMTGAKAV---PTEP 257
Cdd:TIGR02633 233 IITMMVGREITslyPHEP 250
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
6-237 |
8.89e-47 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 162.65 E-value: 8.89e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 6 LLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGaVTPD---EGVITLEGRQVQFRSPMEAREAG 82
Cdd:NF040905 1 ILEMRGITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSG-VYPHgsyEGEILFDGEVCRFKDIRDSEALG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 83 IETVYQNLALSPALSIADNMFLGREIRKPGVLgsmfrmlDRPAMEKLARNKLSELGLMtiQNINQAVETLSGGQRQGVAV 162
Cdd:NF040905 80 IVIIHQELALIPYLSIAENIFLGNERAKRGVI-------DWNETNRRARELLAKVGLD--ESPDTLVTDIGVGKQQLVEI 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517055771 163 ARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKE 237
Cdd:NF040905 151 AKALSKDVKLLILDEPTAALNEEDSAALLDLLLELKAQGITSIIISHKLNEIRRVADSITVLRDGRTIETLDCRA 225
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
2-228 |
3.52e-46 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 161.22 E-value: 3.52e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 2 AREPLLTARGLVKRY-----GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPM 76
Cdd:COG1123 256 AAEPLLEVRNLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRR 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 77 EAREAG--IETVYQN--LALSPALSIadnmflGREIRKPGVLgsmFRMLDRPAMEKLARNKLSELGLMTiQNINQAVETL 152
Cdd:COG1123 336 SLRELRrrVQMVFQDpySSLNPRMTV------GDIIAEPLRL---HGLLSRAERRERVAELLERVGLPP-DLADRYPHEL 405
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 153 SGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:COG1123 406 SGGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRElGLTYLFISHDLAVVRYIADRVAVMYDGR 482
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
4-249 |
5.57e-46 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 160.72 E-value: 5.57e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGI 83
Cdd:PRK09700 3 TPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 ETVYQNLALSPALSIADNMFLGREIRKPgVLGsmFRMLDRPAMEKLARNKLSELGLMTiqNINQAVETLSGGQRQGVAVA 163
Cdd:PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKK-VCG--VNIIDWREMRVRAAMMLLRVGLKV--DLDEKVANLSISHKQMLEIA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 164 RAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKEYTMSDA 243
Cdd:PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDI 237
|
....*.
gi 517055771 244 VAFMTG 249
Cdd:PRK09700 238 VRLMVG 243
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
5-221 |
2.22e-45 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 152.52 E-value: 2.22e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 5 PLLTARGLVKRY-GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEARE--A 81
Cdd:COG3638 1 PMLELRNLSKRYpGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALRRlrR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 82 GIETVYQNLALSPALSIADNMFLGREIRKPGvLGSMFRMLdRPAMEKLARNKLSELGLmtIQNINQAVETLSGGQRQGVA 161
Cdd:COG3638 81 RIGMIFQQFNLVPRLSVLTNVLAGRLGRTST-WRSLLGLF-PPEDRERALEALERVGL--ADKAYQRADQLSGGQQQRVA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517055771 162 VARAAAFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRI 221
Cdd:COG3638 157 IARALVQEPKLILADEPVASLDPKTARQVMDLLRRIaREDGITVVVNLHQVDLARRYADRI 217
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
10-249 |
8.33e-44 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 154.50 E-value: 8.33e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 10 RGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGIETVYQN 89
Cdd:PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 90 LALSPALSIADNMFLGREIRKpgvlgSMFrmLDRPAMEKLARNKLSELGLmtiqNIN--QAVETLSGGQRQGVAVARAAA 167
Cdd:PRK10982 82 LNLVLQRSVMDNMWLGRYPTK-----GMF--VDQDKMYRDTKAIFDELDI----DIDprAKVATLSVSQMQMIEIAKAFS 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 168 FGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKEYTMSDAVAFM 247
Cdd:PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMDKIIAMM 230
|
..
gi 517055771 248 TG 249
Cdd:PRK10982 231 VG 232
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
7-228 |
2.41e-43 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 146.43 E-value: 2.41e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGIETV 86
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YQNLALSPALSIADNMFLGREIRKPG----VLGSMFRMLDRpameklarnkLSELglmtiqnINQAVETLSGGQRQGVAV 162
Cdd:cd03224 81 PEGRRIFPELTVEENLLLGAYARRRAkrkaRLERVYELFPR----------LKER-------RKQLAGTLSGGEQQMLAI 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 163 ARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:cd03224 144 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGR 209
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
10-225 |
4.68e-43 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 145.30 E-value: 4.68e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 10 RGLVKRYGRVT--ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREaGIETVY 87
Cdd:cd03225 3 KNLSFSYPDGArpALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRR-KVGLVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 88 QNlalspalsiADNMFLGREIRKPGVLGSMFRMLDRPAMEKLARNKLSELGLMTIQNinQAVETLSGGQRQGVAVARAAA 167
Cdd:cd03225 82 QN---------PDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD--RSPFTLSGGQKQRVAIAGVLA 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 517055771 168 FGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADR-IHIHR 225
Cdd:cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRvIVLED 209
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
7-221 |
2.57e-42 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 144.01 E-value: 2.57e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRY-GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAR-EAGIe 84
Cdd:COG1122 1 IELENLSFSYpGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRELRrKVGL- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 85 tVYQNlalspalsiADNMFLGREIRK-----PGVLGsmfrmLDRPAMEKLARNKLSELGLMTIQNinQAVETLSGGQRQG 159
Cdd:COG1122 80 -VFQN---------PDDQLFAPTVEEdvafgPENLG-----LPREEIRERVEEALELVGLEHLAD--RPPHELSGGQKQR 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517055771 160 VAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRI 221
Cdd:COG1122 143 VAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRV 204
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
6-228 |
4.73e-42 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 143.42 E-value: 4.73e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 6 LLTARGLVKRY----GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSP--MEAR 79
Cdd:cd03257 1 LLEVKNLSVSFptggGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRrlRKIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 80 EAGIETVYQN--LALSPALSIadnmflGREIRKPgvLGSMFRMLDRPAMEKLARNKLSELGLmTIQNINQAVETLSGGQR 157
Cdd:cd03257 81 RKEIQMVFQDpmSSLNPRMTI------GEQIAEP--LRIHGKLSKKEARKEAVLLLLVGVGL-PEEVLNRYPHELSGGQR 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517055771 158 QGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRA-RGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEeLGLTLLFITHDLGVVAKIADRVAVMYAGK 223
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
4-228 |
6.92e-42 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 142.87 E-value: 6.92e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRYG----RVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQV--------- 70
Cdd:COG1136 2 SPLLELRNLTKSYGtgegEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDIsslserela 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 71 QFRspmeAREAGIetVYQNLALSPALSIADNMFLGREIRKpgvlgsmfrmLDRPAMEKLARNKLSELGLMTIQN--INQa 148
Cdd:COG1136 82 RLR----RRHIGF--VFQFFNLLPELTALENVALPLLLAG----------VSRKERRERARELLERVGLGDRLDhrPSQ- 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 149 vetLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILD-VRARGLPIVLISHNmPHVFEVADRIHIHRLG 227
Cdd:COG1136 145 ---LSGGQQQRVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRElNRELGTTIVMVTHD-PELAARADRVIRLRDG 220
|
.
gi 517055771 228 R 228
Cdd:COG1136 221 R 221
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
7-228 |
7.75e-42 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 143.09 E-value: 7.75e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGR-VTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREA--GI 83
Cdd:cd03256 1 IEVENLSKTYPNgKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLrrQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 ETVYQNLALSPALSIADNMFLGREIRKPgVLGSMFRMLDrPAMEKLARNKLSELGLmtIQNINQAVETLSGGQRQGVAVA 163
Cdd:cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRS-TWRSLFGLFP-KEEKQRALAALERVGL--LDKAYQRADQLSGGQQQRVAIA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 164 RAAAFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRInREEGITVIVSLHQVDLAREYADRIVGLKDGR 222
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
7-228 |
2.67e-41 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 140.73 E-value: 2.67e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPmeaREAGIETV 86
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP---ERRNIGMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YQNLALSPALSIADNMFLGREIRKpgvlgsmfrmLDRPAMEKLARNKLSELGLMTIqnINQAVETLSGGQRQGVAVARAA 166
Cdd:cd03259 78 FQDYALFPHLTVAENIAFGLKLRG----------VPKAEIRARVRELLELVGLEGL--LNRYPHELSGGQQQRVALARAL 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517055771 167 AFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELqRELGITTIYVTHDQEEALALADRIAVMNEGR 208
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
6-223 |
7.54e-41 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 140.76 E-value: 7.54e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 6 LLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfRSPMEAREAgIET 85
Cdd:COG4555 1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVR-KEPREARRQ-IGV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 86 VYQNLALSPALSIADNmflgreIRKPGVLGSMFRMLDRPAMEKLARnklsELGLMTIqnINQAVETLSGGQRQGVAVARA 165
Cdd:COG4555 79 LPDERGLYDRLTVREN------IRYFAELYGLFDEELKKRIEELIE----LLGLEEF--LDRRVGELSTGMKKKVALARA 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 517055771 166 AAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHI 223
Cdd:COG4555 147 LVHDPKVLLLDEPTNGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVI 204
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
2-221 |
1.88e-40 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 139.34 E-value: 1.88e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 2 AREPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREA 81
Cdd:COG1127 1 MSEPMIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELYEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 82 ----GIetVYQNLALSPALSIADN-MFLGREirkpgvlgsmFRMLDRPAMEKLARNKLSELGLMTIQNINQAvEtLSGGQ 156
Cdd:COG1127 81 rrriGM--LFQGGALFDSLTVFENvAFPLRE----------HTDLSEAEIRELVLEKLELVGLPGAADKMPS-E-LSGGM 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 157 RQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVR-ARGLPIVLISHNMPHVFEVADRI 221
Cdd:COG1127 147 RKRVALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRdELGLTSVVVTHDLDSAFAIADRV 212
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
7-223 |
2.00e-40 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 137.53 E-value: 2.00e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVqFRSPMEAREAgIETV 86
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDI-KKEPEEVKRR-IGYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YQNLALSPALSIADNMflgreirkpgvlgsmfrmldrpameklarnklselglmtiqninqaveTLSGGQRQGVAVARAA 166
Cdd:cd03230 79 PEEPSLYENLTVRENL------------------------------------------------KLSGGMKQRLALAQAL 110
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 167 AFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHI 223
Cdd:cd03230 111 LHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAI 167
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
6-235 |
3.06e-40 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 139.41 E-value: 3.06e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 6 LLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPME-AREAGIe 84
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRElARRIAY- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 85 tVYQNLALSPALSIADNMFLGreiRKPGVlgSMFRMLDrPAMEKLARNKLSELGLMTIQniNQAVETLSGGQRQGVAVAR 164
Cdd:COG1120 80 -VPQEPPAPFGLTVRELVALG---RYPHL--GLFGRPS-AEDREAVEEALERTGLEHLA--DRPVDELSGGERQRVLIAR 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517055771 165 AAAFGSKVIIMDEPTAALGVKESRRVLELILD-VRARGLPIVLISHNMPHVFEVADRI------HIHRLGRRLTVIDP 235
Cdd:COG1120 151 ALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRlARERGRTVVMVLHDLNLAARYADRLvllkdgRIVAQGPPEEVLTP 228
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
7-221 |
3.79e-40 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 138.01 E-value: 3.79e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYG----RVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQV-----QFRSPME 77
Cdd:cd03255 1 IELKNLSKTYGgggeKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDIsklseKELAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 78 AREAGIetVYQNLALSPALSIADNMFLGREIRKpgvlgsmfrmLDRPAMEKLARNKLSELGLmtIQNINQAVETLSGGQR 157
Cdd:cd03255 81 RRHIGF--VFQSFNLLPDLTALENVELPLLLAG----------VPKKERRERAEELLERVGL--GDRLNHYPSELSGGQQ 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517055771 158 QGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNmPHVFEVADRI 221
Cdd:cd03255 147 QRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELnKEAGTTIVVVTHD-PELAEYADRI 210
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-235 |
4.50e-40 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 138.68 E-value: 4.50e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 1 MAREPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRqvqfrsPMEARE 80
Cdd:COG1121 1 MMMMPAIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGK------PPRRAR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 81 AGIETVYQNLALSPA--LSIADNMFLGReIRKPGVLGSMFRMLDRPAMEKLARNKLSELglmtiqnINQAVETLSGGQRQ 158
Cdd:COG1121 75 RRIGYVPQRAEVDWDfpITVRDVVLMGR-YGRRGLFRRPSRADREAVDEALERVGLEDL-------ADRPIGELSGGQQQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 159 GVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRI-----HIHRLGRRLTVI 233
Cdd:COG1121 147 RVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDRVlllnrGLVAHGPPEEVL 226
|
..
gi 517055771 234 DP 235
Cdd:COG1121 227 TP 228
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
10-221 |
4.24e-39 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 135.71 E-value: 4.24e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 10 RGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGIET--VY 87
Cdd:cd03261 4 RGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMgmLF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 88 QNLALSPALSIADN-MFLGREIRKpgvlgsmfrmLDRPAMEKLARNKLSELGLmtIQNINQAVETLSGGQRQGVAVARAA 166
Cdd:cd03261 84 QSGALFDSLTVFENvAFPLREHTR----------LSEEEIREIVLEKLEAVGL--RGAEDLYPAELSGGMKKRVALARAL 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 167 AFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRI 221
Cdd:cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKElGLTSIMVTHDLDTAFAIADRI 207
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
4-228 |
7.03e-39 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 135.49 E-value: 7.03e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGI 83
Cdd:COG0410 1 MPMLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 ETVYQNLALSPALSIADNMFLGREIRK--PGVLGSMFRMLDR-PAMEKLArnklselglmtiqniNQAVETLSGGQRQGV 160
Cdd:COG0410 81 GYVPEGRRIFPSLTVEENLLLGAYARRdrAEVRADLERVYELfPRLKERR---------------RQRAGTLSGGEQQML 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517055771 161 AVARAAAFGSKVIIMDEPTAALG---VKEsrrVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:COG0410 146 AIGRALMSRPKLLLLDEPSLGLApliVEE---IFEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGR 213
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
4-252 |
2.88e-38 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 139.77 E-value: 2.88e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLvkryGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGI 83
Cdd:COG1129 254 EVVLEVEGL----SVGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRSPRDAIRAGI 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 etVY-----QNLALSPALSIADNMFLG--REIRKPGVlgsmfrmLDRPAMEKLARNKLSELGLMTiQNINQAVETLSGGQ 156
Cdd:COG1129 330 --AYvpedrKGEGLVLDLSIRENITLAslDRLSRGGL-------LDRRRERALAEEYIKRLRIKT-PSPEQPVGNLSGGN 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 157 RQGVAVARAAAFGSKVIIMDEPTAalGV----KESrrVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTV 232
Cdd:COG1129 400 QQKVVLAKWLATDPKVLILDEPTR--GIdvgaKAE--IYRLIRELAAEGKAVIVISSELPELLGLSDRILVMREGRIVGE 475
|
250 260
....*....|....*....|
gi 517055771 233 IDPKEYTMSDAVAFMTGAKA 252
Cdd:COG1129 476 LDREEATEEAIMAAATGGAA 495
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
15-227 |
4.09e-38 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 132.66 E-value: 4.09e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 15 RYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRqvqfrsPMEAREAGIETVYQNLALSP 94
Cdd:cd03235 8 SYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK------PLEKERKRIGYVPQRRSIDR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 95 A--LSIADNMFLGReIRKPGVLGSMFRMLDRPAMEKLARNKLSELglmtiqnINQAVETLSGGQRQGVAVARAAAFGSKV 172
Cdd:cd03235 82 DfpISVRDVVLMGL-YGHKGLFRRLSKADKAKVDEALERVGLSEL-------ADRQIGELSGGQQQRVLLARALVQDPDL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 173 IIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRI-----HIHRLG 227
Cdd:cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVlllnrTVVASG 213
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-227 |
7.11e-38 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 138.65 E-value: 7.11e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 1 MAREPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEARE 80
Cdd:PRK15439 6 TTAPPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 81 AGIETVYQNLALSPALSIADNMflgreirkpgvlgsMFRMLDRPAMEKLARNKLSELGLMTiqNINQAVETLSGGQRQGV 160
Cdd:PRK15439 86 LGIYLVPQEPLLFPNLSVKENI--------------LFGLPKRQASMQKMKQLLAALGCQL--DLDSSAGSLEVADRQIV 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 161 AVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLG 227
Cdd:PRK15439 150 EILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDG 216
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
22-180 |
1.29e-37 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 129.30 E-value: 1.29e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRsPMEAREAGIETVYQNLALSPALSIADN 101
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDD-ERKSLRKEIGYVFQDPQLFPRLTVREN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 102 MFLGREIRKpgvlgsmfrmLDRPAMEKLARNKLSELGLM--TIQNINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPT 179
Cdd:pfam00005 80 LRLGLLLKG----------LSKREKDARAEEALEKLGLGdlADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPT 149
|
.
gi 517055771 180 A 180
Cdd:pfam00005 150 A 150
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
4-228 |
2.78e-37 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 137.34 E-value: 2.78e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRY--GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPD---EGVITLEGRQVqFRSPMEA 78
Cdd:COG1123 2 TPLLEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDL-LELSEAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 79 REAGIETVYQN--LALSPaLSIADNMFLGREIRKpgvlgsmfrmLDRPAMEKLARNKLSELGLMTIqnINQAVETLSGGQ 156
Cdd:COG1123 81 RGRRIGMVFQDpmTQLNP-VTVGDQIAEALENLG----------LSRAEARARVLELLEAVGLERR--LDRYPHQLSGGQ 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517055771 157 RQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:COG1123 148 RQRVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELqRERGTTVLLITHDLGVVAEIADRVVVMDDGR 220
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
6-221 |
3.81e-37 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 131.27 E-value: 3.81e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 6 LLTARGLVKRYGR-VTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEARE--AG 82
Cdd:TIGR02315 1 MLEVENLSKVYPNgKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKlrRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 83 IETVYQNLALSPALSIADNMFLGREIRKPGvLGSMFRMLDRpAMEKLARNKLSELGLMTIQNinQAVETLSGGQRQGVAV 162
Cdd:TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPT-WRSLLGRFSE-EDKERALSALERVGLADKAY--QRADQLSGGQQQRVAI 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 163 ARAAAFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRI 221
Cdd:TIGR02315 157 ARALAQQPDLILADEPIASLDPKTSKQVMDYLKRInKEDGITVIINLHQVDLAKKYADRI 216
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
10-249 |
7.52e-37 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 130.15 E-value: 7.52e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 10 RGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVqfrSPMEAREAGIETVYQN 89
Cdd:cd03296 6 RNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDA---TDVPVQERNVGFVFQH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 90 LALSPALSIADNMFLGREIRKpgvlgsmfrMLDRPAMEKLARNKLSELGLMTIQNI-NQAVETLSGGQRQGVAVARAAAF 168
Cdd:cd03296 83 YALFRHMTVFDNVAFGLRVKP---------RSERPPEAEIRAKVHELLKLVQLDWLaDRYPAQLSGGQRQRVALARALAV 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 169 GSKVIIMDEPTAALGVK---ESRRVLELILDvrARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKEYTMSDAVA 245
Cdd:cd03296 154 EPKVLLLDEPFGALDAKvrkELRRWLRRLHD--ELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASP 231
|
....
gi 517055771 246 FMTG 249
Cdd:cd03296 232 FVYS 235
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-221 |
1.23e-36 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 132.53 E-value: 1.23e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 1 MArEPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPmEARe 80
Cdd:COG3842 1 MA-MPALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPP-EKR- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 81 aGIETVYQNLALSPALSIADN-MFlGREIRKpgvlgsmfrmLDRPAMEK-----LARNKLSELGlmtiqniNQAVETLSG 154
Cdd:COG3842 78 -NVGMVFQDYALFPHLTVAENvAF-GLRMRG----------VPKAEIRArvaelLELVGLEGLA-------DRYPHQLSG 138
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517055771 155 GQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRI 221
Cdd:COG3842 139 GQQQRVALARALAPEPRVLLLDEPLSALDAKLREEMREELRRLqRELGITFIYVTHDQEEALALADRI 206
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
4-252 |
4.11e-36 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 134.00 E-value: 4.11e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGL-VKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAG 82
Cdd:COG3845 255 EVVLEVENLsVRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLG 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 83 IETV---YQNLALSPALSIADNMFLGReIRKPGVlgSMFRMLDRPAMEKLARNKLSELGLMTiQNINQAVETLSGGQRQG 159
Cdd:COG3845 335 VAYIpedRLGRGLVPDMSVAENLILGR-YRRPPF--SRGGFLDRKAIRAFAEELIEEFDVRT-PGPDTPARSLSGGNQQK 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 160 VAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIH-IHRlGRRLTVIDPKEY 238
Cdd:COG3845 411 VILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDAGAAVLLISEDLDEILALSDRIAvMYE-GRIVGEVPAAEA 489
|
250
....*....|....
gi 517055771 239 TMSDAVAFMTGAKA 252
Cdd:COG3845 490 TREEIGLLMAGVKE 503
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
7-228 |
4.42e-36 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 126.53 E-value: 4.42e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQ-FRSPMEAREAGIET 85
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTdLEDELPPLRRRIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 86 VYQNLALSPALSIADNMFLGreirkpgvlgsmfrmldrpameklarnklselglmtiqninqavetLSGGQRQGVAVARA 165
Cdd:cd03229 81 VFQDFALFPHLTVLENIALG----------------------------------------------LSGGQQQRVALARA 114
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517055771 166 AAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:cd03229 115 LAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQlGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
7-221 |
4.77e-36 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 127.24 E-value: 4.77e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREagiETV 86
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEWRR---QVA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YqnLALSPAL---SIADNMFLGREIRKpgvlgsmfRMLDRPAMEKLarnkLSELGLmTIQNINQAVETLSGGQRQGVAVA 163
Cdd:COG4619 78 Y--VPQEPALwggTVRDNLPFPFQLRE--------RKFDRERALEL----LERLGL-PPDILDKPVERLSGGERQRLALI 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 517055771 164 RAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRI 221
Cdd:COG4619 143 RALLLQPDVLLLDEPTSALDPENTRRVEELLREYLAEeGRAVLWVSHDPEQIERVADRV 201
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
5-225 |
5.45e-36 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 126.82 E-value: 5.45e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 5 PLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGIe 84
Cdd:COG4133 1 MMLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAY- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 85 tVYQNLALSPALSIADNMFLGREIRKPGVlgsmfrmlDRPAMEKLarnkLSELGLMTIQniNQAVETLSGGQRQGVAVAR 164
Cdd:COG4133 80 -LGHADGLKPELTVRENLRFWAALYGLRA--------DREAIDEA----LEAVGLAGLA--DLPVRQLSAGQKRRVALAR 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517055771 165 AAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNmPHVFEVADRIHIHR 225
Cdd:COG4133 145 LLLSPAPLWLLDEPFTALDAAGVALLAELIAAHLARGGAVLLTTHQ-PLELAAARVLDLGD 204
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
2-234 |
6.38e-36 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 128.28 E-value: 6.38e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 2 AREPLLTARGLVKRY----GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPme 77
Cdd:COG1116 3 AAAPALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGP-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 78 arEAGIetVYQNLALSPALSIADNMFLGREIRKpgvlgsmfrmLDRPAMEKLARNKLSELGLmtiqninQAVE-----TL 152
Cdd:COG1116 81 --DRGV--VFQEPALLPWLTVLDNVALGLELRG----------VPKAERRERARELLELVGL-------AGFEdayphQL 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 153 SGGQRQGVAVARAAAFGSKVIIMDEPTAALGVkESRRVL-ELILDV-RARGLPIVLISHNmphVFE---VADRIHI--HR 225
Cdd:COG1116 140 SGGMRQRVAIARALANDPEVLLMDEPFGALDA-LTRERLqDELLRLwQETGKTVLFVTHD---VDEavfLADRVVVlsAR 215
|
....*....
