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Conserved domains on  [gi|493929222|ref|WP_006873856|]
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KH domain-containing protein [Anaerotruncus colihominis]

Protein Classification

KH domain-containing protein( domain architecture ID 10004768)

uncharacterized KH domain-containing similar to Bacillus subtilis YlqC; KH (K homology RNA-binding domain) binds single-stranded RNA or DNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YlqC COG1837
Predicted RNA-binding protein YlqC, contains KH domain, UPF0109 family [General function ...
 1-77 6.98e-29

Predicted RNA-binding protein YlqC, contains KH domain, UPF0109 family [General function prediction only];


:

Pssm-ID: 441442  Cd Length: 76  Bit Score: 97.81  E-value: 6.98e-29
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493929222  1 MDKLIVTIARGLVENKDAVSVTVDEpnEEGLVVYHLHVAPDDMGRVIGKQGRIAKAIRTVVRAAANRADQKVAVEID 77
Cdd:COG1837   1 MKELVEFLVKPLVDHPDDVSVTEEE--GERTVVLELRVAPEDLGKVIGKQGRTAKAIRTVLSAAAAKEGKRVRLEIV 75
 
Name Accession Description Interval E-value
YlqC COG1837
Predicted RNA-binding protein YlqC, contains KH domain, UPF0109 family [General function ...
 1-77 6.98e-29

Predicted RNA-binding protein YlqC, contains KH domain, UPF0109 family [General function prediction only];


Pssm-ID: 441442  Cd Length: 76  Bit Score: 97.81  E-value: 6.98e-29
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493929222  1 MDKLIVTIARGLVENKDAVSVTVDEpnEEGLVVYHLHVAPDDMGRVIGKQGRIAKAIRTVVRAAANRADQKVAVEID 77
Cdd:COG1837   1 MKELVEFLVKPLVDHPDDVSVTEEE--GERTVVLELRVAPEDLGKVIGKQGRTAKAIRTVLSAAAAKEGKRVRLEIV 75
KH-II_YlqC-like cd22533
type II K-homology (KH) RNA-binding domain found in Bacillus subtilis UPF0109 protein YlqC and ...
 1-77 2.30e-24

type II K-homology (KH) RNA-binding domain found in Bacillus subtilis UPF0109 protein YlqC and similar proteins; The family includes a group of uncharacterized proteins which show sequence similarity to Bacillus subtilis UPF0109 protein YlqC. They are mainly found in bacteria and contain only one canonical type II K-homology (KH) domain that has the signature motif GXXG (where X represents any amino acid).


Pssm-ID: 411790  Cd Length: 75  Bit Score: 86.37  E-value: 2.30e-24
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493929222  1 MDKLIVTIARGLVENKDAVSVTVDEpnEEGLVVYHLHVAPDDMGRVIGKQGRIAKAIRTVVRAAANRADQKVAVEID 77
Cdd:cd22533   1 MKELIEYIAKSLVDHPESVRVSEIE--GEKTTVYELRVAPEDVGRVIGKQGRTAKAIRTLVSAAAAKDGKRVRLEIL 75
KH_4 pfam13083
KH domain;
3-76 2.76e-22

KH domain;


Pssm-ID: 463779  Cd Length: 73  Bit Score: 80.98  E-value: 2.76e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493929222   3 KLIVTIARGLVENKDAVSVTVDEpnEEGLVVYHLHVAPDDMGRVIGKQGRIAKAIRTVVRAAANRADQKVAVEI 76
Cdd:pfam13083  2 ELVEDILKALVDDPEEVSVTEEE--EEKTVVLELNVAGEDMGKVIGKQGRTLDALRTLVSAAANKDGKRVRVEI 73
PRK00468 PRK00468
KH domain-containing protein;
1-76 5.56e-19

KH domain-containing protein;


Pssm-ID: 179040  Cd Length: 75  Bit Score: 72.84  E-value: 5.56e-19
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 493929222  1 MDKLIVTIARGLVENKDAVSVTVDEpnEEGLVVYHLHVAPDDMGRVIGKQGRIAKAIRTVVRAAANRADQKVAVEI 76
Cdd:PRK00468  1 MKELVETIAKALVDNPDAVQVNEIE--GEQSVILELKVAPEDMGKVIGKQGRIAKAIRTVVKAAAIKENKRVVVEI 74
 
