|
Name |
Accession |
Description |
Interval |
E-value |
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
62-365 |
4.19e-172 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 481.06 E-value: 4.19e-172
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 62 FFSRMKEGLTKTRKNFADGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIIANLTERTARGDLIYSHSLYKALQE 141
Cdd:COG0552 1 FFERLKEGLSKTRSGLGEKLKSLFSGKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 142 ELVALLAPRVKPLHIDSNKnPYVILVVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVAVV 221
Cdd:COG0552 81 ELLEILDPVDKPLAIEEKK-PFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 222 AQGHGADSASVIFDAFESARAKGMDVLIADTAGRLHNKGHLMQELTKVKRVMQKIDATAPHEVMLVVDAGTGQNAINQVE 301
Cdd:COG0552 160 AQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQAK 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 514970707 302 MFDEAVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETD 365
Cdd:COG0552 240 VFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFGEE 303
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
55-366 |
9.04e-171 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 478.05 E-value: 9.04e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 55 EEKSKGGFFSRMKEGLTKTRKNFADGMVNILiGGKEIDDELLEEVEEQLLVADIGVDATKTIIANLTERTARGDLIYSHS 134
Cdd:PRK10416 9 KKEKKEGWFERLKKGLSKTRENFGEGINGLF-AKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 135 LYKALQEELVALLAPRVKPLHIDSNKnPYVILVVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGE 214
Cdd:PRK10416 88 LKELLKEELAEILEPVEKPLNIEEKK-PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGE 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 215 RNDVAVVAQGHGADSASVIFDAFESARAKGMDVLIADTAGRLHNKGHLMQELTKVKRVMQKIDATAPHEVMLVVDAGTGQ 294
Cdd:PRK10416 167 RVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ 246
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 514970707 295 NAINQVEMFDEAVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETDK 366
Cdd:PRK10416 247 NALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGGED 318
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
106-362 |
2.62e-117 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 341.16 E-value: 2.62e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 106 ADIGVDATKTIIANLTERTARGDLIYSHSLYKALQEELVALLAP----RVKPLHIDSNKNPYVILVVGVNGVGKTTTIGK 181
Cdd:TIGR00064 17 SDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEdllkNTDLELIVEENKPNVILFVGVNGVGKTTTIAK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 182 LAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVAVVAQGHGADSASVIFDAFESARAKGMDVLIADTAGRLHNKGH 261
Cdd:TIGR00064 97 LANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQNKVN 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 262 LMQELTKVKRVMQKIDATAPHEVMLVVDAGTGQNAINQVEMFDEAVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFIG 341
Cdd:TIGR00064 177 LMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILSIAYELKLPIKFIG 256
|
250 260
....*....|....*....|.
gi 514970707 342 VGEKIDDLRPFSAKSFVAALF 362
Cdd:TIGR00064 257 VGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
163-361 |
1.19e-110 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 321.06 E-value: 1.19e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 163 YVILVVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVAVVAQGHGADSASVIFDAFESARA 242
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 243 KGMDVLIADTAGRLHNKGHLMQELTKVKRVMQKIDATAPHEVMLVVDAGTGQNAINQVEMFDEAVGLTGLTITKLDGTAK 322
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 514970707 323 GGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 361
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
162-363 |
1.02e-102 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 300.87 E-value: 1.02e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 162 PYVILVVGVNGVGKTTTIGKLAKRLQGEG-KKVMLAAGDTFRAAATEQLQIWGERNDVAVVAQGHGADSASVIFDAFESA 240
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 241 RAKGMDVLIADTAGRLHNKGHLMQELTKVKRVMQkidataPHEVMLVVDAGTGQNAINQVEMFDEAVGLTGLTITKLDGT 320
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIK------PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 514970707 321 AKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFE 363
Cdd:smart00962 155 AKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