gi 517055771 226 LGRRLTVID 234
Cdd:COG1116 216 PGRIVEEID 224
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
7-221 |
1.43e-35 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 126.11 E-value: 1.43e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSP--MEAReAGIE 84
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKniNELR-QKVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 85 TVYQNLALSPALSIADNMFLG-REIRKpgvlgsmfrmLDRPAMEKLARNKLSELGLmtIQNINQAVETLSGGQRQGVAVA 163
Cdd:cd03262 80 MVFQQFNLFPHLTVLENITLApIKVKG----------MSKAEAEERALELLEKVGL--ADKADAYPAQLSGGQQQRVAIA 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517055771 164 RAAAFGSKVIIMDEPTAALG---VKEsrrVLELILDVRARGLPIVLISHNMPHVFEVADRI 221
Cdd:cd03262 148 RALAMNPKVMLFDEPTSALDpelVGE---VLDVMKDLAEEGMTMVVVTHEMGFAREVADRV 205
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
7-221 |
2.59e-35 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 129.11 E-value: 2.59e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPmeAREAGIETV 86
Cdd:COG1118 3 IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFTNLP--PRERRVGFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YQNLALSPALSIADNMFLGREIRKPgvlgsmfrmlDRPAMEKLARNKLSELGLMTIQN--INQavetLSGGQRQGVAVAR 164
Cdd:COG1118 81 FQHYALFPHMTVAENIAFGLRVRPP----------SKAEIRARVEELLELVQLEGLADryPSQ----LSGGQRQRVALAR 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 165 AAAFGSKVIIMDEPTAALGV---KESRRVLELILDvrARGLPIVLISHNMPHVFEVADRI 221
Cdd:COG1118 147 ALAVEPEVLLLDEPFGALDAkvrKELRRWLRRLHD--ELGGTTVFVTHDQEEALELADRV 204
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
7-229 |
3.91e-35 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 125.28 E-value: 3.91e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYG----RVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPmearEAG 82
Cdd:cd03293 1 LEVRNVSKTYGggggAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGP----DRG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 83 IetVYQNLALSPALSIADNMFLGREIRkpgvlgsmfRMLDRPAMEKlARNKLSELGLmtiqninQAVE-----TLSGGQR 157
Cdd:cd03293 77 Y--VFQQDALLPWLTVLDNVALGLELQ---------GVPKAEARER-AEELLELVGL-------SGFEnayphQLSGGMR 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517055771 158 QGVAVARAAAFGSKVIIMDEPTAALGVkESRRVL-ELILDV-RARGLPIVLISHNMPHVFEVADRIHIhrLGRR 229
Cdd:cd03293 138 QRVALARALAVDPDVLLLDEPFSALDA-LTREQLqEELLDIwRETGKTVLLVTHDIDEAVFLADRVVV--LSAR 208
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
10-221 |
8.28e-35 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 124.62 E-value: 8.28e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 10 RGLVKRYG----RVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREA--GI 83
Cdd:cd03258 5 KNVSKVFGdtggKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKArrRI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 ETVYQNLALSPALSIADNMFLGREIRKpgvlgsmfrmLDRPAMEKLARNKLSELGLMtiQNINQAVETLSGGQRQGVAVA 163
Cdd:cd03258 85 GMIFQHFNLLSSRTVFENVALPLEIAG----------VPKAEIEERVLELLELVGLE--DKADAYPAQLSGGQKQRVGIA 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 517055771 164 RAAAFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRI 221
Cdd:cd03258 153 RALANNPKVLLCDEATSALDPETTQSILALLRDInRELGLTIVLITHEMEVVKRICDRV 211
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
6-228 |
1.65e-34 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 124.53 E-value: 1.65e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 6 LLTARGLVKRYG----RVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAReA 81
Cdd:COG1124 1 MLEVRNLSVSYGqggrRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKAFR-R 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 82 GIETVYQN--LALSPALSIADnmflgreirkpgVLGSMFRMLDRPAMEKLARNKLSELGLmTIQNINQAVETLSGGQRQG 159
Cdd:COG1124 80 RVQMVFQDpyASLHPRHTVDR------------ILAEPLRIHGLPDREERIAELLEQVGL-PPSFLDRYPHQLSGGQRQR 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 160 VAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRA-RGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:COG1124 147 VAIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREeRGLTYLFVSHDLAVVAHLCDRVAVMQNGR 216
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
6-221 |
2.63e-34 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 123.57 E-value: 2.63e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 6 LLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQV--------QFRspme 77
Cdd:COG1126 1 MIEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLtdskkdinKLR---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 78 aREAGIetVYQNLALSPALSIADNMFLG-REIRKpgvlgsmfrmLDRPAMEKLARNKLSELGLmtIQNINQAVETLSGGQ 156
Cdd:COG1126 77 -RKVGM--VFQQFNLFPHLTVLENVTLApIKVKK----------MSKAEAEERAMELLERVGL--ADKADAYPAQLSGGQ 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517055771 157 RQGVAVARAAAFGSKVIIMDEPTAALG---VKEsrrVLELILDVRARGLPIVLISHNMPHVFEVADRI 221
Cdd:COG1126 142 QQRVAIARALAMEPKVMLFDEPTSALDpelVGE---VLDVMRDLAKEGMTMVVVTHEMGFAREVADRV 206
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
10-237 |
8.35e-34 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 121.96 E-value: 8.35e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 10 RGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfrsPMEAREAGIETVYQN 89
Cdd:cd03300 4 ENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDIT---NLPPHKRPVNTVFQN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 90 LALSPALSIADNMFLGREIRKPG---VLGSMFRMLDRPAMEKLARNKLSElglmtiqninqavetLSGGQRQGVAVARAA 166
Cdd:cd03300 81 YALFPHLTVFENIAFGLRLKKLPkaeIKERVAEALDLVQLEGYANRKPSQ---------------LSGGQQQRVAIARAL 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517055771 167 AFGSKVIIMDEPTAALGVKeSRRVLELILDV--RARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKE 237
Cdd:cd03300 146 VNEPKVLLLDEPLGALDLK-LRKDMQLELKRlqKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEE 217
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
8-221 |
1.10e-33 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 120.23 E-value: 1.10e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 8 TARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPME-AREAGIetV 86
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKElARKIAY--V 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YQNLALspaLSIADnmflgreirkpgvlgsmfrMLDRPameklarnklselglmtiqninqaVETLSGGQRQGVAVARAA 166
Cdd:cd03214 79 PQALEL---LGLAH-------------------LADRP------------------------FNELSGGERQRVLLARAL 112
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 167 AFGSKVIIMDEPTAALGVKESRRVLELILD-VRARGLPIVLISHNMPHVFEVADRI 221
Cdd:cd03214 113 AQEPPILLLDEPTSHLDIAHQIELLELLRRlARERGKTVVMVLHDLNLAARYADRV 168
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
19-221 |
1.17e-33 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 122.50 E-value: 1.17e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 19 VTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfRSPMEAREAGIETVYQNLAL--SPAL 96
Cdd:COG1101 19 KRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVT-KLPEYKRAKYIGRVFQDPMMgtAPSM 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 97 SIADNMFLGReiRKPGVLGsmFRMLDRPAMEKLARNKLSELGLMTIQNINQAVETLSGGQRQGVAVARAAAFGSKVIIMD 176
Cdd:COG1101 98 TIEENLALAY--RRGKRRG--LRRGLTKKRRELFRELLATLGLGLENRLDTKVGLLSGGQRQALSLLMATLTKPKLLLLD 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 517055771 177 EPTAALGVKESRRVLEL---IldVRARGLPIVLISHNMPHVFEVADRI 221
Cdd:COG1101 174 EHTAALDPKTAALVLELtekI--VEENNLTTLMVTHNMEQALDYGNRL 219
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
6-221 |
2.11e-33 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 123.24 E-value: 2.11e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 6 LLTARGLVKRY----GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTP---DEGVITLEGRQVQFRSP--- 75
Cdd:COG0444 1 LLEVRNLKVYFptrrGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKLSEkel 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 76 MEAREAGIETVYQN--LALSPALSIadnmflGREIRKPGVLgsmFRMLDRPAMEKLARNKLSELGlmtiqnINQAVET-- 151
Cdd:COG0444 81 RKIRGREIQMIFQDpmTSLNPVMTV------GDQIAEPLRI---HGGLSKAEARERAIELLERVG------LPDPERRld 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 152 -----LSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRA-RGLPIVLISHNMPHVFEVADRI 221
Cdd:COG0444 146 rypheLSGGMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQReLGLAILFITHDLGVVAEIADRV 221
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
7-228 |
2.45e-33 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 120.69 E-value: 2.45e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYG--RVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVqfRSPMEAREAGIE 84
Cdd:cd03263 1 LQIRNLTKTYKkgTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSI--RTDRKAARQSLG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 85 TVYQNLALSPALSIADNMflgreirkpgVLGSMFRMLDRPAMEKLARNKLSELGLmtIQNINQAVETLSGGQRQGVAVAR 164
Cdd:cd03263 79 YCPQFDALFDELTVREHL----------RFYARLKGLPKSEIKEEVELLLRVLGL--TDKANKRARTLSGGMKRKLSLAI 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517055771 165 AAAFGSKVIIMDEPTAALGVKESRRVLELILDVRaRGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:cd03263 147 ALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR-KGRSIILTTHSMDEAEALCDRIAIMSDGK 209
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
7-221 |
2.63e-33 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 120.75 E-value: 2.63e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISG-----AVTPDEGVITLEGRQV--QFRSPMEAR 79
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRlndliPGAPDEGEVLLDGKDIydLDVDVLELR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 80 eAGIETVYQNLALSPAlSIADNMFLGREIRkpgvlgsmfRMLDRPAMEKLARNKLSELGLMTIQNINQAVETLSGGQRQG 159
Cdd:cd03260 81 -RRVGMVFQKPNPFPG-SIYDNVAYGLRLH---------GIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQR 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517055771 160 VAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARgLPIVLISHNMPHVFEVADRI 221
Cdd:cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRT 210
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
8-228 |
3.91e-33 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 118.12 E-value: 3.91e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 8 TARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREaGIETVY 87
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRR-RIGYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 88 QnlalspalsiadnmflgreirkpgvlgsmfrmldrpameklarnklselglmtiqninqavetLSGGQRQGVAVARAAA 167
Cdd:cd00267 80 Q---------------------------------------------------------------LSGGQRQRVALARALL 96
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517055771 168 FGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
7-228 |
4.00e-33 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 119.69 E-value: 4.00e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFrspmEAREAgIETV 86
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNR-IGYL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YQNLALSPALSIADNM-FLGReirkpgvlgsmFRMLDRPAMEKLARNKLSELGLMTIQniNQAVETLSGGQRQGVAVARA 165
Cdd:cd03269 76 PEERGLYPKMKVIDQLvYLAQ-----------LKGLKKEEARRRIDEWLERLELSEYA--NKRVEELSKGNQQKVQFIAA 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517055771 166 AAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGR 205
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
4-228 |
4.77e-32 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 115.99 E-value: 4.77e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRYgrvtALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGI 83
Cdd:cd03215 2 EPVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 etVY-----QNLALSPALSIADNMFLGReirkpgvlgsmfrmldrpameklarnklselglmtiqninqaveTLSGGQRQ 158
Cdd:cd03215 78 --AYvpedrKREGLVLDLSVAENIALSS--------------------------------------------LLSGGNQQ 111
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 159 GVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:cd03215 112 KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGR 181
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
22-237 |
5.74e-31 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 114.74 E-value: 5.74e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPmEAREAGIetVYQNLALSPALSIADN 101
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP-EKRDISY--VPQNYALFPHMTVYKN 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 102 MFLGREIRKpgvlgsmfrmLDRPAMEKLARNKLSELGLMTIqnINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAA 181
Cdd:cd03299 92 IAYGLKKRK----------VDKKEIERKVLEIAEMLGIDHL--LNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSA 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 182 LGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKE 237
Cdd:cd03299 160 LDVRTKEKLREELKKIRKEfGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEE 216
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
4-237 |
1.58e-30 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 114.32 E-value: 1.58e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGI 83
Cdd:PRK11300 3 QPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 ETVYQNLALSPALSIADNMFLGREIR-KPGVLGSM-----FRMLDRPAMEKlARNKLSELGLMTIQniNQAVETLSGGQR 157
Cdd:PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQlKTGLFSGLlktpaFRRAESEALDR-AATWLERVGLLEHA--NRQAGNLAYGQQ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 158 QGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPK 236
Cdd:PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEhNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239
|
.
gi 517055771 237 E 237
Cdd:PRK11300 240 E 240
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
1-228 |
2.01e-30 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 115.60 E-value: 2.01e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 1 MAREPLLTARGLVKRY-----------GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQ 69
Cdd:COG4608 2 AMAEPLLEVRDLKKHFpvrgglfgrtvGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 70 VQFRSPMEARE--AGIETVYQN--LALSPALSIADnmFLGREIRkpgvlgsMFRMLDRPAMEKLARNKLSELGLMTiQNI 145
Cdd:COG4608 82 ITGLSGRELRPlrRRMQMVFQDpyASLNPRMTVGD--IIAEPLR-------IHGLASKAERRERVAELLELVGLRP-EHA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 146 NQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRIHIH 224
Cdd:COG4608 152 DRYPHEFSGGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDElGLTYLFISHDLSVVRHISDRVAVM 231
|
....
gi 517055771 225 RLGR 228
Cdd:COG4608 232 YLGK 235
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
6-228 |
2.99e-30 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 112.46 E-value: 2.99e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 6 LLTARGLVKRY----GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfRSPMEAReA 81
Cdd:cd03266 1 MITADALTKRFrdvkKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVV-KEPAEAR-R 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 82 GIETVYQNLALSPALSIADNM-FLGReirkpgvLGSMFRMLDRPAMEKLArnklselGLMTIQN-INQAVETLSGGQRQG 159
Cdd:cd03266 79 RLGFVSDSTGLYDRLTARENLeYFAG-------LYGLKGDELTARLEELA-------DRLGMEElLDRRVGGFSTGMRQK 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517055771 160 VAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:cd03266 145 VAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGR 213
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
7-221 |
5.95e-30 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 113.67 E-value: 5.95e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRS-------PmEAR 79
Cdd:COG4152 2 LELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPEDrrrigylP-EER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 80 eagietvyqnlALSPALSIADN-MFLGReirkpgvlgsmFRMLDRPAMEKLARNKLSELGLMtiQNINQAVETLSGGQRQ 158
Cdd:COG4152 81 -----------GLYPKMKVGEQlVYLAR-----------LKGLSKAEAKRRADEWLERLGLG--DRANKKVEELSKGNQQ 136
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517055771 159 GVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRI 221
Cdd:COG4152 137 KVQLIAALLHDPELLILDEPFSGLDPVNVELLKDVIRELAAKGTTVIFSSHQMELVEELCDRI 199
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
5-209 |
1.11e-29 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 112.26 E-value: 1.11e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 5 PLLTARGLVKRYG----RVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPmearE 80
Cdd:COG4525 2 SMLTVRHVSVRYPgggqPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGPGA----D 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 81 AGIetVYQNLALSPALSIADNMFLGREIRKpgvlgsmfrmLDRPAMEKLARNKLSELGLMTIQNinQAVETLSGGQRQGV 160
Cdd:COG4525 78 RGV--VFQKDALLPWLNVLDNVAFGLRLRG----------VPKAERRARAEELLALVGLADFAR--RRIWQLSGGMRQRV 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 517055771 161 AVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISH 209
Cdd:COG4525 144 GIARALAADPRFLLMDEPFGALDALTREQMQELLLDVWQRtGKGVFLITH 193
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1-228 |
1.22e-29 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 114.27 E-value: 1.22e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 1 MAREPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfRSPMEARE 80
Cdd:PRK09452 9 SSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT-HVPAENRH 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 81 agIETVYQNLALSPALSIADNMFLGreirkpgvlgsmFRMLDRPA-------MEKLARNKLSELGlmtiqniNQAVETLS 153
Cdd:PRK09452 88 --VNTVFQSYALFPHMTVFENVAFG------------LRMQKTPAaeitprvMEALRMVQLEEFA-------QRKPHQLS 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 154 GGQRQGVAVARAAAFGSKVIIMDEPTAALGVKeSRRVLELILDVRARGLPI--VLISHNMPHVFEVADRIHIHRLGR 228
Cdd:PRK09452 147 GGQQQRVAIARAVVNKPKVLLLDESLSALDYK-LRKQMQNELKALQRKLGItfVFVTHDQEEALTMSDRIVVMRDGR 222
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
10-221 |
2.29e-29 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 112.86 E-value: 2.29e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 10 RGLVKRY----GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREA--GI 83
Cdd:COG1135 5 ENLSKTFptkgGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELRAArrKI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 ------------ETVYQNLALspALSIADnmfLGREIRKPGVLgsmfRMLDRPAMEKLARNKLSELglmtiqninqavet 151
Cdd:COG1135 85 gmifqhfnllssRTVAENVAL--PLEIAG---VPKAEIRKRVA----ELLELVGLSDKADAYPSQL-------------- 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517055771 152 lSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRI 221
Cdd:COG1135 142 -SGGQKQRVGIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRElGLTIVLITHEMDVVRRICDRV 211
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
8-237 |
2.96e-29 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 111.20 E-value: 2.96e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 8 TARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEARE---AGIE 84
Cdd:cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRElrrKKIS 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 85 TVYQNLALSPALSIADNMFLGREIRkpGVlgsmfrmlDRPAMEKLARNKLSELGLMtiQNINQAVETLSGGQRQGVAVAR 164
Cdd:cd03294 106 MVFQSFALLPHRTVLENVAFGLEVQ--GV--------PRAEREERAAEALELVGLE--GWEHKYPDELSGGMQQRVGLAR 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517055771 165 AAAFGSKVIIMDEPTAALGVKESRRVLELILD-VRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKE 237
Cdd:cd03294 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRlQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEE 247
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
22-228 |
3.10e-29 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 115.10 E-value: 3.10e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGIetVY-------QNLALsp 94
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI--VYisedrkrDGLVL-- 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 95 ALSIADNMFLG--REIRKPGvlGSMfrmldRPAMEKLARNKLSELGLMTIQNINQAVETLSGGQRQGVAVARAAAFGSKV 172
Cdd:PRK10762 344 GMSVKENMSLTalRYFSRAG--GSL-----KHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKV 416
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 173 IIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:PRK10762 417 LILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
7-237 |
3.33e-29 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 109.94 E-value: 3.33e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfRSPMEAR-EAGIET 85
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDIT-KLPMHKRaRLGIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 86 VYQNLALSPALSIADNMFLGREIRKpgvlgsmfrmLDRPAMEKLARNKLSELGLMTIQniNQAVETLSGGQRQGVAVARA 165
Cdd:cd03218 80 LPQEASIFRKLTVEENILAVLEIRG----------LSKKEREEKLEELLEEFHITHLR--KSKASSLSGGERRRVEIARA 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517055771 166 AAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKE 237
Cdd:cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEE 219
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-221 |
4.38e-29 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 114.86 E-value: 4.38e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 2 AREPLLTARGLVKRY-GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRqvqfrspmEARE 80
Cdd:COG4988 332 AGPPSIELEDVSFSYpGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGV--------DLSD 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 81 AGIETVYQNLAL---SPAL---SIADNMFLGReirkPGVlgsmfrmlDRPAMEKLARN-KLSELglmtIQNINQAVET-- 151
Cdd:COG4988 404 LDPASWRRQIAWvpqNPYLfagTIRENLRLGR----PDA--------SDEELEAALEAaGLDEF----VAALPDGLDTpl 467
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 152 ------LSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVrARGLPIVLISHNmPHVFEVADRI 221
Cdd:COG4988 468 geggrgLSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRL-AKGRTVILITHR-LALLAQADRI 541
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
7-228 |
1.35e-28 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 108.38 E-value: 1.35e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGIETV 86
Cdd:TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YQNLALSPALSIADNMFLGREIRK------PGVLGSMF----RMLDRPAmeklarnklselGLmtiqninqavetLSGGQ 156
Cdd:TIGR03410 81 PQGREIFPRLTVEENLLTGLAALPrrsrkiPDEIYELFpvlkEMLGRRG------------GD------------LSGGQ 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517055771 157 RQGVAVARAAAFGSKVIIMDEPTAALG---VKESRRVLELIldVRARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:TIGR03410 137 QQQLAIARALVTRPKLLLLDEPTEGIQpsiIKDIGRVIRRL--RAEGGMAILLVEQYLDFARELADRYYVMERGR 209
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
7-228 |
2.17e-28 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 107.34 E-value: 2.17e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPmeaREAGIETV 86
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP---KDRDIAMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YQNLALSPALSIADNMFLGREIRKpgvlgsmfrmLDRPAMEKLARNKLSELGLMTIqnINQAVETLSGGQRQGVAVARAA 166
Cdd:cd03301 78 FQNYALYPHMTVYDNIAFGLKLRK----------VPKDEIDERVREVAELLQIEHL--LDRKPKQLSGGQRQRVALGRAI 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517055771 167 AFGSKVIIMDEPTAALGVK---ESRrvLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:cd03301 146 VREPKVFLMDEPLSNLDAKlrvQMR--AELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQ 208
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
7-228 |
3.25e-28 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 106.92 E-value: 3.25e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAReagIETV 86
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRR---IGAL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YQNLALSPALSIADNMflgreirkpGVLGSMFRMLDRPAMEKLARNKLSELGlmtiqniNQAVETLSGGQRQGVAVARAA 166
Cdd:cd03268 78 IEAPGFYPNLTARENL---------RLLARLLGIRKKRIDEVLDVVGLKDSA-------KKKVKGFSLGMKQRLGIALAL 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517055771 167 AFGSKVIIMDEPTAAL---GVKESRrvlELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:cd03268 142 LGNPDLLILDEPTNGLdpdGIKELR---ELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGK 203
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
6-221 |
4.69e-28 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 107.51 E-value: 4.69e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 6 LLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPME-AREAGIe 84
Cdd:COG4559 1 MLEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWElARRRAV- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 85 tVYQNLALSPALSIADNMFLGREirkPGvlGSMFRMLDRPAMEKLARNKLSELGlmtiqniNQAVETLSGGQRQGVAVAR 164
Cdd:COG4559 80 -LPQHSSLAFPFTVEEVVALGRA---PH--GSSAAQDRQIVREALALVGLAHLA-------GRSYQTLSGGEQQRVQLAR 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517055771 165 AAA-------FGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRI 221
Cdd:COG4559 147 VLAqlwepvdGGPRWLFLDEPTSALDLAHQHAVLRLARQLARRGGGVVAVLHDLNLAAQYADRI 210
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
7-246 |
7.88e-28 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 106.62 E-value: 7.88e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRY-GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAgIET 85
Cdd:cd03295 1 IEFENVTKRYgGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRK-IGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 86 VYQNLALSPALSIADNMFLgreirKPGVLGsmfrmLDRPAMEKLARNKLSELGLMTIQNINQAVETLSGGQRQGVAVARA 165
Cdd:cd03295 80 VIQQIGLFPHMTVEENIAL-----VPKLLK-----WPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARA 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 166 AAFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKEYTMSDAV 244
Cdd:cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLqQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPAN 229
|
..
gi 517055771 245 AF 246
Cdd:cd03295 230 DF 231
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-228 |
1.06e-27 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 106.93 E-value: 1.06e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 1 MAREPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEARE 80
Cdd:PRK11701 1 MMDQPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 81 AGIET--------VYQNLA--LSPALSIADN-----MFLG----REIRkpgvlgsmfrmldRPAMEKLARnklSELGLmt 141
Cdd:PRK11701 81 AERRRllrtewgfVHQHPRdgLRMQVSAGGNigerlMAVGarhyGDIR-------------ATAGDWLER---VEIDA-- 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 142 iQNINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILD-VRARGLPIVLISHNMPHVFEVADR 220
Cdd:PRK11701 143 -ARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGlVRELGLAVVIVTHDLAVARLLAHR 221
|
....*...
gi 517055771 221 IHIHRLGR 228
Cdd:PRK11701 222 LLVMKQGR 229
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
24-228 |
1.91e-27 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 105.07 E-value: 1.91e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 24 NADFDLyPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGR-----QVQFRSPMEAREAGIetVYQNLALSPALSI 98
Cdd:cd03297 16 KIDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTvlfdsRKKINLPPQQRKIGL--VFQQYALFPHLNV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 99 ADNMFLGREIRKPGVlgsmfrmlDRPAMEKLarnklseLGLMTIQNI-NQAVETLSGGQRQGVAVARAAAFGSKVIIMDE 177
Cdd:cd03297 93 RENLAFGLKRKRNRE--------DRISVDEL-------LDLLGLDHLlNRYPAQLSGGEKQRVALARALAAQPELLLLDE 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 517055771 178 PTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:cd03297 158 PFSALDRALRLQLLPELKQIKKNlNIPVIFVTHDLSEAEYLADRIVVMEDGR 209
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
21-237 |
3.01e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 105.84 E-value: 3.01e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEARE-AGIetVYQNlalspalsiA 99
Cdd:PRK13632 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKkIGI--IFQN---------P 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 100 DNMFLGREIRKPGVLGSMFRMLDRPAMEKLARNKLSELGLMTIqnINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPT 179
Cdd:PRK13632 93 DNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDY--LDKEPQNLSGGQKQRVAIASVLALNPEIIIFDEST 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 517055771 180 AALGVKESRRVLELILDVRARGLPIVL-ISHNMPHVFeVADRIHIHRLGRRLTVIDPKE 237
Cdd:PRK13632 171 SMLDPKGKREIKKIMVDLRKTRKKTLIsITHDMDEAI-LADKVIVFSEGKLIAQGKPKE 228
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
10-221 |
3.23e-27 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 105.17 E-value: 3.23e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 10 RGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEA---REAGIetV 86
Cdd:PRK09493 5 KNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERlirQEAGM--V 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YQNLALSPALSIADN-MFLGREIRKPGvlgsmfrmldRPAMEKLARNKLSELGLMtiQNINQAVETLSGGQRQGVAVARA 165
Cdd:PRK09493 83 FQQFYLFPHLTALENvMFGPLRVRGAS----------KEEAEKQARELLAKVGLA--ERAHHYPSELSGGQQQRVAIARA 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 166 AAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRI 221
Cdd:PRK09493 151 LAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRL 206
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
6-211 |
3.87e-27 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 105.17 E-value: 3.87e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 6 LLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPmearEAGIet 85
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGA----ERGV-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 86 VYQNLALSPALSIADNMFLGREIRkpGVlgsmfrmlDRPAMEKLARNKLSELGLMTIQniNQAVETLSGGQRQGVAVARA 165
Cdd:PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLA--GV--------EKMQRLEIAHQMLKKVGLEGAE--KRYIWQLSGGQRQRVGIARA 142
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 517055771 166 AAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNM 211
Cdd:PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQEtGKQVLLITHDI 189
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
8-221 |
6.99e-27 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 103.11 E-value: 6.99e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 8 TARGLVKRYGRVT-ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRspMEAREAGIetV 86
Cdd:cd03226 1 RIENISFSYKKGTeILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAK--ERRKSIGY--V 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YQNLAlspalsiaDNMF---LGREIRkpgvLGSMfrmlDRPAMEKLARNKLSELGLmtiqniNQAVE----TLSGGQRQG 159
Cdd:cd03226 77 MQDVD--------YQLFtdsVREELL----LGLK----ELDAGNEQAETVLKDLDL------YALKErhplSLSGGQKQR 134
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517055771 160 VAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRI 221
Cdd:cd03226 135 LAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRV 196
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-247 |
1.08e-26 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 105.93 E-value: 1.08e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 1 MAReplLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVqfrSPMEARE 80
Cdd:COG3839 1 MAS---LELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDV---TDLPPKD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 81 AGIETVYQNLALSPALSIADNMFLGREIRKpgvlgsmfrmLDRPAMEKLARNKLSELGlmtIQNI-NQAVETLSGGQRQG 159
Cdd:COG3839 75 RNIAMVFQSYALYPHMTVYENIAFPLKLRK----------VPKAEIDRRVREAAELLG---LEDLlDRKPKQLSGGQRQR 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 160 VAVARAAAFGSKVIIMDEPTAAlgvkesrrvleliLDVRARglpivlisHNMphvfevadRIHIHRLGRRL--TVI---- 233
Cdd:COG3839 142 VALGRALVREPKVFLLDEPLSN-------------LDAKLR--------VEM--------RAEIKRLHRRLgtTTIyvth 192
|
250
....*....|....*
gi 517055771 234 DPKE-YTMSDAVAFM 247
Cdd:COG3839 193 DQVEaMTLADRIAVM 207
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
5-237 |
1.40e-26 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 106.07 E-value: 1.40e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 5 PLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMearEAGIE 84
Cdd:PRK11607 18 PLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY---QRPIN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 85 TVYQNLALSPALSIADNMFLG---REIRKPGVLGSMFRMLDRPAMEKLARNKLSElglmtiqninqavetLSGGQRQGVA 161
Cdd:PRK11607 95 MMFQSYALFPHMTVEQNIAFGlkqDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQ---------------LSGGQRQRVA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 162 VARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKE 237
Cdd:PRK11607 160 LARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERvGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEE 236
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
21-221 |
1.89e-26 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 105.57 E-value: 1.89e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDnADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGR------QVQFRsPMEAREAGIetVYQNLALSP 94
Cdd:COG4148 15 TLD-VDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEvlqdsaRGIFL-PPHRRRIGY--VFQEARLFP 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 95 ALSIADNMFLGREIRKPGvlgsmfrmLDRPAMEKLARNklseLGLMTIqnINQAVETLSGGQRQGVAVARAAAFGSKVII 174
Cdd:COG4148 91 HLSVRGNLLYGRKRAPRA--------ERRISFDEVVEL----LGIGHL--LDRRPATLSGGERQRVAIGRALLSSPRLLL 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 517055771 175 MDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRI 221
Cdd:COG4148 157 MDEPLAALDLARKAEILPYLERLRDElDIPILYVSHSLDEVARLADHV 204
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
14-211 |
5.54e-26 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 101.28 E-value: 5.54e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 14 KRYGR-VTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQV---------QFRspmeaREAGI 83
Cdd:COG2884 9 KRYPGgREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLsrlkrreipYLR-----RRIGV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 etVYQNLALSPALSIADNMFLGREIRKpgvlgsmfrmLDRPAMEKLARNKLSELGLMTIqnINQAVETLSGGQRQGVAVA 163
Cdd:COG2884 84 --VFQDFRLLPDRTVYENVALPLRVTG----------KSRKEIRRRVREVLDLVGLSDK--AKALPHELSGGEQQRVAIA 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 517055771 164 RAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNM 211
Cdd:COG2884 150 RALVNRPELLLADEPTGNLDPETSWEIMELLEEINRRGTTVLIATHDL 197
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
5-258 |
2.33e-25 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 103.00 E-value: 2.33e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 5 PLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSpmeAREAG-- 82
Cdd:PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS---ARAASrr 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 83 IETVYQNLALSPALSIADNMFLGREIRKpGVLGSMFRMLDRPAMEKLARNKlselglmTIQNINQAVETLSGGQRQGVAV 162
Cdd:PRK09536 79 VASVPQDTSLSFEFDVRQVVEMGRTPHR-SRFDTWTETDRAAVERAMERTG-------VAQFADRPVTSLSGGERQRVLL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 163 ARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKEYTMSD 242
Cdd:PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTAD 230
|
250
....*....|....*..