Name Accession Description Interval E-value
YlqC COG1837
Predicted RNA-binding protein YlqC, contains KH domain, UPF0109 family [General function ...
 1-77 6.98e-29

Predicted RNA-binding protein YlqC, contains KH domain, UPF0109 family [General function prediction only];


Pssm-ID: 441442  Cd Length: 76  Bit Score: 97.81  E-value: 6.98e-29
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493929222  1 MDKLIVTIARGLVENKDAVSVTVDEpnEEGLVVYHLHVAPDDMGRVIGKQGRIAKAIRTVVRAAANRADQKVAVEID 77
Cdd:COG1837   1 MKELVEFLVKPLVDHPDDVSVTEEE--GERTVVLELRVAPEDLGKVIGKQGRTAKAIRTVLSAAAAKEGKRVRLEIV 75
KH-II_YlqC-like cd22533
type II K-homology (KH) RNA-binding domain found in Bacillus subtilis UPF0109 protein YlqC and ...
 1-77 2.30e-24

type II K-homology (KH) RNA-binding domain found in Bacillus subtilis UPF0109 protein YlqC and similar proteins; The family includes a group of uncharacterized proteins which show sequence similarity to Bacillus subtilis UPF0109 protein YlqC. They are mainly found in bacteria and contain only one canonical type II K-homology (KH) domain that has the signature motif GXXG (where X represents any amino acid).


Pssm-ID: 411790  Cd Length: 75  Bit Score: 86.37  E-value: 2.30e-24
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493929222  1 MDKLIVTIARGLVENKDAVSVTVDEpnEEGLVVYHLHVAPDDMGRVIGKQGRIAKAIRTVVRAAANRADQKVAVEID 77
Cdd:cd22533   1 MKELIEYIAKSLVDHPESVRVSEIE--GEKTTVYELRVAPEDVGRVIGKQGRTAKAIRTLVSAAAAKDGKRVRLEIL 75
KH_4 pfam13083
KH domain;
3-76 2.76e-22

KH domain;


Pssm-ID: 463779  Cd Length: 73  Bit Score: 80.98  E-value: 2.76e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493929222   3 KLIVTIARGLVENKDAVSVTVDEpnEEGLVVYHLHVAPDDMGRVIGKQGRIAKAIRTVVRAAANRADQKVAVEI 76
Cdd:pfam13083  2 ELVEDILKALVDDPEEVSVTEEE--EEKTVVLELNVAGEDMGKVIGKQGRTLDALRTLVSAAANKDGKRVRVEI 73
PRK00468 PRK00468
KH domain-containing protein;
1-76 5.56e-19

KH domain-containing protein;


Pssm-ID: 179040  Cd Length: 75  Bit Score: 72.84  E-value: 5.56e-19
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 493929222  1 MDKLIVTIARGLVENKDAVSVTVDEpnEEGLVVYHLHVAPDDMGRVIGKQGRIAKAIRTVVRAAANRADQKVAVEI 76
Cdd:PRK00468  1 MKELVETIAKALVDNPDAVQVNEIE--GEQSVILELKVAPEDMGKVIGKQGRIAKAIRTVVKAAAIKENKRVVVEI 74
PRK01064 PRK01064
hypothetical protein; Provisional
 1-76 3.90e-09

hypothetical protein; Provisional


Pssm-ID: 179216  Cd Length: 78  Bit Score: 48.00  E-value: 3.90e-09
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 493929222  1 MDKLIVTIARGLVENKDavSVTVDEPNEEGLVVYHLHVAPDDMGRVIGKQGRIAKAIRTVVRAAANRADQKVAVEI 76
Cdd:PRK01064  1 MKEFLAYIVKNLVDRPE--EVHIKEVQGTHTIIYELTVAKPDIGKIIGKEGRTIKAIRTLLVSVASRNNVKVSLEI 74
PRK02821 PRK02821
RNA-binding protein;
10-67 7.75e-09

RNA-binding protein;


Pssm-ID: 179479  Cd Length: 77  Bit Score: 47.33  E-value: 7.75e-09
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 493929222 10 RGLVENKDAVSVTVDEpNEEGLVVyHLHVAPDDMGRVIGKQGRIAKAIRTVVRAAANR 67
Cdd:PRK02821 11 RGIVDNPDDVRVDSHT-NRRGRTL-EVRVHPDDLGKVIGRGGRTATALRTVVAAIGGR 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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