164-361 |
1.68e-96 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 285.20 E-value: 1.68e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 164 VILVVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVAVVAQGHGADSASVIFDAFESARAK 243
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKAE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 244 GMDVLIADTAGRLHNKGHLMQELTKVKRVmqkidaTAPHEVMLVVDAGTGQNAINQVEMFDEAVGLTGLTITKLDGTAKG 323
Cdd:pfam00448 82 NYDVVLVDTAGRLQNDKNLMDELKKIKRV------VAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKG 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 514970707 324 GVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 361
Cdd:pfam00448 156 GAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
163-361 |
9.51e-86 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 257.69 E-value: 9.51e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 163 YVILVVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVAVVAQGHGADSASVIFDAFESARA 242
Cdd:cd03115 1 NVILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 243 KGMDVLIADTAGRLHNKGHLMQELTKVKRVmqkidaTAPHEVMLVVDAGTGQNAINQVEMFDEAVGLTGLTITKLDGTAK 322
Cdd:cd03115 81 EGYDVLLVDTAGRLQKDEPLMEELKKVKEV------ESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 514970707 323 GGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 361
Cdd:cd03115 155 GGAALSIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
106-358 |
1.64e-80 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 252.25 E-value: 1.64e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 106 ADIGVDATKTIIANLTERtARG-DLIYSHS----LYKALQEELVALLAPRVKPLHIDSNKnPYVILVVGVNGVGKTTTIG 180
Cdd:COG0541 41 ADVNLKVVKDFIERVKER-ALGeEVLKSLTpgqqVIKIVHDELVELLGGENEELNLAKKP-PTVIMMVGLQGSGKTTTAA 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 181 KLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVAVVAQGHGADSASVIFDAFESARAKGMDVLIADTAGRLHNKG 260
Cdd:COG0541 119 KLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFPEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDE 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 261 HLMQELTKVKrvmqkiDATAPHEVMLVVDAGTGQNAINQVEMFDEAVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFI 340
Cdd:COG0541 199 ELMDELKAIK------AAVNPDETLLVVDAMTGQDAVNVAKAFNEALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFI 272
|
250
....*....|....*...
gi 514970707 341 GVGEKIDDLRPFSAKSFV 358
Cdd:COG0541 273 GTGEKLDDLEPFHPDRMA 290
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
36-363 |
2.83e-77 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 241.03 E-value: 2.83e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 36 ETPKVEQAPVSAPVATEAAEEKSKGGFFSRMKEgLTKTRKNFADGMVNILIGGKEiddelleeveeqllvADIGVDATKT 115
Cdd:PRK14974 23 EEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKI-TEIKEKDIEDLLEELELELLE---------------SDVALEVAEE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 116 IIANLTER---------TARGDLIYShSLYKALqEELVALLAPRVKPLHIDSNKNPYVILVVGVNGVGKTTTIGKLAKRL 186
Cdd:PRK14974 87 ILESLKEKlvgkkvkrgEDVEEIVKN-ALKEAL-LEVLSVGDLFDLIEEIKSKGKPVVIVFVGVNGTGKTTTIAKLAYYL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 187 QGEGKKVMLAAGDTFRAAATEQLQIWGERNDVAVVAQGHGADSASVIFDAFESARAKGMDVLIADTAGRLHNKGHLMQEL 266
Cdd:PRK14974 165 KKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDEL 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 267 TKVKRVMQkidataPHEVMLVVDAGTGQNAINQVEMFDEAVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKI 346
Cdd:PRK14974 245 KKIVRVTK------PDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPILFLGVGQGY 318
|
330
....*....|....*..
gi 514970707 347 DDLRPFSAKSFVAALFE 363
Cdd:PRK14974 319 DDLIPFDPDWFVDKLLG 335
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
164-352 |
1.31e-70 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 219.01 E-value: 1.31e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 164 VILVVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVAVVAQGHGADSASVIFDAFESARAK 243
Cdd:cd18539 2 VILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 244 GMDVLIADTAGRLHNKGHLMQELTKVKRVMQkidataPHEVMLVVDAGTGQNAINQVEMFDEAVGLTGLTITKLDGTAKG 323
Cdd:cd18539 82 GFDVVIVDTAGRLHIDEELMDELKEIKEVLN------PDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARG 155
|
170 180
....*....|....*....|....*....