gi 517055771 243 AVAFMTGAK-AVPTEPV 258
Cdd:PRK09536 231 TLRAAFDARtAVGTDPA 247
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
9-237 |
4.00e-25 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 98.98 E-value: 4.00e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 9 ARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVqFRSPMEAREAgIETVYQ 88
Cdd:cd03265 3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDV-VREPREVRRR-IGIVFQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 89 NLALSPALSIADNMFLgrEIRKPGVLGSMFRmldrpameKLARNKLSELGLMTIQniNQAVETLSGGQRQGVAVARAAAF 168
Cdd:cd03265 81 DLSVDDELTGWENLYI--HARLYGVPGAERR--------ERIDELLDFVGLLEAA--DRLVKTYSGGMRRRLEIARSLVH 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 169 GSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKE 237
Cdd:cd03265 149 RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEfGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
2-221 |
4.53e-25 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 103.52 E-value: 4.53e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 2 AREPLLTARGLVKRY-GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEARE 80
Cdd:TIGR02857 317 APASSLEFSGVSVAYpGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 81 aGIETVYQNLALSPAlSIADNMFLGReirkPGVLGSmfrMLDRPAMEKLARNKLSELGLMTIQNINQAVETLSGGQRQGV 160
Cdd:TIGR02857 397 -QIAWVPQHPFLFAG-TIAENIRLAR----PDASDA---EIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRL 467
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517055771 161 AVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVrARGLPIVLISHNmPHVFEVADRI 221
Cdd:TIGR02857 468 ALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRAL-AQGRTVLLVTHR-LALAALADRI 526
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
5-209 |
6.23e-25 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 99.46 E-value: 6.23e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 5 PLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPME-AREAGI 83
Cdd:PRK13548 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAElARRRAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 etvyqnLALSPALSIAdnmFLGREI----RKPGVLGSmfRMLDRPAMEKLARNKLSELGlmtiqniNQAVETLSGGQRQG 159
Cdd:PRK13548 81 ------LPQHSSLSFP---FTVEEVvamgRAPHGLSR--AEDDALVAAALAQVDLAHLA-------GRDYPQLSGGEQQR 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 160 VAVARA------AAFGSKVIIMDEPTAALGVKESRRVLELILD-VRARGLPIVLISH 209
Cdd:PRK13548 143 VQLARVlaqlwePDGPPRWLLLDEPTSALDLAHQHHVLRLARQlAHERGLAVIVVLH 199
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
4-228 |
6.65e-25 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 100.81 E-value: 6.65e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRY----------GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFR 73
Cdd:PRK11308 3 QPLLQAIDLKKHYpvkrglfkpeRLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 74 SPMEAREA--GIETVYQN--LALSPALSIAD--------NMFLGREIRKPGVLGSMFRMLDRPamEKLARNKlselglmt 141
Cdd:PRK11308 83 DPEAQKLLrqKIQIVFQNpyGSLNPRKKVGQileeplliNTSLSAAERREKALAMMAKVGLRP--EHYDRYP-------- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 142 iqninqavETLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADR 220
Cdd:PRK11308 153 --------HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQElGLSYVFISHDLSVVEHIADE 224
|
....*...
gi 517055771 221 IHIHRLGR 228
Cdd:PRK11308 225 VMVMYLGR 232
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
37-237 |
7.15e-25 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 100.65 E-value: 7.15e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 37 VIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPmEAReaGIETVYQNLALSPALSIADNMF-------LGREIR 109
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP-HLR--HINMVFQSYALFPHMTVEENVAfglkmrkVPRAEI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 110 KPGVLgSMFRMLDrpaMEKLARNKLSELglmtiqninqavetlSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRR 189
Cdd:TIGR01187 78 KPRVL-EALRLVQ---LEEFADRKPHQL---------------SGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQ 138
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 517055771 190 V-LELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKE 237
Cdd:TIGR01187 139 MqLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEE 187
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
4-237 |
8.26e-25 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 99.70 E-value: 8.26e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRYGRVT--ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREA 81
Cdd:PRK13635 3 EEIIRVEHISFRYPDAAtyALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 82 gIETVYQNlalspalsiADNMFLGREIRKPGVLGSMFRMLDRPAMEKLARNKLSELGlMTiQNINQAVETLSGGQRQGVA 161
Cdd:PRK13635 83 -VGMVFQN---------PDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVG-ME-DFLNREPHRLSGGQKQRVA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 162 VARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVL-ISHNMPHVFEvADRIHIHRLGRRLTVIDPKE 237
Cdd:PRK13635 151 IAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLsITHDLDEAAQ-ADRVIVMNKGEILEEGTPEE 226
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
21-228 |
8.87e-25 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 100.55 E-value: 8.87e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREA--GIETVYQNlalsPALSI 98
Cdd:PRK15079 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVrsDIQMIFQD----PLASL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 99 ADNMFLGREIRKPgvLGSMFRMLDRPAMEKLARNKLSELGLMTiQNINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEP 178
Cdd:PRK15079 112 NPRMTIGEIIAEP--LRTYHPKLSRQEVKDRVKAMMLKVGLLP-NLINRYPHEFSGGQCQRIGIARALILEPKLIICDEP 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 517055771 179 TAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:PRK15079 189 VSALDVSIQAQVVNLLQQLqREMGLSLIFIAHDLAVVKHISDRVLVMYLGH 239
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
4-228 |
1.24e-24 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 102.07 E-value: 1.24e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRY-----------GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVtPDEGVITLEGRQVQF 72
Cdd:COG4172 273 PPLLEARDLKVWFpikrglfrrtvGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLI-PSEGEIRFDGQDLDG 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 73 RSP--MEAREAGIETVYQN--LALSPALSIADNMFLGREIRKPGvlgsmfrmLDRPAMEKLARNKLSELGLmtiqninqA 148
Cdd:COG4172 352 LSRraLRPLRRRMQVVFQDpfGSLSPRMTVGQIIAEGLRVHGPG--------LSAAERRARVAEALEEVGL--------D 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 149 VETL-------SGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADR 220
Cdd:COG4172 416 PAARhryphefSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLqREHGLAYLFISHDLAVVRALAHR 495
|
....*...
gi 517055771 221 IHIHRLGR 228
Cdd:COG4172 496 VMVMKDGK 503
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
14-221 |
1.29e-24 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 98.23 E-value: 1.29e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 14 KRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRqvqfRSPMeareagIETvyqNLALS 93
Cdd:COG1134 34 TRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNGR----VSAL------LEL---GAGFH 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 94 PALSIADNMFL-GReirkpgVLGsmfrmLDRPAMEKLARN--KLSELGlmtiQNINQAVETLSGGQRQGVAVARAAAFGS 170
Cdd:COG1134 101 PELTGRENIYLnGR------LLG-----LSRKEIDEKFDEivEFAELG----DFIDQPVKTYSSGMRARLAFAVATAVDP 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 517055771 171 KVIIMDEptaALGV---KESRRVLELILDVRARGLPIVLISHNMPHVFEVADRI 221
Cdd:COG1134 166 DILLVDE---VLAVgdaAFQKKCLARIRELRESGRTVIFVSHSMGAVRRLCDRA 216
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
25-228 |
1.33e-24 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 101.91 E-value: 1.33e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 25 ADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGIetvyqnlALSP---------- 94
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI-------MLCPedrkaegiip 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 95 ALSIADNMFLG--REIRKPGVLgsmfrmLDRPAMEKLARNKLSELGLMTiQNINQAVETLSGGQRQGVAVARAAAFGSKV 172
Cdd:PRK11288 345 VHSVADNINISarRHHLRAGCL------INNRWEAENADRFIRSLNIKT-PSREQLIMNLSGGNQQKAILGRWLSEDMKV 417
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 173 IIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:PRK11288 418 ILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGR 473
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-228 |
1.71e-24 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 101.78 E-value: 1.71e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 1 MAREPLLTARGLVKR-YGRVtalDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAR 79
Cdd:PRK09700 260 LAHETVFEVRNVTSRdRKKV---RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAV 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 80 EAGIETVYQNL---ALSPALSIADNMFLGREIRKPGVLGSMfrMLDRPAMEKLARNKLSELGLMTIQNINQAVETLSGGQ 156
Cdd:PRK09700 337 KKGMAYITESRrdnGFFPNFSIAQNMAISRSLKDGGYKGAM--GLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGN 414
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517055771 157 RQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:PRK09700 415 QQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGR 486
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
21-211 |
2.07e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 98.72 E-value: 2.07e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDE---GVITLEGRQVQFRSPMEARE-AGIetVYQNlalspal 96
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDnpnSKITVDGITLTAKTVWDIREkVGI--VFQN------- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 97 siADNMFLGREIRKPGVLGSMFRMLDRPAMEKLARNKLSELGLMTIQNINQAveTLSGGQRQGVAVARAAAFGSKVIIMD 176
Cdd:PRK13640 93 --PDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPA--NLSGGQKQRVAIAGILAVEPKIIILD 168
|
170 180 190
....*....|....*....|....*....|....*.
gi 517055771 177 EPTAALGVKESRRVLELILDVRA-RGLPIVLISHNM 211
Cdd:PRK13640 169 ESTSMLDPAGKEQILKLIRKLKKkNNLTVISITHDI 204
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
7-221 |
2.11e-24 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 95.53 E-value: 2.11e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYG--RVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVqfrspmeaREAGIE 84
Cdd:cd03228 1 IEFKNVSFSYPgrPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDL--------RDLDLE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 85 TVYQNLAL---SPAL---SIADNMflgreirkpgvlgsmfrmldrpameklarnklselglmtiqninqavetLSGGQRQ 158
Cdd:cd03228 73 SLRKNIAYvpqDPFLfsgTIRENI-------------------------------------------------LSGGQRQ 103
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517055771 159 GVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDvRARGLPIVLISHNMPHVfEVADRI 221
Cdd:cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRA-LAKGKTVIVIAHRLSTI-RDADRI 164
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
12-227 |
3.13e-24 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 97.78 E-value: 3.13e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 12 LVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPD---EGVITLEGRQVQF--RSPMEAREAGIET- 85
Cdd:PRK09984 10 LAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDksaGSHIELLGRTVQRegRLARDIRKSRANTg 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 86 -VYQNLALSPALSIADNMFLGreirkpgVLGS--MFRMLDR---PAMEKLARNKLSELGLMTIQNinQAVETLSGGQRQG 159
Cdd:PRK09984 90 yIFQQFNLVNRLSVLENVLIG-------ALGStpFWRTCFSwftREQKQRALQALTRVGMVHFAH--QRVSTLSGGQQQR 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517055771 160 VAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRIHIHRLG 227
Cdd:PRK09984 161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDInQNDGITVVVTLHQVDYALRYCERIVALRQG 229
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
7-228 |
4.12e-24 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 94.98 E-value: 4.12e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTA--LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAgIE 84
Cdd:cd03246 1 LEVENVSFRYPGAEPpvLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDH-VG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 85 TVYQNLALSPAlSIADNMflgreirkpgvlgsmfrmldrpameklarnklselglmtiqninqavetLSGGQRQGVAVAR 164
Cdd:cd03246 80 YLPQDDELFSG-SIAENI-------------------------------------------------LSGGQRQRLGLAR 109
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517055771 165 AAaFGS-KVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNmPHVFEVADRIHIHRLGR 228
Cdd:cd03246 110 AL-YGNpRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHR-PETLASADRILVLEDGR 172
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
11-221 |
4.45e-24 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 96.62 E-value: 4.45e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 11 GLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREA-----GIET 85
Cdd:COG4161 7 NINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQFDFSQKPSEKAIrllrqKVGM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 86 VYQNLALSPALSIADNMflgreIRKP-GVLGSMFRMLDRPAMEKLARNKLSELGlmtiqniNQAVETLSGGQRQGVAVAR 164
Cdd:COG4161 87 VFQQYNLWPHLTVMENL-----IEAPcKVLGLSKEQAREKAMKLLARLRLTDKA-------DRFPLHLSGGQQQRVAIAR 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 165 AAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMphvfEVADRI 221
Cdd:COG4161 155 ALMMEPQVLLFDEPTAALDPEITAQVVEIIRELSQTGITQVIVTHEV----EFARKV 207
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
14-228 |
5.28e-24 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 98.65 E-value: 5.28e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 14 KRYGRvTALDnADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRS-----PMEAREAGIetVYQ 88
Cdd:TIGR02142 7 KRLGD-FSLD-ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRkgiflPPEKRRIGY--VFQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 89 NLALSPALSIADNMFLG-REIRKPGVLGSMFRMLDRPAMEKLARnklselglmtiqninQAVETLSGGQRQGVAVARAAA 167
Cdd:TIGR02142 83 EARLFPHLSVRGNLRYGmKRARPSERRISFERVIELLGIGHLLG---------------RLPGRLSGGEKQRVAIGRALL 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517055771 168 FGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEfGIPILYVSHSLQEVLRLADRVVVLEDGR 209
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
8-230 |
9.65e-24 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 95.86 E-value: 9.65e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 8 TARGLVKR-YGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGIeTV 86
Cdd:cd03267 22 SLKSLFKRkYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGV-VF 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YQNLALSPALSIADNMFLGREIrkpgvlgsmFRMLDRPAMEKLArnKLSElgLMTIQNI-NQAVETLSGGQRQGVAVARA 165
Cdd:cd03267 101 GQKTQLWWDLPVIDSFYLLAAI---------YDLPPARFKKRLD--ELSE--LLDLEELlDTPVRQLSLGQRMRAEIAAA 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 166 AAFGSKVIIMDEPTAALGVKESRRVLELILD-VRARGLPIVLISHNMPHVFEVADRIHIHRLGRRL 230
Cdd:cd03267 168 LLHEPEILFLDEPTIGLDVVAQENIRNFLKEyNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
1-247 |
1.42e-23 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 97.48 E-value: 1.42e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 1 MAREPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSpMEARE 80
Cdd:PRK11432 1 MTQKNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS-IQQRD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 81 agIETVYQNLALSPALSIADNMFLGreirkpgvlgsmFRMLDRPAMEKLARNKlSELGLMTIQNI-NQAVETLSGGQRQG 159
Cdd:PRK11432 80 --ICMVFQSYALFPHMSLGENVGYG------------LKMLGVPKEERKQRVK-EALELVDLAGFeDRYVDQISGGQQQR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 160 VAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKEY 238
Cdd:PRK11432 145 VALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQfNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
....*....
gi 517055771 239 TMSDAVAFM 247
Cdd:PRK11432 225 YRQPASRFM 233
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
4-228 |
2.89e-23 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 98.39 E-value: 2.89e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRY-------GRVT----ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQF 72
Cdd:PRK10261 311 EPILQVRNLVTRFplrsgllNRVTrevhAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 73 RSP--MEAREAGIETVYQNlalsPALSIADNMFLGREIRKPgvlGSMFRMLDRPAMEKLARNKLSELGLMTIQNINQAVE 150
Cdd:PRK10261 391 LSPgkLQALRRDIQFIFQD----PYASLDPRQTVGDSIMEP---LRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHE 463
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517055771 151 tLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:PRK10261 464 -FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLqRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
5-221 |
2.98e-23 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 98.30 E-value: 2.98e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 5 PLLTARGLVKRY--GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPmeareag 82
Cdd:COG4987 332 PSLELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDE------- 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 83 iETVYQNLALSP------ALSIADNMFLGR------EIRkpgvlgsmfRMLDRPAMEKLARNkLSElGLMTIqnINQAVE 150
Cdd:COG4987 405 -DDLRRRIAVVPqrphlfDTTLRENLRLARpdatdeELW---------AALERVGLGDWLAA-LPD-GLDTW--LGEGGR 470
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517055771 151 TLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVrARGLPIVLISHNmPHVFEVADRI 221
Cdd:COG4987 471 RLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEA-LAGRTVLLITHR-LAGLERMDRI 539
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
7-221 |
3.00e-23 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 94.44 E-value: 3.00e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTAldNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPmEAReaGIETV 86
Cdd:COG3840 2 LRLDDLTYRYGDFPL--RFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPP-AER--PVSML 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YQNLALSPALSIADNMFLGReirkpgvlgsmfrmldRPAMeklarnKLSELGLMTIQNINQAV----------ETLSGGQ 156
Cdd:COG3840 77 FQENNLFPHLTVAQNIGLGL----------------RPGL------KLTAEQRAQVEQALERVglaglldrlpGQLSGGQ 134
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 157 RQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRI 221
Cdd:COG3840 135 RQRVALARCLVRKRPILLLDEPFSALDPALRQEMLDLVDELcRERGLTVLMVTHDPEDAARIADRV 200
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
4-223 |
3.48e-23 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 94.33 E-value: 3.48e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfRSPMEAR---- 79
Cdd:COG1137 1 MMTLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDIT-HLPMHKRarlg 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 80 ------EAGI---ETVYQNLalspaLSIAdnmflgrEIRKpgvlgsmfrmLDRPAMEKLARNKLSELGLMTIQNiNQAVe 150
Cdd:COG1137 80 igylpqEASIfrkLTVEDNI-----LAVL-------ELRK----------LSKKEREERLEELLEEFGITHLRK-SKAY- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 151 TLSGGQRQGVAVARAAAFGSKVIIMDEPTAA---LGVKESRRvleLILDVRARGLPiVLIS-HNmphVFE---VADRIHI 223
Cdd:COG1137 136 SLSGGERRRVEIARALATNPKFILLDEPFAGvdpIAVADIQK---IIRHLKERGIG-VLITdHN---VREtlgICDRAYI 208
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
10-220 |
3.56e-23 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 96.41 E-value: 3.56e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 10 RGLVKRY----GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREA---- 81
Cdd:PRK11153 5 KNISKVFpqggRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKArrqi 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 82 GI----------ETVYQNLALspALSIAdnmflGR---EIRKpgvlgsmfRMLdrpamEKLARNKLSELGlmtiqniNQA 148
Cdd:PRK11153 85 GMifqhfnllssRTVFDNVAL--PLELA-----GTpkaEIKA--------RVT-----ELLELVGLSDKA-------DRY 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517055771 149 VETLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADR 220
Cdd:PRK11153 138 PAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRElGLTIVLITHEMDVVKRICDR 210
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
7-209 |
4.30e-23 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 93.32 E-value: 4.30e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPD---EGVITLEGRQVQfRSPMEAREAGI 83
Cdd:COG4136 2 LSLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAfsaSGEVLLNGRRLT-ALPAEQRRIGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 etVYQNLALSPALSIADNMFLGreirkpgvlgsMFRMLDRPAMEKLARNKLSELGLMTIQniNQAVETLSGGQRQGVAVA 163
Cdd:COG4136 81 --LFQDDLLFPHLSVGENLAFA-----------LPPTIGRAQRRARVEQALEEAGLAGFA--DRDPATLSGGQRARVALL 145
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 517055771 164 RAAAFGSKVIIMDEPTAALGVKESRRVLELILD-VRARGLPIVLISH 209
Cdd:COG4136 146 RALLAEPRALLLDEPFSKLDAALRAQFREFVFEqIRQRGIPALLVTH 192
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
7-220 |
4.80e-23 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 94.05 E-value: 4.80e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGIET- 85
Cdd:PRK11264 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQl 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 86 ------VYQNLALSPALSIADNMFLGREIRKPgvlgsmfrmLDRPAMEKLARNKLSELGLMTIQNinQAVETLSGGQRQG 159
Cdd:PRK11264 84 rqhvgfVFQNFNLFPHRTVLENIIEGPVIVKG---------EPKEEATARARELLAKVGLAGKET--SYPRRLSGGQQQR 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517055771 160 VAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADR 220
Cdd:PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADR 213
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
10-210 |
5.28e-23 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 93.24 E-value: 5.28e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 10 RGLVKRY-GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQV----QFRSPMEAREAGIe 84
Cdd:cd03292 4 INVTKTYpNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVsdlrGRAIPYLRRKIGV- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 85 tVYQNLALSPALSIADN-MFLGREIRKPGvlgsmfRMLDRPAMEKLARNKLSElglmtiqNINQAVETLSGGQRQGVAVA 163
Cdd:cd03292 83 -VFQDFRLLPDRNVYENvAFALEVTGVPP------REIRKRVPAALELVGLSH-------KHRALPAELSGGEQQRVAIA 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 517055771 164 RAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHN 210
Cdd:cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHA 195
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1-210 |
7.19e-23 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 93.24 E-value: 7.19e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 1 MAREPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEARE 80
Cdd:PRK10247 2 QENSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 81 agiETVYqnLALSPAL---SIADNMFLGREIRKpgvlgsmfrmlDRPAMEKLARNkLSELGL-MTIqnINQAVETLSGGQ 156
Cdd:PRK10247 82 ---QVSY--CAQTPTLfgdTVYDNLIFPWQIRN-----------QQPDPAIFLDD-LERFALpDTI--LTKNIAELSGGE 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 517055771 157 RQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILD-VRARGLPIVLISHN 210
Cdd:PRK10247 143 KQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRyVREQNIAVLWVTHD 197
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
24-225 |
9.58e-23 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 92.56 E-value: 9.58e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 24 NADFDLY--PGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFrspMEAREAGIETVYQNLALSPALSIADN 101
Cdd:cd03298 14 PMHFDLTfaQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTA---APPADRPVSMLFQENNLFAHLTVEQN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 102 MFLGReirKPGVlgsMFRMLDRPAMEKLARNklselglMTIQNINQAV-ETLSGGQRQGVAVARAAAFGSKVIIMDEPTA 180
Cdd:cd03298 91 VGLGL---SPGL---KLTAEDRQAIEVALAR-------VGLAGLEKRLpGELSGGERQRVALARVLVRDKPVLLLDEPFA 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 517055771 181 ALGVKESRRVLELILDVRA-RGLPIVLISHNMPHVFEVADR-IHIHR 225
Cdd:cd03298 158 ALDPALRAEMLDLVLDLHAeTKMTVLMVTHQPEDAKRLAQRvVFLDN 204
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
19-244 |
1.01e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 94.92 E-value: 1.01e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 19 VTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLE----------GRQVQFRSPMEAREAG-----I 83
Cdd:PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGdiyigdkknnHELITNPYSKKIKNFKelrrrV 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 ETVYQ--NLALSPALSIADNMFlgreirKPGVLGsmfrmLDRPAMEKLARNKLSELGLMTiQNINQAVETLSGGQRQGVA 161
Cdd:PRK13631 119 SMVFQfpEYQLFKDTIEKDIMF------GPVALG-----VKKSEAKKLAKFYLNKMGLDD-SYLERSPFGLSGGQKRRVA 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 162 VARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKEYTMS 241
Cdd:PRK13631 187 IAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTD 266
|
...
gi 517055771 242 DAV 244
Cdd:PRK13631 267 QHI 269
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
5-210 |
1.31e-22 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 91.86 E-value: 1.31e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 5 PLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAreagie 84
Cdd:PRK13539 1 MMLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEA------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 85 TVY---QNlALSPALSIADNMFLGREIRKPGvlgsmfrmlDRPAMEKLARnklseLGLMTIQNINQAVetLSGGQRQGVA 161
Cdd:PRK13539 75 CHYlghRN-AMKPALTVAENLEFWAAFLGGE---------ELDIAAALEA-----VGLAPLAHLPFGY--LSAGQKRRVA 137
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 517055771 162 VARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHN 210
Cdd:PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHI 186
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
5-227 |
1.83e-22 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 95.90 E-value: 1.83e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 5 PLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLeGRQV------QFRSPMEA 78
Cdd:COG0488 314 KVLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GETVkigyfdQHQEELDP 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 79 ReagiETVYQNLAlspalSIADNmflGREIRKPGVLGsmfRMLDRPAMeklarnklselglmtiqnINQAVETLSGGQRQ 158
Cdd:COG0488 393 D----KTVLDELR-----DGAPG---GTEQEVRGYLG---RFLFSGDD------------------AFKPVGVLSGGEKA 439
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517055771 159 GVAVARAAAFGSKVIIMDEPTAALGVkESRRVLELILDvrarGLP--IVLISHNM-------PHVFEVADRIHIHRLG 227
Cdd:COG0488 440 RLALAKLLLSPPNVLLLDEPTNHLDI-ETLEALEEALD----DFPgtVLLVSHDRyfldrvaTRILEFEDGGVREYPG 512
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
15-221 |
1.85e-22 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 96.06 E-value: 1.85e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 15 RYGR--VTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGrqvqfrspMEAREAGIETVYQNLAL 92
Cdd:COG2274 482 RYPGdsPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDG--------IDLRQIDPASLRRQIGV 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 93 SP------ALSIADNMFLGREirkpgvlgsmfrMLDRPAMEKLAR--------NKLsELGLMTIqnINQAVETLSGGQRQ 158
Cdd:COG2274 554 VLqdvflfSGTIRENITLGDP------------DATDEEIIEAARlaglhdfiEAL-PMGYDTV--VGEGGSNLSGGQRQ 618
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517055771 159 GVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDvRARGLPIVLISHNMPHVfEVADRI 221
Cdd:COG2274 619 RLAIARALLRNPRILILDEATSALDAETEAIILENLRR-LLKGRTVIIIAHRLSTI-RLADRI 679
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
4-237 |
2.12e-22 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 95.64 E-value: 2.12e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRY-----GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITL----EGRQVQFRS 74
Cdd:TIGR03269 277 EPIIKVRNVSKRYisvdrGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVrvgdEWVDMTKPG 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 75 PMEAREAG--IETVYQNLALSPALSIADNMFLGREIRKPGVLGSMFRMLDRPAM---EKLARNKLselglmtiqniNQAV 149
Cdd:TIGR03269 357 PDGRGRAKryIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVgfdEEKAEEIL-----------DKYP 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 150 ETLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:TIGR03269 426 DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEmEQTFIIVSHDMDFVLDVCDRAALMRDGK 505
|
....*....
gi 517055771 229 RLTVIDPKE 237
Cdd:TIGR03269 506 IVKIGDPEE 514
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
22-221 |
2.23e-22 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 92.14 E-value: 2.23e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAreagieTVYQNLALSPALSIADN 101
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM------VVFQNYSLLPWLTVREN 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 102 MFLGreirkpgvLGSMFRMLDRPAMEKLARNKLSELGLMTIQNinQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAA 181
Cdd:TIGR01184 75 IALA--------VDRVLPDLSKSERRAIVEEHIALVGLTEAAD--KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 517055771 182 LGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRI 221
Cdd:TIGR01184 145 LDALTRGNLQEELMQIwEEHRVTVLMVTHDVDEALLLSDRV 185
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
16-259 |
2.75e-22 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 92.74 E-value: 2.75e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 16 YGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQ-FRSPMEAREAGIetVYQNLALSP 94
Cdd:PRK10253 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQhYASKEVARRIGL--LAQNATTPG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 95 ALSIADNMFLGREIRKPgvLGSMFRMLDRPAMEKLAR-NKLSELGlmtiqniNQAVETLSGGQRQGVAVARAAAFGSKVI 173
Cdd:PRK10253 95 DITVQELVARGRYPHQP--LFTRWRKEDEEAVTKAMQaTGITHLA-------DQSVDTLSGGQRQRAWIAMVLAQETAIM 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 174 IMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKEYTMSDAVAFMTGAKA 252
Cdd:PRK10253 166 LLDEPTTWLDISHQIDLLELLSELnREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIYGLRC 245
|
....*...
