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Conserved domains on  [gi|489073931|ref|WP_002983885|]
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MULTISPECIES: YkuJ family protein [Streptococcus]

Protein Classification

YkuJ family protein( domain architecture ID 10008729)

YkuJ family protein is a DUF1797 domain-containing protein; similar to Bacillus subtilis protein YkuJ

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YkuJ COG4703
Uncharacterized conserved protein YkuJ, DUF1797 family [Function unknown];
3-76 5.42e-27

Uncharacterized conserved protein YkuJ, DUF1797 family [Function unknown];


:

Pssm-ID: 443738  Cd Length: 73  Bit Score: 93.06  E-value: 5.42e-27
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489073931  3 SHLVRIINRLELMVTDGGN--LKRNFERDGVVVAEVAFSNDPEngpVFTLRDVEARESYSFDSIDLIAMEIYDLLY 76
Cdd:COG4703   1 SQLLAIIQRLEAMQEDDDNevQVRRFEKNGEEVCSVKYDPKTE---TFELEEYRKGQTYQFDDIDLVAIEIYELLQ 73
 
Name Accession Description Interval E-value
YkuJ COG4703
Uncharacterized conserved protein YkuJ, DUF1797 family [Function unknown];
3-76 5.42e-27

Uncharacterized conserved protein YkuJ, DUF1797 family [Function unknown];


Pssm-ID: 443738  Cd Length: 73  Bit Score: 93.06  E-value: 5.42e-27
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489073931  3 SHLVRIINRLELMVTDGGN--LKRNFERDGVVVAEVAFSNDPEngpVFTLRDVEARESYSFDSIDLIAMEIYDLLY 76
Cdd:COG4703   1 SQLLAIIQRLEAMQEDDDNevQVRRFEKNGEEVCSVKYDPKTE---TFELEEYRKGQTYQFDDIDLVAIEIYELLQ 73
DUF1797 pfam08796
Protein of unknown function (DUF1797); This is a domain of unknown function. It forms a ...
 8-75 2.41e-24

Protein of unknown function (DUF1797); This is a domain of unknown function. It forms a central anti-parallel beta sheet with flanking alpha helical regions.


Pssm-ID: 430222  Cd Length: 67  Bit Score: 86.12  E-value: 2.41e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489073931   8 IINRLELMV--TDGGNLKRNFERDGVVVAEVAFSNDPEngpVFTLRDVEARESYSFDSIDLIAMEIYDLL 75
Cdd:pfam08796  1 IINRLEAMQeaESGEVQQRNFEKEGEEVCTVSYDPKTE---TFELEEYRDKQTYQFDDIDLVAIEIYDLL 67
 
Name Accession Description Interval E-value
YkuJ COG4703
Uncharacterized conserved protein YkuJ, DUF1797 family [Function unknown];
3-76 5.42e-27

Uncharacterized conserved protein YkuJ, DUF1797 family [Function unknown];


Pssm-ID: 443738  Cd Length: 73  Bit Score: 93.06  E-value: 5.42e-27
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489073931  3 SHLVRIINRLELMVTDGGN--LKRNFERDGVVVAEVAFSNDPEngpVFTLRDVEARESYSFDSIDLIAMEIYDLLY 76
Cdd:COG4703   1 SQLLAIIQRLEAMQEDDDNevQVRRFEKNGEEVCSVKYDPKTE---TFELEEYRKGQTYQFDDIDLVAIEIYELLQ 73
DUF1797 pfam08796
Protein of unknown function (DUF1797); This is a domain of unknown function. It forms a ...
 8-75 2.41e-24

Protein of unknown function (DUF1797); This is a domain of unknown function. It forms a central anti-parallel beta sheet with flanking alpha helical regions.


Pssm-ID: 430222  Cd Length: 67  Bit Score: 86.12  E-value: 2.41e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489073931   8 IINRLELMV--TDGGNLKRNFERDGVVVAEVAFSNDPEngpVFTLRDVEARESYSFDSIDLIAMEIYDLL 75
Cdd:pfam08796  1 IINRLEAMQeaESGEVQQRNFEKEGEEVCTVSYDPKTE---TFELEEYRDKQTYQFDDIDLVAIEIYDLL 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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