gi 514970707 324 GVLFNIASRTHVPIRFIGVGEKIDDLRPF 352
Cdd:cd18539 156 GAALSIRHVTGKPIKFIGVGEKIEDLEPF 184
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
106-361 |
1.51e-64 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 211.22 E-value: 1.51e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 106 ADIGVDATKTIIANLTER----------TARGDLIyshslyKALQEELVALLAPRVKPLHIDsnKNPYVILVVGVNGVGK 175
Cdd:PRK00771 37 ADVNVKLVKELSKSIKERaleeeppkglTPREHVI------KIVYEELVKLLGEETEPLVLP--LKPQTIMLVGLQGSGK 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 176 TTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVAVVAQGHGADSASVIFDAFEsaRAKGMDVLIADTAGR 255
Cdd:PRK00771 109 TTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE--KFKKADVIIVDTAGR 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 256 LHNKGHLMQELTKVKrvmqkiDATAPHEVMLVVDAGTGQNAINQVEMFDEAVGLTGLTITKLDGTAKGGVLFNIASRTHV 335
Cdd:PRK00771 187 HALEEDLIEEMKEIK------EAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGIIITKLDGTAKGGGALSAVAETGA 260
|
250 260
....*....|....*....|....*.
gi 514970707 336 PIRFIGVGEKIDDLRPFSAKSFVAAL 361
Cdd:PRK00771 261 PIKFIGTGEKIDDLERFDPDRFISRL 286
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
163-361 |
2.12e-54 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 177.38 E-value: 2.12e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 163 YVILVVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVAVVAQGHGADSASVIFDAFESARA 242
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 243 KGMDVLIADTAGRLHNKGHLMQELTKVKrvmqkiDATAPHEVMLVVDAGTGQNAINQVEMFDEAVGLTGLTITKLDGTAK 322
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQIS------DAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 514970707 323 GGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 361
Cdd:cd17875 155 GGGALSAVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
163-361 |
9.54e-49 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 163.17 E-value: 9.54e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 163 YVILVVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVAVVAQGHGADSASVIFDAFESARA 242
Cdd:cd17876 1 YVIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 243 KGMDVLIADTAGRLHNKGHLMQELTKVkrvmqkIDATAPHEVMLVVDAGTGQNAINQVEMFDEAV----------GLTGL 312
Cdd:cd17876 81 QGFDVVLIDTAGRMQNNEPLMRALAKL------IKENNPDLVLFVGEALVGNDAVDQLKKFNQALadyspsdnprLIDGI 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 514970707 313 TITKLDGTA-KGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 361
Cdd:cd17876 155 VLTKFDTIDdKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
135-361 |
3.22e-41 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 149.60 E-value: 3.22e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 135 LYKALQEELVALLAPRVKPLHIDSNKnPYVILVVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGE 214
Cdd:TIGR01425 74 IQDAVFEELCNLVDPGVEAFTPKKGK-TCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNAT 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 215 RNDVAVVAQGHGADSASVIFDAFESARAKGMDVLIADTAGRLHNKGHLMQELTKVKrvmqkiDATAPHEVMLVVDAGTGQ 294
Cdd:TIGR01425 153 KAGIPFYGSYEESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVR------EAIKPDSIIFVMDGSIGQ 226
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 514970707 295 NAINQVEMFDEAVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 361
Cdd:TIGR01425 227 AAFGQAKAFKDSVEVGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKL 293
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
109-366 |
1.33e-35 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 133.07 E-value: 1.33e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 109 GVDATktIIANLTERTARGdlIYSHSLYKALQEELVALLAPRVKPLhIDSNKnpyVILVVGVNGVGKTTTIGKLAKRL-Q 187