gi 517055771 253 -VPTEPVA 259
Cdd:PRK10253 246 mIIDDPVA 253
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
15-214 |
3.61e-22 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 90.37 E-value: 3.61e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 15 RYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITlegrqvqfrspmEAREAGIETVYQNLALSP 94
Cdd:NF040873 1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVR------------RAGGARVAYVPQRSEVPD 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 95 AL--SIADNMFLGReIRKPGVLGSMFRmLDRPAMEK-LARNKLSELGlmtiqniNQAVETLSGGQRQGVAVARAAAFGSK 171
Cdd:NF040873 69 SLplTVRDLVAMGR-WARRGLWRRLTR-DDRAAVDDaLERVGLADLA-------GRQLGELSGGQRQRALLAQGLAQEAD 139
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 517055771 172 VIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHV 214
Cdd:NF040873 140 LLLLDEPTTGLDAESRERIIALLAEEHARGATVVVVTHDLELV 182
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
10-223 |
4.89e-22 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 91.05 E-value: 4.89e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 10 RGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVqfrSPMEAreagietvyqN 89
Cdd:cd03220 26 LGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS---SLLGL----------G 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 90 LALSPALSIADNMFLgreirkpgvLGSMFRMLDRPAMEKLARNK-LSELGlmtiQNINQAVETLSGGQRQGVAVARAAAF 168
Cdd:cd03220 93 GGFNPELTGRENIYL---------NGRLLGLSRKEIDEKIDEIIeFSELG----DFIDLPVKTYSSGMKARLAFAIATAL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 517055771 169 GSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHI 223
Cdd:cd03220 160 EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALV 214
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
2-212 |
6.35e-22 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 90.96 E-value: 6.35e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 2 AREPLLTARGLVKRY----GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQV------- 70
Cdd:COG4181 4 SSAPIIELRGLTKTVgtgaGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLfaldeda 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 71 --QFRspmeAREAGIetVYQNLALSPALSIADNMFLGREIRKpgvlgsmfrmlDRPAMEKlARNKLSELGLMtiQNINQA 148
Cdd:COG4181 84 raRLR----ARHVGF--VFQSFQLLPTLTALENVMLPLELAG-----------RRDARAR-ARALLERVGLG--HRLDHY 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517055771 149 VETLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMP 212
Cdd:COG4181 144 PAQLSGGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELnRERGTTLVLVTHDPA 208
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
6-237 |
7.05e-22 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 91.61 E-value: 7.05e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 6 LLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQF--RSPMEAREAgI 83
Cdd:PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYskRGLLALRQQ-V 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 ETVYQNlalsPALSI------ADNMFlgrEIRKPGVlgsmfrmldrpAMEKLARNKLSELGLMTIQNI-NQAVETLSGGQ 156
Cdd:PRK13638 80 ATVFQD----PEQQIfytdidSDIAF---SLRNLGV-----------PEAEITRRVDEALTLVDAQHFrHQPIQCLSHGQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 157 RQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPK 236
Cdd:PRK13638 142 KKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPG 221
|
.
gi 517055771 237 E 237
Cdd:PRK13638 222 E 222
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
6-237 |
7.48e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 91.68 E-value: 7.48e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 6 LLTARGLVKRYGRVT-ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQF--RSPMEARE-A 81
Cdd:PRK13639 1 ILETRDLKYSYPDGTeALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYdkKSLLEVRKtV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 82 GIetVYQNlalspalsiADNMFLGREIRKPGVLGSMFRMLDRPAMEKLARNKLSELGLMTIQNinQAVETLSGGQRQGVA 161
Cdd:PRK13639 81 GI--VFQN---------PDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN--KPPHHLSGGQKKRVA 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 162 VARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKE 237
Cdd:PRK13639 148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKE 223
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
4-237 |
8.85e-22 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 91.79 E-value: 8.85e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGI 83
Cdd:PRK13537 5 VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 ETVYQNlaLSPALSIADNMFlgreirkpgVLGSMFRMLDRPAMEKLArnKLSELGLMTiQNINQAVETLSGGQRQGVAVA 163
Cdd:PRK13537 85 VPQFDN--LDPDFTVRENLL---------VFGRYFGLSAAAARALVP--PLLEFAKLE-NKADAKVGELSGGMKRRLTLA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517055771 164 RAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKE 237
Cdd:PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHA 224
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
20-221 |
1.34e-21 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 90.97 E-value: 1.34e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 20 TALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREA----GI-----------E 84
Cdd:TIGR04521 19 KALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITAKKKKKLKDLrkkvGLvfqfpehqlfeE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 85 TVY-------QNLALSPAlsiadnmflgrEIrkpgvlgsmfrmldrpamEKLARNKLSELGLmTIQNINQAVETLSGGQR 157
Cdd:TIGR04521 99 TVYkdiafgpKNLGLSEE-----------EA------------------EERVKEALELVGL-DEEYLERSPFELSGGQM 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517055771 158 QGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRI 221
Cdd:TIGR04521 149 RRVAIAGVLAMEPEVLILDEPTAGLDPKGRKEILDLFKRLhKEKGLTVILVTHSMEDVAEYADRV 213
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
9-225 |
3.88e-21 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 92.05 E-value: 3.88e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 9 ARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGrqvqfrspmeareaGIETVY- 87
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPK--------------GLRIGYl 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 88 -QNLALSPALSIADNMFLG----------------------REIRKPGVLGSMFRMLDRPAMEKLARNKLSELGLMTIQn 144
Cdd:COG0488 67 pQEPPLDDDLTVLDTVLDGdaelraleaeleeleaklaepdEDLERLAELQEEFEALGGWEAEARAEEILSGLGFPEED- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 145 INQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVkESRRVLELILdvRARGLPIVLISH-----NmphvfEVAD 219
Cdd:COG0488 146 LDRPVSELSGGWRRRVALARALLSEPDLLLLDEPTNHLDL-ESIEWLEEFL--KNYPGTVLVVSHdryflD-----RVAT 217
|
....*..
gi 517055771 220 RI-HIHR 225
Cdd:COG0488 218 RIlELDR 224
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
4-222 |
4.46e-21 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 88.26 E-value: 4.46e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRY-------GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVI------------T 64
Cdd:COG4778 2 TTLLEVENLSKTFtlhlqggKRLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSIlvrhdggwvdlaQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 65 LEGRQVqfrspMEAREAGIETVYQnlalspalsiadnmFLgREI-RKPG---VLGSMFRM-LDRPAMEKLARNKLSELgl 139
Cdd:COG4778 82 ASPREI-----LALRRRTIGYVSQ--------------FL-RVIpRVSAldvVAEPLLERgVDREEARARARELLARL-- 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 140 mtiqNINQAV-----ETLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHV 214
Cdd:COG4778 140 ----NLPERLwdlppATFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARGTAIIGIFHDEEVR 215
|
....*...
gi 517055771 215 FEVADRIH 222
Cdd:COG4778 216 EAVADRVV 223
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
4-220 |
5.99e-21 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 88.68 E-value: 5.99e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAIS--GAVTPD---EGVITLEGRQVQfrSP--- 75
Cdd:PRK14239 3 EPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINrmNDLNPEvtiTGSIVYNGHNIY--SPrtd 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 76 -MEAREAgIETVYQNLALSPaLSIADNMFLGreIRKPGVLgsmfrmlDRPAMEKLARNKLSELGLM--TIQNINQAVETL 152
Cdd:PRK14239 81 tVDLRKE-IGMVFQQPNPFP-MSIYENVVYG--LRLKGIK-------DKQVLDEAVEKSLKGASIWdeVKDRLHDSALGL 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517055771 153 SGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARgLPIVLISHNMPHVFEVADR 220
Cdd:PRK14239 150 SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDD-YTMLLVTRSMQQASRISDR 216
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
23-221 |
6.34e-21 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 91.53 E-value: 6.34e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 23 DNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVT-PDEGVITLEGRQVQFRSPMEAREAGIETVYQNL---ALSPALSI 98
Cdd:PRK13549 279 DDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPgRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRkrdGIVPVMGV 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 99 ADNMFLGreirkpgVLG--SMFRMLDRPAMEKLARNKLSELGLMTiQNINQAVETLSGGQRQGVAVARAAAFGSKVIIMD 176
Cdd:PRK13549 359 GKNITLA-------ALDrfTGGSRIDDAAELKTILESIQRLKVKT-ASPELAIARLSGGNQQKAVLAKCLLLNPKILILD 430
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 517055771 177 EPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRI 221
Cdd:PRK13549 431 EPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRV 475
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
14-221 |
7.11e-21 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 90.14 E-value: 7.11e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 14 KRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVqfrSPMEAREAGIETVYQNLALS 93
Cdd:PRK10851 10 KSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV---SRLHARDRKVGFVFQHYALF 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 94 PALSIADNMFLGreirkpgvlgsmFRML---DRPAMEKLaRNKLSELgLMTIQ---NINQAVETLSGGQRQGVAVARAAA 167
Cdd:PRK10851 87 RHMTVFDNIAFG------------LTVLprrERPNAAAI-KAKVTQL-LEMVQlahLADRYPAQLSGGQKQRVALARALA 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 517055771 168 FGSKVIIMDEPTAALGV---KESRRVL-ELILDVRARGlpiVLISHNMPHVFEVADRI 221
Cdd:PRK10851 153 VEPQILLLDEPFGALDAqvrKELRRWLrQLHEELKFTS---VFVTHDQEEAMEVADRV 207
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
7-223 |
1.04e-20 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 86.86 E-value: 1.04e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGeILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfRSPMEAREAgIETV 86
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVL-KQPQKLRRR-IGYL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YQNLALSPALSIADnmFLgreirkpGVLGSMFRMLDRPAmEKLARNKLSELGLmtIQNINQAVETLSGGQRQGVAVARAA 166
Cdd:cd03264 78 PQEFGVYPNFTVRE--FL-------DYIAWLKGIPSKEV-KARVDEVLELVNL--GDRAKKKIGSLSGGMRRRVGIAQAL 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 517055771 167 AFGSKVIIMDEPTAALGVKESRRVLELILDVRARglPIVLIS-HNMPHVFEVADRIHI 223
Cdd:cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGED--RIVILStHIVEDVESLCNQVAV 201
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
7-258 |
1.11e-20 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 88.05 E-value: 1.11e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVT--PD---EGVITLEGRQVqFRSPMEAREA 81
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIElyPEarvSGEVYLDGQDI-FKMDVIELRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 82 GIETVYQNLALSPALSIADNMFLGREIRKpgvLGSMFRMLDRPAMEKLARNKLSElglmTIQN-INQAVETLSGGQRQGV 160
Cdd:PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKLNR---LVKSKKELQERVRWALEKAQLWD----EVKDrLDAPAGKLSGGQQQRL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 161 AVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRaRGLPIVLISHNMPHvfevADRIhihrlgrrltvidpkeytm 240
Cdd:PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-KDMTIVLVTHFPQQ----AARI------------------- 211
|
250
....*....|....*...
gi 517055771 241 SDAVAFMTGAKAVPTEPV 258
Cdd:PRK14247 212 SDYVAFLYKGQIVEWGPT 229
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-228 |
1.13e-20 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 90.51 E-value: 1.13e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 1 MAREPLLTARGLVKRYG----RVTALDNADFDLYPGEILAVIGDNGAGKS----SLIKAISGAVTPDEGVITLEGRQVQF 72
Cdd:COG4172 1 MMSMPLLSVEDLSVAFGqgggTVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 73 RSPMEARE---AGIETVYQN--LALSPALSIadnmflGREIRKPGVLgsmFRMLDRPAMEKLARNKLSELGLmtiqninQ 147
Cdd:COG4172 81 LSERELRRirgNRIAMIFQEpmTSLNPLHTI------GKQIAEVLRL---HRGLSGAAARARALELLERVGI-------P 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 148 AVET--------LSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVA 218
Cdd:COG4172 145 DPERrldayphqLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRElGMALLLITHDLGVVRRFA 224
|
250
....*....|
gi 517055771 219 DRIHIHRLGR 228
Cdd:COG4172 225 DRVAVMRQGE 234
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
21-228 |
1.14e-20 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 87.26 E-value: 1.14e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREaGIETVYQNLALSPAlSIAD 100
Cdd:cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR-NIGYVPQDVTLFYG-TLRD 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 101 NMFLGREIRKPGvlgSMFRMLDRPAMEKLARNKLSELGLMtiqnINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTA 180
Cdd:cd03245 97 NITLGAPLADDE---RILRAAELAGVTDFVNKHPNGLDLQ----IGERGRGLSGGQRQAVALARALLNDPPILLLDEPTS 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 517055771 181 ALGVKESRRVLELiLDVRARGLPIVLISHNMPhVFEVADRIHIHRLGR 228
Cdd:cd03245 170 AMDMNSEERLKER-LRQLLGDKTLIIITHRPS-LLDLVDRIIVMDSGR 215
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
11-230 |
1.66e-20 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 89.12 E-value: 1.66e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 11 GLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVqfrsPMEAREA--GIETVYQ 88
Cdd:PRK13536 46 GVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPV----PARARLAraRIGVVPQ 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 89 NLALSPALSIADNMFlgreirkpgVLGSMFRMLDR------PAMEKLARNKlselglmtiQNINQAVETLSGGQRQGVAV 162
Cdd:PRK13536 122 FDNLDLEFTVRENLL---------VFGRYFGMSTReieaviPSLLEFARLE---------SKADARVSDLSGGMKRRLTL 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517055771 163 ARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRL 230
Cdd:PRK13536 184 ARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKI 251
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
4-210 |
3.12e-20 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 89.34 E-value: 3.12e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRY-GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAg 82
Cdd:TIGR02868 332 KPTLELRDLSAGYpGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRR- 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 83 IETVYQNLALSpALSIADNMFLGReirkPGVLGS-MFRMLDRPAMEKLARNKLSelGLMTIqnINQAVETLSGGQRQGVA 161
Cdd:TIGR02868 411 VSVCAQDAHLF-DTTVRENLRLAR----PDATDEeLWAALERVGLADWLRALPD--GLDTV--LGEGGARLSGGERQRLA 481
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 517055771 162 VARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVrARGLPIVLISHN 210
Cdd:TIGR02868 482 LARALLADAPILLLDEPTEHLDAETADELLEDLLAA-LSGRTVVLITHH 529
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
11-221 |
3.82e-20 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 86.22 E-value: 3.82e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 11 GLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEA-------REAGI 83
Cdd:PRK11124 7 GINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDkairelrRNVGM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 etVYQNLALSPALSIADNMflgreIRKP-GVLGsmfrmLDRP-----AMEKLARNKLSEL-GLMTIQninqavetLSGGQ 156
Cdd:PRK11124 87 --VFQQYNLWPHLTVQQNL-----IEAPcRVLG-----LSKDqalarAEKLLERLRLKPYaDRFPLH--------LSGGQ 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517055771 157 RQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMphvfEVADRI 221
Cdd:PRK11124 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV----EVARKT 207
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
5-219 |
5.22e-20 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 86.24 E-value: 5.22e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 5 PLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISgAVTPDEGVITLEGRQVQFRSPMEAREAGIE 84
Cdd:PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLN-RMNELESEVRVEGRVEFFNQNIYERRVNLN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 85 TVYQNLAL---SPAL---SIADNMFLGREIrkpgvLGSmfrmldRPAME--KLARNKLSELGLM-TIQN-INQAVETLSG 154
Cdd:PRK14258 85 RLRRQVSMvhpKPNLfpmSVYDNVAYGVKI-----VGW------RPKLEidDIVESALKDADLWdEIKHkIHKSALDLSG 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 155 GQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARG-LPIVLISHNMPHVFEVAD 219
Cdd:PRK14258 154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSeLTMVIVSHNLHQVSRLSD 219
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
21-242 |
5.64e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 86.58 E-value: 5.64e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGIETVYQNlalspalsiAD 100
Cdd:PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQN---------PE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 101 NMFLGREIRKPGVLGSMFRMLDRPAMEKLARNKLSELGLMTIQNinQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTA 180
Cdd:PRK13644 88 TQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH--RSPKTLSGGQGQCVALAGILTMEPECLIFDEVTS 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517055771 181 ALGVKESRRVLELILDVRARGLPIVLISHNMPHVfEVADRIHIHRLGRRLTVIDPkEYTMSD 242
Cdd:PRK13644 166 MLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL-HDADRIIVMDRGKIVLEGEP-ENVLSD 225
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
21-228 |
5.77e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 86.64 E-value: 5.77e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEG-----RQVQFRSPmeAREAGI-----------E 84
Cdd:PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGvditdKKVKLSDI--RKKVGLvfqypeyqlfeE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 85 TVYQNLALSPAlsiadNMFLGREIRKPGVLGSMfrmldrpAMEKLARNKLSElglmtiqninQAVETLSGGQRQGVAVAR 164
Cdd:PRK13637 100 TIEKDIAFGPI-----NLGLSEEEIENRVKRAM-------NIVGLDYEDYKD----------KSPFELSGGQKRRVAIAG 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517055771 165 AAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:PRK13637 158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEyNMTIILVSHSMEDVAKLADRIIVMNKGK 222
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
18-228 |
1.09e-19 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 87.96 E-value: 1.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 18 RVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPD-EGVITLEGRQVQFRSPMEAREAGIETVYQNL---ALS 93
Cdd:TIGR02633 272 HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKfEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRkrhGIV 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 94 PALSIADNMFLGreirkpgVLGSM-FRM-LDRPAMEKLARNKLSELGLMTIQNiNQAVETLSGGQRQGVAVARAAAFGSK 171
Cdd:TIGR02633 352 PILGVGKNITLS-------VLKSFcFKMrIDAAAELQIIGSAIQRLKVKTASP-FLPIGRLSGGNQQKAVLAKMLLTNPR 423
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 172 VIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:TIGR02633 424 VLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGK 480
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
7-209 |
1.15e-19 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 83.95 E-value: 1.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREagIETV 86
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHEN--ILYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YQNLALSPALSIADNMFLGREIrkpgvLGSMFRMLDrpameklarNKLSELGLMTIQNInqAVETLSGGQRQGVAVARAA 166
Cdd:TIGR01189 79 GHLPGLKPELSALENLHFWAAI-----HGGAQRTIE---------DALAAVGLTGFEDL--PAAQLSAGQQRRLALARLW 142
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 517055771 167 AFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISH 209
Cdd:TIGR01189 143 LSRRPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTH 185
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
22-237 |
1.22e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 85.65 E-value: 1.22e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfrspMEAREAGIETVYQNLALS---PALSI 98
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHIT----PETGNKNLKKLRKKVSLVfqfPEAQL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 99 ADNMFLgREIrkpgvlgsMFRMLDRPAMEKLARNK----LSELGLMTiQNINQAVETLSGGQRQGVAVARAAAFGSKVII 174
Cdd:PRK13641 99 FENTVL-KDV--------EFGPKNFGFSEDEAKEKalkwLKKVGLSE-DLISKSPFELSGGQMRRVAIAGVMAYEPEILC 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517055771 175 MDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKE 237
Cdd:PRK13641 169 LDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
7-221 |
1.71e-19 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 87.50 E-value: 1.71e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRY--GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVqFRSPMEAREAGIE 84
Cdd:COG4618 331 LSVENLTVVPpgSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADL-SQWDREELGRHIG 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 85 TVYQNLALSPAlSIADNMflgreirkpgvlgSMFRMLDRPAMEKLAR--------NKLSElGLMTIqnINQAVETLSGGQ 156
Cdd:COG4618 410 YLPQDVELFDG-TIAENI-------------ARFGDADPEKVVAAAKlagvhemiLRLPD-GYDTR--IGEGGARLSGGQ 472
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 157 RQGVAVARaAAFGS-KVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNmPHVFEVADRI 221
Cdd:COG4618 473 RQRIGLAR-ALYGDpRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHR-PSLLAAVDKL 536
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
27-258 |
2.50e-19 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 83.75 E-value: 2.50e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 27 FDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQvqfrSPMEAREAGIETVYQNLALSPALSIADNMFLGR 106
Cdd:TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGAS----PGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 107 E-----IRKPGVlgSMFRMLDrpamEKLARNKLSELGlmtiqniNQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAA 181
Cdd:TIGR03771 77 TghigwLRRPCV--ADFAAVR----DALRRVGLTELA-------DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTG 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 182 LGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIhrLGRRLtVIDPKEYTMSDAVAFMTGAKAVPTEPV 258
Cdd:TIGR03771 144 LDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVL--LNGRV-IADGTPQQLQDPAPWMTTFGVSDSSPL 217
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
22-237 |
3.09e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 84.40 E-value: 3.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAgIETVYQNlalspalsiADN 101
Cdd:PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK-IGMVFQN---------PDN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 102 MFLGREIRKPGVLGSMFRMLDRPAMEKLARNKLSELGLMTIQNINQAveTLSGGQRQGVAVARAAAFGSKVIIMDEPTAA 181
Cdd:PRK13650 93 QFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPA--RLSGGQKQRVAIAGAVAMRPKIIILDEATSM 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 182 LGVKESRRVLELILDVRAR-GLPIVLISHNMPHVfEVADRIHIHRLGRRLTVIDPKE 237
Cdd:PRK13650 171 LDPEGRLELIKTIKGIRDDyQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRE 226
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
5-228 |
6.48e-19 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 86.22 E-value: 6.48e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 5 PLLTARGLVK---RYGRvTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVqfrspmearEA 81
Cdd:TIGR01257 927 PGVCVKNLVKifePSGR-PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI---------ET 996
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 82 GIETVYQNLALSPA-------LSIADNMFLGREIRKpgvlgsmfRMLDRPAMEKLArnKLSELGLMtiQNINQAVETLSG 154
Cdd:TIGR01257 997 NLDAVRQSLGMCPQhnilfhhLTVAEHILFYAQLKG--------RSWEEAQLEMEA--MLEDTGLH--HKRNEEAQDLSG 1064
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517055771 155 GQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRArGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:TIGR01257 1065 GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRS-GRTIIMSTHHMDEADLLGDRIAIISQGR 1137
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
4-220 |
6.63e-19 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 83.16 E-value: 6.63e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKA-------ISGAVTpdEGVITLEGRQVQFRS-- 74
Cdd:COG1117 9 EPKIEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRClnrmndlIPGARV--EGEILLDGEDIYDPDvd 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 75 PMEAReAGIETVYQNLALSPaLSIADNMFLG---REIRKPGVLgsmfrmlD---RPAMEKLA-----RNKLSELGLmtiq 143
Cdd:COG1117 87 VVELR-RRVGMVFQKPNPFP-KSIYDNVAYGlrlHGIKSKSEL-------DeivEESLRKAAlwdevKDRLKKSAL---- 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 144 ninqaveTLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARgLPIVLISHNMPHVFEVADR 220
Cdd:COG1117 154 -------GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKD-YTIVIVTHNMQQAARVSDY 222
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
6-244 |
7.09e-19 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 83.02 E-value: 7.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 6 LLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRsPMEAR-EAGIE 84
Cdd:PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLL-PLHARaRRGIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 85 TVYQNLALSPALSIADNMFLGREIRKPgvlgsmfrmLDRPAMEKLARNKLSELGLMTIQniNQAVETLSGGQRQGVAVAR 164
Cdd:PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDD---------LSAEQREDRANELMEEFHIEHLR--DSMGQSLSGGERRRVEIAR 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 165 AAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKEYTMSDAV 244
Cdd:PRK10895 151 ALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHV 230
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
10-221 |
9.34e-19 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 85.15 E-value: 9.34e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 10 RGLVKRYG--RVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAReAGIETVY 87
Cdd:TIGR02203 334 RNVTFRYPgrDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLR-RQVALVS 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 88 QNLALSPAlSIADNMFLGR-------EIRKPGVLGSMFRMLDRpameklarnklSELGLMTiqNINQAVETLSGGQRQGV 160
Cdd:TIGR02203 413 QDVVLFND-TIANNIAYGRteqadraEIERALAAAYAQDFVDK-----------LPLGLDT--PIGENGVLLSGGQRQRL 478
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517055771 161 AVARAAAFGSKVIIMDEPTAALGvKESRRVLELILDVRARGLPIVLISHNMPHVfEVADRI 221
Cdd:TIGR02203 479 AIARALLKDAPILILDEATSALD-NESERLVQAALERLMQGRTTLVIAHRLSTI-EKADRI 537
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
10-234 |
1.24e-18 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 83.60 E-value: 1.24e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 10 RGLVKR-YGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGrqvqfRSPMEAREA---GIET 85
Cdd:COG4586 25 KGLFRReYREVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLG-----YVPFKRRKEfarRIGV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 86 VY-QNLALSPALSIADNMFLGREIRKpgvlgsmfrmLDrpamEKLARNKLSEL-GLMTIQNI-NQAVETLSGGQRQgvav 162
Cdd:COG4586 100 VFgQRSQLWWDLPAIDSFRLLKAIYR----------IP----DAEYKKRLDELvELLDLGELlDTPVRQLSLGQRM---- 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517055771 163 aR---AAAF--GSKVIIMDEPTAALGVKESRRVLELILDVRA-RGLPIVLISHNMphvfevADrihIHRLGRRLTVID 234
Cdd:COG4586 162 -RcelAAALlhRPKILFLDEPTIGLDVVSKEAIREFLKEYNReRGTTILLTSHDM------DD---IEALCDRVIVID 229
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
4-219 |
1.46e-18 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 82.52 E-value: 1.46e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKA-------ISGAVTpdEGVITLEGRQV--QFRS 74
Cdd:PRK14243 8 ETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCfnrlndlIPGFRV--EGKVTFHGKNLyaPDVD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 75 PMEAREAgIETVYQNLALSPAlSIADNMFLGREIRkpGVLGSM----FRMLDRPAMEKLARNKLSELGLmtiqninqave 150
Cdd:PRK14243 86 PVEVRRR-IGMVFQKPNPFPK-SIYDNIAYGARIN--GYKGDMdelvERSLRQAALWDEVKDKLKQSGL----------- 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517055771 151 TLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARgLPIVLISHNMPHVFEVAD 219
Cdd:PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMQQAARVSD 218
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
4-221 |
3.39e-18 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 81.37 E-value: 3.39e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVK---------RYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFrS 74
Cdd:PRK15112 2 ETLLEVRNLSKtfryrtgwfRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHF-G 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 75 PMEAREAGIETVYQNlalsPALSIADNMFLGREIRKPGVLGSmfrMLDRPAMEKLARNKLSELGLMTiQNINQAVETLSG 154
Cdd:PRK15112 81 DYSYRSQRIRMIFQD----PSTSLNPRQRISQILDFPLRLNT---DLEPEQREKQIIETLRQVGLLP-DHASYYPHMLAP 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517055771 155 GQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRI 221
Cdd:PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKqGISYIYVTQHLGMMKHISDQV 220
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
7-211 |
4.83e-18 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 80.83 E-value: 4.83e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVqfrSPMEAREAGietv 86
Cdd:PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPI---SMLSSRQLA---- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 yQNLALSPALSIADNMFLGREI----RKP-----GVLGSMFRMLDRPAMEKLARNKLSElglmtiqninQAVETLSGGQR 157
Cdd:PRK11231 76 -RRLALLPQHHLTPEGITVRELvaygRSPwlslwGRLSAEDNARVNQAMEQTRINHLAD----------RRLTDLSGGQR 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 517055771 158 QGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNM 211
Cdd:PRK11231 145 QRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL 198
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
9-209 |
5.27e-18 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 83.06 E-value: 5.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 9 ARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLeGRQVQFRSPMEAREA--GIETV 86
Cdd:TIGR03719 325 AENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-GETVKLAYVDQSRDAldPNKTV 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YQnlALSPALsiaDNMFLG-REIRKPGVLGSM-FRMLDRpamEKLarnklselglmtiqninqaVETLSGGQRQGVAVAR 164
Cdd:TIGR03719 404 WE--EISGGL---DIIKLGkREIPSRAYVGRFnFKGSDQ---QKK-------------------VGQLSGGERNRVHLAK 456
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 517055771 165 AAAFGSKVIIMDEPTAALGVkESRRVLELILDVRArGLPIVlISH 209
Cdd:TIGR03719 457 TLKSGGNVLLLDEPTNDLDV-ETLRALEEALLNFA-GCAVV-ISH 498
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
17-233 |
7.22e-18 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 82.40 E-value: 7.22e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 17 GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEG---RQVQFRSPMEAreagIETVYQNLALS 93
Cdd:TIGR01842 329 GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGadlKQWDRETFGKH----IGYLPQDVELF 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 94 PAlSIADNMFlgreirkpgvlgsmfRMLDRPAMEKL-ARNKLSELGLMtIQNINQAVET--------LSGGQRQGVAVAR 164
Cdd:TIGR01842 405 PG-TVAENIA---------------RFGENADPEKIiEAAKLAGVHEL-ILRLPDGYDTvigpggatLSGGQRQRIALAR 467
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517055771 165 AAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNmPHVFEVADRI------HIHRLGRRLTVI 233
Cdd:TIGR01842 468 ALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHR-PSLLGCVDKIlvlqdgRIARFGERDEVL 541
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
20-222 |
9.92e-18 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 78.12 E-value: 9.92e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 20 TALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfrSPMEAREAGIETVYQNLALSpALSIA 99
Cdd:cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVS--DLEKALSSLISVLNQRPYLF-DTTLR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 100 DNmfLGREirkpgvlgsmfrmldrpameklarnklselglmtiqninqavetLSGGQRQGVAVARAAAFGSKVIIMDEPT 179
Cdd:cd03247 93 NN--LGRR--------------------------------------------FSGGERQRLALARILLQDAPIVLLDEPT 126
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 517055771 180 AALGVKESRRVLELILDVrARGLPIVLISHNMPHVfEVADRIH 222
Cdd:cd03247 127 VGLDPITERQLLSLIFEV-LKDKTLIWITHHLTGI-EHMDKIL 167
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
34-221 |
1.32e-17 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 81.07 E-value: 1.32e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 34 ILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRqVQFRS------PMEAREAGIetVYQNLALSPALSIADNMflgre 107
Cdd:PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGR-VLFDAekgiclPPEKRRIGY--VFQDARLFPHYKVRGNL----- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 108 irKPGVLGSMFRMLDRP----AMEKLarnkLSELGLmtiqninqaveTLSGGQRQGVAVARAAAFGSKVIIMDEPTAALG 183
Cdd:PRK11144 98 --RYGMAKSMVAQFDKIvallGIEPL----LDRYPG-----------SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 517055771 184 VKESRRVL----ELILDVRargLPIVLISHNMPHVFEVADRI 221
Cdd:PRK11144 161 LPRKRELLpyleRLAREIN---IPILYVSHSLDEILRLADRV 199
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
21-221 |
2.29e-17 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 77.89 E-value: 2.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRqvqfrspmeareagIETVYQNLALSPAlSIAD 100
Cdd:cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS--------------IAYVSQEPWIQNG-TIRE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 101 NMFLGREIRKpgvlgsmfRMLDR--------PAMEKLARNKLSELGLMTIqninqaveTLSGGQRQGVAVARAAAFGSKV 172
Cdd:cd03250 85 NILFGKPFDE--------ERYEKvikacalePDLEILPDGDLTEIGEKGI--------NLSGGQKQRISLARAVYSDADI 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 517055771 173 IIMDEPTAALGVKESRRVLE-LILDVRARGLPIVLISHNMPHVFEvADRI 221
Cdd:cd03250 149 YLLDDPLSAVDAHVGRHIFEnCILGLLLNNKTRILVTHQLQLLPH-ADQI 197
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
5-222 |
2.40e-17 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 78.32 E-value: 2.40e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 5 PLLTARGLVKRY--GRVTA--LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQ-----FRSP 75
Cdd:PRK11629 4 ILLQCDNLCKRYqeGSVQTdvLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSklssaAKAE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 76 MEAREAGIetVYQNLALSPALSIADNMFLgreirkPGVLGSMfrmldRPA-MEKLARNKLSELGLMtiQNINQAVETLSG 154
Cdd:PRK11629 84 LRNQKLGF--IYQFHHLLPDFTALENVAM------PLLIGKK-----KPAeINSRALEMLAAVGLE--HRANHRPSELSG 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517055771 155 GQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMphvfEVADRIH 222
Cdd:PRK11629 149 GERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLqGTAFLVVTHDL----QLAKRMS 213
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
32-228 |
3.44e-17 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 77.59 E-value: 3.44e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 32 GEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAReagIETVYQNLALSPALSIADNMFLGReirKP 111
Cdd:TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRP---VSMLFQENNLFAHLTVRQNIGLGL---HP 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 112 GVlgsMFRMLDRPAMEKLARNklselglMTIQN-INQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRV 190
Cdd:TIGR01277 98 GL---KLNAEQQEKVVDAAQQ-------VGIADyLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEM 167
|
170 180 190
....*....|....*....|....*....|....*....
gi 517055771 191 LELILDV-RARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:TIGR01277 168 LALVKQLcSERQRTLLMVTHHLSDARAIASQIAVVSQGK 206
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
21-209 |
3.48e-17 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 78.04 E-value: 3.48e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREaGIETVYQNLALSPAlSIAD 100
Cdd:cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRS-MIGVVLQDTFLFSG-TIME 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 101 NMFLGREIRKpgvlgsmfrmlDRPAMEKLARNKLSEL------GLMTIqnINQAVETLSGGQRQGVAVARAAAFGSKVII 174
Cdd:cd03254 96 NIRLGRPNAT-----------DEEVIEAAKEAGAHDFimklpnGYDTV--LGENGGNLSQGERQLLAIARAMLRDPKILI 162
|
170 180 190
....*....|....*....|....*....|....*
gi 517055771 175 MDEPTAALGVKESRRVLELILDVRaRGLPIVLISH 209
Cdd:cd03254 163 LDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAH 196
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
21-228 |
4.07e-17 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 77.91 E-value: 4.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAReAGIETVYQ-NLALSPalSIA 99
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLR-RQVGVVLQeNVLFNR--SIR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 100 DNMFLGReirkPGVlgSMFRMLDRPAMEKlARNKLSELGLMTIQNINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPT 179
Cdd:cd03252 94 DNIALAD----PGM--SMERVIEAAKLAG-AHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEAT 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 517055771 180 AALGVKESRRVLELILDVRArGLPIVLISHNMPHVfEVADRIHIHRLGR 228
Cdd:cd03252 167 SALDYESEHAIMRNMHDICA-GRTVIIIAHRLSTV-KNADRIIVMEKGR 213
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
5-221 |
4.12e-17 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 80.54 E-value: 4.12e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 5 PLLTARGLVKRY----GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVqfrSPMEA-- 78
Cdd:PRK10535 3 ALLELKDIRRSYpsgeEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDV---ATLDAda 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 79 ----REAGIETVYQNLALSPALSIADNMflgrEIrkPGVlgsmFRMLDRPAMEKLARNKLSELGLMtiQNINQAVETLSG 154
Cdd:PRK10535 80 laqlRREHFGFIFQRYHLLSHLTAAQNV----EV--PAV----YAGLERKQRLLRAQELLQRLGLE--DRVEYQPSQLSG 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 155 GQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNmPHVFEVADRI 221
Cdd:PRK10535 148 GQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHD-PQVAAQAERV 213
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
20-221 |
4.94e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 78.59 E-value: 4.94e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 20 TALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEG------------RQ---VQFRSPMEAREAGIe 84
Cdd:PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGldtsdeenlwdiRNkagMVFQNPDNQIVATI- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 85 tVYQNLALSPalsiaDNmfLG---REIRKpgvlgsmfrMLDrpamEKLARNKLSELGlmtiqniNQAVETLSGGQRQGVA 161
Cdd:PRK13633 103 -VEEDVAFGP-----EN--LGippEEIRE---------RVD----ESLKKVGMYEYR-------RHAPHLLSGGQKQRVA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517055771 162 VARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEvADRI 221
Cdd:PRK13633 155 IAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKyGITIILITHYMEEAVE-ADRI 214
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
21-221 |
5.08e-17 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 80.21 E-value: 5.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVqfrspmeaREAGIETVYQNLALSP------ 94
Cdd:COG1132 355 VLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDI--------RDLTLESLRRQIGVVPqdtflf 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 95 ALSIADNMFLGReirkPGVlgsmfrmlDRPAMEKLAR--------NKLSElGLMTIqnINQAVETLSGGQRQGVAVARAA 166
Cdd:COG1132 427 SGTIRENIRYGR----PDA--------TDEEVEEAAKaaqahefiEALPD-GYDTV--VGERGVNLSGGQRQRIAIARAL 491
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 517055771 167 AFGSKVIIMDEPTAALGVKESRRVLELILDVRaRGLPIVLISHNMPHVfEVADRI 221
Cdd:COG1132 492 LKDPPILILDEATSALDTETEALIQEALERLM-KGRTTIVIAHRLSTI-RNADRI 544
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
6-237 |
6.16e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 78.21 E-value: 6.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 6 LLTARGLVKRYGR---VTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAg 82
Cdd:PRK13642 4 ILEVENLVFKYEKesdVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 83 IETVYQNlalspalsiADNMFLGREIRKPGVLGSMFRMLDRPAMEKLARNKLSELGLMTIQNINQAveTLSGGQRQGVAV 162
Cdd:PRK13642 83 IGMVFQN---------PDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPA--RLSGGQKQRVAV 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 163 ARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEvADRIHIHRLGRRLTVIDPKE 237
Cdd:PRK13642 152 AGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKyQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSE 226
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
34-221 |
6.16e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 77.78 E-value: 6.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 34 ILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREA-----GIETVYQNLALSPALSIADNmfLGREI 108
Cdd:PRK14246 38 IFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAiklrkEVGMVFQQPNPFPHLSIYDN--IAYPL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 109 RKPGVLgsmfrmlDRPAMEKLARNKLSELGLM--TIQNINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKE 186
Cdd:PRK14246 116 KSHGIK-------EKREIKKIVEECLRKVGLWkeVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVN 188
|
170 180 190
....*....|....*....|....*....|....*
gi 517055771 187 SRRVLELILDVRaRGLPIVLISHNMPHVFEVADRI 221
Cdd:PRK14246 189 SQAIEKLITELK-NEIAIVIVSHNPQQVARVADYV 222
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
6-228 |
7.53e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 77.92 E-value: 7.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 6 LLTARGLVKRY-GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAgIE 84
Cdd:PRK13652 3 LIETRDLCYSYsGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKF-VG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 85 TVYQNlalspalsiADNMFLGREIRKPGVLGSMFRMLDRPAMEKLARNKLSELGLMTIQniNQAVETLSGGQRQGVAVAR 164
Cdd:PRK13652 82 LVFQN---------PDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELR--DRVPHHLSGGEKKRVAIAG 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517055771 165 AAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETyGMTVIFSTHQLDLVPEMADYIYVMDKGR 215
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
26-220 |
1.05e-16 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 76.54 E-value: 1.05e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 26 DFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGrQVQFRSPMEAREAGIetVYQNLALSPALSIADNMFLG 105
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNG-QDHTTTPPSRRPVSM--LFQENNLFSHLTVAQNIGLG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 106 REirkPGVlgsmfrMLD---RPAMEKLARNklselglMTIQN-INQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAA 181
Cdd:PRK10771 96 LN---PGL------KLNaaqREKLHAIARQ-------MGIEDlLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSA 159
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 517055771 182 LGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADR 220
Cdd:PRK10771 160 LDPALRQEMLTLVSQVcQERQLTLLMVSHSLEDAARIAPR 199
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
5-221 |
1.08e-16 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 77.15 E-value: 1.08e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 5 PLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRS-------PME 77
Cdd:COG4598 7 PALEVRDLHKSFGDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIRLKPdrdgelvPAD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 78 ARE-----AGIETVYQNLALSPALSIADNMflgreIRKP-GVLGsmfrmLDRPAMEKLARNKLSELGLMTIQNINQAveT 151
Cdd:COG4598 87 RRQlqrirTRLGMVFQSFNLWSHMTVLENV-----IEAPvHVLG-----RPKAEAIERAEALLAKVGLADKRDAYPA--H 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517055771 152 LSGGQRQGVAVARAAAFGSKVIIMDEPTAALG---VKEsrrVLELILDVRARGLPIVLISHNMPHVFEVADRI 221
Cdd:COG4598 155 LSGGQQQRAAIARALAMEPEVMLFDEPTSALDpelVGE---VLKVMRDLAEEGRTMLVVTHEMGFARDVSSHV 224
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
21-237 |
1.16e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 77.47 E-value: 1.16e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSpmeaREAGIETVYQNLALspALSIAD 100
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTS----KQKEIKPVRKKVGV--VFQFPE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 101 NMFLGREIRKPGVLGSMFRMLDRPAMEKLARNKLSELGLmTIQNINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTA 180
Cdd:PRK13643 95 SQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGL-ADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTA 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 181 ALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKE 237
Cdd:PRK13643 174 GLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
4-237 |
1.18e-16 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 78.54 E-value: 1.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREA-- 81
Cdd:PRK10070 26 EQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVrr 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 82 -GIETVYQNLALSPALSIADNMFLGREIrkPGVlgsmfrmldrPAMEKLARnKLSELGLMTIQNINQAV-ETLSGGQRQG 159
Cdd:PRK10070 106 kKIAMVFQSFALMPHMTVLDNTAFGMEL--AGI----------NAEERREK-ALDALRQVGLENYAHSYpDELSGGMRQR 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517055771 160 VAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKE 237
Cdd:PRK10070 173 VGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKhQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDE 251
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
21-237 |
1.67e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 77.13 E-value: 1.67e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSpmeaREAGIETVYQNLALspALSIAD 100
Cdd:PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKT----KDKYIRPVRKRIGM--VFQFPE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 101 NMFLGREIRKPGVLGSM-FRMlDRPAMEKLARNKLSELGLMtiQNI-NQAVETLSGGQRQGVAVARAAAFGSKVIIMDEP 178
Cdd:PRK13646 96 SQLFEDTVEREIIFGPKnFKM-NLDEVKNYAHRLLMDLGFS--RDVmSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEP 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 179 TAALGVKESRRVLELILDVRA-RGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKE 237
Cdd:PRK13646 173 TAGLDPQSKRQVMRLLKSLQTdENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
7-221 |
1.76e-16 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 76.64 E-value: 1.76e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVItLEGrqvqfRSPM-EAREaGIET 85
Cdd:PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAG-----TAPLaEARE-DTRL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 86 VYQNLALSPALSIADNMFLGreirkpgvlgsmFRMLDRPAmeklARNKLSELGLMtiqniNQAVE---TLSGGQRQGVAV 162
Cdd:PRK11247 86 MFQDARLLPWKKVIDNVGLG------------LKGQWRDA----ALQALAAVGLA-----DRANEwpaALSGGQKQRVAL 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 163 ARAAAFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRI 221
Cdd:PRK11247 145 ARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLwQQHGFTVLLVTHDVSEAVAMADRV 204
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
16-221 |
2.13e-16 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 76.31 E-value: 2.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 16 YGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITlegRQVQFRspmeareagIETVYQNLALSPA 95
Cdd:PRK09544 14 FGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK---RNGKLR---------IGYVPQKLYLDTT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 96 LSIADNMFLgreIRKPGVlgsmfRMLD-RPAMEKLARNKLselglmtiqnINQAVETLSGGQRQGVAVARAAAFGSKVII 174
Cdd:PRK09544 82 LPLTVNRFL---RLRPGT-----KKEDiLPALKRVQAGHL----------IDAPMQKLSGGETQRVLLARALLNRPQLLV 143
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 517055771 175 MDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRI 221
Cdd:PRK09544 144 LDEPTQGVDVNGQVALYDLIDQLRRElDCAVLMVSHDLHLVMAKTDEV 191
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
4-226 |
3.38e-16 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 75.51 E-value: 3.38e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEG-VITLEGRQVQFRSPMEAREA- 81
Cdd:COG1119 1 DPLLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGERRGGEDVWELRKRi 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 82 GIetvyqnlaLSPAL--SIADNMfLGREIrkpgVLGSMFRMLDR-----PAMEKLARNKLSELGLMTIqnINQAVETLSG 154
Cdd:COG1119 81 GL--------VSPALqlRFPRDE-TVLDV----VLSGFFDSIGLyreptDEQRERARELLELLGLAHL--ADRPFGTLSQ 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517055771 155 GQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLP-IVLISHnmpHVFEVADRIHiHRL 226
Cdd:COG1119 146 GEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPtLVLVTH---HVEEIPPGIT-HVL 214
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
8-221 |
4.05e-16 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 75.50 E-value: 4.05e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 8 TARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQV-QFRSPMEAREAGIETv 86
Cdd:COG4604 3 EIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVaTTPSRELAKRLAILR- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 yQNLALSPALSIADNMFLGREIRKPGVLGSmfrmLDRPAMEKlarnKLSELGLMTIQniNQAVETLSGGQRQGVAVARAA 166
Cdd:COG4604 82 -QENHINSRLTVRELVAFGRFPYSKGRLTA----EDREIIDE----AIAYLDLEDLA--DRYLDELSGGQRQRAFIAMVL 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 517055771 167 AFGSKVIIMDEPTAALGVKESRRVLELILD-VRARGLPIVLISH--NMPHVFevADRI 221
Cdd:COG4604 151 AQDTDYVLLDEPLNNLDMKHSVQMMKLLRRlADELGKTVVIVLHdiNFASCY--ADHI 206
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
6-237 |
4.49e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 75.65 E-value: 4.49e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 6 LLTARGLVKRYGRVT-ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQF--RSPMEAREAg 82
Cdd:PRK13636 5 ILKVEELNYNYSDGThALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYsrKGLMKLRES- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 83 IETVYQNlalspalsiADNMFLGREIRKPGVLGSMFRMLDRPAMEKLARNKLSELGLMTIQniNQAVETLSGGQRQGVAV 162
Cdd:PRK13636 84 VGMVFQD---------PDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK--DKPTHCLSFGQKKRVAI 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 163 ARAAAFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKE 237
Cdd:PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMqKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKE 228
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
20-219 |
4.72e-16 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 75.69 E-value: 4.72e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 20 TALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfrspmeareagiETVYQNL-ALSPALSI 98
Cdd:PRK15056 21 TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR------------QALQKNLvAYVPQSEE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 99 ADNMF--LGREIRKPGVLGSMfRMLDRPAM-------EKLARNKLSELGlmtiqniNQAVETLSGGQRQGVAVARAAAFG 169
Cdd:PRK15056 89 VDWSFpvLVEDVVMMGRYGHM-GWLRRAKKrdrqivtAALARVDMVEFR-------HRQIGELSGGQKKRVFLARAIAQQ 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 517055771 170 SKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVAD 219
Cdd:PRK15056 161 GQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCD 210
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
22-228 |
6.66e-16 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 74.43 E-value: 6.66e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAgIETVYQNLALSpALSIADN 101
Cdd:cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSK-VSLVGQEPVLF-ARSLQDN 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 102 MFLGreirkpgvLGSM-FRMLDRPAMEKLARNKLSELGLMTIQNINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTA 180
Cdd:cd03248 108 IAYG--------LQSCsFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATS 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 517055771 181 ALGVkESRRVLELILDVRARGLPIVLISHNMPHVfEVADRIHIHRLGR 228
Cdd:cd03248 180 ALDA-ESEQQVQQALYDWPERRTVLVIAHRLSTV-ERADQILVLDGGR 225
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
8-250 |
7.78e-16 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 75.84 E-value: 7.78e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 8 TARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMearEAGIETVY 87
Cdd:PRK11000 5 TLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA---ERGVGMVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 88 QNLALSPALSIADNMFLGReirkpgvlgsmfrmldrpameKLARNKLSELGlmtiQNINQAVET-------------LSG 154
Cdd:PRK11000 82 QSYALYPHLSVAENMSFGL---------------------KLAGAKKEEIN----QRVNQVAEVlqlahlldrkpkaLSG 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 155 GQRQGVAVARAAAFGSKVIIMDEPTAalgvkesrrvlelildvrarglpivlishNMPHVFEVADRIHIHRLGRRL--TV 232
Cdd:PRK11000 137 GQRQRVAIGRTLVAEPSVFLLDEPLS-----------------------------NLDAALRVQMRIEISRLHKRLgrTM 187
|
250
....*....|....*...
gi 517055771 233 IdpkeYTMSDAVAFMTGA 250
Cdd:PRK11000 188 I----YVTHDQVEAMTLA 201
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
12-225 |
9.64e-16 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 74.62 E-value: 9.64e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 12 LVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQF------------RSPMEAR 79
Cdd:PRK10619 11 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLvrdkdgqlkvadKNQLRLL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 80 EAGIETVYQNLALSPALSIADNMflgreIRKP-GVLGsmfrmLDRPAMEKLARNKLSELGLMTIQNINQAVEtLSGGQRQ 158
Cdd:PRK10619 91 RTRLTMVFQHFNLWSHMTVLENV-----MEAPiQVLG-----LSKQEARERAVKYLAKVGIDERAQGKYPVH-LSGGQQQ 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517055771 159 GVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADR-IHIHR 225
Cdd:PRK10619 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHvIFLHQ 227
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
17-221 |
1.03e-15 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 76.15 E-value: 1.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 17 GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEG---RQVQFRSpmeAREAgIETVYQNlALS 93
Cdd:PRK13657 346 NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGtdiRTVTRAS---LRRN-IAVVFQD-AGL 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 94 PALSIADNMFLGREirkPGVLGSMFRMLDRP-AMEKLARNklsELGLMTiqNINQAVETLSGGQRQGVAVARAAAFGSKV 172
Cdd:PRK13657 421 FNRSIEDNIRVGRP---DATDEEMRAAAERAqAHDFIERK---PDGYDT--VVGERGRQLSGGERQRLAIARALLKDPPI 492
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 517055771 173 IIMDEPTAALGVKESRRVLELILDVRaRGLPIVLISHNMPHVFEvADRI 221
Cdd:PRK13657 493 LILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLSTVRN-ADRI 539
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
5-228 |
1.10e-15 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 74.15 E-value: 1.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 5 PLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQV-QFRSPMEAREAgI 83
Cdd:PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDItDWQTAKIMREA-V 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 ETVYQNLALSPALSIADNMFLGreirkpGVLGSMFRMLDRPAmeklarnKLSELGLMTIQNINQAVETLSGGQRQGVAVA 163
Cdd:PRK11614 83 AIVPEGRRVFSRMTVEENLAMG------GFFAERDQFQERIK-------WVYELFPRLHERRIQRAGTMSGGEQQMLAIG 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517055771 164 RAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:PRK11614 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGH 214
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
7-209 |
1.23e-15 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 73.30 E-value: 1.23e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAReaGIETV 86
Cdd:cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIAR--GLLYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YQNLALSPALSIADNM-FLGREIRKPGVLgsmfrmldrpameklarNKLSELGLMTIQNInqAVETLSGGQRQGVAVARA 165
Cdd:cd03231 79 GHAPGIKTTLSVLENLrFWHADHSDEQVE-----------------EALARVGLNGFEDR--PVAQLSAGQQRRVALARL 139
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 517055771 166 AAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISH 209
Cdd:cd03231 140 LLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
21-221 |
1.55e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 74.02 E-value: 1.55e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAgIETVYQNlalspalsiAD 100
Cdd:PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH-IGIVFQN---------PD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 101 NMFLGREIRKPGVLGSMFRMLDRPAMEKLARNKLSELGLmtIQNINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTA 180
Cdd:PRK13648 94 NQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDM--LERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATS 171
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 517055771 181 ALGVKESRRVLELILDVRA-RGLPIVLISHNMPHVFEvADRI 221
Cdd:PRK13648 172 MLDPDARQNLLDLVRKVKSeHNITIISITHDLSEAME-ADHV 212
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
5-211 |
1.57e-15 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 73.95 E-value: 1.57e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 5 PLLTARGLVKRY---------GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQV-QF-R 73
Cdd:PRK10419 2 TLLNVSGLSHHYahgglsgkhQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLaKLnR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 74 SPMEAREAGIETVYQNL--ALSPALSIadnmflGREIRKPgvlgsMFRMLDRPAMEKLARNK--LSELGLmTIQNINQAV 149
Cdd:PRK10419 82 AQRKAFRRDIQMVFQDSisAVNPRKTV------REIIREP-----LRHLLSLDKAERLARASemLRAVDL-DDSVLDKRP 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517055771 150 ETLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNM 211
Cdd:PRK10419 150 PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQfGTACLFITHDL 212
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
7-225 |
2.46e-15 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 70.94 E-value: 2.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITlegrqvqfrspmeaREAGIETV 86
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT--------------WGSTVKIG 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YqnlalspalsiadnmflgreirkpgvlgsmfrmldrpameklarnklselglmtiqninqaVETLSGGQRQGVAVARAA 166
Cdd:cd03221 67 Y-------------------------------------------------------------FEQLSGGEKMRLALAKLL 85
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517055771 167 AFGSKVIIMDEPTAALGVkESRRVLELILdvraRGLP--IVLISHNMPHVFEVADRI-HIHR 225
Cdd:cd03221 86 LENPNLLLLDEPTNHLDL-ESIEALEEAL----KEYPgtVILVSHDRYFLDQVATKIiELED 142
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
21-237 |
2.56e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 73.63 E-value: 2.56e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSpmeaREAGIETVYQNLALspALSIAD 100
Cdd:PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTS----KNKDIKQIRKKVGL--VFQFPE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 101 NMFLGREIRKPGVLGSMFRMLDRPAMEKLARNKLSELGLmTIQNINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTA 180
Cdd:PRK13649 96 SQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGI-SESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 181 ALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKE 237
Cdd:PRK13649 175 GLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
24-223 |
3.03e-15 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 74.70 E-value: 3.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 24 NADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAGIetVY-----QNLAL---SP- 94
Cdd:PRK15439 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL--VYlpedrQSSGLyldAPl 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 95 -----ALSIADNMFLGREIRKPGVLGSMFRMLDRpameklarnKLSElglmtiqnINQAVETLSGGQRQGVAVARAAAFG 169
Cdd:PRK15439 359 awnvcALTHNRRGFWIKPARENAVLERYRRALNI---------KFNH--------AEQAARTLSGGNQQKVLIAKCLEAS 421
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 517055771 170 SKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHI 223
Cdd:PRK15439 422 PQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLV 475
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
21-223 |
3.37e-15 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 75.05 E-value: 3.37e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfrspmeareAGIETVYQNLALSPALSIAD 100
Cdd:TIGR01257 1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL---------TNISDVHQNMGYCPQFDAID 2024
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 101 NMFLGREIRkpgVLGSMFRMLDRPAMEKLARNKLSELGLMTIQNinQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTA 180
Cdd:TIGR01257 2025 DLLTGREHL---YLYARLRGVPAEEIEKVANWSIQSLGLSLYAD--RLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 517055771 181 ALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHI 223
Cdd:TIGR01257 2100 GMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAI 2142
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
22-223 |
4.19e-15 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 72.41 E-value: 4.19e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISG--AVTPDEGVITLEGRQVQFRSPME-AReAGIETVYQNlalsPAlsi 98
Cdd:COG0396 16 LKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGhpKYEVTSGSILLDGEDILELSPDErAR-AGIFLAFQY----PV--- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 99 adnmflgrEIrkPGVLGSMF----------RMLDRPAMEKLARNKLSELGL---MTIQNINqavETLSGGQRQGVAVARA 165
Cdd:COG0396 88 --------EI--PGVSVSNFlrtalnarrgEELSAREFLKLLKEKMKELGLdedFLDRYVN---EGFSGGEKKRNEILQM 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517055771 166 AAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHN---MPHVfeVADRIHI 223
Cdd:COG0396 155 LLLEPKLAILDETDSGLDIDALRIVAEGVNKLRSPDRGILIITHYqriLDYI--KPDFVHV 213
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-228 |
4.66e-15 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 72.82 E-value: 4.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 2 AREPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGV-----ITLEGRQV-QFRSP 75
Cdd:PRK14271 17 AAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYrysgdVLLGGRSIfNYRDV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 76 MEAREAgIETVYQNLALSPaLSIADNMFLGREIRKpgvlgsmfrMLDRPAMEKLARNKLSELGL--MTIQNINQAVETLS 153
Cdd:PRK14271 97 LEFRRR-VGMLFQRPNPFP-MSIMDNVLAGVRAHK---------LVPRKEFRGVAQARLTEVGLwdAVKDRLSDSPFRLS 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517055771 154 GGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARgLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:PRK14271 166 GGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR-LTVIIVTHNLAQAARISDRAALFFDGR 239
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
16-232 |
1.38e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 71.41 E-value: 1.38e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 16 YGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPD-----EGVITLEGRQVQFR--SPMEAREAgIETVYQ 88
Cdd:PRK14267 14 YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNeearvEGEVRLFGRNIYSPdvDPIEVRRE-VGMVFQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 89 NLALSPALSIADNMFLGREIRKpgvLGSMFRMLDRPAMEKLARNKLSElglmTIQN-INQAVETLSGGQRQGVAVARAAA 167
Cdd:PRK14267 93 YPNPFPHLTIYDNVAIGVKLNG---LVKSKKELDERVEWALKKAALWD----EVKDrLNDYPSNLSGGQRQRLVIARALA 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517055771 168 FGSKVIIMDEPTAALGVKESRRVLELILDVRaRGLPIVLISHNMPHVFEVADRIHIHRLGRRLTV 232
Cdd:PRK14267 166 MKPKILLMDEPTANIDPVGTAKIEELLFELK-KEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEV 229
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
7-255 |
3.03e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 70.89 E-value: 3.03e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGR-----VTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREA 81
Cdd:PRK13651 3 IKVKNIVKIFNKklpteLKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 82 GIETVYQNLALSPALSIAdnmflgREIRKP-GVL-------------------GSMFRMLDRPAMEKLARNKLSELGLmT 141
Cdd:PRK13651 83 VLEKLVIQKTRFKKIKKI------KEIRRRvGVVfqfaeyqlfeqtiekdiifGPVSMGVSKEEAKKRAAKYIELVGL-D 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 142 IQNINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAAL---GVKEsrrVLELILDVRARGLPIVLISHNMPHVFEVA 218
Cdd:PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLdpqGVKE---ILEIFDNLNKQGKTIILVTHDLDNVLEWT 232
|
250 260 270
....*....|....*....|....*....|....*..