Cdd:COG1419 119 GVSPE--LARELLEKLPED--LSAEEAWRALLEALARRLPVAEDPL-LDEGG---VIALVGPTGVGKTTTIAKLAARFvL 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 188 GEGKKVMLAAGDTFRAAATEQLQIWGERNDVAVvaqghgadsaSVIFDAFESARA----KGMDVLIADTAGRLHNKGHLM 263
Cdd:COG1419 191 RGKKKVALITTDTYRIGAVEQLKTYARILGVPV----------EVAYDPEELKEAlerlRDKDLVLIDTAGRSPRDPELI 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 264 QELTKVKRVMQKIdataphEVMLVVDAGT-GQNAINQVEMFdEAVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFIGV 342
Cdd:COG1419 261 EELKALLDAGPPI------EVYLVLSATTkYEDLKEIVEAF-SSLGLDGLILTKLDETASLGSILNLLIRTGLPLSYITN 333
|
250 260
....*....|....*....|....*
gi 514970707 343 GEKI-DDLRPFSAKSFVAALFETDK 366
Cdd:COG1419 334 GQRVpEDIEVADPERLARLLLGGLE 358
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
164-361 |
1.95e-32 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 119.96 E-value: 1.95e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 164 VILVVGVNGVGKTTTIGKLAKRLQGE-GKKVMLAAGDTFRAAATEQLQIWGERNDVAVVAqghgADSASVIFDAFEsaRA 242
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVLKkGKKVALITTDTYRIGAVEQLKTYAEIMGIPVEV----AEDPEDLADALE--RL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 243 KGMDVLIADTAGRLHNKGHLMQELTKVkrvmqkIDATAPHEVMLVVDAGT-GQNAINQVEMFdEAVGLTGLTITKLDGTA 321
Cdd:cd17873 76 SDRDLILIDTAGRSPRDKEQLEELKEL------LGAGEDIEVHLVLSATTkAKDLKEIIERF-SPLGYRGLILTKLDETT 148
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 514970707 322 KGGVLFNIASRTHVPIRFIGVGEKI-DDLRPFSAKSFVAAL 361
Cdd:cd17873 149 SLGSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
137-363 |
1.70e-24 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 103.44 E-value: 1.70e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 137 KALQEELVALLAPRVKPLHIDSNKNPYVILVVGVNGVGKTTTIGKLAKRLQG--EGKKVMLAAGDTFRAAATEQLQIWGE 214
Cdd:PRK05703 196 RTAWRYLLELLANMIPVRVEDILKQGGVVALVGPTGVGKTTTLAKLAARYALlyGKKKVALITLDTYRIGAVEQLKTYAK 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 215 RNDVAVvaqghgadsaSVIFDAFESARA----KGMDVLIADTAGRLHNKGHLMQELtkvKRVMQKIDatAPHEVMLVVDA 290
Cdd:PRK05703 276 IMGIPV----------EVVYDPKELAKAleqlRDCDVILIDTAGRSQRDKRLIEEL---KALIEFSG--EPIDVYLVLSA 340
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 514970707 291 gTGQN-----AINQvemFDEaVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKI-DDLRPFSAKSFVAALFE 363
Cdd:PRK05703 341 -TTKYedlkdIYKH---FSR-LPLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNGQRVpDDIKVANPEELVRLLLG 414
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
143-361 |
5.01e-16 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 79.26 E-value: 5.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 143 LVALLAPRVKPLHIDSNKNPYVILVVGVNGVGKTTTIGKLAKRL--QGEGKKVMLAAGDTFRAAATEQLQIWGERNDVAV 220
Cdd:PRK12727 331 MLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFaaQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAV 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 221 vaqgHGADSASVIFDAFEsaRAKGMDVLIADTAGRLHNKGHLMQELTKVkRVMQKIDAtaphevMLVVDAGTGQNAINQV 300
Cdd:PRK12727 411 ----HEADSAESLLDLLE--RLRDYKLVLIDTAGMGQRDRALAAQLNWL-RAARQVTS------LLVLPANAHFSDLDEV 477
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 514970707 301 EMFDEAVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKI-DDLRPFSAKSFVAAL 361
Cdd:PRK12727 478 VRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVpDDLHRANAASLVLRL 539
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
133-254 |
5.10e-15 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 74.29 E-value: 5.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 133 HSLYKALQEELVALLAprVKPLHIDSNKNPYVILVVGVNGVGKTTTIGKLAKR--LQGEGKKVMLAAGDTFRAAATEQLQ 210
Cdd:TIGR03499 167 EDAWRWLREALEGMLP--VKPEEDPILEQGGVIALVGPTGVGKTTTLAKLAARfaLEHGKKKVALITTDTYRIGAVEQLK 244
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 514970707 211 IWGERNDVAVvaqgHGADSASVIFDAFESARAKGMdVLIaDTAG 254