gi 517055771 219 DRIHIHRLGRrlTVIDPKEYTMSDAVAFMTGAKAVPT 255
Cdd:PRK13651 233 KRTIFFKDGK--IIKDGDTYDILSDNKFLIENNMEPP 267
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
6-209 |
3.08e-14 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 69.45 E-value: 3.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 6 LLTARGL-VKRYGRVTaLDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfrspmEAREAgie 84
Cdd:PRK13538 1 MLEARNLaCERDERIL-FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIR-----RQRDE--- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 85 tVYQNL-------ALSPALSIADNM-FLGReirkpgvlgsMFRMLDRPAMeklaRNKLSELGLMTIQNInqAVETLSGGQ 156
Cdd:PRK13538 72 -YHQDLlylghqpGIKTELTALENLrFYQR----------LHGPGDDEAL----WEALAQVGLAGFEDV--PVRQLSAGQ 134
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 517055771 157 RQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISH 209
Cdd:PRK13538 135 QRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
3-186 |
3.33e-14 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 71.76 E-value: 3.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 3 REPLLTARGLVKRYGrvtaldnaDFDL-------YPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRqVQFRsP 75
Cdd:PRK13409 337 RETLVEYPDLTKKLG--------DFSLeveggeiYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELK-ISYK-P 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 76 MEAREAGIETVYQNLAlspalSIADNM---FLGREIRKPGVLGsmfRMLDRPameklarnklselglmtiqninqaVETL 152
Cdd:PRK13409 407 QYIKPDYDGTVEDLLR-----SITDDLgssYYKSEIIKPLQLE---RLLDKN------------------------VKDL 454
|
170 180 190
....*....|....*....|....*....|....
gi 517055771 153 SGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKE 186
Cdd:PRK13409 455 SGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQ 488
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1-178 |
3.99e-14 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 71.03 E-value: 3.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 1 MAReplLTARGLVKRY-GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVqfrSPMEAR 79
Cdd:PRK11650 1 MAG---LKLQAVRKSYdGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVV---NELEPA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 80 EAGIETVYQNLALSPALSIADNMFLGREIRKpgvlgsmfrmLDRPAMEKLARN--KLSELGLMTIQNINQavetLSGGQR 157
Cdd:PRK11650 75 DRDIAMVFQNYALYPHMSVRENMAYGLKIRG----------MPKAEIEERVAEaaRILELEPLLDRKPRE----LSGGQR 140
|
170 180
....*....|....*....|.
gi 517055771 158 QGVAVARAAAFGSKVIIMDEP 178
Cdd:PRK11650 141 QRVAMGRAIVREPAVFLFDEP 161
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
31-230 |
4.11e-14 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 71.45 E-value: 4.11e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 31 PGEILAVIGDNGAGKSSLIKAISGAVTPD--EGVITLEGRQVqfrSPMEAREAGIetVYQNLALSPALSIADNMFLGREI 108
Cdd:PLN03211 93 PGEILAVLGPSGSGKSTLLNALAGRIQGNnfTGTILANNRKP---TKQILKRTGF--VTQDDILYPHLTVRETLVFCSLL 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 109 RKPgvlgsmfRMLDRPAMEKLARNKLSELGLMTIQNI---NQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVK 185
Cdd:PLN03211 168 RLP-------KSLTKQEKILVAESVISELGLTKCENTiigNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDAT 240
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 517055771 186 ESRRVLELILDVRARGLPIVLISHN-MPHVFEVADRIHIHRLGRRL 230
Cdd:PLN03211 241 AAYRLVLTLGSLAQKGKTIVTSMHQpSSRVYQMFDSVLVLSEGRCL 286
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
1-236 |
4.61e-14 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 69.42 E-value: 4.61e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 1 MAREPLLTARGLVKRYGR----VTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQV-----Q 71
Cdd:PRK10584 1 MPAENIVEVHHLKKSVGQgeheLSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLhqmdeE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 72 FRSPMEAREAGIetVYQNLALSPALSIADNMFLgreirkPGVLGSMFrmlDRPAMEKlARNKLSELGLMtiQNINQAVET 151
Cdd:PRK10584 81 ARAKLRAKHVGF--VFQSFMLIPTLNALENVEL------PALLRGES---SRQSRNG-AKALLEQLGLG--KRLDHLPAQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 152 LSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHnmphvfevaDRIHIHRLGRRL 230
Cdd:PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLnREHGTTLILVTH---------DLQLAARCDRRL 217
|
....*.
gi 517055771 231 TVIDPK 236
Cdd:PRK10584 218 RLVNGQ 223
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
21-221 |
6.51e-14 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 70.82 E-value: 6.51e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAgIETVYQNLALSPAlSIAD 100
Cdd:PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ-VALVSQNVHLFND-TIAN 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 101 NMFLGREirkpgvlgsmfRMLDRPAMEKLAR--------NKLsELGLMTIQNINQAveTLSGGQRQGVAVARAAAFGSKV 172
Cdd:PRK11176 436 NIAYART-----------EQYSREQIEEAARmayamdfiNKM-DNGLDTVIGENGV--LLSGGQRQRIAIARALLRDSPI 501
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 517055771 173 IIMDEPTAALGVkESRRVLELILDVRARGLPIVLISHNMPHVfEVADRI 221
Cdd:PRK11176 502 LILDEATSALDT-ESERAIQAALDELQKNRTSLVIAHRLSTI-EKADEI 548
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
31-242 |
7.82e-14 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 69.43 E-value: 7.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 31 PGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQV-QFRSPMEAREAGIetvyqnlaLSPALSIADNMFLgREI- 108
Cdd:PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLeSWSSKAFARKVAY--------LPQQLPAAEGMTV-RELv 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 109 ---RKP--GVLGSmFRMLDRPAMEKlarnKLSELGLMTIQNinQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAALG 183
Cdd:PRK10575 107 aigRYPwhGALGR-FGAADREKVEE----AISLVGLKPLAH--RLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 184 VKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKEYTMSD 242
Cdd:PRK10575 180 IAHQVDVLALVHRLsQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGE 239
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
29-221 |
7.88e-14 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 70.85 E-value: 7.88e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 29 LYPGEILAVIGDNGAGKSSLIKAISGAVTPD---EGVITLEGRQVQfRSPMEAREAgieTVYQNLALSPALSIADNMflg 105
Cdd:TIGR00955 48 AKPGELLAVMGSSGAGKTTLMNALAFRSPKGvkgSGSVLLNGMPID-AKEMRAISA---YVQQDDLFIPTLTVREHL--- 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 106 reirkpgVLGSMFRMLDR-PAMEKLARNK--LSELGLMTIQN----INQAVETLSGGQRQGVAVARAAAFGSKVIIMDEP 178
Cdd:TIGR00955 121 -------MFQAHLRMPRRvTKKEKRERVDevLQALGLRKCANtrigVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP 193
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 517055771 179 TAALGVKESRRVLELILDVRARGLPIVLISHNmP--HVFEVADRI 221
Cdd:TIGR00955 194 TSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQ-PssELFELFDKI 237
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
21-221 |
9.28e-14 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 68.41 E-value: 9.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAgIETVYQNLALSPAlSIAD 100
Cdd:cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQ-IGLVSQDVFLFND-TVAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 101 NMFLGReirkPGVlgsmfrmlDRPAMEKLARN-KLSELglmtIQNINQAVET--------LSGGQRQGVAVARAAAFGSK 171
Cdd:cd03251 95 NIAYGR----PGA--------TREEVEEAARAaNAHEF----IMELPEGYDTvigergvkLSGGQRQRIAIARALLKDPP 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 517055771 172 VIIMDEPTAALGVkESRRVLELILDVRARGLPIVLISHNMPHVfEVADRI 221
Cdd:cd03251 159 ILILDEATSALDT-ESERLVQAALERLMKNRTTFVIAHRLSTI-ENADRI 206
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
22-221 |
1.21e-13 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 70.14 E-value: 1.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQ-VQFRSPMEAREAGIetVYQnlalSPAL---S 97
Cdd:TIGR00958 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPlVQYDHHYLHRQVAL--VGQ----EPVLfsgS 570
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 98 IADNMFLG-REIRKPGVLGSmfrmldrpAMEKLARNKLSELGLMTIQNINQAVETLSGGQRQGVAVARAAAFGSKVIIMD 176
Cdd:TIGR00958 571 VRENIAYGlTDTPDEEIMAA--------AKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILD 642
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 517055771 177 EPTAALGVKESRRVLElilDVRARGLPIVLISHNMPHVfEVADRI 221
Cdd:TIGR00958 643 EATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTV-ERADQI 683
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
21-239 |
1.24e-13 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 70.14 E-value: 1.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEA------------REAGIetvYQ 88
Cdd:PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAinhgfalvteerRSTGI---YA 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 89 NLALSPAlSIADNMflgREIRKPgvlgsmFRMLDRPAMEKLARNKLSELGLMTIQNiNQAVETLSGGQRQGVAVARAAAF 168
Cdd:PRK10982 340 YLDIGFN-SLISNI---RNYKNK------VGLLDNSRMKSDTQWVIDSMRVKTPGH-RTQIGSLSGGNQQKVIIGRWLLT 408
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517055771 169 GSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKEYT 239
Cdd:PRK10982 409 QPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTTT 479
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
10-211 |
1.32e-13 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 70.12 E-value: 1.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 10 RGLVKR-YGRVTALDNADFDLYPGEILAVIGDNGAGKSS----LIKAIsgavtPDEGVITLEGRQVQFRS-----PMEAR 79
Cdd:PRK15134 289 KGILKRtVDHNVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLI-----NSQGEIWFDGQPLHNLNrrqllPVRHR 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 80 eagIETVYQ--NLALSPALSIADNMFLGREIRKPgvlgsmfrMLDRPAMEKLARNKLSELGLMTIQNINQAVEtLSGGQR 157
Cdd:PRK15134 364 ---IQVVFQdpNSSLNPRLNVLQIIEEGLRVHQP--------TLSAAQREQQVIAVMEEVGLDPETRHRYPAE-FSGGQR 431
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 517055771 158 QGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNM 211
Cdd:PRK15134 432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKhQLAYLFISHDL 486
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
21-237 |
1.38e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 68.88 E-value: 1.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGViTLEGrqvQFRSPmeareAGIETVYQNLALSPALSIA- 99
Cdd:PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQ-TIVG---DYAIP-----ANLKKIKEVKRLRKEIGLVf 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 100 ---DNMFLGREIRKPGVLGSMFRMLDRPAMEKlarnKLSELgLMTIQNINQAVE----TLSGGQRQGVAVARAAAFGSKV 172
Cdd:PRK13645 97 qfpEYQLFQETIEKDIAFGPVNLGENKQEAYK----KVPEL-LKLVQLPEDYVKrspfELSGGQKRRVALAGIIAMDGNT 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 173 IIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPKE 237
Cdd:PRK13645 172 LVLDEPTGGLDPKGEEDFINLFERLnKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
20-209 |
1.44e-13 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 69.87 E-value: 1.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 20 TALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVtPDEGVITLEGRQVQFRSPMEAREAgIETVYQNLALsPALSIA 99
Cdd:PRK11174 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKH-LSWVGQNPQL-PHGTLR 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 100 DNMFLGREirkpgvlgsmfRMLDRPAMEKLARNKLSE------LGLMTIqnINQAVETLSGGQRQGVAVARAAAFGSKVI 173
Cdd:PRK11174 441 DNVLLGNP-----------DASDEQLQQALENAWVSEflpllpQGLDTP--IGDQAAGLSVGQAQRLALARALLQPCQLL 507
|
170 180 190
....*....|....*....|....*....|....*.
gi 517055771 174 IMDEPTAALGVKESRRVLELILDVrARGLPIVLISH 209
Cdd:PRK11174 508 LLDEPTASLDAHSEQLVMQALNAA-SRRQTTLMVTH 542
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
21-235 |
1.46e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 68.61 E-value: 1.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAR-EAGI-----------ETVYQ 88
Cdd:PRK13647 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRsKVGLvfqdpddqvfsSTVWD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 89 NLALSPAlsiadNMFLGREirkpGVLGSMFRMLDRPAMEKLArnklselglmtiqniNQAVETLSGGQRQGVAVARAAAF 168
Cdd:PRK13647 100 DVAFGPV-----NMGLDKD----EVERRVEEALKAVRMWDFR---------------DKPPYHLSYGQKKRVAIAGVLAM 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 169 GSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDP 235
Cdd:PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK 222
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
9-209 |
1.61e-13 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 69.76 E-value: 1.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 9 ARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLeGRQV------QFRSPMEAReag 82
Cdd:PRK11819 327 AENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GETVklayvdQSRDALDPN--- 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 83 iETVYQnlALSPALsiaDNMFLG-REIRKPGVLGSM-FRMLDRpameklarnklselglmtiqniNQAVETLSGGQRQGV 160
Cdd:PRK11819 403 -KTVWE--EISGGL---DIIKVGnREIPSRAYVGRFnFKGGDQ----------------------QKKVGVLSGGERNRL 454
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 517055771 161 AVARAAAFGSKVIIMDEPTAALGVkESRRVLELILDVRArGLPIVlISH 209
Cdd:PRK11819 455 HLAKTLKQGGNVLLLDEPTNDLDV-ETLRALEEALLEFP-GCAVV-ISH 500
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
21-211 |
2.37e-13 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 67.21 E-value: 2.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQV-QFRS---PMEAREAGI----------ETV 86
Cdd:PRK10908 17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDItRLKNrevPFLRRQIGMifqdhhllmdRTV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YQNLALSPALSIADnmflGREIRKpgvlgSMFRMLDRPAMEKLARNklselglMTIQninqavetLSGGQRQGVAVARAA 166
Cdd:PRK10908 97 YDNVAIPLIIAGAS----GDDIRR-----RVSAALDKVGLLDKAKN-------FPIQ--------LSGGEQQRVGIARAV 152
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 517055771 167 AFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNM 211
Cdd:PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI 197
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
2-228 |
2.65e-13 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 68.60 E-value: 2.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 2 AREPLLTARGLVKRY----GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPD---EGVITLEGRQV---Q 71
Cdd:PRK09473 8 QADALLDVKDLRVTFstpdGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANgriGGSATFNGREIlnlP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 72 FRSPMEAREAGIETVYQN--LALSPALSIADNMF----LGREIRKPGVLGSMFRMLDRPAMEKlARNKlselglmtiqnI 145
Cdd:PRK09473 88 EKELNKLRAEQISMIFQDpmTSLNPYMRVGEQLMevlmLHKGMSKAEAFEESVRMLDAVKMPE-ARKR-----------M 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 146 NQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRIHIH 224
Cdd:PRK09473 156 KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELkREFNTAIIMITHDLGVVAGICDKVLVM 235
|
....
gi 517055771 225 RLGR 228
Cdd:PRK09473 236 YAGR 239
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
27-221 |
3.45e-13 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 67.27 E-value: 3.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 27 FDLYPGEILAVIGDNGAGKSSLIKAISGaVTPDEGVITLEGRQVQFRSPME-----------AREAGIETVYQNLALS-P 94
Cdd:PRK03695 17 AEVRAGEILHLVGPNGAGKSTLLARMAG-LLPGSGSIQFAGQPLEAWSAAElarhraylsqqQTPPFAMPVFQYLTLHqP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 95 ALS-IADNMFLGREirkpgvLGSMFRMLDrpameKLARNklselglmtiqninqaVETLSGGQRQGVAVarAAAF----- 168
Cdd:PRK03695 96 DKTrTEAVASALNE------VAEALGLDD-----KLGRS----------------VNQLSGGEWQRVRL--AAVVlqvwp 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 169 ----GSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRI 221
Cdd:PRK03695 147 dinpAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRV 203
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
17-221 |
3.87e-13 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 67.17 E-value: 3.87e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 17 GRVTALdNADFDlyPGEILAVIGDNGAGKSSLIKAISGaVTPDEGVITLEGRQV---------QFRS--PMEAREAGIET 85
Cdd:COG4138 10 GRLGPI-SAQVN--AGELIHLIGPNGAGKSTLLARMAG-LLPGQGEILLNGRPLsdwsaaelaRHRAylSQQQSPPFAMP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 86 VYQNLALSPALSIADNMflgrEIRKPGVLGSMFRMLDrpameKLARnklselglmtiqNINQavetLSGGQRQGVavaR- 164
Cdd:COG4138 86 VFQYLALHQPAGASSEA----VEQLLAQLAEALGLED-----KLSR------------PLTQ----LSGGEWQRV---Rl 137
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 165 AAAF---------GSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRI 221
Cdd:COG4138 138 AAVLlqvwptinpEGQLLLLDEPMNSLDVAQQAALDRLLRELCQQGITVVMSSHDLNHTLRHADRV 203
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
28-239 |
3.91e-13 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 67.05 E-value: 3.91e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 28 DLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRsP--MEAREAGieTVYQNLAlspalSIADNM--- 102
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYK-PqyIKADYEG--TVRDLLS-----SITKDFyth 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 103 -FLGREIRKPgvlgsmfrmldrpameklarnklselgLMTIQNINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAA 181
Cdd:cd03237 93 pYFKTEIAKP---------------------------LQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAY 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517055771 182 LGVKESRRVLELIldvrARglpivLISHNMPHVFEVA-DRIHIHRLGRRLTVID--PKEYT 239
Cdd:cd03237 146 LDVEQRLMASKVI----RR-----FAENNEKTAFVVEhDIIMIDYLADRLIVFEgePSVNG 197
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
17-228 |
7.19e-13 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 67.96 E-value: 7.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 17 GRVTALDNADFDLYPGEILAVIGDNGAGKS-------SLIKAISGAVTPDEGVITLEGRQV-----QFRSPME-AREAGI 83
Cdd:PRK10261 27 QKIAAVRNLSFSLQRGETLAIVGESGSGKSvtalalmRLLEQAGGLVQCDKMLLRRRSRQVielseQSAAQMRhVRGADM 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 ETVYQN--LALSPALS----IADNMFLGREIRKPGVLGSMFRMLDRPameklarnKLSELGLMTIQNINQavetLSGGQR 157
Cdd:PRK10261 107 AMIFQEpmTSLNPVFTvgeqIAESIRLHQGASREEAMVEAKRMLDQV--------RIPEAQTILSRYPHQ----LSGGMR 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517055771 158 QGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:PRK10261 175 QRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEmSMGVIFITHDMGVVAEIADRVLVMYQGE 246
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
6-223 |
1.20e-12 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 65.94 E-value: 1.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 6 LLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQ--FRSPMEAREAGI 83
Cdd:PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPamSRSRLYTVRKRM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 84 ETVYQNLALSPALSIADNM-FLGREIRKpgvlgsmfrmLDRPAMEKLARNKLSELGLMTIQNINQAveTLSGGQRQGVAV 162
Cdd:PRK11831 87 SMLFQSGALFTDMNVFDNVaYPLREHTQ----------LPAPLLHSTVMMKLEAVGLRGAAKLMPS--ELSGGMARRAAL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 163 ARAAAFGSKVIIMDEPTAA-----LGVkesrrVLELILDV-RARGLPIVLISHNMPHVFEVADRIHI 223
Cdd:PRK11831 155 ARAIALEPDLIMFDEPFVGqdpitMGV-----LVKLISELnSALGVTCVVVSHDVPEVLSIADHAYI 216
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
32-221 |
1.33e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 66.20 E-value: 1.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 32 GEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfrspMEAREAGIETVYQNLALspALSIADNMFLGREIRKP 111
Cdd:PRK13634 33 GSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVIT----AGKKNKKLKPLRKKVGI--VFQFPEHQLFEETVEKD 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 112 GVLGSM-FRMLDRPAmEKLARNKLSELGLmtiqniNQAVET-----LSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVK 185
Cdd:PRK13634 107 ICFGPMnFGVSEEDA-KQKAREMIELVGL------PEELLArspfeLSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK 179
|
170 180 190
....*....|....*....|....*....|....*..
gi 517055771 186 ESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRI 221
Cdd:PRK13634 180 GRKEMMEMFYKLhKEKGLTTVLVTHSMEDAARYADQI 216
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
3-221 |
1.85e-12 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 66.73 E-value: 1.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 3 REPLLTARGLVKRYGrvtaldnaDFDL-------YPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGR---QVQF 72
Cdd:COG1245 338 EETLVEYPDLTKSYG--------GFSLeveggeiREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVDEDLKisyKPQY 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 73 RSP-MEareagiETVYQNLalspalsiadnmflgREIRKPGVLGSMFRmldrpamEKLARnklsELGLMTIqnINQAVET 151
Cdd:COG1245 410 ISPdYD------GTVEEFL---------------RSANTDDFGSSYYK-------TEIIK----PLGLEKL--LDKNVKD 455
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 152 LSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKES-------RRVlelildVRARGLPIVLISHNMPHVFEVADRI 221
Cdd:COG1245 456 LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRlavakaiRRF------AENRGKTAMVVDHDIYLIDYISDRL 526
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
22-221 |
2.28e-12 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 64.60 E-value: 2.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDE---GVITLEGRQvqfRSPMEAREAgIETVYQNLALSPALSI 98
Cdd:cd03234 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGttsGQILFNGQP---RKPDQFQKC-VAYVRQDDILLPGLTV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 99 ADNMFLGREIRKPgvlgsmfRMLDRPAMEKL-ARNKLSELGLMTIQniNQAVETLSGGQRQGVAVARAAAFGSKVIIMDE 177
Cdd:cd03234 99 RETLTYTAILRLP-------RKSSDAIRKKRvEDVLLRDLALTRIG--GNLVKGISGGERRRVSIAVQLLWDPKVLILDE 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 517055771 178 PTAALgvkESRRVLELILDVR--ARGLPIVLISHNMPH--VFEVADRI 221
Cdd:cd03234 170 PTSGL---DSFTALNLVSTLSqlARRNRIVILTIHQPRsdLFRLFDRI 214
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
23-228 |
2.53e-12 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 64.72 E-value: 2.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 23 DNADFDLYPGEILAVIGDNGAGKSSLIKAISG----AVTPDEGVITLEGRQVqfrSPMEAREAGIETVYQN--LALSPAL 96
Cdd:PRK10418 20 HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGilpaGVRQTAGRVLLDGKPV---APCALRGRKIATIMQNprSAFNPLH 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 97 SIADNmflGREirkpgvlgsMFRMLDRPAMEKLARNKLSELGLMTIQNINQAVE-TLSGGQRQGVAVARAAAFGSKVIIM 175
Cdd:PRK10418 97 TMHTH---ARE---------TCLALGKPADDATLTAALEAVGLENAARVLKLYPfEMSGGMLQRMMIALALLCEAPFIIA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 517055771 176 DEPTAALGVKESRRVLELILD-VRARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:PRK10418 165 DEPTTDLDVVAQARILDLLESiVQKRALGMLLVTHDMGVVARLADDVAVMSHGR 218
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
16-234 |
2.91e-12 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 66.13 E-value: 2.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 16 YGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFR---SPMEARE--------AGIE 84
Cdd:PRK11147 13 FSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARlqqDPPRNVEgtvydfvaEGIE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 85 TVYQNLALSPALS--IADNMflgreirkpgvlgsMFRMLDRpaMEKLaRNKLSELGLMTIQN-INQAVET---------- 151
Cdd:PRK11147 93 EQAEYLKRYHDIShlVETDP--------------SEKNLNE--LAKL-QEQLDHHNLWQLENrINEVLAQlgldpdaals 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 152 -LSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVkESRRVLE-LILDVRArglPIVLISHnmphvfevaDRIHIHRLGRR 229
Cdd:PRK11147 156 sLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDI-ETIEWLEgFLKTFQG---SIIFISH---------DRSFIRNMATR 222
|
....*
gi 517055771 230 LTVID 234
Cdd:PRK11147 223 IVDLD 227
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
22-209 |
2.95e-12 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 63.82 E-value: 2.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVqfRSPMEAREAGIETVYQNLALSPALSIADN 101
Cdd:PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI--KKDLCTYQKQLCFVGHRSGINPYLTLREN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 102 MFL-------GREIRKPGVLGSMFRMLDRPAmeklarnklselGLmtiqninqavetLSGGQRQGVAVARAAAFGSKVII 174
Cdd:PRK13540 95 CLYdihfspgAVGITELCRLFSLEHLIDYPC------------GL------------LSSGQKRQVALLRLWMSKAKLWL 150
|
170 180 190
....*....|....*....|....*....|....*
gi 517055771 175 MDEPTAALGVKESRRVLELILDVRARGLPIVLISH 209
Cdd:PRK13540 151 LDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSH 185
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
22-228 |
3.25e-12 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 63.70 E-value: 3.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISG--AVTPDEGVITLEGRQVQFRSPMEAREAGIETVYQNlalsPAlsia 99
Cdd:cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGhpKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQY----PP---- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 100 dnmflgrEIrkPGVlgsmfrmldrpameklarnKLSELglmtIQNINqavETLSGGQRQGVAVARAAAFGSKVIIMDEPT 179
Cdd:cd03217 88 -------EI--PGV-------------------KNADF----LRYVN---EGFSGGEKKRNEILQLLLLEPDLAILDEPD 132
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 517055771 180 AALGVKESRRVLELILDVRARGLPIVLISHNmPHVFE--VADRIHIHRLGR 228
Cdd:cd03217 133 SGLDIDALRLVAEVINKLREEGKSVLIITHY-QRLLDyiKPDRVHVLYDGR 182
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
11-182 |
3.66e-12 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 63.59 E-value: 3.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 11 GLVKRYGR--VTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfrspmearEAGIETVYQ 88
Cdd:cd03369 11 NLSVRYAPdlPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDIS--------TIPLEDLRS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 89 NLALSPalsiadnmflgreiRKPGVL-GSMFRMLDRpameklaRNKLSELGLMTIQNINQAVETLSGGQRQGVAVARAAA 167
Cdd:cd03369 83 SLTIIP--------------QDPTLFsGTIRSNLDP-------FDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALL 141
|
170
....*....|....*
gi 517055771 168 FGSKVIIMDEPTAAL 182
Cdd:cd03369 142 KRPRVLVLDEATASI 156
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
19-209 |
4.31e-12 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 64.10 E-value: 4.31e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 19 VTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREAgIETVYQNlalsPAL-- 96
Cdd:cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQ-IGLVSQE----PVLfd 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 97 -SIADNMFLGREirkpgvlgsmfrmlDRPAMEKLARNKLSELgLMTIQNINQAVET--------LSGGQRQGVAVARAAA 167
Cdd:cd03249 91 gTIAENIRYGKP--------------DATDEEVEEAAKKANI-HDFIMSLPDGYDTlvgergsqLSGGQKQRIAIARALL 155
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 517055771 168 FGSKVIIMDEPTAALGvKESRRVLELILDVRARGLPIVLISH 209
Cdd:cd03249 156 RNPKILLLDEATSALD-AESEKLVQEALDRAMKGRTTIVIAH 196
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
22-209 |
7.57e-12 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 61.79 E-value: 7.57e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAIsgavtpdegvitlegrqvqfrspmeareAGIETVYQnlalspalsiadn 101
Cdd:cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRAL----------------------------AGLWPWGS------------- 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 102 mflGReIRKPGVLGSMFrmldrpameklarnkLSELGLMTIQNINQAV-----ETLSGGQRQGVAVARAAAFGSKVIIMD 176
Cdd:cd03223 56 ---GR-IGMPEGEDLLF---------------LPQRPYLPLGTLREQLiypwdDVLSGGEQQRLAFARLLLHKPKFVFLD 116
|
170 180 190
....*....|....*....|....*....|...