Cdd:TIGR03499 245 TYAEILGIPV----KVARDPKELREALDRLRDKDL-ILI-DTAG 282
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
116-352 |
2.26e-12 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 67.68 E-value: 2.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 116 IIANLTERTARGDLIYSHSLykalQEELVALLAPRVKplhIDSN------KNPY-VILVVGVNGVGKTTTIGKL-AKRLQ 187
Cdd:PRK12724 177 MASKLEERLSPVDQGRNHNV----TERAVTYLEERVS---VDSDlfsgtgKNQRkVVFFVGPTGSGKTTSIAKLaAKYFL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 188 GEGKKVMLAAGDTFRAAATEQLQIWGErndvavvAQGHGADSASVIFDAFESARAKGMDVLIADTAGRLHNKGHLMQELT 267
Cdd:PRK12724 250 HMGKSVSLYTTDNYRIAAIEQLKRYAD-------TMGMPFYPVKDIKKFKETLARDGSELILIDTAGYSHRNLEQLERMQ 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 268 KVKRVMQKIDATaphEVMLVVDAGTGQNAINQVEMFDEAVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKId 347
Cdd:PRK12724 323 SFYSCFGEKDSV---ENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLGSFLELADTYSKSFTYLSVGQEV- 398
|
....*
gi 514970707 348 dlrPF 352
Cdd:PRK12724 399 ---PF 400
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
164-359 |
2.38e-12 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 67.45 E-value: 2.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 164 VILVVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVAVVAqghgADSASVIFDAFE-SARA 242
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV----ATSPAELEEAVQyMTYV 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 243 KGMDVLIADTAGRlhnkGHLMQEltKVKRVMQKIDATAPHEVMLVVDAGTGQNAINQVEMFDEAVGLTGLTITKLDGTAK 322
Cdd:PRK12726 284 NCVDHILIDTVGR----NYLAEE--SVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTR 357
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 514970707 323 GGVLFNIASRTHVPIRFIGVGEKIDD--LRPFS---AKSFVA 359
Cdd:PRK12726 358 IGDLYTVMQETNLPVLYMTDGQNITEniFRPKSrwlAERFVG 399
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
164-266 |
3.48e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 63.55 E-value: 3.48e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 164 VILVVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQiwgernDVAVVAQGHGADSASVIFDAFESARAK 243
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALARKL 77
|
90 100
....*....|....*....|...
gi 514970707 244 GMDVLIADTAGRLHNKGHLMQEL 266
Cdd:smart00382 78 KPDVLILDEITSLLDAEQEALLL 100
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
164-364 |
6.36e-12 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 66.75 E-value: 6.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 164 VILVVGVNGVGKTTTIGKLAKR--LQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVAVvaqgHGADSASVIFDAFESAR 241
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAARcvAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV----HAVKDAADLRFALAALG 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 242 AKGMdVLIaDTAG---RLHNKGHLMQELTKVKRVMQKIdataphevmLVVDAGTGQNAINQVE---MFDEAVGLTGLTIT 315
Cdd:PRK14723 263 DKHL-VLI-DTVGmsqRDRNVSEQIAMLCGVGRPVRRL---------LLLNAASHGDTLNEVVhayRHGAGEDVDGCIIT 331
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 514970707 316 KLDGTAKGGVLFNIASRTHVPIRFIGVGEKI-DDLRPFSAKSFVAALFET 364
Cdd:PRK14723 332 KLDEATHLGPALDTVIRHRLPVHYVSTGQKVpEHLELAQADELVDRAFAT 381
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
160-346 |
1.06e-11 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 65.86 E-value: 1.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 160 KNPYVILVVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVAVVAQGHGADSASVIFDAFES 239
Cdd:PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 240 ARakgMDVLIADTAGRLHNKGHLMQELTKvkrVMQKIDataPHEVMLVVDAG-TGQNAINQVEMFDEaVGLTGLTITKLD 318
Cdd:PRK11889 319 AR---VDYILIDTAGKNYRASETVEEMIE---TMGQVE---PDYICLTLSASmKSKDMIEIITNFKD-IHIDGIVFTKFD 388
|
170 180
....*....|....*....|....*...