gi 517055771 177 EPTAALGVKESRRVLELIldvRARGLPIVLISH 209
Cdd:cd03223 117 EATSALDEESEDRLYQLL---KELGITVISVGH 146
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-223 |
7.67e-12 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 64.85 E-value: 7.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 2 AREPLLTARGLVKRY--GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAR 79
Cdd:PRK11160 334 ADQVSLTLNNVSFTYpdQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALR 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 80 EAgIETVYQNLALSPAlSIADNMFLGreirKPGVLGS-MFRMLDRPAMEKLARNK------LSELGlmtiqninqavETL 152
Cdd:PRK11160 414 QA-ISVVSQRVHLFSA-TLRDNLLLA----APNASDEaLIEVLQQVGLEKLLEDDkglnawLGEGG-----------RQL 476
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517055771 153 SGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVrARGLPIVLISHNMpHVFEVADRIHI 223
Cdd:PRK11160 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEH-AQNKTVLMITHRL-TGLEQFDRICV 545
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
20-209 |
1.09e-11 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 62.67 E-value: 1.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 20 TALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAV--TPDEGVITLEGRQvqfrspmeareagietVYQNLALSPALS 97
Cdd:COG2401 44 YVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALkgTPVAGCVDVPDNQ----------------FGREASLIDAIG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 98 IADNMFLgreirkpgvlgsmfrmldrpAMEKLARNKLSELGLMTiqninQAVETLSGGQRQGVAVARAAAFGSKVIIMDE 177
Cdd:COG2401 108 RKGDFKD--------------------AVELLNAVGLSDAVLWL-----RRFKELSTGQKFRFRLALLLAERPKLLVIDE 162
|
170 180 190
....*....|....*....|....*....|...
gi 517055771 178 PTAALGVKESRRVLELILD-VRARGLPIVLISH 209
Cdd:COG2401 163 FCSHLDRQTAKRVARNLQKlARRAGITLVVATH 195
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
36-225 |
1.33e-11 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 63.97 E-value: 1.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 36 AVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAREaGIETVYQNLALSpALSIADNMFLGREIRKPGVlg 115
Cdd:PRK10790 371 ALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQ-GVAMVQQDPVVL-ADTFLANVTLGRDISEEQV-- 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 116 smFRMLDRPAMEKLARnKLSElGLMTIqnINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELIL 195
Cdd:PRK10790 447 --WQALETVQLAELAR-SLPD-GLYTP--LGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA 520
|
170 180 190
....*....|....*....|....*....|.
gi 517055771 196 DVRARgLPIVLISHNMPHVFEvADRIHI-HR 225
Cdd:PRK10790 521 AVREH-TTLVVIAHRLSTIVE-ADTILVlHR 549
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
22-221 |
1.51e-11 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 62.25 E-value: 1.51e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEG---RQVQFRSpmeAREAgIETVYQNLALSPAlSI 98
Cdd:cd03253 17 LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGqdiREVTLDS---LRRA-IGVVPQDTVLFND-TI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 99 ADNMFLGR------EIRKPGVLGSMFRMLDRpaMEKLARNKLSELGLMtiqninqavetLSGGQRQGVAVARAAAFGSKV 172
Cdd:cd03253 92 GYNIRYGRpdatdeEVIEAAKAAQIHDKIMR--FPDGYDTIVGERGLK-----------LSGGEKQRVAIARAILKNPPI 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 517055771 173 IIMDEPTAALGVKESRRVLELILDVrARGLPIVLISHNMPHVFEvADRI 221
Cdd:cd03253 159 LLLDEATSALDTHTEREIQAALRDV-SKGRTTIVIAHRLSTIVN-ADKI 205
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
9-246 |
1.61e-11 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 64.23 E-value: 1.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 9 ARGLVK------RY--GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfrspmearE 80
Cdd:PLN03232 1231 SRGSIKfedvhlRYrpGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVA--------K 1302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 81 AGIETVYQNLAL---SPAL---SIADNMFLGREIRKPGvlgsMFRMLDRPAMEKLARNklSELGLMTiqNINQAVETLSG 154
Cdd:PLN03232 1303 FGLTDLRRVLSIipqSPVLfsgTVRFNIDPFSEHNDAD----LWEALERAHIKDVIDR--NPFGLDA--EVSEGGENFSV 1374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 155 GQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDvRARGLPIVLISHNMPHVFEvADRIHIHRLGRRLTVID 234
Cdd:PLN03232 1375 GQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE-EFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDS 1452
|
250
....*....|..
gi 517055771 235 PKEYTMSDAVAF 246
Cdd:PLN03232 1453 PQELLSRDTSAF 1464
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
12-223 |
2.41e-11 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 63.26 E-value: 2.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 12 LVKRYGrvtalDNAdFDLY------PGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITlegrqvqfrspmeaREAGIET 85
Cdd:COG1245 79 PVHRYG-----ENG-FRLYglpvpkKGKVTGILGPNGIGKSTALKILSGELKPNLGDYD--------------EEPSWDE 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 86 V---YQNLALSPALS-IADNmflgrEIR---KP-----------GVLGSMFRMLD-RPAMEKLArnklSELGLMTIqnIN 146
Cdd:COG1245 139 VlkrFRGTELQDYFKkLANG-----EIKvahKPqyvdlipkvfkGTVRELLEKVDeRGKLDELA----EKLGLENI--LD 207
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 147 QAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHI 223
Cdd:COG1245 208 RDISELSGGELQRVAIAAALLRDADFYFFDEPSSYLDIYQRLNVARLIRELAEEGKYVLVVEHDLAILDYLADYVHI 284
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-228 |
1.05e-10 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 60.04 E-value: 1.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 1 MAREPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISG--AVTPDEGVITLEGRQVQFRSPMEA 78
Cdd:CHL00131 2 NKNKPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGhpAYKILEGDILFKGESILDLEPEER 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 79 REAGIETVYQNLALSPALSIADNMFLgreirkpgVLGSMFRMLDRPAMEKLA-----RNKLSELGLMTI---QNINqavE 150
Cdd:CHL00131 82 AHLGIFLAFQYPIEIPGVSNADFLRL--------AYNSKRKFQGLPELDPLEfleiiNEKLKLVGMDPSflsRNVN---E 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 151 TLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHnMPHVFE--VADRIHIHRLGR 228
Cdd:CHL00131 151 GFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITH-YQRLLDyiKPDYVHVMQNGK 229
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
5-228 |
1.26e-10 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 61.26 E-value: 1.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 5 PLLTARGL--VKRYGRV--TALDNADFDLYPGEILAVIGDNGAGKS----SLIKAI-SGAVTPDEGVITLEGRQVQFRSP 75
Cdd:PRK15134 4 PLLAIENLsvAFRQQQTvrTVVNDVSLQIEAGETLALVGESGSGKSvtalSILRLLpSPPVVYPSGDIRFHGESLLHASE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 76 MEAREA---GIETVYQN--LALSPALSIADNMF----LGREIRKPGVLGSMFRMLDRPAMEKLARNklselglmtiqnIN 146
Cdd:PRK15134 84 QTLRGVrgnKIAMIFQEpmVSLNPLHTLEKQLYevlsLHRGMRREAARGEILNCLDRVGIRQAAKR------------LT 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 147 QAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRIHIHR 225
Cdd:PRK15134 152 DYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQElNMGLLFITHNLSIVRKLADRVAVMQ 231
|
...
gi 517055771 226 LGR 228
Cdd:PRK15134 232 NGR 234
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
22-221 |
1.30e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 61.29 E-value: 1.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTP-DEGVITLEGRqvqfrspmeareagietvyqnLALSPALS--- 97
Cdd:PLN03130 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPrSDASVVIRGT---------------------VAYVPQVSwif 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 98 ---IADNMFLGREIRKPgvlgSMFRMLDRPAMEK----LARNKLSELGLMTIqNInqavetlSGGQRQGVAVARAAAFGS 170
Cdd:PLN03130 692 natVRDNILFGSPFDPE----RYERAIDVTALQHdldlLPGGDLTEIGERGV-NI-------SGGQKQRVSMARAVYSNS 759
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 517055771 171 KVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLIS---HNMPHVfevaDRI 221
Cdd:PLN03130 760 DVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTnqlHFLSQV----DRI 809
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
21-221 |
2.13e-10 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 59.76 E-value: 2.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAI------SGAVTPDEgvITLEGRQVQFRSPMEARE---AGIETVYQN-- 89
Cdd:PRK11022 22 AVDRISYSVKQGEVVGIVGESGSGKSVSSLAImglidyPGRVMAEK--LEFNGQDLQRISEKERRNlvgAEVAMIFQDpm 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 90 LALSPALSIADNMFLGREIRKPGvlgsmfrmlDRPAMEKLARNKLSELGLMT-IQNINQAVETLSGGQRQGVAVARAAAF 168
Cdd:PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGG---------NKKTRRQRAIDLLNQVGIPDpASRLDVYPHQLSGGMSQRVMIAMAIAC 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 517055771 169 GSKVIIMDEPTAALGVKESRRVLELILDVRAR-GLPIVLISHNMPHVFEVADRI 221
Cdd:PRK11022 171 RPKLLIADEPTTALDVTIQAQIIELLLELQQKeNMALVLITHDLALVAEAAHKI 224
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
22-223 |
2.57e-10 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 59.49 E-value: 2.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRqVQFRSpmeareagietvyQNLALSPAlSIADN 101
Cdd:cd03291 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR-ISFSS-------------QFSWIMPG-TIKEN 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 102 MFLG---REIRKPGVLGSMFRMLDRPAMEKLARNKLSELGLmtiqninqaveTLSGGQRQGVAVARAAAFGSKVIIMDEP 178
Cdd:cd03291 118 IIFGvsyDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGI-----------TLSGGQRARISLARAVYKDADLYLLDSP 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 517055771 179 TAALGVKESRRVLELILDVRARGLPIVLISHNMPHVfEVADRIHI 223
Cdd:cd03291 187 FGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHL-KKADKILI 230
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
6-221 |
3.02e-10 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 59.07 E-value: 3.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 6 LLTARGL-VKRYGRVTaLDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPD--------EGVITLEGRQV-QFRSP 75
Cdd:PRK13547 1 MLTADHLhVARRHRAI-LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGgaprgarvTGDVTLNGEPLaAIDAP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 76 MEAREAGIetVYQNLALSPALSIADNMFLGR--EIRKPGVLGSMFRMLDRPAMEKLARNKLselglmtiqnINQAVETLS 153
Cdd:PRK13547 80 RLARLRAV--LPQAAQPAFAFSAREIVLLGRypHARRAGALTHRDGEIAWQALALAGATAL----------VGRDVTTLS 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517055771 154 GGQRQGVAVARA---------AAFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRI 221
Cdd:PRK13547 148 GGELARVQFARVlaqlwpphdAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLaRDWNLGVLAIVHDPNLAARHADRI 225
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
22-217 |
3.38e-10 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 60.34 E-value: 3.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGrQVQFrSPMEAReagietvYQNLALSpalsiaDN 101
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-SVAY-VPQQAW-------IQNDSLR------EN 718
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 102 MFLGREIRKPGVLGSMFRMLDRPAMEKLARNKLSELGLmtiQNINqavetLSGGQRQGVAVARAAAFGSKVIIMDEPTAA 181
Cdd:TIGR00957 719 ILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGE---KGVN-----LSGGQKQRVSLARAVYSNADIYLFDDPLSA 790
|
170 180 190
....*....|....*....|....*....|....*...
gi 517055771 182 LGVKESRRVLELILDVRA--RGLPIVLISHNMPHVFEV 217
Cdd:TIGR00957 791 VDAHVGKHIFEHVIGPEGvlKNKTRILVTHGISYLPQV 828
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
5-223 |
4.19e-10 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 59.05 E-value: 4.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 5 PLLTARGLVKRY----GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGaVTPDEGVITLEgrqvQFR------- 73
Cdd:PRK15093 2 PLLDIRNLTIEFktsdGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICG-VTKDNWRVTAD----RMRfddidll 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 74 --SPMEAREA---GIETVYQ--NLALSPALSIadnmflGREIRKP-------GVLGSMFRMLDRPAMEKLARnklseLGL 139
Cdd:PRK15093 77 rlSPRERRKLvghNVSMIFQepQSCLDPSERV------GRQLMQNipgwtykGRWWQRFGWRKRRAIELLHR-----VGI 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 140 MTIQNINQAVE-TLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEV 217
Cdd:PRK15093 146 KDHKDAMRSFPyELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLnQNNNTTILLISHDLQMLSQW 225
|
....*.
gi 517055771 218 ADRIHI 223
Cdd:PRK15093 226 ADKINV 231
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
12-223 |
4.70e-10 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 59.44 E-value: 4.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 12 LVKRYGrvtalDNAdFDLY------PGEILAVIGDNGAGKSSLIKAISGAVTPDEGvitlegrqvQFRSPMEARE----- 80
Cdd:PRK13409 79 PVHRYG-----VNG-FKLYglpipkEGKVTGILGPNGIGKTTAVKILSGELIPNLG---------DYEEEPSWDEvlkrf 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 81 AGIE--TVYQNLAlspalsiadnmflGREIR---KPG--------VLGSMFRMLDRPAMEKLARNKLSELGLMTIqnINQ 147
Cdd:PRK13409 144 RGTElqNYFKKLY-------------NGEIKvvhKPQyvdlipkvFKGKVRELLKKVDERGKLDEVVERLGLENI--LDR 208
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 148 AVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVrARGLPIVLISHNMPHVFEVADRIHI 223
Cdd:PRK13409 209 DISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIREL-AEGKYVLVVEHDLAVLDYLADNVHI 283
|
|
| NHLM_micro_ABC1 |
TIGR03796 |
NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein; This protein describes ... |
22-209 |
5.18e-10 |
|
NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein; This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274788 [Multi-domain] Cd Length: 710 Bit Score: 59.19 E-value: 5.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQF--RSPMEAREAGIE--------TVYQNLA 91
Cdd:TIGR03796 495 IENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEipREVLANSVAMVDqdiflfegTVRDNLT 574
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 92 L-SPALSIADnmfLGREIRKPGVLGSMFRMLDRPAMEklarnkLSELGlmtiqninqavETLSGGQRQGVAVARAAAFGS 170
Cdd:TIGR03796 575 LwDPTIPDAD---LVRACKDAAIHDVITSRPGGYDAE------LAEGG-----------ANLSGGQRQRLEIARALVRNP 634
|
170 180 190
....*....|....*....|....*....|....*....
gi 517055771 171 KVIIMDEPTAALGVKESRRVLELIldvRARGLPIVLISH 209
Cdd:TIGR03796 635 SILILDEATSALDPETEKIIDDNL---RRRGCTCIIVAH 670
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
13-223 |
5.45e-10 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 58.15 E-value: 5.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 13 VKRYGrvtalDNAdFDLY------PGEILAVIGDNGAGKSSLIKAISGAVTPDEGvitlegrqvQFRSPMEAREagIETV 86
Cdd:cd03236 7 VHRYG-----PNS-FKLHrlpvprEGQVLGLVGPNGIGKSTALKILAGKLKPNLG---------KFDDPPDWDE--ILDE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 YQNLALSPALSIADNMFLgREIRKP--------GVLGSMFRMLDRpameKLARNKLSEL-GLMTIQNI-NQAVETLSGGQ 156
Cdd:cd03236 70 FRGSELQNYFTKLLEGDV-KVIVKPqyvdlipkAVKGKVGELLKK----KDERGKLDELvDQLELRHVlDRNIDQLSGGE 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517055771 157 RQGVAVARAAAFGSKVIIMDEPTAALGVKE----SRRVLELILDVRArglpIVLISHNMPHVFEVADRIHI 223
Cdd:cd03236 145 LQRVAIAAALARDADFYFFDEPSSYLDIKQrlnaARLIRELAEDDNY----VLVVEHDLAVLDYLSDYIHC 211
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
22-221 |
6.58e-10 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 59.15 E-value: 6.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRqVQFRSpmeareagietvyQNLALSPAlSIADN 101
Cdd:TIGR01271 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR-ISFSP-------------QTSWIMPG-TIKDN 506
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 102 MFLG---REIRKPGVLGSMFRMLDRPAMEKLARNKLSELGLmtiqninqaveTLSGGQRQGVAVARAAAFGSKVIIMDEP 178
Cdd:TIGR01271 507 IIFGlsyDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGI-----------TLSGGQRARISLARAVYKDADLYLLDSP 575
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 517055771 179 TAALGVKESRRVLELILDVRARGLPIVLISHNMPHVfEVADRI 221
Cdd:TIGR01271 576 FTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHL-KKADKI 617
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
21-214 |
1.39e-09 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 57.98 E-value: 1.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQ--VQFRSPMEAREAGIEtvyqNLALSPALsi 98
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAalIAISSGLNGQLTGIE----NIELKGLM-- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 99 adnMFLGREIRK---PGVLgsmfrmldrpameklarnKLSELGlmtiQNINQAVETLSGGQRQGVAVARAAAFGSKVIIM 175
Cdd:PRK13545 113 ---MGLTKEKIKeiiPEII------------------EFADIG----KFIYQPVKTYSSGMKSRLGFAISVHINPDILVI 167
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 517055771 176 DEptaALGVKE---SRRVLELILDVRARGLPIVLISHNMPHV 214
Cdd:PRK13545 168 DE---ALSVGDqtfTKKCLDKMNEFKEQGKTIFFISHSLSQV 206
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
21-221 |
1.63e-09 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 56.75 E-value: 1.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 21 ALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITlegrqvqfrspmeaREAGIETVYQNLALSPALSIAD 100
Cdd:PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD--------------RNGEVSVIAISAGLSGQLTGIE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 101 NMflgreirkpgvlgsMFRML----DRPAMEKLARN--KLSELGlmtiQNINQAVETLSGGQRQGVAVARAAAFGSKVII 174
Cdd:PRK13546 105 NI--------------EFKMLcmgfKRKEIKAMTPKiiEFSELG----EFIYQPVKKYSSGMRAKLGFSINITVNPDILV 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 517055771 175 MDEptaALGVKE---SRRVLELILDVRARGLPIVLISHNMPHVFEVADRI 221
Cdd:PRK13546 167 IDE---ALSVGDqtfAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKI 213
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
22-221 |
2.32e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 57.68 E-value: 2.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPdegvitLEGRQVQFRSpmeareagietvyqNLALSPALS---- 97
Cdd:PLN03232 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH------AETSSVVIRG--------------SVAYVPQVSwifn 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 98 --IADNMFLGREIRKPgvlgSMFRMLDRPAMEK----LARNKLSELGLMTIQninqavetLSGGQRQGVAVARAAAFGSK 171
Cdd:PLN03232 693 atVRENILFGSDFESE----RYWRAIDVTALQHdldlLPGRDLTEIGERGVN--------ISGGQKQRVSMARAVYSNSD 760
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 517055771 172 VIIMDEPTAALGVKESRRVLELILDVRARGLPIVLIShNMPHVFEVADRI 221
Cdd:PLN03232 761 IYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVT-NQLHFLPLMDRI 809
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
22-221 |
2.55e-09 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 55.25 E-value: 2.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISG--AVTPDEGVITLEGRQvqfRSPMEAREAgIETVYQNLALSPALSIA 99
Cdd:cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGrrTGLGVSGEVLINGRP---LDKRSFRKI-IGYVPQDDILHPTLTVR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 100 DNMFLGREIRKpgvlgsmfrmldrpameklarnklselglmtiqninqavetLSGGQRQGVAVARAAAFGSKVIIMDEPT 179
Cdd:cd03213 101 ETLMFAAKLRG-----------------------------------------LSGGERKRVSIALELVSNPSLLFLDEPT 139
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 517055771 180 AALGVKESRRVLELILDVRARGLPIVLISHNMPH-VFEVADRI 221
Cdd:cd03213 140 SGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSeIFELFDKL 182
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
7-220 |
3.02e-09 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 57.12 E-value: 3.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISG--AVTPDEGVI--------------------- 63
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGmdQYEPTSGRIiyhvalcekcgyverpskvge 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 64 -------TLEGRQVQFRSPMEAREAGIE-----TVYQNLALSPALSIADNMFLG-REIRKPGVlGSMFRMLDRPAMEKLA 130
Cdd:TIGR03269 81 pcpvcggTLEPEEVDFWNLSDKLRRRIRkriaiMLQRTFALYGDDTVLDNVLEAlEEIGYEGK-EAVGRAVDLIEMVQLS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 131 rnklselglmtiQNINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILD-VRARGLPIVLISH 209
Cdd:TIGR03269 160 ------------HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEaVKASGISMVLTSH 227
|
250
....*....|..
gi 517055771 210 nMPHVFE-VADR 220
Cdd:TIGR03269 228 -WPEVIEdLSDK 238
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
26-221 |
4.08e-09 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 56.73 E-value: 4.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 26 DFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVqfrsPMEAREAgietvYQNLaLSPALSiadNMFLG 105
Cdd:COG4615 352 DLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPV----TADNREA-----YRQL-FSAVFS---DFHLF 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 106 REirkpgVLGsmfrmLDRPAMEKLARNKLSELGL---MTIQniNQAVET--LSGGQRQGVAVARAAAFGSKVIIMDE--- 177
Cdd:COG4615 419 DR-----LLG-----LDGEADPARARELLERLELdhkVSVE--DGRFSTtdLSQGQRKRLALLVALLEDRPILVFDEwaa 486
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 517055771 178 ---PtaalgvkESRRV--LELILDVRARGLPIVLISHNmPHVFEVADRI 221
Cdd:COG4615 487 dqdP-------EFRRVfyTELLPELKARGKTVIAISHD-DRYFDLADRV 527
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
15-234 |
5.78e-09 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 54.81 E-value: 5.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 15 RYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfrspmearEAGIETVYQNLAL-- 92
Cdd:cd03244 13 RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDIS--------KIGLHDLRSRISIip 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 93 -SPAL---SIADNM-FLGR----EIrkpgvlgsmFRMLDRPAMEKLARNKLSELGLMTIQNINQavetLSGGQRQGVAVA 163
Cdd:cd03244 85 qDPVLfsgTIRSNLdPFGEysdeEL---------WQALERVGLKEFVESLPGGLDTVVEEGGEN----LSVGQRQLLCLA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517055771 164 RAAAFGSKVIIMDEPTAALGVKESRRVLElildvrarglpivLISHNMPH--VFEVADRIHihrlgrrlTVID 234
Cdd:cd03244 152 RALLRKSKILVLDEATASVDPETDALIQK-------------TIREAFKDctVLTIAHRLD--------TIID 203
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
17-221 |
6.51e-09 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 55.68 E-value: 6.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 17 GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGaVTPDEGVIT-----LEGRQVQFRSPMEARE---AGIETVYQ 88
Cdd:COG4170 18 GRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICG-ITKDNWHVTadrfrWNGIDLLKLSPRERRKiigREIAMIFQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 89 NLA--LSPALSIADNmfLGREIRKPGVLGSMFRmldRPAMEKL-ARNKLSELGlmtIQNINQAVET----LSGGQRQGVA 161
Cdd:COG4170 97 EPSscLDPSAKIGDQ--LIEAIPSWTFKGKWWQ---RFKWRKKrAIELLHRVG---IKDHKDIMNSypheLTEGECQKVM 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517055771 162 VARAAAFGSKVIIMDEPTAALGVKESRRVLELILDV-RARGLPIVLISHNMPHVFEVADRI 221
Cdd:COG4170 169 IAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLnQLQGTSILLISHDLESISQWADTI 229
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
19-213 |
7.35e-09 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 54.64 E-value: 7.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 19 VTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTpdegviTLEGRqVQFRSPMEAREAGIETVYQNlALSPALSI 98
Cdd:cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ------TLEGK-VHWSNKNESEPSFEATRSRN-RYSVAYAA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 99 ADNMFLGREIRKPGVLGSMFR------MLD----RPAMEKLARNKLSELGLMTIQninqavetLSGGQRQGVAVARAAAF 168
Cdd:cd03290 86 QKPWLLNATVEENITFGSPFNkqrykaVTDacslQPDIDLLPFGDQTEIGERGIN--------LSGGQRQRICVARALYQ 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 517055771 169 GSKVIIMDEPTAALGVKESRRVL-ELILD-VRARGLPIVLISHN---MPH 213
Cdd:cd03290 158 NTNIVFLDDPFSALDIHLSDHLMqEGILKfLQDDKRTLVLVTHKlqyLPH 207
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
7-63 |
1.23e-08 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 54.90 E-value: 1.23e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 7 LTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVI 63
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
10-228 |
1.25e-08 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 54.74 E-value: 1.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 10 RGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAG--KSSLIKAISGavtPDEGvitleGRQVQFRSPMEAREAGIETVY 87
Cdd:NF000106 17 RGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*G---PDAG-----RRPWRF*TWCANRRALRRTIG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 88 QNlalSPALSIADNMFLGREirkpgVLGSMFRMLDRPAMEKLAR-NKLSELGLMTiQNINQAVETLSGGQRQGVAVARAA 166
Cdd:NF000106 89 *H---RPVR*GRRESFSGRE-----NLYMIGR*LDLSRKDARARaDELLERFSLT-EAAGRAAAKYSGGMRRRLDLAASM 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517055771 167 AFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:NF000106 160 IGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGR 221
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
1-182 |
1.76e-08 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 53.31 E-value: 1.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 1 MAREPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfrspMEARE 80
Cdd:PRK13543 6 HTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTAT----RGDRS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 81 AGIETVYQNLALSPALSIADNM-FL-GREIRKPgvlgsmfrmldrpamEKLARNKLSELGLMTIQniNQAVETLSGGQRQ 158
Cdd:PRK13543 82 RFMAYLGHLPGLKADLSTLENLhFLcGLHGRRA---------------KQMPGSALAIVGLAGYE--DTLVRQLSAGQKK 144
|
170 180
....*....|....*....|....