gi 514970707 319 GTAKGGVLFNIASRTHVPIRFIGVGEKI 346
Cdd:PRK11889 389 ETASSGELLKIPAVSSAPIVLMTDGQDV 416
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
164-358 |
2.46e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 64.36 E-value: 2.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 164 VILVVGVNGVGKTTTIGKLAKR--LQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVAVVAQGHGADsasvIFDAFESAR 241
Cdd:PRK14722 139 VFALMGPTGVGKTTTTAKLAARcvMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD----LQLALAELR 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 242 AKGMdVLIaDTAGRLHnkghlmQELTKVKRVMQKIDATAPHEVMLVVDAGTGQNAINQV-EMFDEAVG--------LTGL 312
Cdd:PRK14722 215 NKHM-VLI-DTIGMSQ------RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVvQAYRSAAGqpkaalpdLAGC 286
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 514970707 313 TITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFV 358
Cdd:PRK14722 287 ILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKFL 332
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
160-346 |
4.96e-10 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 59.76 E-value: 4.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 160 KNPYVILVVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVAVVAQGHGADSASVIFDAFES 239
Cdd:PRK06731 73 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 240 ARakgMDVLIADTAGRLHNKGHLMQELtkvkrvMQKIDATAPHEVMLVVDAGTGQNAINQVEMFDEAVGLTGLTITKLDG 319
Cdd:PRK06731 153 AR---VDYILIDTAGKNYRASETVEEM------IETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDE 223
|
170 180
....*....|....*....|....*..
gi 514970707 320 TAKGGVLFNIASRTHVPIRFIGVGEKI 346
Cdd:PRK06731 224 TASSGELLKIPAVSSAPIVLMTDGQDV 250
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
164-363 |
1.02e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 56.50 E-value: 1.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 164 VILVVGVNGVGKTTTIGKLAKR--LQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVAVvaqgHGADSASVIFDAFESAR 241
Cdd:PRK14721 193 VYALIGPTGVGKTTTTAKLAARavIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV----RSIKDIADLQLMLHELR 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 242 AKGMdVLIaDTAGRLHNKGHLMQELTKVKRVMQKIdataphEVMLVVDAGTGQNAINQVEMFDEAVGLTGLTITKLDGTA 321
Cdd:PRK14721 269 GKHM-VLI-DTVGMSQRDQMLAEQIAMLSQCGTQV------KHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAA 340
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 514970707 322 KGGVLFNIASRTHVPIRFIGVGEKI-DDLRPFSAKSFVAALFE 363
Cdd:PRK14721 341 SLGIALDAVIRRKLVLHYVTNGQKVpEDLHEANSRYLLHRIFK 383
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
111-334 |
1.17e-07 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 52.98 E-value: 1.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 111 DATKTIIANLTERTARGDLIYSHSLYKALQEELVALLAPRVK-PLHIDSNKNPYVILVVGVNGVGKTTTIGKLAK--RLQ 187
Cdd:PRK12723 122 DFSESYIKDINEFIKKEFSLSDLDDYDKVRDSVIIYIAKTIKcSGSIIDNLKKRVFILVGPTGVGKTTTIAKLAAiyGIN 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 188 GEGKK--VMLAAGDTFRAAATEQLQIWGERNDVAVVAQGHGADSASVIFDafesarAKGMDVLIADTAGRLHNKghlMQE 265
Cdd:PRK12723 202 SDDKSlnIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ------SKDFDLVLVDTIGKSPKD---FMK 272
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 514970707 266 LTKVKRVMQKIDATAphEVMLVVDAGTGQNAINQVEMFDEAVGLTGLTITKLDGTAKGGvlfNIASRTH 334
Cdd:PRK12723 273 LAEMKELLNACGRDA--EFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVG---NLISLIY 336
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
168-346 |
6.64e-07 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 51.12 E-value: 6.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 168 VGVNGVGKTTTIGKLAKR--LQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVAVVAQGHGADSASvifdAFESARAKGM 245
Cdd:PRK06995 262 MGPTGVGKTTTTAKLAARcvMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRL----ALSELRNKHI 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 246 dVLIaDTAGrlhnkghlmqeltkvkrVMQKIDATAPHEVMLvvdAGTGQ--------NAINQVEMFDEAV------GLTG 311
Cdd:PRK06995 338 -VLI-DTIG-----------------MSQRDRMVSEQIAML---HGAGApvkrllllNATSHGDTLNEVVqayrgpGLAG 395
|
170 180 190
....*....|....*....|....*....|....*.