gi 517055771 159 GVAVARAAAFGSKVIIMDEPTAAL 182
Cdd:PRK13543 145 RLALARLWLSPAPLWLLDEPYANL 168
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
10-200 |
1.83e-08 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 54.75 E-value: 1.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 10 RGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEG---RQVQFRSPMEAREAgietv 86
Cdd:NF033858 5 EGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGgdmADARHRRAVCPRIA----- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 87 Y--QNLA--LSPALSIADNM-FLG---------REIRKPGVLGS--MFRMLDRPAmeklarnklselglmtiqninqavE 150
Cdd:NF033858 80 YmpQGLGknLYPTLSVFENLdFFGrlfgqdaaeRRRRIDELLRAtgLAPFADRPA------------------------G 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 517055771 151 TLSGGQRQGVAVARAAAFGSKVIIMDEPTAalGVKE-SRRVL-ELILDVRAR 200
Cdd:NF033858 136 KLSGGMKQKLGLCCALIHDPDLLILDEPTT--GVDPlSRRQFwELIDRIRAE 185
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
26-245 |
2.72e-08 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 54.21 E-value: 2.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 26 DFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSPMEAReAGIETVYQNLALSPALsiadnmfLG 105
Cdd:PRK10522 343 NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYR-KLFSAVFTDFHLFDQL-------LG 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 106 REIRKPGVLgSMFRMLDRPAMeklaRNKLSELGLmTIQNINqavetLSGGQRQGVAVARAAAFGSKVIIMDEpTAALGVK 185
Cdd:PRK10522 415 PEGKPANPA-LVEKWLERLKM----AHKLELEDG-RISNLK-----LSKGQKKRLALLLALAEERDILLLDE-WAADQDP 482
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517055771 186 ESRRV--LELILDVRARGLPIVLISHNmPHVFEVADRIHIHRLGrRLTVI--DPKEYTMSDAVA 245
Cdd:PRK10522 483 HFRREfyQVLLPLLQEMGKTIFAISHD-DHYFIHADRLLEMRNG-QLSELtgEERDAASRDAVA 544
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
22-209 |
3.63e-08 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 53.66 E-value: 3.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLegrqvqfrspmeareagietvyqnlalsPALsiADN 101
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIAR----------------------------PAG--ARV 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 102 MFLGREIRKPgvLGSMFRMLDRPAMEK----------LARNKLSELG--LMTIQNINQaveTLSGGQRQGVAVARAAAFG 169
Cdd:COG4178 429 LFLPQRPYLP--LGTLREALLYPATAEafsdaelreaLEAVGLGHLAerLDEEADWDQ---VLSLGEQQRLAFARLLLHK 503
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 517055771 170 SKVIIMDEPTAALGVKESRRVLELILDvRARGLPIVLISH 209
Cdd:COG4178 504 PDWLFLDEATSALDEENEAALYQLLRE-ELPGTTVISVGH 542
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
27-246 |
5.06e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 53.59 E-value: 5.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 27 FDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVqfrspmeaREAGIETVYQNLALSPALSIadnMFLGr 106
Cdd:PLN03130 1260 FEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDI--------SKFGLMDLRKVLGIIPQAPV---LFSG- 1327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 107 EIRKPgvLGSMFRMLDRPAMEKLARNKLSE------LGLMTiqNINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTA 180
Cdd:PLN03130 1328 TVRFN--LDPFNEHNDADLWESLERAHLKDvirrnsLGLDA--EVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATA 1403
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517055771 181 ALGVKESRRVLELILDvRARGLPIVLISHNMPHVFEvADRIHIHRLGRRLTVIDPKEYTMSDAVAF 246
Cdd:PLN03130 1404 AVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSNEGSAF 1467
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
134-221 |
7.80e-08 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 52.71 E-value: 7.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 134 LSELGLMTIQnINQAVETLSGGQRQGVAVAR---AAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHN 210
Cdd:TIGR00630 813 LCDVGLGYIR-LGQPATTLSGGEAQRIKLAKelsKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHN 891
|
90
....*....|.
gi 517055771 211 MpHVFEVADRI 221
Cdd:TIGR00630 892 L-DVIKTADYI 901
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
134-221 |
9.74e-08 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 51.46 E-value: 9.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 134 LSELGLMTIQnINQAVETLSGGQRQGVAVARAAAFGSK---VIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHN 210
Cdd:cd03271 153 LCDVGLGYIK-LGQPATTLSGGEAQRIKLAKELSKRSTgktLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHN 231
|
90
....*....|.
gi 517055771 211 MpHVFEVADRI 221
Cdd:cd03271 232 L-DVIKCADWI 241
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
4-92 |
1.04e-07 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 52.43 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRSpMEAREA-- 81
Cdd:NF033858 264 EPAIEARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDAGD-IATRRRvg 342
|
90 100
....*....|....*....|
gi 517055771 82 ---------GIETVYQNLAL 92
Cdd:NF033858 343 ymsqafslyGELTVRQNLEL 362
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
22-228 |
1.37e-07 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 51.71 E-value: 1.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISG-----AVTpdeGVITLEGRQVQFRSPMEAREAGIETVYQN---LALS 93
Cdd:NF040905 276 VDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFGrsygrNIS---GTVFKDGKEVDVSTVSDAIDAGLAYVTEDrkgYGLN 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 94 PALSIADNMFLG--REIRKPGVLgsmfrmlDRPAMEKLA---RNKlselglMTIQ--NINQAVETLSGGQRQGVAVARAA 166
Cdd:NF040905 353 LIDDIKRNITLAnlGKVSRRGVI-------DENEEIKVAeeyRKK------MNIKtpSVFQKVGNLSGGNQQKVVLSKWL 419
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517055771 167 AFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGR 228
Cdd:NF040905 420 FTDPDVLILDEPTRGIDVGAKYEIYTIINELAAEGKGVIVISSELPELLGMCDRIYVMNEGR 481
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
19-221 |
2.54e-07 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 51.26 E-value: 2.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 19 VTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAV----TPDEGVITLEGrqvqfRSP--MEAREAGiETVY--QNL 90
Cdd:TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTdgfhIGVEGVITYDG-----ITPeeIKKHYRG-DVVYnaETD 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 91 ALSPALSIADNMFLGREIRKPGVLGSMFRMLDRpaMEKLARNKLSELGLMTIQNI---NQAVETLSGGQRQGVAVARAAA 167
Cdd:TIGR00956 148 VHFPHLTVGETLDFAARCKTPQNRPDGVSREEY--AKHIADVYMATYGLSHTRNTkvgNDFVRGVSGGERKRVSIAEASL 225
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 517055771 168 FGSKVIIMDEPTAALgvkESRRVLELI--LDVRARGL---PIVLISHNMPHVFEVADRI 221
Cdd:TIGR00956 226 GGAKIQCWDNATRGL---DSATALEFIraLKTSANILdttPLVAIYQCSQDAYELFDKV 281
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
27-218 |
4.97e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 48.71 E-value: 4.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 27 FDL----YPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfrspmEAREAGIETVYQNLALSPALSIADNM 102
Cdd:PRK13541 17 FDLsitfLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNIN-----NIAKPYCTYIGHNLGLKLEMTVFENL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 103 FLGREIRKPGVLgsmfrmldRPAmeKLARNKLSELglmtiqnINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAAL 182
Cdd:PRK13541 92 KFWSEIYNSAET--------LYA--AIHYFKLHDL-------LDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNL 154
|
170 180 190
....*....|....*....|....*....|....*.
gi 517055771 183 GvKESRRVLELILDVRARGLPIVLISHNMPHVFEVA 218
Cdd:PRK13541 155 S-KENRDLLNNLIVMKANSGGIVLLSSHLESSIKSA 189
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
18-221 |
5.43e-07 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 49.18 E-value: 5.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 18 RVTALDNADFDLYPGEILAVIGDNGAGKSSL----IKAisgavtpdEG----VITLEGRQVQFRSPMEAREA-GIEtvyq 88
Cdd:cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLafdtIYA--------EGqrryVESLSAYARQFLGQMDKPDVdSIE---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 89 nlALSPALSIaDNMFLGREIRKpgVLGSM------FRMLdrpamekLAR-------NKLSELGLMTIqNINQAVETLSGG 155
Cdd:cd03270 75 --GLSPAIAI-DQKTTSRNPRS--TVGTVteiydyLRLL-------FARvgirerlGFLVDVGLGYL-TLSRSAPTLSGG 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 156 QRQGVAVARaaAFGSKVI----IMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNmPHVFEVADRI 221
Cdd:cd03270 142 EAQRIRLAT--QIGSGLTgvlyVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHD-EDTIRAADHV 208
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
15-223 |
7.13e-07 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 49.78 E-value: 7.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 15 RYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGR----QVQFRSP---MEAREAGIETVY 87
Cdd:PRK10636 10 RRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNwqlaWVNQETPalpQPALEYVIDGDR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 88 QNLALSPALSIADNMFLGREIrkpGVLGSMFRMLDRPAMEKLARNKLSELGLMTIQnINQAVETLSGGQRQGVAVARAAA 167
Cdd:PRK10636 90 EYRQLEAQLHDANERNDGHAI---ATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQ-LERPVSDFSGGWRMRLNLAQALI 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 168 FGSKVIIMDEPTAALGVKEsrrVLELILDVRARGLPIVLISHNMPHVFEVADRI-HI 223
Cdd:PRK10636 166 CRSDLLLLDEPTNHLDLDA---VIWLEKWLKSYQGTLILISHDRDFLDPIVDKIiHI 219
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
5-65 |
7.74e-07 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 49.78 E-value: 7.74e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517055771 5 PLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITL 65
Cdd:PRK10636 311 PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL 371
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
20-181 |
1.34e-06 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 48.94 E-value: 1.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 20 TALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQV-QFRspMEAREAGIETVYQnlalSPAL-- 96
Cdd:PRK10789 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLtKLQ--LDSWRSRLAVVSQ----TPFLfs 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 97 -SIADNMFLGR------EIRKPGVLGSMFRMLDRpaMEKLARNKLSELGLMtiqninqavetLSGGQRQGVAVARAAAFG 169
Cdd:PRK10789 403 dTVANNIALGRpdatqqEIEHVARLASVHDDILR--LPQGYDTEVGERGVM-----------LSGGQKQRISIARALLLN 469
|
170
....*....|..
gi 517055771 170 SKVIIMDEPTAA 181
Cdd:PRK10789 470 AEILILDDALSA 481
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
137-221 |
1.92e-06 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 46.93 E-value: 1.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 137 LGLMTIqniNQAVETLSGGQRQGVAVAR--AAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNmPHV 214
Cdd:cd03238 76 LGYLTL---GQKLSTLSGGELQRVKLASelFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN-LDV 151
|
....*..
gi 517055771 215 FEVADRI 221
Cdd:cd03238 152 LSSADWI 158
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
22-179 |
2.96e-06 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 48.01 E-value: 2.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGvitlegrqvqfrspmEAREA-GIETVY--QNLALSPALSI 98
Cdd:TIGR03719 21 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNG---------------EARPQpGIKVGYlpQEPQLDPTKTV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 99 ADNMFLGreirkpgvLGSMFRMLDR------------PAMEKLAR------NKLSELGLMTIQN-INQA----------- 148
Cdd:TIGR03719 86 RENVEEG--------VAEIKDALDRfneisakyaepdADFDKLAAeqaelqEIIDAADAWDLDSqLEIAmdalrcppwda 157
|
170 180 190
....*....|....*....|....*....|..
gi 517055771 149 -VETLSGGQRQGVAVARAAAFGSKVIIMDEPT 179
Cdd:TIGR03719 158 dVTKLSGGERRRVALCRLLLSKPDMLLLDEPT 189
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
35-182 |
3.88e-06 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 47.55 E-value: 3.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 35 LAVIGDNGAGKSSLIKAISGAVTPDEGVItlegrqvqFRSPmEAREAgietVYQNLALSpALSIADNMFLGREIRKPGVL 114
Cdd:PLN03073 538 IAMVGPNGIGKSTILKLISGELQPSSGTV--------FRSA-KVRMA----VFSQHHVD-GLDLSSNPLLYMMRCFPGVP 603
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517055771 115 gsmfrmldrpamEKLARNKLSELGLmTIQNINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAAL 182
Cdd:PLN03073 604 ------------EQKLRAHLGSFGV-TGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHL 658
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
17-222 |
6.40e-06 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 45.04 E-value: 6.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 17 GRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTpdegvitleGRQVQFRSPMEAREAGIETvyqnlalspal 96
Cdd:cd03227 6 RFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALG---------GAQSATRRRSGVKAGCIVA----------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 97 siadnmflgreirkpgvlgsmfrmldrpameklarnkLSELGLMTIqninqaVETLSGGQRQGVAVARAAAFGSK----V 172
Cdd:cd03227 66 -------------------------------------AVSAELIFT------RLQLSGGEKELSALALILALASLkprpL 102
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 517055771 173 IIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNmPHVFEVADRIH 222
Cdd:cd03227 103 YILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHL-PELAELADKLI 151
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
151-227 |
1.11e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 46.36 E-value: 1.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 151 TLSGGQRQGVAVARAAAFGSK---VIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMpHVFEVADriHIHRLG 227
Cdd:PRK00635 809 SLSGGEIQRLKLAYELLAPSKkptLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM-HVVKVAD--YVLELG 885
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
23-222 |
1.13e-05 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 44.91 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 23 DNADFDLYPGeILAVIGDNGAGKSSLIKAISGAVTPDegviTLEGRQVQFRSPMEARE----AGIETVYQN-----LALS 93
Cdd:cd03240 14 ERSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGE----LPPNSKGGAHDPKLIREgevrAQVKLAFENangkkYTIT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 94 PALSIADNMFLGR--EIRKPgvlgsMFRMLDRpameklarnklselglmtiqninqavetLSGGQRQGVAV----ARAAA 167
Cdd:cd03240 89 RSLAILENVIFCHqgESNWP-----LLDMRGR----------------------------CSGGEKVLASLiirlALAET 135
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517055771 168 FGSK--VIIMDEPTAALGVKESRRVLELILDVRARGL--PIVLISHN------MPHVFEVADRIH 222
Cdd:cd03240 136 FGSNcgILALDEPTTNLDEENIEESLAEIIEERKSQKnfQLIVITHDeelvdaADHIYRVEKDGR 200
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
144-221 |
1.60e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 45.79 E-value: 1.60e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517055771 144 NINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARG-LPIVLISHNMPHVfEVADRI 221
Cdd:PTZ00265 1351 NVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKAdKTIITIAHRIASI-KRSDKI 1428
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
131-221 |
2.10e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 45.59 E-value: 2.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 131 RNKLS---ELGLMTIqNINQAVETLSGGQRQGVAVAR--AAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIV 205
Cdd:PRK00635 454 KSRLSiliDLGLPYL-TPERALATLSGGEQERTALAKhlGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVL 532
|
90
....*....|....*.
gi 517055771 206 LISHNmPHVFEVADRI 221
Cdd:PRK00635 533 LVEHD-EQMISLADRI 547
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
26-244 |
2.85e-05 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 45.01 E-value: 2.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 26 DFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGvitleGRQVQFRSP----MEAREAGIETVYQ---NLALSPALSi 98
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSG-----ERQSQFSHItrlsFEQLQKLVSDEWQrnnTDMLSPGED- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 99 aDNMFLGREIRKPGVlgsmfrmLDRPAMEKLArnklSELGLMTIqnINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEP 178
Cdd:PRK10938 97 -DTGRTTAEIIQDEV-------KDPARCEQLA----QQFGITAL--LDRRFKYLSTGETRKTLLCQALMSEPDLLILDEP 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517055771 179 TAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIhrLG-RRLTVIDPKEYTMSDAV 244
Cdd:PRK10938 163 FDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGV--LAdCTLAETGEREEILQQAL 227
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
14-182 |
5.80e-05 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 43.02 E-value: 5.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 14 KRYGRVTA--LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVitlEGrqvqfrspmeareagiETVYQNLA 91
Cdd:cd03233 13 TGKGRSKIpiLKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV---EG----------------DIHYNGIP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 92 LSPALSI--ADNMFLGREIRKPGVLgSMFRMLDRPAmekLARNklselglmtiqniNQAVETLSGGQRQGVAVARAAAFG 169
Cdd:cd03233 74 YKEFAEKypGEIIYVSEEDVHFPTL-TVRETLDFAL---RCKG-------------NEFVRGISGGERKRVSIAEALVSR 136
|
170
....*....|...
gi 517055771 170 SKVIIMDEPTAAL 182
Cdd:cd03233 137 ASVLCWDNSTRGL 149
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
31-230 |
7.57e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 41.98 E-value: 7.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 31 PGEILAVIGDNGAGKSSLIKAISGAVTPDEGVItlegrqvqfrspmeareagietvyqnLALSPALSIADNMFLGREIRK 110
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGV--------------------------IYIDGEDILEEVLDQLLLIIV 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 111 PGVLGSmfrmldrpameklarnklselglmtiqninqavetLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRV 190
Cdd:smart00382 55 GGKKAS-----------------------------------GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALL 99
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 517055771 191 LELILDV------RARGLPIVLISHNMPHVFEVADRihiHRLGRRL 230
Cdd:smart00382 100 LLLEELRlllllkSEKNLTVILTTNDEKDLGPALLR---RRFDRRI 142
|
|
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
26-73 |
1.78e-04 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 41.91 E-value: 1.78e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 517055771 26 DFDLYPGeILAVIGDNGAGKSSLIKAISGAVTPDE-GVITLEGRQVQFR 73
Cdd:COG3950 20 DFDNPPR-LTVLVGENGSGKTTLLEAIALALSGLLsRLDDVKFRKLLIR 67
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
144-221 |
2.10e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 42.31 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 144 NINQAVETLSGGQRQGVAVarAAAFGSKVI----IMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNmPHVFEVAD 219
Cdd:TIGR00630 481 SLSRAAGTLSGGEAQRIRL--ATQIGSGLTgvlyVLDEPSIGLHQRDNRRLINTLKRLRDLGNTLIVVEHD-EDTIRAAD 557
|
..
gi 517055771 220 RI 221
Cdd:TIGR00630 558 YV 559
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
22-182 |
2.86e-04 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 42.02 E-value: 2.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTpdEGVITLEGRQVQFRSPMEAREAGIETVYQNLALSPALSIADN 101
Cdd:TIGR00956 779 LNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVT--TGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRES 856
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 102 MFLGREIRKPGVLG---------SMFRMLDrpaMEKLARNKLSELGlmtiqninqavETLSGGQRQGVAVARAAAFGSKV 172
Cdd:TIGR00956 857 LRFSAYLRQPKSVSksekmeyveEVIKLLE---MESYADAVVGVPG-----------EGLNVEQRKRLTIGVELVAKPKL 922
|
170
....*....|.
gi 517055771 173 II-MDEPTAAL 182
Cdd:TIGR00956 923 LLfLDEPTSGL 933
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
31-216 |
3.20e-04 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 41.05 E-value: 3.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 31 PGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfRSPMEAREAGIETVYQNLALSPAlSIADNMflgreirK 110
Cdd:cd03288 46 PGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDIS-KLPLHTLRSRLSIILQDPILFSG-SIRFNL-------D 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 111 PGVLGSMFRMLDRPAMEKLaRNKLSEL--GLMTIqnINQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKeSR 188
Cdd:cd03288 117 PECKCTDDRLWEALEIAQL-KNMVKSLpgGLDAV--VTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMA-TE 192
|
170 180
....*....|....*....|....*...
gi 517055771 189 RVLELILDVRARGLPIVLISHNMPHVFE 216
Cdd:cd03288 193 NILQKVVMTAFADRTVVTIAHRVSTILD 220
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
22-209 |
4.13e-04 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 40.54 E-value: 4.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 22 LDNADFDLYPGEILAVIGDNGAGKSSLIKAISGA--VTPDEGVITLEGRQVQFRSPMEAREAGIETVYQNLALSPALSia 99
Cdd:PRK09580 17 LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRedYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVS-- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 100 DNMFLG------REIRKPgvlgsmfRMLDRPAMEKLARNKLSELGlMTIQNINQAVET-LSGGQRQGVAVARAAAFGSKV 172
Cdd:PRK09580 95 NQFFLQtalnavRSYRGQ-------EPLDRFDFQDLMEEKIALLK-MPEDLLTRSVNVgFSGGEKKRNDILQMAVLEPEL 166
|
170 180 190
....*....|....*....|....*....|....*..
gi 517055771 173 IIMDEPTAALGVKESRRVLELILDVRARGLPIVLISH 209
Cdd:PRK09580 167 CILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH 203
|
|
| ABC_sbcCD |
cd03279 |
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are ... |
16-238 |
4.23e-04 |
|
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Pssm-ID: 213246 [Multi-domain] Cd Length: 213 Bit Score: 40.33 E-value: 4.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 16 YGRVTALDNADFDLYPgeILAVIGDNGAGKSSLIKAISGAVTpdeGVITLEGRQVQFRSPMEAREAgietvyqnlALSPA 95
Cdd:cd03279 14 FREEQVIDFTGLDNNG--LFLICGPTGAGKSTILDAITYALY---GKTPRYGRQENLRSVFAPGED---------TAEVS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 96 LSIADNMFLGREIRKPGVLGSMFRmldRPAMekLARNKLSELglmtiqnINQAVETLSGGQRQGVAVARAAAFGSKV--- 172
Cdd:cd03279 80 FTFQLGGKKYRVERSRGLDYDQFT---RIVL--LPQGEFDRF-------LARPVSTLSGGETFLASLSLALALSEVLqnr 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517055771 173 -------IIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHnMPHVFEvadrihihRLGRRLtVIDPKEY 238
Cdd:cd03279 148 ggarleaLFIDEGFGTLDPEALEAVATALELIRTENRMVGVISH-VEELKE--------RIPQRL-EVIKTPG 210
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
12-96 |
4.84e-04 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 39.86 E-value: 4.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 12 LVKRYGRVTALDNADfDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQFRsPMEAREAGIEtvYQNLA 91
Cdd:cd03222 6 CVKRYGVFFLLVELG-VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYK-PQYIDLSGGE--LQRVA 81
|
....*
gi 517055771 92 LSPAL 96
Cdd:cd03222 82 IAAAL 86
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
152-211 |
7.61e-04 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 40.78 E-value: 7.61e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517055771 152 LSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPI-VLISHNM 211
Cdd:PTZ00265 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRItIIIAHRL 640
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
4-178 |
8.48e-04 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 40.38 E-value: 8.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 4 EPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISG----AVTPDegvITLEGRQvqfrspmeaR 79
Cdd:PRK10938 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGdhpqGYSND---LTLFGRR---------R 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 80 EAGiETVYQ----------NLALSPALSI-ADNMFLGreirkpGVLGS--MFRML-DRpaMEKLARNKLSELGlMTIQNI 145
Cdd:PRK10938 326 GSG-ETIWDikkhigyvssSLHLDYRVSTsVRNVILS------GFFDSigIYQAVsDR--QQKLAQQWLDILG-IDKRTA 395
|
170 180 190
....*....|....*....|....*....|...
gi 517055771 146 NQAVETLSGGQRQGVAVARAAAFGSKVIIMDEP 178
Cdd:PRK10938 396 DAPFHSLSWGQQRLALIVRALVKHPTLLILDEP 428
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
152-221 |
9.69e-04 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 40.53 E-value: 9.69e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 152 LSGGQRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMpHVFEVADRI 221
Cdd:PTZ00243 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV-HVVPRADYV 851
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
31-227 |
9.97e-04 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 40.21 E-value: 9.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 31 PGEILAVIGDNGAGKSSLIKAISGAVTPD--EGVITLEG---RQVQFrspmeAREAGIetVYQNLALSPALSIADNMFLG 105
Cdd:PLN03140 905 PGVLTALMGVSGAGKTTLMDVLAGRKTGGyiEGDIRISGfpkKQETF-----ARISGY--CEQNDIHSPQVTVRESLIYS 977
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 106 REIRKPGVLGSMFRM--LDRpAMEKLARNKLSE--LGLmtiqninQAVETLSGGQRQGVAVARAAAFGSKVIIMDEPTAA 181
Cdd:PLN03140 978 AFLRLPKEVSKEEKMmfVDE-VMELVELDNLKDaiVGL-------PGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1049
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 517055771 182 LGVKESRRVLELILDVRARGLPIVLISHNmPH--VFEVADRIHIHRLG 227
Cdd:PLN03140 1050 LDARAAAIVMRTVRNTVDTGRTVVCTIHQ-PSidIFEAFDELLLMKRG 1096
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
22-57 |
1.16e-03 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 39.02 E-value: 1.16e-03
10 20 30
....*....|....*....|....*....|....*.
gi 517055771 22 LDNADFDLYPGeILAVIGDNGAGKSSLIKAISGAVT 57
Cdd:pfam13476 9 FRDQTIDFSKG-LTLITGPNGSGKTTILDAIKLALY 43
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
32-182 |
1.23e-03 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 39.93 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 32 GEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGRQVQfrspmearEAGIETVYQNLALSPalsiadnmflgreiRKP 111
Cdd:TIGR00957 1312 GEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIA--------KIGLHDLRFKITIIP--------------QDP 1369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 112 GVLGSMFRMLDRPAMEKLARNKLSELGLMTIQNINQAV------------ETLSGGQRQGVAVARAAAFGSKVIIMDEPT 179
Cdd:TIGR00957 1370 VLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALpdkldhecaeggENLSVGQRQLVCLARALLRKTKILVLDEAT 1449
|
...
gi 517055771 180 AAL 182
Cdd:TIGR00957 1450 AAV 1452
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
1-179 |
2.12e-03 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 38.95 E-value: 2.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 1 MAREPLLTARGLVKRYG--RVTaLDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGvitlegrqvqfrspmEA 78
Cdd:PRK11819 1 MMAQYIYTMNRVSKVVPpkKQI-LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEG---------------EA 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055771 79 REA-GIETVY--QNLALSPALSIadnmflgREIRKPGVlGSMFRMLDR------------PAMEKLA------RNKLSEL 137
Cdd:PRK11819 65 RPApGIKVGYlpQEPQLDPEKTV-------RENVEEGV-AEVKAALDRfneiyaayaepdADFDALAaeqgelQEIIDAA 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 517055771 138 GLMTIQN-INQA------------VETLSGGQRQGVAVARAAAFGSKVIIMDEPT 179
Cdd:PRK11819 137 DAWDLDSqLEIAmdalrcppwdakVTKLSGGERRRVALCRLLLEKPDMLLLDEPT 191
|
|
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
26-52 |
5.90e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 37.60 E-value: 5.90e-03
10 20
....*....|....*....|....*..
gi 517055771 26 DFDLYPGEILAVIGDNGAGKSSLIKAI 52
Cdd:COG4637 15 DLELPLGPLTVLIGANGSGKSNLLDAL 41
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
34-53 |
6.05e-03 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 37.37 E-value: 6.05e-03
|
| |