gi 514970707 312 LTITKLD-GTAKGGVLfNIASRTHVPIRFIGVGEKI 346
Cdd:PRK06995 396 CILTKLDeAASLGGAL-DVVIRYKLPLHYVSNGQRV 430
|
|
| PRK05541 |
PRK05541 |
adenylylsulfate kinase; Provisional |
157-202 |
1.21e-04 |
|
adenylylsulfate kinase; Provisional
Pssm-ID: 235498 Cd Length: 176 Bit Score: 42.35 E-value: 1.21e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 514970707 157 DSNKNPYVILVVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFR 202
Cdd:PRK05541 2 QMKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR 47
|
|
| TMPK |
cd01672 |
Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the ... |
165-222 |
1.09e-03 |
|
Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Pssm-ID: 238835 Cd Length: 200 Bit Score: 39.94 E-value: 1.09e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 514970707 165 ILVVGVNGVGKTTTIGKLAKRLQGEGKKVML--AAGDTFRAAATEQLQIWGERNDVAVVA 222
Cdd:cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLtrEPGGTPIGEAIRELLLDPEDEKMDPRA 62
|
|
| SIMIBI |
cd01983 |
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ... |
164-199 |
1.41e-03 |
|
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Pssm-ID: 349751 [Multi-domain] Cd Length: 107 Bit Score: 37.80 E-value: 1.41e-03
10 20 30
....*....|....*....|....*....|....*..
gi 514970707 164 VILVVG-VNGVGKTTTIGKLAKRLQGEGKKVMLAAGD 199
Cdd:cd01983 2 VIAVTGgKGGVGKTTLAAALAVALAAKGYKVLLIDLD 38
|
|
| arsen_driv_ArsA |
TIGR04291 |
arsenical pump-driving ATPase; The broader family (TIGR00345) to which the current family ... |
134-199 |
1.77e-03 |
|
arsenical pump-driving ATPase; The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite).
Pssm-ID: 275109 [Multi-domain] Cd Length: 566 Bit Score: 40.07 E-value: 1.77e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 514970707 134 SLYKALQEELVALLAPRVKPLHID-----------SNKNPYVILVVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGD 199
Cdd:TIGR04291 282 ALRQLLNDDQPQLSLDITTPQVPDlpslsrlideiAKSEKGLIMTMGKGGVGKTTVAAAIAVRLANKGLDVHLTTSD 358
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
164-205 |
2.12e-03 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 39.96 E-value: 2.12e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 514970707 164 VILVVGVNGVGKTTTIGKLAKRLQGEGKKVMLAA--GdtfRAAA 205
Cdd:COG0507 142 VSVLTGGAGTGKTTTLRALLAALEALGLRVALAAptG---KAAK 182
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
85-147 |
2.98e-03 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 35.99 E-value: 2.98e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 514970707 85 LIGGKEIDDELLEEVEEQLLVADIGVDATKTIIANLTERtARGDLIYSHS----LYKALQEELVALL 147
Cdd:smart00963 12 LFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEK-AKGEVLKGLTpkqeVKKILKEELVKIL 77
|
|
| Pgk2 |
COG2074 |
2-phosphoglycerate kinase/Mevalonate-3-phosphate 5-kinase [Carbohydrate transport and ... |
158-187 |
4.58e-03 |
|
2-phosphoglycerate kinase/Mevalonate-3-phosphate 5-kinase [Carbohydrate transport and metabolism, Lipid transport and metabolism];
Pssm-ID: 441677 Cd Length: 207 Bit Score: 38.01 E-value: 4.58e-03
10 20 30
....*....|....*....|....*....|
gi 514970707 158 SNKNPYVILVVGVNGVGKTTTIGKLAKRLQ 187
Cdd:COG2074 2 RMKRPRIILIGGASGVGKSTIAAELARRLG 31
|
|
| |
